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We investigated the influence of high-CO2 hydrothermal seepage on element cycling, early diagenetic processes, and meiobenthic communities in sediments of a coral reef in Papua New Guinea. Based on fluid flow velocities, determined from temperature gradients, and element concentrations, the solute fluxes from the seeps were estimated, showing that seepage through sediments can be a source of nutrients but also of potentially toxic elements to the reef ecosystem. The sediment pore waters consisted of up to 36% hydrothermal fluids, enriched in As, Si, Li, Mn, Fe, Rb, and Cs relative to ambient seawater. During their ascent to the seabed, the acidic fluids reacted with the sediments, leading to increases in total alkalinity, nutrients, and alkali elements in the fluids. Mixing of hydrothermal fluids with seawater within the sediments lead to precipitation of redox-reactive species, including Fe-oxides, but the sediment pore waters were still a source of trace metals to the water column. Presence of the low-pH fluids in the sediments resulted in dissolution of sedimentary carbonates and left behind finer-grained volcanoclastic sands containing As, Cr, and Ni in concentrations toxic to biota. These finer-grained sediments had a reduced permeability, reducing the rate of remineralization of organic matter. Benthic meiofauna and nematode abundance and functional diversity were relatively lower at sites with hydrothermal seepage through the sediment. As benthic and pelagic processes are tightly coupled, it is likely that the changes in benthic biogeochemical processes due to sediment acidification will also affect epibenthic and pelagic communities.

High‐throughput sequencing has the potential to describe biological communities with high efficiency yet comprehensive assessment of diversity with species‐level resolution remains one of the most challenging aspects of metabarcoding studies. We investigated the utility of curated ribosomal and mitochondrial nematode reference sequence databases for determining phylum‐specific species‐level clustering thresholds. We compiled 438 ribosomal and 290 mitochondrial sequences which identified 99% and 94% as the species delineation clustering threshold, respectively. These thresholds were evaluated in HTS data from mock communities containing 39 nematode species as well as environmental samples from Vietnam. We compared the taxonomic description of the mocks generated by two read‐merging and two clustering algorithms and the cluster‐free Dada2 pipeline. Taxonomic assignment with the RDP classifier was assessed under different training sets. Our results showed that 36/39 mock nematode species were identified across the molecular markers (18S: 32, JB2: 19, JB3: 21) in UClust_ref OTUs at their respective clustering thresholds, outperforming UParse_denovo and the commonly used 97% similarity. Dada2 generated the most realistic number of ASVs (18S: 83, JB2: 75, JB3: 82), collectively identifying 30/39 mock species. The ribosomal marker outperformed the mitochondrial markers in terms of species and genus‐level detections for both OTUs and ASVs. The number of taxonomic assignments of OTUs/ASVs was highest when the smallest reference database containing only nematode sequences was used and when sequences were truncated to the respective amplicon length. Overall, OTUs generated more species‐level detections, which were, however, associated with higher error rates compared to ASVs. Genus‐level assignments using ASVs exhibited higher accuracy and lower error rates compared to species‐level assignments, suggesting that this is the most reliable pipeline for rapid assessment of alpha diversity from environmental samples.

15 pages, 12 figures, supplementary data https://doi.org/10.1016/j.dsr.2020.103433, Kelp forests produce large amounts of macroalgal detritus, ranging from whole plants to small particles (1 mm). The role of this kelp detritus in fueling deep-sea communities adjacent to healthy kelp forests was investigated in a region in the north of Norway by comparing the community structure and biodiversity of meio-, macro-, and megafauna in two deep (450 m) areas with different expected input of kelp detritus: a deep fjord basin surrounded by kelp forests and the adjacent continental shelf 15 km offshore from the kelp forests. The results showed that, although the fjord received a significantly higher amount of large kelp detritus (i.e. blades) than the shelf area, the amount of small kelp detritus available on the sediment was similar in both areas. There were significant differences in the multidimensional scaling analyses on the community structure for meio-, macro-, and megafauna between the fjord and the shelf. Significant differences were also found in biomass, abundance and biodiversity indices for some groups. However, no clear pattern emerged in the community structure and biodiversity between the fjord and the shelf, and the observed differences could not be linked directly to kelp detritus availability. The similar amounts of small particles of kelp detritus in the fjord and shelf area suggest that kelp detritus can provide organic matter to ecosystems further away than initially hypothesized, thus potentially shaping the structure and functioning of deep benthic communities distant from the kelp forests. Yet, the direct (trophic) links of kelp detritus and the studied benthic fauna need to be further analysed. The results are discussed in relation to current global changes in kelp forest, including regime shifts from healthy kelp reefs to turfs or barren areas, which reduce drastically the amount of macroalgal detritus produced and exported, This study was funded by the Norwegian Research Council through the KELPEX project (NRC Grant no. 255085/E40). With the funding support of the ‘Severo Ochoa Centre of Excellence’ accreditation (CEX2019-000928-S), of the Spanish Research Agency (AEI)

