7 results on '"Kevin Donkers"'
Search Results
2. Implications of the variation in biological18O natural abundance in body water to inform use of Bayesian methods for modelling total energy expenditure when using doubly labelled water
- Author
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Priya Singh, Michelle C. Venables, Leslie J. C. Bluck, Elise R. Orford, and Kevin Donkers
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education.field_of_study ,Chemistry ,010401 analytical chemistry ,Organic Chemistry ,Bayesian probability ,Body water ,Population ,Bayesian inference ,01 natural sciences ,0104 chemical sciences ,Analytical Chemistry ,Bayesian statistics ,03 medical and health sciences ,Bayes' theorem ,0302 clinical medicine ,Total energy expenditure ,Abundance (ecology) ,Statistics ,030211 gastroenterology & hepatology ,education ,Spectroscopy - Abstract
Rationale Variation in 18 O natural abundance can lead to errors in the calculation of total energy expenditure (TEE) when using the doubly labelled water (DLW) method. The use of Bayesian statistics allows a distribution to be assigned to 18 O natural abundance, thus allowing a best-fit value to be used in the calculation. The aim of this study was to calculate within-subject variation in 18 O natural abundance and apply this to our original working model for TEE calculation. Methods Urine samples from a cohort of 99 women, dosed with 50 g of 20% 2 H2 O, undertaking a 14-day breast milk intake protocol, were analysed for 18 O. The within-subject variance was calculated and applied to a Bayesian model for the calculation of TEE in a separate cohort of 36 women. This cohort of 36 women had taken part in a DLW study and had been dosed with 80 mg/kg body weight 2 H2 O and 150 mg/kg body weight H2 18 O. Results The average change in the δ18 O value from the 99 women was 1.14‰ (0.77) [0.99, 1.29], with the average within-subject 18 O natural abundance variance being 0.13‰2 (0.25) [0.08, 0.18]. There were no significant differences in TEE (9745 (1414), 9804 (1460) and 9789 (1455) kJ/day, non-Bayesian, Bluck Bayesian and modified Bayesian models, respectively) between methods. Conclusions Our findings demonstrate that using a reduced natural variation in 18 O as calculated from a population does not impact significantly on the calculation of TEE in our model. It may therefore be more conservative to allow a larger variance to account for individual extremes.
- Published
- 2018
3. A programmable chemical computer with memory and pattern recognition
- Author
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Abhishek Sharma, Juan Manuel Gutiérrez, Kevin Donkers, Soichiro Tsuda, Geoffrey J. T. Cooper, Leroy Cronin, and Gerardo Aragon-Camarasa
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Chemical process ,Computer science ,Science ,General Physics and Astronomy ,Image processing ,Data_CODINGANDINFORMATIONTHEORY ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,General Biochemistry, Genetics and Molecular Biology ,Article ,symbols.namesake ,0103 physical sciences ,lcsh:Science ,010303 astronomy & astrophysics ,Throughput (business) ,Multidisciplinary ,business.industry ,Computational science ,Robotics ,Pattern recognition ,General Chemistry ,021001 nanoscience & nanotechnology ,Autoencoder ,0104 chemical sciences ,Physical chemistry ,Pattern recognition (psychology) ,symbols ,lcsh:Q ,State (computer science) ,Artificial intelligence ,0210 nano-technology ,business ,Chemical computer ,Von Neumann architecture - Abstract
Current computers are limited by the von Neumann bottleneck, which constrains the throughput between the processing unit and the memory. Chemical processes have the potential to scale beyond current computing architectures as the processing unit and memory reside in the same space, performing computations through chemical reactions, yet their lack of programmability limits them. Herein, we present a programmable chemical processor comprising of a 5 by 5 array of cells filled with a switchable oscillating chemical (Belousov–Zhabotinsky) reaction. Each cell can be individually addressed in the ‘on’ or ‘off’ state, yielding more than 2.9 × 1017 chemical states which arise from the ability to detect distinct amplitudes of oscillations via image processing. By programming the array of interconnected BZ reactions we demonstrate chemically encoded and addressable memory, and we create a chemical Autoencoder for pattern recognition able to perform the equivalent of one million operations per second., Unconventional computing architectures might outperform current ones, but their realization has been limited to solving simple specific problems. Here, a network of interconnected Belousov-Zhabotinski reactions, operated by independent magnetic stirrers, performs encoding/decoding operations and data storage.
