238 results on '"Kenneth D. Harris"'
Search Results
2. Innovative Energy Storage Smart Windows Relying on Mild Aqueous Zn/MnO2 Battery Chemistry
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Hamid Palamadathil Kannattil, Lluis Martinez Soria Gallo, Kenneth D. Harris, Benoît Limoges, and Véronique Balland
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aqueous battery ,electrochromic battery ,reversible metal electrodeposition ,reversible zinc electrodeposition ,Science - Abstract
Abstract Rechargeable mild aqueous Zn/MnO2 batteries are currently attracting great interest thanks to their appealing performance/cost ratio. Their operating principle relies on two complementary reversible electrodeposition reactions at the anode and cathode. Transposing this operating principle to transparent conductive windows remains an unexplored facet of this battery chemistry, which is proposed here to address with the development of an innovative bifunctional smart window, combining electrochromic and charge storage properties. The proof‐of‐concept of such bifunctional Zn/MnO2 smart window is provided using a mild buffered aqueous electrolyte and different architectures. To maximize the device's performance, transparent nanostructured ITO cathodes are used to reversibly electrodeposit a high load of MnO2 (up to 555 mA h m−2 with a CE of 99.5% over 200 cycles, allowing to retrieve an energy density as high as 860 mA h m−2 when coupled with a zinc metal frame), while flat transparent FTO anodes are used to reversibly electrodeposit an homogenous coating of zinc metal (up to ≈280 mA h m−2 with a CE > 95% over 50 cycles). The implementation of these two reversible electrodeposition processes in a single smart window has been successfully achieved, leading for the first time to a dual‐tinting energy storage smart window with an optimized face‐to‐face architecture.
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- 2024
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3. A spatially-resolved transcriptional atlas of the murine dorsal pons at single-cell resolution
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Stefano Nardone, Roberto De Luca, Antonino Zito, Nataliya Klymko, Dimitris Nicoloutsopoulos, Oren Amsalem, Cory Brannigan, Jon M. Resch, Christopher L. Jacobs, Deepti Pant, Molly Veregge, Harini Srinivasan, Ryan M. Grippo, Zongfang Yang, Mark L. Zeidel, Mark L. Andermann, Kenneth D. Harris, Linus T. Tsai, Elda Arrigoni, Anne M. J. Verstegen, Clifford B. Saper, and Bradford B. Lowell
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Science - Abstract
Abstract The “dorsal pons”, or “dorsal pontine tegmentum” (dPnTg), is part of the brainstem. It is a complex, densely packed region whose nuclei are involved in regulating many vital functions. Notable among them are the parabrachial nucleus, the Kölliker Fuse, the Barrington nucleus, the locus coeruleus, and the dorsal, laterodorsal, and ventral tegmental nuclei. In this study, we applied single-nucleus RNA-seq (snRNA-seq) to resolve neuronal subtypes based on their unique transcriptional profiles and then used multiplexed error robust fluorescence in situ hybridization (MERFISH) to map them spatially. We sampled ~1 million cells across the dPnTg and defined the spatial distribution of over 120 neuronal subtypes. Our analysis identified an unpredicted high transcriptional diversity in this region and pinpointed the unique marker genes of many neuronal subtypes. We also demonstrated that many neuronal subtypes are transcriptionally similar between humans and mice, enhancing this study’s translational value. Finally, we developed a freely accessible, GPU and CPU-powered dashboard ( http://harvard.heavy.ai:6273/ ) that combines interactive visual analytics and hardware-accelerated SQL into a data science framework to allow the scientific community to query and gain insights into the data.
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- 2024
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4. Robust and flexible electrochemical lactate sensors for sweat analysis based on nanozyme-enhanced electrode
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Pei Li, Pramod K. Kalambate, Kenneth D. Harris, Abebaw B. Jemere, and Xiaowu (Shirley) Tang
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Lactate sensor ,Electrochemical sensor ,Sweat sample ,Nanozyme ,NiO ,Glancing angle deposition (GLAD) ,Biotechnology ,TP248.13-248.65 - Abstract
In this work, nickel oxide (NiO) nanostructures deposited by glancing angle deposition (GLAD) are fabricated to achieve highly specific catalytic electrooxidation of lactate, replacing the natural enzyme lactate oxidase for electrochemical detection of lactate in sweat. GLAD NiO electrodes exhibit high sensitivity (412 μA mM−1 cm−2), wide linear detection range (1–45 mM), low detection limit (3 μM), and excellent specificity in artificial sweat samples. The unique microporous structure of the GLAD NiO electrodes, combined with their high surface area, high catalytic activity, and excellent conductivity, enhance the performance of the sensor and demonstrate their exceptional effectiveness in the sensitive detection of lactate. In-house fabricated gold counter, and stable solid-state Ag/AgCl reference electrodes, all fabricated on a flexible PET substrate along with the GLAD NiO working electrode, demonstrate performance comparable to commercial Pt auxiliary and Ag/AgCl (1M KCl) reference electrodes in lactate detection, along with outstanding flexibility, tested at various radii of curvature (15 mm, 7.5 mm, and 5 mm). The durable and long-lasting GLAD NiO electrode chips overcome numerous challenges in transport, storage, and operation, paving the way for the development of wearable lactate sensors that can detect lactate levels in sweat.