Sites with naturally high CO

Free-living nematodes were investigated in the Mar Piccolo of Taranto (Ionian Sea), a semi-enclosed basin of strategic importance for its complex productive infrastructure but in need of remediation due to the alarming amounts of heavy metals and synthetic organic contaminants in the sediments. Abundance, genera composition, biodiversity and trophic traits of nematodes were related to the gradual transition from marine to more brackish conditions and to the varying levels of contaminants in different sub-areas of the basin. Nematodes were more abundant and diverse at the most marine site while low numbers and diversity characterized the most contaminated station. Going towards the innermost part of the basin, gradually increasing values of abundance and biodiversity were observed although the assemblage was susceptible to the organic enrichment caused by mussel farms. The use of nematodes as ecological indicators mirrored the response of the assemblage to the main patterns acting in the basin (High/Good scores at the most marine site and Poor/Bad scores at the most contaminated station), giving a clear indication of environmental quality to stakeholders/authority that can contribute to address remediation actions in contaminated sediments.

In future global change scenarios the surface ocean will experience continuous acidification and rising temperatures. While effects of both stressors on marine, benthic communities are fairly well studied, consequences of the interaction of both factors remain largely unknown. We performed a short-term microcosm experiment exposing a soft-bottom community from an intertidal flat in the Westerscheldt estuary to two levels of seawater pH (ambient pHT = 7.9, reduced pHT = 7.5) and temperature (10 °C ambient and 13 °C elevated temperature) in a crossed design. After 8 weeks, meiobenthic community structure and nematode staining ratios, as a proxy for mortality, were compared between treatments and structural changes were related to the prevailing abiotic conditions in the respective treatments (pore water pHT, sediment grain size, total organic matter content, total organic carbon and nitrogen content, phytopigment concentrations and carbonate concentration). Pore water pHT profiles were significantly altered by pH and temperature manipulations and the combination of elevated temperature and reduced pH intensified the already more acidic porewater below the oxic zone. Meiofauna community composition was significantly affected by the combination of reduced pH and elevated temperature resulting in increased densities of predatory Platyhelminthes, reduced densities of Copepoda and Nauplii and complete absence of Gastrotricha compared to the experimental control. Furthermore, nematode staining ratio was elevated when seawater pH was reduced pointing towards reduced degradation rates of dead nematode bodies. The observed synergistic interactions of pH and temperature on meiobenthic communities and abiotic sediment characteristics underline the importance of multistressor experiments when addressing impacts of global change on the marine environment.

Zooplankton play a prominent role in the biogeochemical cycles of marine ecosystems. Little is known about the trophodynamics of zooplankton in response to geographic patterns in isotopic baselines and physical processes in the western tropical North Pacific. In this study, stable isotope ratios of five size fractions of zooplankton (100 to > 2000 mu m) from different current regions in the western tropical North Pacific Ocean were analyzed. Both delta C-13 and delta N-15 isotopic values increased with zooplankton size class. The largest zooplankton group (> 2000 mu m), with a diverse composition, showed relatively higher stable isotope signatures, covering a wider range. Regional variations in the zooplankton stable isotope signatures were similar across all size classes, with generally higher values in the North Equatorial Counter Current (NECC) and the North Equatorial Current (NEC) and lower values in the Subtropical Counter Current (STCC). These regional patterns of zooplankton isotope signatures were consistent with the variation of oceanographic features (temperature, salinity, nutrients, chlorophyll a) and were also related to the isotopic baselines of particulate organic matter (POM) in the different current regions. Moreover, the nitrogen-fixing cyanobacteria Trichodesmium spp. may be the main contributor to low delta N-15 values in the STCC. The results of this study demonstrate the influence of physical processes on the stable isotopic signatures of zooplankton. This baseline information is crucial for future food web studies in the western tropical North Pacific Ocean.

