27 results on '"Kerr CA"'
Search Results
2. Fluorine magnetic resonance studies. V. Fluorine-fluorine coupling in 1,4-difluorobenzenes
- Author
-
Kerr, CA, Quinn, KJ, and Rae, ID
- Abstract
A number of substituted 1,4-difluorobenzenes were examined by 19F n.m.r. spectroscopy and 5JFF was found to vary with the nature of the substituent in much the same way that it does in more heavily substituted difluorobenzenes. Only in 2',5'-difluoroacetophenone is 5JFF larger than it is for 1,4-difluorobenzene itself. The magnitude of 5JFF is increased when a small ring is fused to the benzene ring, i.e. in 4,7-difluorodihydroindenes and 2,5-difluorobicyclo[4,2,0]octa-1,3,5- trienes. Similar effects have been reported for 5JHH in aromatic systems, and the value of 5JHH for tricyclo-[6,2,0,03,6]deca-1,3(6),7-triene is found to be 1.61 Hz.
- Published
- 1980
- Full Text
- View/download PDF
3. The heritability of the expression of two stress-regulated gene fragments in pigs
- Author
-
Kerr, Ca, Kim Bunter, Seymour, R., Shen, B., and Reverter, A.
4. Some Friedel-Crafts reactions of γ-butyrolactone
- Author
-
Kerr, CA, primary and Rae, ID, additional
- Published
- 1978
- Full Text
- View/download PDF
5. Marker-based foot posture assessment in children
- Author
-
Kerr Catriona M, Stebbins Julie, Theologis Tim, and Zavatsky Amy B
- Subjects
Diseases of the musculoskeletal system ,RC925-935 - Published
- 2012
- Full Text
- View/download PDF
6. Body Awareness: a phenomenological inquiry into the common ground of mind-body therapies
- Author
-
Silow Theresa, Kerr Catherine E, Price Cynthia J, Daubenmier Jennifer J, Wrubel Judith, Mehling Wolf E, Gopisetty Viranjini, and Stewart Anita L
- Subjects
Medical philosophy. Medical ethics ,R723-726 - Abstract
Abstract Enhancing body awareness has been described as a key element or a mechanism of action for therapeutic approaches often categorized as mind-body approaches, such as yoga, TaiChi, Body-Oriented Psychotherapy, Body Awareness Therapy, mindfulness based therapies/meditation, Feldenkrais, Alexander Method, Breath Therapy and others with reported benefits for a variety of health conditions. To better understand the conceptualization of body awareness in mind-body therapies, leading practitioners and teaching faculty of these approaches were invited as well as their patients to participate in focus groups. The qualitative analysis of these focus groups with representative practitioners of body awareness practices, and the perspectives of their patients, elucidated the common ground of their understanding of body awareness. For them body awareness is an inseparable aspect of embodied self awareness realized in action and interaction with the environment and world. It is the awareness of embodiment as an innate tendency of our organism for emergent self-organization and wholeness. The process that patients undergo in these therapies was seen as a progression towards greater unity between body and self, very similar to the conceptualization of embodiment as dialectic of body and self described by some philosophers as being experienced in distinct developmental levels.
- Published
- 2011
- Full Text
- View/download PDF
7. Measuring the combinatorial expression of solute transporters and metalloproteinases transcripts in colorectal cancer
- Author
-
Cosgrove Leah, Zucker Michelle, Hines Barney M, Dunne Robert, Kerr Caroline A, Ruszkiewicz Andrew, Lockett Trevor, and Head Richard
- Subjects
Medicine ,Biology (General) ,QH301-705.5 ,Science (General) ,Q1-390 - Abstract
Abstract Background It was hypothesised that colorectal cancer (CRC) could be diagnosed in biopsies by measuring the combined expression of a small set of well known genes. Genes were chosen based on their role in either the breakdown of the extracellular matrix or with changes in cellular metabolism both of which are associated with CRC progression Findings Gene expression data derived from quantitative real-time PCR for the solute transporter carriers (SLCs) and the invasion-mediating matrix metalloproteinases (MMPs) were examined using a Linear Descriminant Analysis (LDA). The combination of MMP-7 and SLC5A8 was found to be the most predictive of CRC. Conclusion A combinatorial analysis technique is an effective method for both furthering our understanding on the molecular basis of some aspects of CRC, as well as for leveraging well defined cancer-related gene sets to identify cancer. In this instance, the combination of MMP-7 and SLC5A8 were optimal for identifying CRC.
- Published
- 2009
- Full Text
- View/download PDF
8. Changes Associated with Improved Outcomes for Cats Entering RSPCA Queensland Shelters from 2011 to 2016.
- Author
-
Kerr CA, Rand J, Morton JM, Reid R, and Paterson M
- Abstract
This retrospective study of cat admissions to RSPCA Queensland shelters describes changes associated with improved outcomes ending in live release in 2016 compared to 2011. There were 13,911 cat admissions in 2011 and 13,220 in 2016, with approximately 50% in both years admitted as strays from the general public or council contracts. In contrast, owner surrenders halved from 30% to 15% of admissions. Percentages of admissions ending in euthanasia decreased from 58% to 15%. Only 5% of cat admissions were reclaimed in each of these years, but the percentage rehomed increased from 34% to 74%, of which 61% of the increase was contributed by in-shelter adoptions and 39% from non-shelter sites, predominately retail partnerships. The percentage temporarily fostered until rehoming doubled. In 2011, euthanasias were most common for medical (32% of all euthanasias), behavioral (36%) and age/shelter number (30%) reasons, whereas in 2016, 69% of euthanasias were for medical reasons. The number of young kittens euthanized decreased from 1116 in 2011 to 22 in 2016. The number of cats classified as feral and euthanized decreased from 1178 to 132, in association with increased time for assessment of behavior and increased use of behavior modification programs and foster care. We attribute the improved cat outcomes to strategies that increased adoptions and reduced euthanasia of young kittens and poorly socialized cats, including foster programs. To achieve further decreases in euthanasia, strategies to decrease intake would be highly beneficial, such as those targeted to reduce stray cat admissions.