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- 2024
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5. Peroxidase-Like Behavior of Ni Thin Films Deposited by Glancing Angle Deposition for Enzyme-Free Uric Acid Sensing
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Anuja Tripathi, Kenneth D. Harris, and Anastasia L. Elias
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Chemistry ,QD1-999 - Published
- 2020
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6. Hippocampal CA1 Somatostatin Interneurons Originate in the Embryonic MGE/POA
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Zeinab Asgarian, Lorenza Magno, Niki Ktena, Kenneth D. Harris, and Nicoletta Kessaris
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Medicine (General) ,R5-920 ,Biology (General) ,QH301-705.5 - Abstract
Summary: Oriens lacunosum-moleculare (O-LM) interneurons constitute 40% of hippocampal interneurons expressing Somatostatin (SST). Recent evidence has indicated a dual origin for these cells in the medial and caudal ganglionic eminences (MGE and CGE), with expression of Htr3a as a distinguishing factor. This is strikingly different from cortical SST interneurons that have a single origin within the MGE/preoptic area (POA). We reassessed the origin of hippocampal SST interneurons using a range of genetic lineage-tracing mice combined with single-cell transcriptomic analysis. We find a common origin for all hippocampal SST interneurons in NKX2-1-expressing progenitors of the telencephalic neuroepithelium and an MGE/POA-like transcriptomic signature for all SST clusters. This suggests that functional heterogeneity within the SST CA1 population cannot be attributed to a differential MGE/CGE genetic origin. : In this article, Kessaris and colleagues combine genetic lineage tracing and single-cell transcriptomic analysis to identify the embryonic origin of hippocampal CA1 Somatostatin interneurons. They report a common origin in the medial ganglionic eminence/preoptic area from neuroepithelial precursors expressing NKX2-1. Keywords: Somatostatin, hippocampus, O-LM, fate-mapping, embryonic origin, single-cell sequencing, interneurons
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- 2019
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7. Effects of Arousal on Mouse Sensory Cortex Depend on Modality
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Daisuke Shimaoka, Kenneth D. Harris, and Matteo Carandini
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Biology (General) ,QH301-705.5 - Abstract
Summary: Changes in arousal modulate the activity of mouse sensory cortex, but studies in different mice and different sensory areas disagree on whether this modulation enhances or suppresses activity. We measured this modulation simultaneously in multiple cortical areas by imaging mice expressing voltage-sensitive fluorescent proteins (VSFP). VSFP imaging estimates local membrane potential across large portions of cortex. We used temporal filters to predict local potential from running speed or from pupil dilation, two measures of arousal. The filters provided good fits and revealed that the effects of arousal depend on modality. In the primary visual cortex (V1) and auditory cortex (Au), arousal caused depolarization followed by hyperpolarization. In the barrel cortex (S1b) and a secondary visual area (LM), it caused only hyperpolarization. In all areas, nonetheless, arousal reduced the phasic responses to trains of sensory stimuli. These results demonstrate diverse effects of arousal across sensory cortex but similar effects on sensory responses. : Shimaoka et al. use voltage-sensitive imaging to show that the effects of arousal on the mouse cortex are markedly different across areas and over time. In all the sensory areas studied, nonetheless, arousal reduced the phasic voltage responses to trains of sensory stimuli. Keywords: cerebral cortex, cortical state, locomotion, sensory processing, widefield imaging
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- 2018
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8. High-Yield Methods for Accurate Two-Alternative Visual Psychophysics in Head-Fixed Mice
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Christopher P. Burgess, Armin Lak, Nicholas A. Steinmetz, Peter Zatka-Haas, Charu Bai Reddy, Elina A.K. Jacobs, Jennifer F. Linden, Joseph J. Paton, Adam Ranson, Sylvia Schröder, Sofia Soares, Miles J. Wells, Lauren E. Wool, Kenneth D. Harris, and Matteo Carandini
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Biology (General) ,QH301-705.5 - Abstract
Research in neuroscience increasingly relies on the mouse, a mammalian species that affords unparalleled genetic tractability and brain atlases. Here, we introduce high-yield methods for probing mouse visual decisions. Mice are head-fixed, facilitating repeatable visual stimulation, eye tracking, and brain access. They turn a steering wheel to make two alternative choices, forced or unforced. Learning is rapid thanks to intuitive coupling of stimuli to wheel position. The mouse decisions deliver high-quality psychometric curves for detection and discrimination and conform to the predictions of a simple probabilistic observer model. The task is readily paired with two-photon imaging of cortical activity. Optogenetic inactivation reveals that the task requires mice to use their visual cortex. Mice are motivated to perform the task by fluid reward or optogenetic stimulation of dopamine neurons. This stimulation elicits a larger number of trials and faster learning. These methods provide a platform to accurately probe mouse vision and its neural basis.
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- 2017
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9. On 1/n neural representation and robustness.
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Josue Nassar, Piotr A. Sokól, SueYeon Chung, Kenneth D. Harris, and Il Memming Park
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- 2020
10. High-dimensional geometry of population responses in visual cortex.
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Carsen Stringer, Marius Pachitariu, Nicholas A. Steinmetz, Matteo Carandini, and Kenneth D. Harris
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- 2019
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11. Sensory coding and the causal impact of mouse cortex in a visual decision
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Peter Zatka-Haas, Nicholas A Steinmetz, Matteo Carandini, and Kenneth D Harris
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decision making ,cortex ,optogenetics ,perceptual decisions ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Correlates of sensory stimuli and motor actions are found in multiple cortical areas, but such correlates do not indicate whether these areas are causally relevant to task performance. We trained mice to discriminate visual contrast and report their decision by steering a wheel. Widefield calcium imaging and Neuropixels recordings in cortex revealed stimulus-related activity in visual (VIS) and frontal (MOs) areas, and widespread movement-related activity across the whole dorsal cortex. Optogenetic inactivation biased choices only when targeted at VIS and MOs,proportionally to each site's encoding of the visual stimulus, and at times corresponding to peak stimulus decoding. A neurometric model based on summing and subtracting activity in VIS and MOs successfully described behavioral performance and predicted the effect of optogenetic inactivation. Thus, sensory signals localized in visual and frontal cortex play a causal role in task performance, while widespread dorsal cortical signals correlating with movement reflect processes that do not play a causal role.