One of the options to mitigate atmospheric CO2 increase is CO2 Capture and Storage in sub-seabed geological formations. Since predicting long-term storage security is difficult, different CO2 leakage scenarios and impacts on marine ecosystems require evaluation. Submarine CO2 vents may serve as natural analogues and allow studying the effects of CO2 leakage in a holistic approach. At the study site east of Basiluzzo Islet off Panarea Island (Italy), gas emissions (90-99% CO2) occur at moderate flows (80-120 Lm(-2) h(-1)). We investigated the effects of acidified porewater conditions (pH(T) range: 5.5-7.7) on the diversity of benthic bacteria and invertebrates by sampling natural sediments in three subsequent years and by performing a transplantation experiment with a duration of one year, respectively. Both multiple years and one year of exposure to acidified porewater conditions reduced the number of benthic bacterial operational taxonomic units and invertebrate species diversity by 30-80%. Reduced biodiversity at the vent sites increased the temporal variability in bacterial and nematode community biomass, abundance and composition. While the release from CO2 exposure resulted in a full recovery of nematode species diversity within one year, bacterial diversity remained affected. Overall our findings showed that seawater acidification, induced by seafloor CO2 emissions, was responsible for loss of diversity across different size-classes of benthic organisms, which reduced community stability with potential relapses on ecosystem resilience.

Increasing industrial metal demands due to rapid technological developments may drive the prospection and exploitation of deep-sea mineral resources such as polymetallic nodules. To date, the potential environmental consequences of mining operations in the remote deep sea are poorly known. Experimental studies are scarce, especially with regard to the effect of sediment and nodule debris depositions as a consequence of seabed mining. To elucidate the potential effects of the deposition of crushed polymetallic nodule particles on abyssal meiobenthos communities, a short (11 d) in situ experiment at the seafloor of the Peru Basin in the south-east Pacific Ocean was conducted in 2015. We covered abyssal, soft sediment with approx. 2 cm of crushed nodule particles and sampled the sediment after 11 d of incubation at 4200 m water depth. Short-term ecological effects on the meiobenthos community were studied including changes in their composition and vertical distribution in the sediment as well as nematode genus composition. Additionally, copper burden in a few similar-sized but randomly selected nematodes was measured by means of micro X-ray fluorescence (µXRF). At the end of the experiment, 46±1 % of the total meiobenthos occurred in the added crushed nodule layer, while abundances decreased in the underlying 2 cm compared to the same depth interval in undisturbed sediments. Densities and community composition in the deeper 2–5 cm layers remained similar in covered and uncovered sediments. The migratory response into the added nodule material was particularly seen in polychaetes (73±14 %, relative abundance across all depth layers) copepods (71±6 %), nauplii (61±9 %) and nematodes (43±1 %). While the dominant nematode genera in the added nodule material did not differ from those in underlying layers or the undisturbed sediments, feeding type proportions in this layer were altered, with a 9 % decrease of non-selective deposit feeders and an 8 % increase in epistrate feeders. Nematode tissue copper burden did not show elevated copper toxicity resulting from burial with crushed nodule particles. Our results indicate that burial with a 2 cm layer of crushed nodule particles induces changes in the vertical structure of meiobenthos inside the sediment and an alteration of nematode feeding type proportions within a short time frame of 11 d, while nematode tissue copper burden remains unchanged. These findings considerably contribute to the understanding of the short-term responses of meiobenthos to physical disturbances in the deep sea.