- Published
- 2018
- Full Text
- View/download PDF
9. Resistant starch alters colonic contractility and expression of related genes in rats fed a Western diet.
- Author
-
Patten GS, Kerr CA, Dunne RA, Shaw JM, Bird AR, Regina A, Morell MK, Lockett TJ, Molloy PL, Abeywardena MY, Topping DL, and Conlon MA
- Subjects
- Animals, Male, Rats, Rats, Sprague-Dawley, Zea mays, Diet, Western, Gastrointestinal Motility drug effects, Gastrointestinal Motility genetics, Gene Expression, Muscle Contraction drug effects, Muscle Contraction genetics, Muscle, Smooth drug effects, Starch pharmacology
- Abstract
Background and Aim: Dietary fiber shortens gut transit time, but data on the effects of fiber components (including resistant starch, RS) on intestinal contractility are limited. We have examined RS effects in male Sprague-Dawley rats fed either a high-amylose maize starch (HAMS) or a wholemeal made from high-amylose wheat (HAW) on ileal and colonic contractility ex vivo and expression of genes associated with smooth muscle contractility., Methods: Rats were fed diets containing 19 % fat, 20 % protein, and either low-amylose maize starch (LAMS), HAMS, wholemeal low-amylose wheat (LAW) or HAW for 11 week. Isolated ileal and proximal colonic sections were induced to contract electrically, or by receptor-independent (KCl) or receptor-dependent agents. Colonic gene expression was assessed using an Affymetrix microarray., Results: Ileal contractility was unaffected by treatment. Maximal proximal colonic contractility induced electrically or by angiotensin II or carbachol was lower for rats fed HAMS and LAW relative to those fed LAMS (P < 0.05). The colonic expression of genes, including cholinergic receptors (Chrm2, Chrm3), serotonin receptors (Htr5a, Htr7), a protease-activated receptor (F2r), a prokineticin receptor (Prokr1), prokineticin (Prok1), and nitric oxide synthase 2 (Nos2), was altered by dietary HAMS relative to LAMS (P < 0.05). HAW did not significantly affect these genes or colonic contractility relative to effects of LAMS., Conclusions: RS and other fiber components could influence colorectal health through modulation of stool transit time via effects on muscular contractility.
- Published
- 2015
- Full Text
- View/download PDF
10. Early life events influence whole-of-life metabolic health via gut microflora and gut permeability.
- Author
-
Kerr CA, Grice DM, Tran CD, Bauer DC, Li D, Hendry P, and Hannan GN
- Subjects
- Age Factors, Anti-Infective Agents pharmacology, Female, Humans, Infant, Infant, Newborn, Intestinal Mucosa immunology, Pregnancy, Tight Junctions physiology, Gastrointestinal Microbiome physiology, Gastrointestinal Tract microbiology, Intestinal Mucosa microbiology, Microbial Consortia physiology, Permeability
- Abstract
The capacity of our gut microbial communities to maintain a stable and balanced state, termed 'resilience', in spite of perturbations is vital to our achieving and maintaining optimal health. A loss of microbial resilience is observed in a number of diseases including obesity, diabetes and metabolic syndrome. There are large gaps in our understanding of why an individual's co-evolved microflora consortium fail to develop resilience thereby establishing a trajectory towards poor metabolic health. This review examines the connections between the developing gut microbiota and intestinal barrier function in the neonate, infant and during the first years of life. We propose that the effects of early life events on the gut microflora and permeability, whilst it is in a dynamic and vulnerable state, are fundamental in shaping the microbial consortia's resilience and that it is the maintenance of resilience that is pivotal for metabolic health throughout life. We review the literature supporting this concept suggesting new potential research directions aimed at developing a greater understanding of the longitudinal effects of the gut microflora on metabolic health and potential interventions to recalibrate the 'at risk' infant gut microflora in the direction of enhanced metabolic health.
- Published
- 2015
- Full Text
- View/download PDF
11. Gut permeability, its interaction with gut microflora and effects on metabolic health are mediated by the lymphatics system, liver and bile acid.
- Author
-
Tran CD, Grice DM, Wade B, Kerr CA, Bauer DC, Li D, and Hannan GN
- Subjects
- Dysbiosis physiopathology, Humans, Intestinal Mucosa physiology, Liver physiology, Lymphatic System physiology, Metabolic Syndrome, Obesity physiopathology, Permeability, Bile Acids and Salts physiology, Gastrointestinal Microbiome physiology, Gastrointestinal Tract metabolism, Gastrointestinal Tract microbiology
- Abstract
There is evidence to link obesity (and metabolic syndrome) with alterations in gut permeability and microbiota. The underlying mechanisms have been questioned and have prompted this review. We propose that the gut barrier function is a primary driver in maintaining metabolic health with poor health being linked to 'gut leakiness'. This review will highlight changes in intestinal permeability and how it may change gut microflora and subsequently affect metabolic health by influencing the functioning of major bodily organs/organ systems: the lymphatic system, liver and pancreas. We also discuss the likelihood that metabolic syndrome undergoes a cyclic worsening facilitated by an increase in intestinal permeability leading to gut dysbiosis, culminating in ongoing poor health leading to further exacerbated gut leakiness.