- Published
- 2019
4. Graphene Near-Degenerate Four-Wave Mixing for Phase Characterization of Broadband Pulses in Ultrafast Microscopy
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Matthias Handloser, Alberto Comin, Antonio Lombardo, Andrea C. Ferrari, Achim Hartschuh, Kevin Donkers, Giovanni Piredda, and Richard Ciesielski
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Femtosecond pulse shaping ,Materials science ,Physics::Optics ,Bioengineering ,02 engineering and technology ,01 natural sciences ,law.invention ,010309 optics ,Four-wave mixing ,Optics ,law ,0103 physical sciences ,General Materials Science ,Mixing (physics) ,Graphene ,business.industry ,Mechanical Engineering ,General Chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,Laser ,Pulse shaping ,Femtosecond ,0210 nano-technology ,business ,Ultrashort pulse - Abstract
We investigate near-degenerate four-wave mixing in graphene using femtosecond laser pulse shaping microscopy. Intense near-degenerate four-wave mixing signals on either side of the exciting laser spectrum are controlled by amplitude and phase shaping. Quantitative signal modeling for the input pulse parameters shows a spectrally flat phase response of the near-degenerate four-wave mixing due to the linear dispersion of the massless Dirac Fermions in graphene. Exploiting these properties we demonstrate that graphene is uniquely suited for the intrafocus phase characterization and compression of broadband laser pulses, circumventing disadvantages of common methods utilizing second or third harmonic light.
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- 2015
5. Compression of Ultrashort Laser Pulses via Gated Multiphoton Intrapulse Interference Phase Scans
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Alberto Comin, Kevin Donkers, Achim Hartschuh, Giovanni Piredda, and Richard Ciesielski
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Physics ,business.industry ,Phase (waves) ,FOS: Physical sciences ,Statistical and Nonlinear Physics ,02 engineering and technology ,021001 nanoscience & nanotechnology ,01 natural sciences ,Pulse shaping ,Atomic and Molecular Physics, and Optics ,Numerical aperture ,010309 optics ,Optics ,Multiphoton intrapulse interference phase scan ,Pulse compression ,0103 physical sciences ,Femtosecond ,0210 nano-technology ,business ,Ultrashort pulse ,Phase modulation ,Physics - Optics ,Optics (physics.optics) - Abstract
Delivering femtosecond laser light in the focal plane of a high numerical aperture microscope objective is still a challenge, despite significant developments in the generation of ultrashort pulses. One of the most popular techniques, used to correct phase distortions resulting from propagation through transparent media, is the multiphoton intrapulse interference phase scan (MIIPS). The accuracy of MIIPS however is limited when higher order phase distortions are present. Here we introduce an improvement, called Gated-MIIPS, which avoids shortcomings of MIIPS, reduces the influence of higher order phase terms, and can be used to more efficiently compress broad band laser pulses even with a simple 4f pulse shaper setup. In this work we present analytical formulas for MIIPS and Gated-MIIPS valid for chirped Gaussian pulses; we show an approximated analytic expression for Gated-MIIPS valid for arbitrary pulse shapes; finally we demonstrate the increased accuracy of Gated-MIIPS via experiment and numerical simulation., Comment: 11 pages, 7 figures
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- 2014
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6. Graphene Near-Degenerate Four-Wave Mixing for PhaseCharacterization of Broadband Pulses in Ultrafast Microscopy.
- Author
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Richard Ciesielski, Alberto Comin, Matthias Handloser, Kevin Donkers, Giovanni Piredda, Antonio Lombardo, Andrea C. Ferrari, and Achim Hartschuh
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- 2015
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7. Artificial intelligence exploration of unstable protocells leads to predictable properties and discovery of collective behavior
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James Ward Taylor, Leroy Cronin, Laurie J. Points, Kevin Donkers, and Jonathan Grizou
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Protocell ,Imagination ,Collective behavior ,media_common.quotation_subject ,Origin of Life ,02 engineering and technology ,010402 general chemistry ,Models, Biological ,01 natural sciences ,Phase Transition ,Physics::Fluid Dynamics ,Machine Learning ,Automation ,Artificial Intelligence ,media_common ,Multidisciplinary ,business.industry ,Water ,Robotics ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,Models, Chemical ,Physical Sciences ,Artificial Cells ,Artificial intelligence ,0210 nano-technology ,business ,Oils ,Algorithms - Abstract
Protocell models are used to investigate how cells might have first assembled on Earth. Some, like oil-in-water droplets, can be seemingly simple models, while able to exhibit complex and unpredictable behaviors. How such simple oil-in-water systems can come together to yield complex and life-like behaviors remains a key question. Herein, we illustrate how the combination of automated experimentation and image processing, physicochemical analysis, and machine learning allows significant advances to be made in understanding the driving forces behind oil-in-water droplet behaviors. Utilizing >7,000 experiments collected using an autonomous robotic platform, we illustrate how smart automation cannot only help with exploration, optimization, and discovery of new behaviors, but can also be core to developing fundamental understanding of such systems. Using this process, we were able to relate droplet formulation to behavior via predicted physical properties, and to identify and predict more occurrences of a rare collective droplet behavior, droplet swarming. Proton NMR spectroscopic and qualitative pH methods enabled us to better understand oil dissolution, chemical change, phase transitions, and droplet and aqueous phase flows, illustrating the utility of the combination of smart-automation and traditional analytical chemistry techniques. We further extended our study for the simultaneous exploration of both the oil and aqueous phases using a robotic platform. Overall, this work shows that the combination of chemistry, robotics, and artificial intelligence enables discovery, prediction, and mechanistic understanding in ways that no one approach could achieve alone.
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