Using fatty acid biomarkers and stable isotopic signatures, we investigated the feeding strategies and dietary preferences of four dominant copepod species (Calanoides acutus, Calanus propinquus, Metridia gerlachei and Rhincalanus gigas) sampled during the late austral summer in Prydz Bay, Antarctica. Our results show that diatoms, dinoflagellates and ciliates dominated copepod food sources (hypothesized to be phytoplankton and particulate organic matter) in the inner bay regions more than in the oceanic regions of Prydz Bay. Regional differences in the composition and abundance of food sources were also reflected in the fatty acid biomarkers and stable isotopic values. In the inner bay region, the total fatty acid contents of these food sources were nearly twofold higher, including greater contributions from fatty acids of dinoflagellate origin; these samples also had higher d13C and d15N values. Fatty acid biomarkers and stable isotopic values in copepod species roughly mirrored the spatial patterns in food sources. As found in the primary producers, the concentrations of dinoflagellate fatty acids and d13C and d15N values were higher in copepods from the inner bay regions. Additionally, there were inter-species differences in the fatty acids and stable isotopic values of copepods. C. acutus and C. propinquus did not exhibit significant regional differences in their total fatty acid contents. In contrast, M. gerlachei from the inner bay region had higher fatty acid values. C. acutus and C. propinquus had higher compositions of the long chain fatty acids 20:1n-9, 22:1n-9 and 22:1n-1, while docosahexaenoic acid (DHA) was higher in M. gerlachei. The d15N values indicate that C. acutus occupies a higher trophic level than the other copepod species. Similarly, higher fatty acid ratios in M. gerlachei, including DHA/EPA(eicosapntemacnioc acid) and 18:1n-9/18:1n-7, indicate that this species feeds more opportunistically and prefers a carnivorous diet. Insights from this combined fatty acid and stable isotopic approach suggest that the dominant copepod species in Prydz Bay, Antarctica, have flexible feeding strategies that vary by food source during the late austral summer.

One of the options to mitigate atmospheric CO

Este artículo contiene 16 páginas, 5 figuras, 3 tablas., Subseabed CO2 storage is considered a future climate change mitigation technology. We investigated the ecological consequences of CO2 leakage for a marine benthic ecosystem. For the first time with a multidisciplinary integrated study, we tested hypotheses derived from a meta-analysis of previous experimental and in situ high-CO2 impact studies. For this, we compared ecological functions of naturally CO2-vented seafloor off the Mediterranean island Panarea (Tyrrhenian Sea, Italy) to those of nonvented sands, with a focus on biogeochemical processes and microbial and faunal community composition. High CO2 fluxes (up to 4 to 7 mol CO2 m−2 hour−1) dissolved all sedimentary carbonate, and comigration of silicate and iron led to local increases of microphytobenthos productivity (+450%) and standing stocks (+300%). Despite the higher food availability, faunal biomass (−80%) and trophic diversity were substantially lower compared to those at the reference site. Bacterial communities were also structurally and functionally affected, most notably in the composition of heterotrophs and microbial sulfate reduction rates (−90%). The observed ecological effects of CO2 leakage on submarine sands were reproduced with medium-term transplant experiments. This study assesses indicators of environmental impact by CO2 leakage and finds that community compositions and important ecological functions are permanently altered under high CO2., This work was funded by the European Union Seventh Framework Programme (FP7/2007-2013) under grant agreement number 265847 [Sub-seabed CO2 storage: Impact on Marine Ecosystems (ECO2)] and supported by the Max Planck Society and by the Flemish Fund for Scientific Research (grant number 1242114N). This study is also a contribution of D.M. to the research project MarSymBiomics (reference number CTM2013-43287-P), funded by the Spanish “Agencia Estatal de Investigación” (AEI), and PopCOmics (CTM2017-88080), funded by the AEI and the European Funds for Regional Development (FEDER) and to the Consolidated Research Group on Marine Benthic Ecology (2014SGR120) of the Generalitat de Catalunya.

Particulate organic carbon (POC) export fluxes generally reflect patterns of primary production in the upper ocean, sinking to the seabed and acting as a food source for benthic organisms. Data on meiobenthic communities from two SYSTem COupling cruises (SYSTCO) in the deep Southern Ocean (RV Polarstern ANT-XXIV/2, north–south transect along the prime meridian, and ANT-XXVIII/3, east–west transect along the Polar Front) were combined with surface and benthic environmental parameters, as well as POC flux estimates based on satellite measurements. It was tested to what extent meiofaunal communities were determined by prevailing conditions of an east–west increase in net primary productivity (NPP) and bottom Chlorophyll a (Chla) concentration, and a westwards, divergently decreasing estimated POC flux. Nematodes dominated the meiofauna (84.4–92.4%) and occurred with a westward increase in relative abundance and density for the ANT-XXVIII/3 stations, associated with a parallel increase in NPP and Chla. Nematode biomass was negatively correlated to the estimated POC flux. Along the north–south transect no significant correlation was found but higher estimated POC fluxes at stations south of the Polar Front were associated with higher meiofauna diversity and density at higher taxon level, while stations located at the Polar Front, which were associated with lower POC fluxes, contained communities with lower diversity and density.