- Published
- 2015
- Full Text
- View/download PDF
12. Effects of three dehorning techniques on behavior and wound healing in feedlot cattle.
- Author
-
Neely CD, Thomson DU, Kerr CA, and Reinhardt CD
- Subjects
- Animals, Female, Housing, Animal, Male, Behavior, Animal, Cattle surgery, Horns surgery, Pain veterinary, Wound Healing physiology
- Abstract
Crossbred horned steers and heifers (n = 40; BW = 311.8 ± 4.7 kg) were used to determine the effect of dehorning methods on pain, cattle behavior, and wound healing. Cattle were blocked by weight and randomly assigned to 1 of 4 treatments: 1) control (CON), 2) banded using high tension elastic rubber (BAND), 3) mechanically removed (MECH), or 4) tipped (TIP). Vocalization and behavior were recorded during the dehorning process. Wound healing scores, attitude, gait and posture, appetite, and lying were recorded daily. Vocalization scores were highest for MECH cattle and BAND cattle vocalized more than TIP and CON (P < 0.05). Attitude (P = 0.06), gait and posture (P = 0.06), and lying scores (P < 0.05) were higher for BAND cattle in the days following procedures compared to MECH, TIP, and CON cattle. Cattle in the BAND treatment tended (P < 0.13) to have higher appetite scores than the other methods. Wound healing scores (horn bud and bleeding) were higher for BAND cattle than MECH, TIP, and CON cattle (P < 0.05). These data indicate that MECH is a painful procedure for cattle at the time of the procedure. Banding to remove horns from cattle is not recommended based on the data and observations from this study.
- Published
- 2014
- Full Text
- View/download PDF
13. Genomic homeostasis is dysregulated in favour of apoptosis in the colonic epithelium of the azoxymethane treated rat.
- Author
-
Kerr CA, Hines BM, Shaw JM, Dunne R, Bragg LM, Clarke J, Lockett T, and Head R
- Subjects
- Animals, Cell Cycle drug effects, Cell Cycle genetics, Colon metabolism, Colon pathology, DNA Damage drug effects, DNA Damage genetics, Gene Expression drug effects, Gene Expression genetics, Genomics methods, Homeostasis drug effects, Homeostasis genetics, Intestinal Mucosa metabolism, Male, Rats, Rats, Sprague-Dawley, Transcription, Genetic drug effects, Tumor Suppressor Protein p53 genetics, Apoptosis drug effects, Apoptosis genetics, Azoxymethane toxicity, Colon drug effects, Intestinal Mucosa drug effects
- Abstract
Background: The acute response to genotoxic carcinogens in rats is an important model for researching cancer initiation events. In this report we define the normal rat colonic epithelium by describing transcriptional events along the anterior-posterior axis and then investigate the acute effects of azoxymethane (AOM) on gene expression, with a particular emphasis on pathways associated with the maintenance of genomic integrity in the proximal and distal compartments using whole genome expression microarrays., Results: There are large transcriptional changes that occur in epithelial gene expression along the anterior-posterior axis of the normal healthy rat colon. AOM administration superimposes substantial changes on these basal gene expression patterns in both the distal and proximal rat colonic epithelium. In particular, the pathways associated with cell cycle and DNA damage and repair processes appear to be disrupted in favour of apoptosis., Conclusions: The healthy rats' colon exhibits extensive gene expression changes between its proximal and distal ends. The most common changes are associated with metabolism, but more subtle expression changes in genes involved in genomic homeostasis are also evident. These latter changes presumably protect and maintain a healthy colonic epithelium against incidental dietary and environmental insults. AOM induces substantial changes in gene expression, resulting in an early switch in the cell cycle process, involving p53 signalling, towards cell cycle arrest leading to the more effective process of apoptosis to counteract this genotoxic insult.
- Published
- 2013
- Full Text
- View/download PDF
14. Control of MicroRNA-21 expression in colorectal cancer cells by oncogenic epidermal growth factor/Ras signaling and Ets transcription factors.
- Author
-
Kern HB, Niemeyer BF, Parrish JK, Kerr CA, Yaghi NK, Prescott JD, Gutierrez-Hartmann A, and Jedlicka P
- Subjects
- Cell Line, Tumor, Colorectal Neoplasms metabolism, Epidermal Growth Factor metabolism, Humans, MicroRNAs metabolism, Oncogene Protein p21(ras) genetics, Oncogene Protein p21(ras) metabolism, Transcription, Genetic, Colorectal Neoplasms genetics, Gene Expression Regulation, Neoplastic, MicroRNAs genetics, Proto-Oncogene Proteins c-ets metabolism, Signal Transduction
- Abstract
MicroRNAs (miRs) are important regulators of gene expression in normal physiology and disease, and are widely misexpressed in cancer. A number of studies have identified miR-21 as an important promoter of oncogenesis. However, as is true of most miRs, the mechanisms behind the aberrant expression of miR-21 in cancer are poorly understood. Herein, we examine the regulation of miR-21 expression in colorectal cancer (CRC) cells by the oncogenic epidermal growth factor (EGF)/Ras pathway and by Ets transcription factors, modulators of epithelial oncogenesis that are frequently misexpressed in CRC. We show that EGF/Ras efficiently induces the miR-21 primary transcript, but this does not rapidly and simply translate into higher mature miR-21 levels. Rather, induction of mature miR-21 by constitutive activation of this pathway is slow, is associated with only minimal activation of mitogen-activated protein kinase, and may involve stimulation of post-transcriptional processing by mechanisms other than Dicer stabilization. We further identify Ets transcription factors as modifiers of miR-21 expression in CRC. The effects of Ets factors on miR-21 expression are cell context-dependent, and appear to involve both direct and indirect mechanisms. The Ets factor Pea3 emerges from our studies as a consistent repressor of miR-21 transcription. Overall, our studies identify a complex relationship between oncogenic pathways and steady-state miR-21 levels in CRC, and highlight the need for greater understanding of the control of miR expression in cancer and other disease states.