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- 2021
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12. Spatial modulation of visual responses arises in cortex with active navigation
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E Mika Diamanti, Charu Bai Reddy, Sylvia Schröder, Tomaso Muzzu, Kenneth D Harris, Aman B Saleem, and Matteo Carandini
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LGN ,V1 ,higher visual areas ,navigation ,spatial modulation ,visual processing ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
During navigation, the visual responses of neurons in mouse primary visual cortex (V1) are modulated by the animal’s spatial position. Here we show that this spatial modulation is similarly present across multiple higher visual areas but negligible in the main thalamic pathway into V1. Similar to hippocampus, spatial modulation in visual cortex strengthens with experience and with active behavior. Active navigation in a familiar environment, therefore, enhances the spatial modulation of visual signals starting in the cortex.
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- 2021
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13. Coherent encoding of subjective spatial position in visual cortex and hippocampus.
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Aman B. Saleem, E. Mika Diamanti, Julien Fournier, Kenneth D. Harris, and Matteo Carandini
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- 2018
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14. Fast and accurate spike sorting of high-channel count probes with KiloSort.
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Marius Pachitariu, Nicholas A. Steinmetz, Shabnam N. Kadir, Matteo Carandini, and Kenneth D. Harris
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- 2016
15. Characterizing the invariances of learning algorithms using category theory.
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Kenneth D. Harris
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- 2019
16. The impact of bilateral ongoing activity on evoked responses in mouse cortex
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Daisuke Shimaoka, Nicholas A Steinmetz, Kenneth D Harris, and Matteo Carandini
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cortex ,ongoing ,variability ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
In the absence of external stimuli or overt behavior, the activity of the left and right cortical hemispheres shows fluctuations that are largely bilateral. Here, we show that these fluctuations are largely responsible for the variability observed in cortical responses to sensory stimuli. Using widefield imaging of voltage and calcium signals, we measured activity in the cortex of mice performing a visual detection task. Bilateral fluctuations invested all areas, particularly those closest to the midline. Activity was less bilateral in the monocular region of primary visual cortex and, especially during task engagement, in secondary motor cortex. Ongoing bilateral fluctuations dominated unilateral visual responses, and interacted additively with them, explaining much of the variance in trial-by-trial activity. Even though these fluctuations occurred in regions necessary for the task, they did not affect detection behavior. We conclude that bilateral ongoing activity continues during visual stimulation and has a powerful additive impact on visual responses.
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- 2019
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17. Mouse frontal cortex nonlinearly encodes sensory, choice and outcome signals
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Lauren E. Wool, Armin Lak, Matteo Carandini, and Kenneth D. Harris
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Frontal area MOs (secondary motor area) is a key brain structure in rodents for making decisions based on sensory evidence and on reward value. In behavioral tasks, its neurons can encode sensory stimuli, upcoming choices, expected rewards, ongoing actions, and recent outcomes. However, the information encoded, and the nature of the resulting code, may depend on the task being performed. We recorded MOs population activity using two-photon calcium imaging, in a task requiring mice to integrate sensory evidence with reward value. Mice turned a wheel to report the location of a visual stimulus following a delay period, to receive a reward whose size varied over trial blocks. MOs neurons encoded multiple task variables, but not all of those seen in other tasks. In the delay period, the MOs population strongly encoded the stimulus side but did not significantly encode the reward-size block. A correlation of MOs activity with upcoming choice could be explained by a common effect of stimulus on those two correlates. After the wheel turn and the feedback, the MOs population encoded choice side and choice outcome jointly and nonlinearly according to an exclusive-or (XOR) operation. This nonlinear operation would allow a downstream linear decoder to infer the correct choice side (i.e., the side that would have been rewarded) even on zero contrast trials, when there had been no visible stimulus. These results indicate that MOs neurons flexibly encode some but not all variables that determine behavior, depending on task. Moreover, they reveal that MOs activity can reflect a nonlinear combination of these behavioral variables, allowing simple linear inference of task events that would not have been directly observable.
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- 2023
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18. Community-based benchmarking improves spike rate inference from two-photon calcium imaging data.
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Philipp Berens, Jeremy Freeman, Thomas Deneux, Nicolay Chenkov, Thomas McColgan, Artur Speiser, Jakob H. Macke, Srinivas C. Turaga, Patrick J. Mineault, Peter Rupprecht, Stephan Gerhard, Rainer W. Friedrich, Johannes Friedrich, Liam Paninski, Marius Pachitariu, Kenneth D. Harris, Ben Bolte, Timothy A. Machado, Dario Ringach, Jasmine Stone, Luke E. Rogerson, Nicolas J. Sofroniew, Jacob Reimer, Emmanouil Froudarakis, Thomas Euler, Miroslav Román Rosón, Lucas Theis, Andreas S. Tolias, and Matthias Bethge
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- 2018
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19. Impact of Reversible Proton Insertion on the Electrochemistry of Electrode Materials Operating in Mild Aqueous Electrolytes: A Case Study with TiO 2
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Nikolina Makivić, Kenneth D. Harris, Jean‐Marie Tarascon, Benoît Limoges, Véronique Balland, Laboratoire d'Electrochimie Moléculaire (LEM (UMR_7591)), Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité), Réseau sur le stockage électrochimique de l'énergie (RS2E), Aix Marseille Université (AMU)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Collège de France (CdF (institution))-Université de Picardie Jules Verne (UPJV)-Ecole Nationale Supérieure de Chimie de Paris - Chimie ParisTech-PSL (ENSCP), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Pau et des Pays de l'Adour (UPPA)-Institut de Chimie du CNRS (INC)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Institut polytechnique de Grenoble - Grenoble Institute of Technology (Grenoble INP ), Université Grenoble Alpes (UGA)-Université Grenoble Alpes (UGA)-Nantes Université (Nantes Univ)-Université de Montpellier (UM)-Ecole Nationale Supérieure de Chimie de Montpellier (ENSCM), Université de Montpellier (UM), Collège de France - Chaire Chimie du solide et énergie, Chimie du solide et de l'énergie (CSE), and Collège de France (CdF (institution))-Institut de Chimie du CNRS (INC)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Collège de France (CdF (institution))-Institut de Chimie du CNRS (INC)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)
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Renewable Energy, Sustainability and the Environment ,General Materials Science ,[CHIM.MATE]Chemical Sciences/Material chemistry - Published
- 2023
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20. Decision and navigation in mouse parietal cortex
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Michael Krumin, Julie J Lee, Kenneth D Harris, and Matteo Carandini
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cortex ,navigation ,decision ,visual processing ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Posterior parietal cortex (PPC) has been implicated in navigation, in the control of movement, and in visually-guided decisions. To relate these views, we measured activity in PPC while mice performed a virtual navigation task driven by visual decisions. PPC neurons were selective for specific combinations of the animal's spatial position and heading angle. This selectivity closely predicted both the activity of individual PPC neurons, and the arrangement of their collective firing patterns in choice-selective sequences. These sequences reflected PPC encoding of the animal’s navigation trajectory. Using decision as a predictor instead of heading yielded worse fits, and using it in addition to heading only slightly improved the fits. Alternative models based on visual or motor variables were inferior. We conclude that when mice use vision to choose their trajectories, a large fraction of parietal cortex activity can be predicted from simple attributes such as spatial position and heading.