CO2 leakage alters benthic carbon cycling and leads to shifts in the food web and ecological functioning of local communities., Subseabed CO2 storage is considered a future climate change mitigation technology. We investigated the ecological consequences of CO2 leakage for a marine benthic ecosystem. For the first time with a multidisciplinary integrated study, we tested hypotheses derived from a meta-analysis of previous experimental and in situ high-CO2 impact studies. For this, we compared ecological functions of naturally CO2-vented seafloor off the Mediterranean island Panarea (Tyrrhenian Sea, Italy) to those of nonvented sands, with a focus on biogeochemical processes and microbial and faunal community composition. High CO2 fluxes (up to 4 to 7 mol CO2 m−2 hour−1) dissolved all sedimentary carbonate, and comigration of silicate and iron led to local increases of microphytobenthos productivity (+450%) and standing stocks (+300%). Despite the higher food availability, faunal biomass (−80%) and trophic diversity were substantially lower compared to those at the reference site. Bacterial communities were also structurally and functionally affected, most notably in the composition of heterotrophs and microbial sulfate reduction rates (−90%). The observed ecological effects of CO2 leakage on submarine sands were reproduced with medium-term transplant experiments. This study assesses indicators of environmental impact by CO2 leakage and finds that community compositions and important ecological functions are permanently altered under high CO2.

To study the response of the smaller benthic biota to larger food-falls and their possible effects on the biodiversity at the deep seafloor, we deployed the halves of a sagittally bisected porpoise (1.3 m in length; each half approximately 18 kg) at 2500 m and 5400 m water depth at the LTER (Long-Term Ecological Research) observatory HAUSGARTEN in the eastern Fram Strait. Five weeks after the porpoise deployment, sediments beneath the carcasses and at different distances (0, 20, 40 cm) from these artificial food-falls were sampled with push-corers handled by a Remotely Operated Vehicle. The samples provided empirical evidence for a quick response by sediment-inhabiting bacteria and metazoan meiofauna to the carcasses at both water depths. Compared to control sediments, the substantial pulse of organic matter also led to generally increased meiofauna/nematode densities around the artificial food-falls. The comparison of nematode communities in sediments affected by the carcasses with those in control sediments exhibited shifts in the structural composition and the associated trophic and functional diversity of the nematodes. Our results confirmed that the impact of large food-falls on the deep benthic community largely depend on environmental factors (water depth, alternative food sources) as well as the background species composition, i.e., the structure of the prevailing meiofauna/nematode assemblages and the composition of the necrophagous community present in the wider area.

The extraction of minerals from land-based mines necessitates the disposal of large amounts of mine tailings. Dumping and storage of tailings into the marine environment, such as fjords, is currently being performed without knowing the potential ecological consequences. This study investigated the effect of short-term exposure to different deposition depths of inert iron ore tailings (0.1, 0.5, and 3 cm) and dead subsurface sediment (0.5 and 3 cm) on a deep water (200 m) fjord benthic assemblage in a microcosm experiment. Biotic and abiotic variables were measured to determine structural and functional changes of the benthic community following an 11 and 16 day exposure with tailings and dead sediment, respectively. Structural changes of macrofauna, meiofauna, and bacteria were measured in terms of biomass, density, community composition and mortality while measures of oxygen penetration depth, sediment community oxygen consumption and 13C-uptake and processing by biota revealed changes in the functioning of the system. Burial with mine tailings and natural sediments modified the structure and functioning of the benthic community albeit in a different way. Mine tailings deposition of 0.1 cm and more resulted in a reduced capacity of the benthic community to remineralize fresh 13C-labeled algal material, as evidenced by the reduced sediment community oxygen consumption and uptake rates in all biological compartments. At 3 cm of tailings deposition, it was evident that nematode mortality was higher inside the tailings layer, likely caused by reduced food availability. In contrast, dead sediment addition led to an increase in oxygen consumption and bacterial carbon uptake comparable to control conditions, thereby leaving deeper sediment layers anoxic and in turn causing nematode mortality at 3 cm deposition. This study clearly shows that even small levels (0.1 cm) of instantaneous burial by mine tailings may significantly reduce benthic ecosystem functioning on the short term. Furthermore, it reveals the importance of substrate characteristics and origin when studying the effects of substrate addition on marine benthic fauna. Our findings should alert decision makers when considering approval of new deep-sea tailings placement sites as this technique will have major negative impacts on benthic ecosystem functioning over large areas.