- Published
- 2012
- Full Text
- View/download PDF
15. HIV quality of care assessment at an academic hospital: outcomes and lessons learned.
- Author
-
Kerr CA, Neeman N, Davis RB, Schulze J, Libman H, Markson L, Aronson M, and Bell SK
- Subjects
- Antiretroviral Therapy, Highly Active standards, CD4 Lymphocyte Count standards, Databases, Factual, Female, Guideline Adherence, Humans, Male, Pharmacy Service, Hospital, Primary Health Care standards, Quality Improvement, Quality Indicators, Health Care, Academic Medical Centers standards, HIV Infections therapy, Quality Assurance, Health Care methods
- Abstract
Rapid changes in HIV treatment guidelines and antiretroviral therapy drug safety data add to the increasing complexity of caring for HIV-infected patients and amplify the need for continuous quality monitoring. The authors created an electronic HIV database of 642 patients who received care in the infectious disease (ID) and general medicine clinics in their academic center to monitor HIV clinical performance indicators. The main outcome measures of the study include process measures, including a description of how the database was constructed, and clinical outcomes, including HIV-specific quality improvement (QI) measures and primary care (PC) measures. Performance on HIV-specific QI measures was very high, but drug toxicity monitoring and PC-specific QI performance were deficient, particularly among ID specialists. Establishment of HIV QI data benchmarks as well as standards for how data will be measured and collected are needed and are the logical counterpart to treatment guidelines.
- Published
- 2012
- Full Text
- View/download PDF
16. Resistant starches protect against colonic DNA damage and alter microbiota and gene expression in rats fed a Western diet.
- Author
-
Conlon MA, Kerr CA, McSweeney CS, Dunne RA, Shaw JM, Kang S, Bird AR, Morell MK, Lockett TJ, Molloy PL, Regina A, Toden S, Clarke JM, and Topping DL
- Subjects
- Amylose pharmacology, Animal Feed, Animals, Bacteria growth & development, Colorectal Neoplasms epidemiology, Colorectal Neoplasms genetics, Dietary Carbohydrates pharmacology, Dietary Fiber pharmacology, Dietary Proteins pharmacology, Gene Expression physiology, Gene Expression Regulation, Neoplastic drug effects, Gene Expression Regulation, Neoplastic physiology, Male, Metagenome physiology, Rats, Rats, Sprague-Dawley, Risk Factors, Zea mays, Bacteria drug effects, Colon microbiology, Colon physiology, Colorectal Neoplasms prevention & control, DNA Damage physiology, Starch pharmacology
- Abstract
Resistant starch (RS), fed as high amylose maize starch (HAMS) or butyrylated HAMS (HAMSB), opposes dietary protein-induced colonocyte DNA damage in rats. In this study, rats were fed Western-type diets moderate in fat (19%) and protein (20%) containing digestible starches [low amylose maize starch (LAMS) or low amylose whole wheat (LAW)] or RS [HAMS, HAMSB, or a whole high amylose wheat (HAW) generated by RNA interference] for 11 wk (n = 10/group). A control diet included 7% fat, 13% protein, and LAMS. Colonocyte DNA single-strand breaks (SSB) were significantly higher (by 70%) in rats fed the Western diet containing LAMS relative to controls. Dietary HAW, HAMS, and HAMSB opposed this effect while raising digesta levels of SCFA and lowering ammonia and phenol levels. SSB correlated inversely with total large bowel SCFA, including colonic butyrate concentration (R(2) = 0.40; P = 0.009), and positively with colonic ammonia concentration (R(2) = 0.40; P = 0.014). Analysis of gut microbiota populations using a phylogenetic microarray revealed profiles that fell into 3 distinct groups: control and LAMS; HAMS and HAMSB; and LAW and HAW. The expression of colonic genes associated with the maintenance of genomic integrity (notably Mdm2, Top1, Msh3, Ung, Rere, Cebpa, Gmnn, and Parg) was altered and varied with RS source. HAW is as effective as HAMS and HAMSB in opposing diet-induced colonic DNA damage in rats, but their effects on the large bowel microbiota and colonocyte gene expression differ, possibly due to the presence of other fiber components in HAW.
- Published
- 2012
- Full Text
- View/download PDF
17. Reanalysis and simulation suggest a phylogenetic microarray does not accurately profile microbial communities.
- Author
-
Midgley DJ, Greenfield P, Shaw JM, Oytam Y, Li D, Kerr CA, and Hendry P
- Subjects
- Oligonucleotide Probes, Phylogeny, Oligonucleotide Array Sequence Analysis
- Abstract
The second generation (G2) PhyloChip is designed to detect over 8700 bacteria and archaeal and has been used over 50 publications and conference presentations. Many of those publications reveal that the PhyloChip measures of species richness greatly exceed statistical estimates of richness based on other methods. An examination of probes downloaded from Greengenes suggested that the system may have the potential to distort the observed community structure. This may be due to the sharing of probes by taxa; more than 21% of the taxa in that downloaded data have no unique probes. In-silico simulations using these data showed that a population of 64 taxa representing a typical anaerobic subterranean community returned 96 different taxa, including 15 families incorrectly called present and 19 families incorrectly called absent. A study of nasal and oropharyngeal microbial communities by Lemon et al (2010) found some 1325 taxa using the G2 PhyloChip, however, about 950 of these taxa have, in the downloaded data, no unique probes and cannot be definitively called present. Finally, data from Brodie et al (2007), when re-examined, indicate that the abundance of the majority of detected taxa, are highly correlated with one another, suggesting that many probe sets do not act independently. Based on our analyses of downloaded data, we conclude that outputs from the G2 PhyloChip should be treated with some caution, and that the presence of taxa represented solely by non-unique probes be independently verified.