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- 2018
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21. Supervised learning with decision margins in pools of spiking neurons.
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Charlotte Le Mouel, Kenneth D. Harris, and Pierre Yger
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- 2014
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22. High-Dimensional Cluster Analysis with the Masked EM Algorithm.
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Shabnam N. Kadir, Dan F. M. Goodman, and Kenneth D. Harris
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- 2014
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23. Dopamine Axons in Dorsal Striatum Encode Contralateral Visual Stimuli and Choices
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Kenneth D. Harris, Peter Zatka-Haas, Armin Lak, Morgane M Moss, and Matteo Carandini
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Male ,Visual perception ,Eye Movements ,genetic structures ,Dopamine ,Sensory system ,Striatum ,Stimulus (physiology) ,Biology ,Choice Behavior ,Article ,Midbrain ,Mice ,Nerve Fibers ,Reward ,medicine ,Animals ,Dominance, Cerebral ,Dopaminergic Neurons ,General Neuroscience ,Dopaminergic ,Ventral striatum ,Association Learning ,Axons ,Corpus Striatum ,Mice, Inbred C57BL ,medicine.anatomical_structure ,nervous system ,Female ,Neuroscience ,Photic Stimulation ,medicine.drug - Abstract
The striatum plays critical roles in visually-guided decision-making and receives dense axonal projections from midbrain dopamine neurons. However, the roles of striatal dopamine in visual decision-making are poorly understood. We trained male and female mice to perform a visual decision task with asymmetric reward payoff, and we recorded the activity of dopamine axons innervating striatum. Dopamine axons in the dorsomedial striatum (DMS) responded to contralateral visual stimuli and contralateral rewarded actions. Neural responses to contralateral stimuli could not be explained by orienting behavior such as eye movements. Moreover, these contralateral stimulus responses persisted in sessions where the animals were instructed to not move to obtain reward, further indicating that these signals are stimulus-related. Lastly, we show that DMS dopamine signals were qualitatively different from dopamine signals in the ventral striatum (VS), which responded to both ipsilateral and contralateral stimuli, conforming to canonical prediction error signaling under sensory uncertainty. Thus, during visual decisions, DMS dopamine encodes visual stimuli and rewarded actions in a lateralized fashion, and could facilitate associations between specific visual stimuli and actions. SIGNIFICANCE STATEMENT While the striatum is central to goal-directed behavior, the precise roles of its rich dopaminergic innervation in perceptual decision-making are poorly understood. We found that in a visual decision task, dopamine axons in the dorsomedial striatum (DMS) signaled stimuli presented contralaterally to the recorded hemisphere, as well as the onset of rewarded actions. Stimulus-evoked signals persisted in a no-movement task variant. We distinguish the patterns of these signals from those in the ventral striatum (VS). Our results contribute to the characterization of region-specific dopaminergic signaling in the striatum and highlight a role in stimulus-action association learning.
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- 2021
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24. Impact of reversible proton insertion on the electrochemistry of electrode materials operating in mild aqueous electrolytes: a case study with TiO2
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Benoît Limoges, Véronique Balland, Nikolina Makivic, Jean-Marie Tarascon, and Kenneth D. Harris
- Abstract
Near-neutral aqueous electrolytes are to be preferred for the development of sustainable electrochemical energy conversion and storage devices. Protons are inherent to these electrolytes and their reactivity towards the electrode material extends beyond their own reduction, especially when reversible proton insertion takes place in the bulk electrode material from acidic or buffered electrolytes. However, a still burning question regards whether reversible proton insertion persists when working in unbuffered mild aqueous electrolytes, and if so, with which consequences on the functioning of the electrode material. Here, we address this issue by examining TiO2 as a model insertion electrode in a range of mild aqueous electrolytes. Through a combination of experiments, modelling and multiphysics simulations, we demonstrate that, in a KCl-based electrolyte, water acts as proton donor to support reversible insertion of protons in TiO2, while in a NH4Cl-based aqueous electrolyte, the proton donor is NH4+. Moreover, we establish that strong pH gradients develop at the electrode interface during proton insertion/disinsertion, highlighting their dependence on the proton donor/acceptor and rationalizing their impact on the electrode voltage. Overall, this work provides a comprehensive framework of proton-insertion coupled electron transfer (PICET) that can be easily generalised to other electrode materials.
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- 2022
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25. Requirements for storing electrophysiology data.
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Friedrich T. Sommer, Thomas Wachtler, Jeffrey L. Teeters, Jan Benda, Andrew P. Davison, Stephen J. Eglen, Richard C. Gerkin, Jeffrey S. Grethe, Jan Grewe, Kenneth D. Harris, Christian Johannes Kellner, Yann Le Franc, Roman Moucek, Dimiter Prodanov, Robert Pröpper, Hyrum L. Sessions, Leslie Smith, Andrey Sobolev, Adrian Stoewer, and Barry Wark
- Published
- 2016
26. Methods for predicting cortical UP and DOWN states from the phase of deep layer local field potentials.
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Aman B. Saleem, Paul Chadderton, John Apergis-Schoute, Kenneth D. Harris, and Simon R. Schultz
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- 2010
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27. Inhibitory control of correlated intrinsic variability in cortical networks
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Carsen Stringer, Marius Pachitariu, Nicholas A Steinmetz, Michael Okun, Peter Bartho, Kenneth D Harris, Maneesh Sahani, and Nicholas A Lesica
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Gerbil ,neural networks ,inhibition ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Cortical networks exhibit intrinsic dynamics that drive coordinated, large-scale fluctuations across neuronal populations and create noise correlations that impact sensory coding. To investigate the network-level mechanisms that underlie these dynamics, we developed novel computational techniques to fit a deterministic spiking network model directly to multi-neuron recordings from different rodent species, sensory modalities, and behavioral states. The model generated correlated variability without external noise and accurately reproduced the diverse activity patterns in our recordings. Analysis of the model parameters suggested that differences in noise correlations across recordings were due primarily to differences in the strength of feedback inhibition. Further analysis of our recordings confirmed that putative inhibitory neurons were indeed more active during desynchronized cortical states with weak noise correlations. Our results demonstrate that network models with intrinsically-generated variability can accurately reproduce the activity patterns observed in multi-neuron recordings and suggest that inhibition modulates the interactions between intrinsic dynamics and sensory inputs to control the strength of noise correlations.
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- 2016
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28. Thermally-Degradable Thermoset Adhesive Based on a Cellulose Nanocrystals/Epoxy Nanocomposite
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Andrew J. Myles, Jung-Soo Kang, and Kenneth D. Harris
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thermally degradable adhesives ,Nanocomposite ,Materials science ,Polymers and Plastics ,Polymer nanocomposite ,Process Chemistry and Technology ,fungi ,Organic Chemistry ,food and beverages ,Thermosetting polymer ,Epoxy ,mechanical properties ,epoxy ,polymer nanocomposites ,Cellulose nanocrystals ,visual_art ,visual_art.visual_art_medium ,Adhesive ,Composite material ,cellulose nanocrystals ,Reusability - Abstract
For high-value components, reusability is often an important design consideration. For adhesively joined parts, the disassembly mechanism can be a key factor, and in some cases the thermal degradability of adhesives determines the reusability and recyclability of the components. After use, components that can be easily separated are generally more easily reused, but this requires controlled and well-understood adhesive degradation. Here, polymer nanocomposites based on epoxy resin and cellulose nanocrystals (CNCs) were fabricated, and their properties were examined as degradable adhesives. The distribution of CNCs within the epoxy resin was investigated by electron microscopy and mass spectroscopy. By incorporating CNCs into epoxy matrices, the shear strength of nanocomposites was improved by 31% and the effective thermal degradation temperature was reduced by 40 °C. Additionally, chemical analysis by X-ray photoelectron spectroscopy showed that sulfonate groups on the surface of CNCs play a critical role over improving the mechanical properties, while thermally induced breakage of these bonds mediates the thermal degradation of the nanocomposite.
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- 2020
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29. Disruption of VGLUT1 in Cholinergic Medial Habenula Projections Increases Nicotine Self-Administration
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Elizabeth A. Souter, Yen-Chu Chen, Vivien Zell, Valeria Lallai, Thomas Steinkellner, William S. Conrad, William Wisden, Kenneth D. Harris, Christie D. Fowler, and Thomas S. Hnasko
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Habenula ,Nicotine ,Tobacco Smoke and Health ,General Neuroscience ,Interpeduncular Nucleus ,Substance Abuse ,Neurosciences ,glutamate ,medial habenula ,General Medicine ,Fluorescence ,acetylcholine ,Brain Disorders ,Mice ,Tobacco ,Animals ,Disorders of the Nervous System ,Nicotinic Agonists ,corelease ,In Situ Hybridization ,Research Article: New Research ,In Situ Hybridization, Fluorescence - Abstract
Cholinergic projections from the medial habenula (MHb) to the interpeduncular nucleus (IPN) have been studied for their complex contributions to nicotine addiction and have been implicated in nicotine reinforcement, aversion, and withdrawal. While it has been established that MHb cholinergic projections corelease glutamate, no direct evidence has demonstrated a role for this glutamate projection in nicotine consumption. In the present study, a novel floxedSlc17a7[vesicular glutamate transporter 1 (VGLUT1)] mouse was generated and used to create conditional knock-out (cKO) mice that lack VGLUT1 in MHb cholinergic neurons. Loss ofSlc17a7expression in ventral MHb cholinergic neurons was validated using fluorescentin situhybridization, and immunohistochemistry was used to demonstrate a corresponding reduction of VGLUT1 protein in cholinergic terminals in the IPN. We also used optogenetics-assisted electrophysiology to evoke EPSCs in IPN and observed a reduction of glutamatergic currents in the cKO, supporting the functional disruption of VGLUT1 in MHb to IPN synapses. cKO mice exhibited no gross phenotypic abnormalities and displayed normal thigmotaxis and locomotor behavior in the open-field assay. When trained to lever press for food, there was no difference between control and cKO. However, when tested in a nicotine self-administration procedure, we found that the loss of VGLUT1-mediated glutamate corelease led to increased responding for nicotine. These findings indicate that glutamate corelease from ventral MHb cholinergic neurons opposes nicotine self-administration, and provide additional support for targeting this synapse to develop potential treatments for nicotine addiction.
- Published
- 2022
30. Closed Form Probabilistic Models of Time of Flight Sonar.
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Kenneth D. Harris
- Published
- 1998
31. Valuations for Spike Train Prediction.
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Vladimir Itskov, Carina Curto, and Kenneth D. Harris
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- 2008
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32. Data Sharing for Computational Neuroscience.