- Published
- 2012
- Full Text
- View/download PDF
18. Splenosis and sepsis: The born-again spleen provides poor protection.
- Author
-
Connell NT, Brunner AM, Kerr CA, and Schiffman FJ
- Subjects
- Animals, Humans, Sepsis immunology, Sepsis microbiology, Sepsis surgery, Spleen anatomy & histology, Spleen immunology, Spleen physiopathology, Spleen surgery, Splenosis immunology, Splenosis surgery, Sepsis physiopathology, Splenosis physiopathology
- Abstract
Splenosis describes ectopic splenic tissue found in patients after rupture of the spleen. These implants are commonly located on the omentum but can be scattered throughout the body in varying number and size. Although splenosis was first documented over a century ago, the precise mechanism for its development remains unknown. The degree of immunoprotection offered by this tissue remains unclear. Much of the human data is in the form of case reports documenting failure of splenotic tissue to protect against septicemia. Even accessory spleens may not offer complete protection once the primary spleen is removed. This review of the literature demonstrates that no amount of splenosis should be considered protective against overwhelming post-splenectomy infection.
- Published
- 2011
- Full Text
- View/download PDF
19. The heritability of the expression of two stress-regulated gene fragments in pigs.
- Author
-
Kerr CA, Bunter KL, Seymour R, Shen B, and Reverter A
- Subjects
- Animals, Breeding, Environment, Genetic Markers, Housing, Animal, Reverse Transcriptase Polymerase Chain Reaction, Selection, Genetic, Swine growth & development, Gene Expression Profiling veterinary, Inheritance Patterns, Receptors, Calcitonin genetics, Swine genetics
- Abstract
Pigs reared in commercial production units sometimes encounter stressors that significantly decrease growth performance. It is hypothesized that response to stress challenges could potentially be used as selection criteria. This study aimed to investigate, in a commercial setting, the heritability of two target genes previously shown to be induced in response to stress, and related to growth performance, in an experimental situation. Blood samples (n = 2,392) were collected from three separate breeding lines of pedigreed and performance-tested boars between 24 to 25 wk of age. The expression levels of a novel fragment, '29a,' and the calcitonin receptor gene (CTR) were quantified using quantitative real-time PCR (qRT-PCR) on a subset (n = 709) of the blood samples. Gene expression levels were corrected for the efficiency of PCR reactions and also computed directly from threshold cycle (Ct) values. Resulting data showed a skewed nonnormal distribution of expression levels for the target genes relative to the endogenous control, glyceraldehyde-3-phosphate dehydrogenase (GAPDH), and were highly variable. Analyses were subsequently performed using untransformed and log-transformed data, with outliers identified and deleted in edited data sets. Regardless of the transformation or editing procedures for outliers applied, there was negligible genetic variation for the expression of target genes relative to GAPDH. In contrast, repeatabilities of replicate samples were generally high (between 0.54 and 0.67). Absolute expression levels for GAPDH and 29a were lowly heritable (h2 of about 0.04), although estimates did not exceed their SE. Subsetting the data according to whether the target gene had a higher or lower level of expression than GAPDH was then performed using the relevant Ct values. In the subset where the target gene was more highly expressed than GAPDH, a moderate estimate of heritability (0.18 +/- 0.10) for the log-transformed absolute expression level of 29a was obtained, whereas the estimate for its expression relative to GAPDH was lower (0.09 +/- 0.07). Estimates of heritability did not increase in the subset of low expression data. The limitations of using gene expression measures as potential selection criteria in commercial situations are discussed.
- Published
- 2005
- Full Text
- View/download PDF
20. Effects of grouping unfamiliar cohorts, high ambient temperature and stocking density on live performance of growing pigs.
- Author
-
Kerr CA, Giles LR, Jones MR, and Reverter A
- Subjects
- Animal Husbandry methods, Animals, Eating physiology, Heating adverse effects, Humidity, Least-Squares Analysis, Male, Population Density, Stress, Physiological physiopathology, Weight Gain physiology, Hot Temperature adverse effects, Housing, Animal, Stress, Physiological veterinary, Swine physiology
- Abstract
Ninety-six crossbred intact male pigs (34.5 +/- 3.5 kg BW) were allocated by weight and vocalization score to a 2 x 2 x 2 dynamic experimental design including two stocking densities (1 or 2 m(2)/pig), two temperatures (22 degrees C and 30 degrees C), and two short groupings of unfamiliar cohorts (six pigs as one pig per group, and six pigs per group). The study was conducted over 8 wk, and live weight gain (WTG) and feed intake (FI; as-fed basis) were measured weekly. During the first week, pigs were housed in individual pens from four independent rooms. To group pigs, pen partitions were removed. Pigs were grouped in Rooms 2 and 3 from wk 2 to 4, and in Rooms 1 and 4 during wk 7. Temperature was increased from 22 degrees C to 30 degrees C in Rooms 1 and 2 during wk 4 and 7. Pen partitions were replaced in Rooms 2 and 3 at the end of wk 4 and in Rooms 1 and 4 at the end of wk 7 to return pigs to their individual pens. Grouping pigs decreased FI during wk 3 (15.08 +/- 0.43 vs. 14.03 +/- 0.41 kg P < 0.10), and during wk 7 (17.42 +/- 0.46 vs. 14.24 +/- 0.41 kg; P < 0.01). In addition, grouping had a negative effect (P < 0.001) on WTG at wk 3 (7.38 +/- 0.28 vs. 5.71 +/- 0.28 kg) and at wk 7 (6.70 +/- 0.26 vs. 2.99 +/- 0.26 kg). For grouped pigs, raising the temperature decreased (P < 0.01) WTG (7.49 +/- 0.29 vs. 6.41 +/- 0.29 kg during wk 4, and 3.37 +/- 0.38 vs. 2.62 +/- 0.38 kg during wk 7). Mean FI was decreased (P < 0.01) with the 30 degrees C treatment during wk 7 only (15.49 +/- 0.33 kg at 22 degrees C compared with 12.99 +/- 0.33 kg at 30 degrees C). Compensatory feed intake was evident after the treatments had ceased at wk 6, whereby previously heat-treated grouped pigs had a higher FI (17.97 +/- 0.45 kg) than the animals individually housed at 22 degrees C (12.99 +/- 0.33 kg). Stocking density effects were noted after the grouping and high temperature treatments had ceased. For instance, during wk 5, low-density-housed pigs grew faster (P < 0.001) than their high-density counterparts (9.04 +/- 0.38 vs. 7.49 +/- 0.29 kg). In conclusion, under the conditions of this study, the grouping of unfamiliar cohorts and high ambient temperature treatments had a detrimental effect on pig performance, and these effects were reversible.