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Jeffrey L. Teeters, Kenneth D. Harris, K. Jarrod Millman, Bruno A. Olshausen, and Friedrich T. Sommer
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- 2008
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33. Neural model of a grid-based map for robot sonar.
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Kenneth D. Harris and Michael Recce
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- 1997
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34. Firing rate modulation: A simple statistical view of memory trace reactivation.
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Francesco P. Battaglia, Gary R. Sutherland, Stephen L. Cowen, Bruce L. McNaughton, and Kenneth D. Harris
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- 2005
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35. A transcriptomic axis predicts state modulation of cortical interneurons
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Charu Bai Reddy, Maxwell Shinn, Matteo Carandini, Dimitris Nicolout-sopoulos, Aiste Viduolyte, Hamish Forrest, Joshua Duffield, Kenneth D. Harris, Han Peng, Isabelle Prankerd, Stephane Bugeon, David Orme, Anne Ritoux, Mario Dipoppa, and Yoh Isogai
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Multidisciplinary ,Neural Inhibition ,Biology ,Inhibitory postsynaptic potential ,Axons ,Transcriptome ,Mice ,medicine.anatomical_structure ,Visual cortex ,Calcium imaging ,Interneurons ,medicine ,Excitatory postsynaptic potential ,Cholinergic ,Animals ,Calcium ,Receptors, Cholinergic ,Axon ,Receptor ,Arousal ,Neuroscience ,Visual Cortex - Abstract
Transcriptomics has revealed the exquisite diversity of cortical inhibitory neurons1–7, but it is not known whether these fine molecular subtypes have correspondingly diverse activity patterns in the living brain. Here, we show that inhibitory subtypes in primary visual cortex (V1) have diverse correlates with brain state, but that this diversity is organized by a single factor: position along their main axis of transcriptomic variation. We combined in vivo 2-photon calcium imaging of mouse V1 with a novel transcriptomic method to identify mRNAs for 72 selected genes in ex vivo slices. We used transcriptomic clusters (t-types)4 to classify inhibitory neurons imaged in layers 1-3 using a three-level hierarchy of 5 Families, 11 Classes, and 35 t-types. Visual responses differed significantly only across Families, but modulation by brain state differed at all three hierarchical levels. Nevertheless, this diversity could be predicted from the first transcriptomic principal component, which predicted a cell type’s brain state modulation and correlations with simultaneously recorded cells. Inhibitory t-types with narrower spikes, lower input resistance, weaker adaptation, and less axon in layer 1 as determined in vitro8 fired more in resting, oscillatory brain states. Transcriptomic types with the opposite properties fired more during arousal. The former cells had more inhibitory cholinergic receptors, and the latter more excitatory receptors. Thus, despite the diversity of V1 inhibitory neurons, a simple principle determines how their joint activity shapes state-dependent cortical processing.
- Published
- 2021
36. Functional lower extremity strength influences stepping strategy in community-dwelling older adults during single and dual-task walking
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Brandon M. Peoples, Kenneth D. Harrison, Keven G. Santamaria-Guzman, Silvia E. Campos-Vargas, Patrick G. Monaghan, and Jaimie A. Roper
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Mobility ,Lower extremity strength ,Gait ,Dual-task ,Stepping strategy ,Medicine ,Science - Abstract
Abstract As age increases, a decline in lower extremity strength leads to reduced mobility and increased fall risks. This decline outpaces the age-related reduction in muscle mass, resulting in mobility limitations. Older adults with varying degrees of mobility-disability use different stepping strategies. However, the link between functional lower extremity strength and stepping strategy is unknown. Therefore, understanding how age-related reductions in functional lower extremity strength influence stepping strategy is vital to unraveling mobility limitations. Twenty participants (17F, 72 ± 6 years) were recruited and tested at a local community event. Participants were outfitted with inertial measurement units (IMU) and walked across a pressurized walkway under single and dual motor task conditions (walking with and without carrying a tray with water) at their usual and fast speeds. Participants were dichotomized into normal (11) or low functional strength groups (9) based on age-specific normative cutoffs using the instrumented 5-repetition Sit-to-Stand test duration. Our study reveals that older adults with normal strength prefer adjusting their step time during walking tasks, while those with reduced strength do not exhibit a preferred stepping strategy. This study provides valuable insights into the influence of functional lower extremity strength on stepping strategy in community-dwelling older adults during simple and complex walking tasks. These findings could aid in diagnosing gait deviations and developing appropriate treatment or management plans for mobility disability in older adults.
- Published
- 2024
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37. Visuomotor learning promotes visually evoked activity in the medial prefrontal cortex
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Andrew J. Peters, Andrada-Maria Marica, Julie M.J. Fabre, Kenneth D. Harris, and Matteo Carandini
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Mice ,Cytoplasm ,Movement ,Animals ,Learning ,Prefrontal Cortex ,Calcium ,General Biochemistry, Genetics and Molecular Biology - Abstract
SUMMARYThe medial prefrontal cortex (mPFC) is necessary for executing many learned associations between stimuli and movement. It is unclear, however, whether activity in the mPFC reflects sensory or motor aspects of sensorimotor associations and whether it evolves gradually during learning. To address these questions, we recorded cortical activity with widefield calcium imaging while mice learned a visuomotor task. The task involved associating a visual stimulus with a forelimb movement. After learning, the mPFC showed stimulus-evoked activity both during task performance and during passive viewing, when the stimulus evoked no action. This stimulus-evoked activity closely tracked behavioral performance across training, exhibiting jumps between training days. Electrophysiological recordings localized this activity to the secondary motor and anterior cingulate cortex. We conclude that learning a visuomotor task promotes a route for visual information to reach the prefrontal cortex, which develops responses to the relevant visual stimuli even outside the context of the task.
- Published
- 2022
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38. Sensory coding and the causal impact of mouse cortex in a visual decision
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Matteo Carandini, Kenneth D. Harris, Nicholas A. Steinmetz, and Peter Zatka-Haas
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Male ,perceptual decisions ,0301 basic medicine ,Frontal cortex ,Mouse ,genetic structures ,QH301-705.5 ,Science ,Sensory system ,Optogenetics ,Stimulus (physiology) ,Biology ,Choice Behavior ,decision making ,General Biochemistry, Genetics and Molecular Biology ,Cell Line ,Animals, Genetically Modified ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Calcium imaging ,Cortex (anatomy) ,Sensory coding ,medicine ,Animals ,Humans ,Biology (General) ,optogenetics ,Visual Cortex ,Neurons ,General Immunology and Microbiology ,Mouse cortex ,General Neuroscience ,General Medicine ,cortex ,030104 developmental biology ,medicine.anatomical_structure ,Visual Perception ,Medicine ,Neuroscience ,030217 neurology & neurosurgery ,Research Article - Abstract
Correlates of sensory stimuli and motor actions are found in multiple cortical areas, but such correlates do not indicate whether these areas are causally relevant to task performance. We trained mice to discriminate visual contrast and report their decision by steering a wheel. Widefield calcium imaging and Neuropixels recordings in cortex revealed stimulus-related activity in visual (VIS) and frontal (MOs) areas, and widespread movement-related activity across the whole dorsal cortex. Optogenetic inactivation biased choices only when targeted at VIS and MOs,proportionally to each site's encoding of the visual stimulus, and at times corresponding to peak stimulus decoding. A neurometric model based on summing and subtracting activity in VIS and MOs successfully described behavioral performance and predicted the effect of optogenetic inactivation. Thus, sensory signals localized in visual and frontal cortex play a causal role in task performance, while widespread dorsal cortical signals correlating with movement reflect processes that do not play a causal role.
- Published
- 2021
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39. Behavioral origin of sound-evoked activity in mouse visual cortex
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Célian Bimbard, Timothy PH Sit, Anna Lebedeva, Charu B Reddy, Kenneth D Harris, and Matteo Carandini
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Sound (medical instrument) ,Neural activity ,Visual cortex ,medicine.anatomical_structure ,General Neuroscience ,medicine ,Sensory system ,Evoked activity ,Psychology ,Neuroscience - Abstract
Sensory cortices can be affected by stimuli of multiple modalities and are thus increasingly thought to be multisensory. For instance, primary visual cortex (V1) is influenced not only by images but also by sounds. Here we show that the activity evoked by sounds in V1, measured with Neuropixels probes, is stereotyped across neurons and even across mice. It is independent of projections from auditory cortex and resembles activity evoked in the hippocampal formation, which receives little direct auditory input. Its low-dimensional nature starkly contrasts the high-dimensional code that V1 uses to represent images. Furthermore, this sound-evoked activity can be precisely predicted by small body movements that are elicited by each sound and are stereotyped across trials and mice. Thus, neural activity that is apparently multisensory may simply arise from low-dimensional signals associated with internal state and behavior.
- Published
- 2021
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40. Publisher Correction: A transcriptomic axis predicts state modulation of cortical interneurons
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Stéphane Bugeon, Joshua Duffield, Mario Dipoppa, Anne Ritoux, Isabelle Prankerd, Dimitris Nicoloutsopoulos, David Orme, Maxwell Shinn, Han Peng, Hamish Forrest, Aiste Viduolyte, Charu Bai Reddy, Yoh Isogai, Matteo Carandini, and Kenneth D. Harris
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Multidisciplinary - Published
- 2022
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41. A genuine layer 4 in motor cortex with prototypical synaptic circuit connectivity
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Naoki Yamawaki, Katharine Borges, Benjamin A Suter, Kenneth D Harris, and Gordon M G Shepherd
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neocortex ,thalamocortical ,layer 4 ,pyramidal neuron ,microcircuit ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
The motor cortex (M1) is classically considered an agranular area, lacking a distinct layer 4 (L4). Here, we tested the idea that M1, despite lacking a cytoarchitecturally visible L4, nevertheless possesses its equivalent in the form of excitatory neurons with input–output circuits like those of the L4 neurons in sensory areas. Consistent with this idea, we found that neurons located in a thin laminar zone at the L3/5A border in the forelimb area of mouse M1 have multiple L4-like synaptic connections: excitatory input from thalamus, largely unidirectional excitatory outputs to L2/3 pyramidal neurons, and relatively weak long-range corticocortical inputs and outputs. M1-L4 neurons were electrophysiologically diverse but morphologically uniform, with pyramidal-type dendritic arbors and locally ramifying axons, including branches extending into L2/3. Our findings therefore identify pyramidal neurons in M1 with the expected prototypical circuit properties of excitatory L4 neurons, and question the traditional assumption that motor cortex lacks this layer.
- Published
- 2014
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42. Visuomotor association orthogonalizes visual cortical population codes
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Kenneth D. Harris, Failor Sw, and Matteo Carandini
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education.field_of_study ,Orientation (computer vision) ,Computer science ,Population ,Stimulus (physiology) ,Learning effect ,Visual cortex ,medicine.anatomical_structure ,Synaptic plasticity ,Learning theory ,medicine ,education ,Neuroscience ,Orthogonalization - Abstract
The brain should be best able to associate distinct behavioral responses to sensory stimuli if these stimuli evoke population firing patterns that are close to orthogonal. To investigate whether task training orthogonalizes population codes in primary visual cortex (V1), we measured the orientation tuning of 4,000-neuron populations in mouse V1 before and after training on a visuomotor task. The effect of task training on population codes could be captured by a simple mathematical transformation of firing rates, which suppressed responses to motor-associated stimuli, but only in cells responding to them at intermediate levels. This transformation orthogonalized the representations of the task orientations by sparsening the population responses to these stimuli. The strength of response transformation varied from trial to trial, suggesting a dynamic circuit mechanism rather than static synaptic plasticity. These results indicate a simple process by which visuomotor associations orthogonalize population codes as early as in primary visual cortex.