- Published
- 2005
- Full Text
- View/download PDF
21. A mixed-model approach for the analysis of cDNA microarray gene expression data from extreme-performing pigs after infection with Actinobacillus pleuropneumoniae.
- Author
-
Moser RJ, Reverter A, Kerr CA, Beh KJ, and Lehnert SA
- Subjects
- Actinobacillus Infections genetics, Actinobacillus Infections immunology, Actinobacillus pleuropneumoniae genetics, Animals, Bayes Theorem, Cluster Analysis, Gene Expression, Gene Expression Profiling, Genetic Variation, Leukocytes immunology, Male, Oligonucleotide Array Sequence Analysis methods, Oligonucleotide Array Sequence Analysis statistics & numerical data, Swine, Swine Diseases genetics, Actinobacillus Infections veterinary, Actinobacillus pleuropneumoniae immunology, Models, Genetic, Oligonucleotide Array Sequence Analysis veterinary, Swine Diseases immunology
- Abstract
We proposed a novel statistical approach for the analysis of cDNA experiments based on mixed-model methodology combined with mixtures of distributions. Our objective was to detect genes that may be involved in conferring heritable differences in susceptibility to common infections in intensive pig production. We employed a microarray expression profiling strategy and a mixed-model approach to the analysis of the expression data. A cDNA microarray of pig with 6,420 probes from immune tissues and cells was used to compare gene expression in peripheral blood leukocytes of two pigs showing extreme performance in their response to infection with Actinobacillus pleuropneumoniae. Principal components analyses were used to identify the two most extreme-performing pigs after infection (i.e., pigs whose measured responses to infection fell at the extremes). Blood samples and expression profiles from 0 to 24 h after infection were compared using a bivariate, mixed-model approach, in which the effect gene x immunological status interaction was treated as a random effect. Bayesian model-based clustering via mixtures of normal distributions of the resulting BLUP of the random interaction was approached and resulted in a list of 307 differentially expressed genes, of which 179 were down-regulated in the susceptible pig. The majority of the differentially expressed genes were derived from a cDNA library of leukocytes of A. pleuropneumoniae-challenged pigs that were subtracted against leukocytes before the challenge. These results provide evidence that the proposed statistical approach was useful in enhancing the knowledge of the mechanisms involved in the genetics of the immune response.
- Published
- 2004
- Full Text
- View/download PDF
22. Antisense oligonucleotide blockade of connexin expression during embryonic bone formation: evidence of functional compensation within a multigene family.
- Author
-
Minkoff R, Bales ES, Kerr CA, and Struss WE
- Subjects
- Animals, Chick Embryo, Connexin 43 genetics, Connexins genetics, Fluorescent Antibody Technique, Gene Expression, Mandible embryology, Mesoderm, Organ Culture Techniques, Connexin 43 physiology, Connexins physiology, Multigene Family, Oligonucleotides, Antisense pharmacology, Osteogenesis
- Abstract
Prior studies in our laboratory demonstrated the presence of gap junction proteins (connexins) throughout intramembranous bone formation [Minkoff et al. (1994) Anat Embryol 190:231-241]. In addition, two members of the connexin family of gap junction proteins, connexin 43 (Cx43; Gj alpha 1) and connexin 45 (Cx45; Gj alpha 6), were found by Civitelli et al. [1993; J Clin Invest 91:1888-1896] to be associated, specifically, with osteogenesis. Recently, however, a null mutation in the gene encoding Gj alpha 1 in mice has been produced by Reaume et al. [1995; Science 267:1831-1834]. Gj alpha 1 null homozygotes survived to term but died at birth of heart abnormalities. Examination of the null homozygous embryos, surprisingly, did not reveal overt histological or anatomical abnormalities in any organ system other than the heart. In view of this, the present investigation was initiated in order to evaluate bone formation under conditions in which the expression of Gj alpha 1 and Gj alpha 6, the connexins specifically associated with osteogenesis, had been perturbed, individually as well as in combination. An in vitro system employing organ cultures of dissociated embryonic chick mandibular mesenchyme was employed. Mesenchyme was cultured in the presence and absence of sense and antisense oligodeoxynucleotides (ODN), ranging in length from 15 to 24 mer and containing sequences that included the initiation codon of Gj alpha 1 and of Gj alpha 6. In cultures of mesenchyme, grown for 6 to 13 days in the presence of the combined antisense ODNs to Gj alpha 1 and Gj alpha 6, bone formation was markedly reduced or absent. By contrast, in cultures grown in medium containing the combination of corresponding sense ODNs to both Gj alpha 1 and Gj alpha 6, bone formation was evident. In addition, when cultures were grown in the presence of antisense or sense ODNs to either Gj alpha 1 or Gj alpha 6, individually, bone formation was seen. Immunohistochemical analysis of connexin expression revealed intense immunoreactive signal to Gj alpha 1 and Gj alpha 6 in bone of the control explants, in which no ODNs were present; in those cultures in which either Gj alpha 1 and Gj alpha 6 antisense ODNs were present, however, the expression of the respective connexin protein was either significantly reduced or absent. Further, in those explants in which Gj alpha 1 expression was blocked, immunoreactive signal to Gj alpha 6 appeared to have been amplified in regions of developing bone. These results suggest that, in avian osteogenic tissue, when Gj alpha 1 protein expression has been impeded another related connexin protein (Gj alpha 6) may subserve the functions of the missing connexin. The findings of this study, therefore, support the hypothesis that, within the connexin gene family, functional compensation can occur.
- Published
- 1999
- Full Text
- View/download PDF
23. Evaluation of potato proteins on the growth performance of early-weaned pigs.
- Author
-
Kerr CA, Goodband RD, Smith JW 2nd, Musser RE, Bergström JR, Nessmith WB Jr, Tokach MD, and Nelssen JL
- Subjects
- Amino Acids analysis, Animal Feed analysis, Animal Feed economics, Animals, Eating, Female, Male, Plant Proteins chemistry, Plant Proteins economics, Random Allocation, Weaning, Weight Gain, Animal Feed standards, Plant Proteins pharmacology, Solanum tuberosum, Swine growth & development
- Abstract
We conducted five experiments to evaluate conventional and low-glycoalkaloid potato protein (CPP and LGPP, respectively) in diets for early-weaned pigs. In Exp. 1, 150 weanling pigs (initially 4.4 +/- .9 kg and 15.5 +/- 2 d of age) were fed either a control diet containing 3% spray-dried animal plasma (SDAP) or diets with additional SDAP (2.5 or 5% added; 5.5 or 8% total) or CPP (2.6% or 5.1%) substituted on a total lysine basis. From d 0 to 14 after weaning, increasing SDAP increased (linear, P < .05) ADG and ADFI, whereas increasing CCP had no effect on growth performance. In Exp. 2, 180 weanling pigs (initially 5.9 +/- 1.2 kg and 20 +/- 2 d of age) were fed diets containing a LGPP replacing 25, 50, 75, or 100% of the 7% dietary SDAP on a digestible lysine basis. From d 0 to 7 after weaning, increasing LGPP increased and then returned to control levels ADG and ADFI (quadratic, P < .01) and gain:feed ratio (quadratic, P < .05). In Exp. 3, 175 weanling pigs (initially 5.5 +/- 1.1 kg and 20 +/- 3 d of age) were fed either a control diet containing 20% dried whey, 17.5% dried skim milk, and 4% select menhaden fish meal (SMFM) or diets consisting of lactose and either 3.5 and 7.0% SDAP or 4.0 and 8.0% LGPP added at the expense of dried skim milk on a digestible lysine basis. From d 0 to 7 after weaning, ADG and ADFI increased (linear, P < .05) with increasing SDAP. With increasing LGPP, ADG and ADFI increased and then decreased (quadratic, P < .10 and P < .05, respectively). Gain:feed ratio (G/F) was not affected by SDAP and was improved (linear, P < .05) for pigs fed increasing LGPP. In Exp. 4, 270 weanling pigs (initially 6.2 +/- 1.6 kg and 20 +/- 3 d of age) were used to compare three diets that contained either 2.5% spray-dried blood meal (SDBM), 4.8% SMFM, or 3.92% CPP; test feedstuffs were substituted on a total lysine basis and diets were fed from d 7 to 28 after weaning. Pigs fed CPP had decreased (P < .05) ADG and G/F compared with those fed the other protein sources. In Exp. 5, 255 weanling pigs (initially 5.3 +/- 1.2 kg and 17 +/- 2 d of age), were used to compare five diets that contained either 2.5% SDBM, 5.51% SMFM, 4.17% CPP, 4.17% LGPP or 8.34% LGPP; feedstuffs were substituted on a digestible lysine basis and diets were fed from d 7 to 28 after weaning. No differences (P > .10) were observed in growth performance among pigs fed any of the protein sources within the experiment. However, pigs fed the LGPP had numerically greater ADG and better G/F than those fed CPP. In conclusion, these results suggest that LGPP can be an effective replacement for a portion of the SDAP in diets for weanling pigs.
- Published
- 1998
- Full Text
- View/download PDF
24. Evaluation of enzymatically modified potato starches in diets for weanling pigs.
- Author
-
Kerr CA, Goodband RD, Tokach MD, Nelssen JL, Dritz SS, Richert BT, and Bergström JR
- Subjects
- Animals, Avena, Eating, Enzymes metabolism, Female, Flour, Food Handling, Lactose administration & dosage, Male, Random Allocation, Starch chemistry, Weaning, Weight Gain, Zea mays, Animal Feed standards, Diet veterinary, Dietary Carbohydrates administration & dosage, Solanum tuberosum, Starch administration & dosage, Swine growth & development
- Abstract
We conducted three growth trials to evaluate replacing carbohydrate sources with enzymatically modified potato starches in diets for weanling pigs. In Exp. 1, 180 pigs (initially 5.3 kg and 21+/-2 d of age) were used to compare the effects of corn (36.5%), edible-grade oat flour (36.5%), two enzymatically modified potato starches (12%), and added lactose (12%) on pig performance. Potato Starch 1 had a dextrose equivalent (DE) of 6 and Potato Starch 2 had a DE of 20; both were spray-dried maltodextrans. Pigs that were fed Potato Starch 2 had greater (P<.05) ADG and ADFI than pigs fed diets that contained corn or oat flour from d 0 to 14 after weaning, and pigs fed either Potato Starch 1 or added lactose had intermediate ADG and ADFI. However, for the overall trial (d 0 to 35), no differences (P>.10) in growth performance were observed. In Exp. 2, 198 pigs (initially 4.3 kg and 19+/-2 d of age) were used to determine whether modified Potato Starch 2 could replace a portion of the corn or lactose in the diet. The control diet contained 10% dried whey, and additional treatments were formulated by adding 7 or 14% modified Potato Starch 2 or lactose in place of corn. A positive control diet was formulated containing 29% dried whey. From d 0 to 14 after weaning, increasing dietary lactose improved (linear, P<.04) ADG and ADFI. Increasing the potato starch had no effect on ADG but increased ADFI (linear, P<.02). In Exp. 3, 180 pigs (initially 3.9 kg and 14+/-3 d of age) were used to evaluate Potato Starch 2 or 3 (DE = 30, a spray-dried glucose syrup) as replacements for either corn or lactose in the diet. Pigs were fed a control diet containing 15% dried whey and 12% added lactose. Twelve percent modified Potato Starch 2 or 3 replaced either corn or lactose in the diet on a wt/wt basis. From d 0 to 14 and d 0 to 21, pigs fed either modified potato starch substituted for corn had greater (P<.07) ADG than those fed the control diet. Pigs fed diets with either modified starch substituted for lactose had similar ADG as those fed the control diet. These results suggest that when substituted for corn, Potato Starch 2 can improve growth performance of weanling pigs.