- Published
- 2021
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43. Frontal cortex learns to add evidence across modalities
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Miles J. Wells, Kenneth D. Harris, Matteo Carandini, Sit Tp, and Philip Coen
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Frontal cortex ,Computer science ,media_common.quotation_subject ,Multisensory integration ,Sensory system ,Stimulus (physiology) ,Optogenetics ,Stimulus modality ,Visual cortex ,medicine.anatomical_structure ,Perception ,medicine ,Neuroscience ,media_common - Abstract
To interpret the world and make accurate perceptual decisions, the brain must combine information across sensory modalities, For instance, it must combine vision and hearing to localize objects based on their image and sound. Probability theory suggests that evidence from multiple independent cues should be combined additively 1, but it is unclear whether mice and other mammals do this 2–6, and the cortical substrates of multisensory integration are uncertain 7. Here we show that to localize a stimulus mice combine auditory and visual spatial cues additively, a computation supported by unisensory processing in auditory and visual cortex and additive multisensory integration in frontal cortex. We developed an audiovisual localization task where mice turn a wheel to indicate the joint position of an image and a sound. Scanning optogenetic inactivation of dorsal cortex 8–11 showed that auditory and visual areas contribute unisensory information, whereas frontal cortex (secondary motor area, MOs) contributes multisensory information to the mouse’s decision, Neuropixels recordings of >10,000 neurons indicated that neural activity in MOs reflects an additive combination of visual and auditory signals. An accumulator model 1,12,13 applied to the sensory representations of MOs neurons reproduced behaviourally observed choices and reaction times. This suggests that MOs integrates information from multiple sensory cortices, providing a signal that is then transformed into a binary decision by a downstream accumulator.
- Published
- 2021
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44. Neuropixels 2.0: A miniaturized high-density probe for stable, long-term brain recordings
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John O'Callaghan, Maxime Beau, Fabian Kloosterman, Abraham Z. Vollan, Anna Lebedeva, Michael Häusser, Susu Chen, Joshua T. Dudman, John O'Keefe, Cagatay Aydin, Timothy D. Harris, Albert K. Lee, Nicholas A. Steinmetz, Jan Putzeys, Kenneth D. Harris, Rik van Daal, Carolina Mora-Lopez, Matteo Carandini, Zhiwen Ye, Marius Pachitariu, Karel Svoboda, Marius Bauza, Jennifer Colonell, Dimitar Kostadinov, Claudia Böhm, Martijn Broux, Edvard I. Moser, Michael S. Okun, B. Dutta, Alfonso Renart, Adam W. Hantman, Richard J. Gardner, Shiwei Wang, Sebastian Haesler, Bill Karsh, Britton Sauerbrei, Jai Bhagat, Junchol Park, and Marleen Welkenhuysen
- Subjects
Male ,Neurons ,Miniaturization ,Multidisciplinary ,Post hoc ,Computer science ,Extramural ,Action Potentials ,Brain ,High density ,Article ,Electrodes, Implanted ,Rats ,Term (time) ,Electrophysiology ,Mice, Inbred C57BL ,Mice ,Neural processing ,Animals ,Microelectrodes ,Algorithms ,Biomedical engineering - Abstract
Recording many neurons for a long time The ultimate aim of chronic recordings is to sample from the same neuron over days and weeks. However, this goal has been difficult to achieve for large populations of neurons. Steinmetz et al. describe the development and testing of Neuropixels 2.0. This new electrophysiological recording tool is a miniaturized, high-density probe for both acute and long-term experiments combined with sophisticated software algorithms for fully automatic post hoc computational stabilization. The technique also provides a strategy for extending the number of recorded sites beyond the number of available recording channels. In freely moving animals, extremely large numbers of individual neurons could thus be followed and tracked with the same probe for weeks and occasionally months. Science , this issue p. eabf4588
- Published
- 2021
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45. The Role of Al
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Véronique, Balland, Mickaël, Mateos, Arvinder, Singh, Kenneth D, Harris, Christel, Laberty-Robert, and Benoît, Limoges
- Abstract
Rechargeable aqueous aluminium batteries are the subject of growing interest, however, the charge storage mechanisms at manganese oxide-based cathodes remain poorly understood. In essense, every study proposes a different mechanism. Here, an in situ spectroelectrochemical methodology is used to unambiguously demonstrate that reversible proton-coupled MnO
- Published
- 2021
46. Experimental modelling of time-of-flight sonar.
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Kenneth D. Harris and Michael Recce
- Published
- 1998
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47. Absolute localization for a mobile robot using place cells.
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Kenneth D. Harris and Michael Recce
- Published
- 1997
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48. High-dimensional cluster analysis with the Masked EM Algorithm.
- Author
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Shabnam N. Kadir, Dan F. M. Goodman, and Kenneth D. Harris
- Published
- 2013
49. The Convallis Rule for Unsupervised Learning in Cortical Networks.
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Pierre Yger and Kenneth D. Harris
- Published
- 2013
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50. Neural correlates of blood flow measured by ultrasound
- Author
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Alan Urban, Charu Bai Reddy, Matteo Carandini, Kenneth D. Harris, Gabriel Montaldo, Anwar O. Nunez-Elizalde, and Michael Krumin
- Subjects
Cerebral Cortex ,Neurons ,Physics ,Basis (linear algebra) ,Haemodynamic response ,business.industry ,General Neuroscience ,Ultrasound ,Hemodynamics ,Filter (signal processing) ,Stimulus (physiology) ,Mice ,Neural activity ,nervous system ,Animals ,Neurovascular Coupling ,business ,Neuroscience ,Brain function ,Linear filter ,Ultrasonography - Abstract
Functional ultrasound imaging (fUSI) is an appealing method for measuring blood flow and thus infer brain activity, but it relies on the physiology of neurovascular coupling and requires extensive signal processing. To establish to what degree fUSI trial-by-trial signals reflect neural activity, we performed simultaneous fUSI and neural recordings with Neuropixels probes in awake mice. fUSI signals strongly correlated with the slow (
- Published
- 2021
- Full Text
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