- Published
- 1998
- Full Text
- View/download PDF
25. Evidence of multiple mechanisms of avermectin resistance in haemonchus contortus--comparison of selection protocols.
- Author
-
Gill JH, Kerr CA, Shoop WL, and Lacey E
- Subjects
- Animals, Anthelmintics administration & dosage, Drug Resistance, Haemonchiasis parasitology, Haemonchus growth & development, Ivermectin administration & dosage, Ivermectin pharmacology, Larva drug effects, Sheep, Anthelmintics pharmacology, Haemonchiasis veterinary, Haemonchus drug effects, Haemonchus isolation & purification, Ivermectin analogs & derivatives, Sheep Diseases parasitology
- Abstract
Three isolates of Haemonchus contortus selected for avermectin resistance in sheep were compared in three in vitro pharmacological tests previously shown to discriminate between field isolates of H. contortus resistant and susceptible to the avermectins. Two isolates, F7-A and IVC, were selected for avermectin resistance in the laboratory from a reference susceptible isolate using suboptimal doses of ivermectin (LD95) for 7 and 16 generations, respectively. In these isolates avermectin resistance was not associated with a decreased sensitivity to avermectin inhibition of larval development or L3 motility but was associated with an increased sensitivity to paraherquamide. The third isolate, Warren, was derived from an overwhelmingly avermectin-susceptible, mixed species field isolate in a single generation by propagating the small number of survivors of a 0.2 mg/kg ivermectin treatment (i.e. 10 x LD95). This isolate, like previously characterised avermectin-resistant H. contortus isolates derived from the field in South Africa and Australia, showed a markedly reduced sensitivity to avermectin inhibition of larval development and L3 motility, as well as an increased sensitivity to paraherquamide. These results suggest that avermectin resistance can manifest itself in different ways and that the two selection protocols used to generate the F7-A, IVC and Warren isolates have resulted in the selection of different resistance phenotypes.
- Published
- 1998
- Full Text
- View/download PDF
26. Optimization of targeted RNA recombination and mapping of a novel nucleocapsid gene mutation in the coronavirus mouse hepatitis virus.
- Author
-
Masters PS, Koetzner CA, Kerr CA, and Heo Y
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Clone Cells, Defective Viruses genetics, Mice, Molecular Sequence Data, Mutation genetics, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Viral Matrix Proteins genetics, Capsid genetics, Chromosome Mapping methods, Genes, Viral, Murine hepatitis virus genetics, RNA, Viral genetics, Recombination, Genetic, Viral Core Proteins genetics
- Abstract
We have recently described a method of introducing site-specific mutations into the genome of the coronavirus mouse hepatitis virus (MHV) by RNA recombination between cotransfected genomic RNA and a synthetic subgenomic mRNA (C. A. Koetzner, M. M. Parker, C. S. Ricard, L. S. Sturman, and P. S. Masters, J. Virol. 66:1841-1848, 1992). By using a thermolabile N protein mutant of MHV (Alb4) as the recipient virus and synthetic RNA7 (the mRNA for the nucleocapsid protein N) as the donor, we selected engineered recombinant viruses as heat-stable progeny resulting from cotransfection. We have now been able to greatly increase the efficiency of targeted recombination in this process by using a synthetic defective interfering (DI) RNA in place of RNA7. The frequency of recombination is sufficiently high that, with Alb4 as the recipient, recombinants can be directly identified without using thermal selection. The synthetic DI RNA has been used to demonstrate that the lesion in another temperature-sensitive and thermolabile MHV mutant, Alb1, maps to the N gene. Sequencing of the Alb1 N gene revealed two closely linked point mutations that fall in a region of the N molecule previously noted as being the most highly conserved region among all of the coronavirus N proteins. Analysis of revertants of the Alb1 mutant revealed that one of the two mutations is critical for the temperature-sensitive phenotype; the second mutation is phenotypically silent.
- Published
- 1994
- Full Text
- View/download PDF
27. Populations, practices, and problems in forensic psychiatric facilities.
- Author
-
Kerr CA and Roth JA
- Subjects
- Adolescent, Adult, Data Collection, Humans, United States, Forensic Psychiatry, Hospitals, Psychiatric, Hospitals, Public, Insanity Defense, Mental Health Services
- Abstract
This is a study of the public facilities to which mentally disordered offenders are committed or transferred so that they may be securely confined while simultaneously participating in programs designed for treatment of their mental disorders. The study focuses principally on the nature and characteristics of these facilities: their patient populations, staff, security conditions, treatment programs, and operational programs. We identified and surveyed 231 facilities. The information from the survey, legal research, and site visits to 11 programs has been integrated and used to address four major issues: the types of facilities mentally disordered offenders are institutionalized in for treatment of their mental disorders; the legal, diagnostic, and demographic characteristics of the residents of these facilities; the forms of treatment and levels of staffing available in these facilities; and the common problems faced by facility administrators with respect to facility management, treatment, and release decisions.
- Published
- 1986
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.