From July 2010 to July 2012, free-living nematodes were investigated in terms of abundance, genera and trophic composition at the long term St. C1 (depth 18 m), located in the Gulf of Trieste (northern Adriatic Sea). The integration of these results with environmental (e.g. sediment grain-size, Biopolymeric C and Chl a) and biological variables (benthic diatom biomass and composition) collected synoptically with nematodes, allowed to clarify the linkage between these organisms and another ecosystem component, i.e. benthic diatoms. The observed peaks of nematode abundance in summer samplings were ascribable almost exclusively to piercing nematodes that feed on microalgae (Chromadoridae and, among them, Ptycholaimellus) and were concomitant with the highest numbers of benthic diatoms. DISTLM outputs further corroborated this interaction by indicating Chl a, i.e. a proxy of benthic diatoms, as the only environmental variable that significantly shaped nematode assemblage over the 2-year period. This linkage was not explained only quantitatively (i.e. more diatoms supported more nematodes) but also qualitatively. During winter, in fact, the presence of heavily silicified diatoms co-occurred with nematode minima and the lowest percentage of piercing organisms, suggesting an overall minor ability of the assemblage in using this feeding strategy. In a benthic ecosystem functioning point of view, the observed seasonal pattern of variation in both nematodes and benthic diatoms suggests that more of the energy flowing to nematodes during the summer derives directly from benthic diatom primary production while in the winter this linkage is less important.

The deep sea is the largest biome of the biosphere. The knowledge of the spatial variability of deep-sea biodiversity is one of the main challenges of marine ecology and evolutionary biology. The choice of the observational spatial scale is assumed to play a key role for understanding processes structuring the deep-sea benthic communities and one of the most typical features of marine biodiversity distribution is the existence of bathymetric gradients. However, the analysis of biodiversity bathymetric gradients and the associated changes in species composition (beta diversity) typically compared large depth ranges (with intervals of 500 to 1000 or even 2000 m depth among sites). To test whether significant changes in alpha and beta diversity occur also at fine-scale bathymetric gradients (i.e., within few hundred-meter depth intervals) the variability of deep-sea nematode biodiversity and assemblage composition along a bathymetric transect (200–1200 m depth) with intervals of 200 m among sampling depths, was investigated. A hierarchical sampling strategy for the analysis of nematode species richness, beta diversity, functional (trophic) diversity, and related environmental variables, was used. The results indicate the lack of significant differences in taxonomic and functional diversity across sampling depths, but the presence of high beta diversity at all spatial scales investigated: between cores collected from the same box corer (on average 56%), among deployments at the same depth (58%), and between all sampling depths (62%). Such high beta diversity is influenced by the presence of small-scale patchiness in the deep sea and is also related to the large number of rare or very rare species (typically accounting for >80% of total species richness). Moreover, the number of ubiquitous nematode species across all sampling depths is quite low (ca. 15%). Multiple regression analyses provide evidence that such patterns could be related to the different availability, composition and size spectra of food particles in the sediments. Additionally, though to a lesser extent, our results indicate, that selective predation can influence the nematode trophic composition. These findings suggest that a multiple scale analysis based on a nested sampling design could significantly improve our knowledge of bathymetric patterns of deep-sea biodiversity and its drivers.

Hydrate Ridge (HR), located on the northeastern Pacific margin off Oregon, is characterized by the presence of outcropping hydrates and active methane seepage. Additionally, permanent low oxygen conditions overlay the benthic realm. This study evaluated the relative influence of both seepage and oxygen minima as sources of habitat heterogeneity and potential stress-inducing features on the bathyal metazoan benthos (primarily nematodes) at three different seep and non-seep HR locations, exposed to decreasing bottom-water oxygen concentrations with increasing water depth. The nematode seep communities at HR exhibited low diversity with dominance of only one or two genera (Daptonema and Metadesmolaimus), elevated average individual biomass and δ13C evidence for strong dependance on chemosynthesis-derived carbon, resembling deep-sea seeps worldwide. Although the HR seep habitats harbored a distinct nematode community like in other known seep communities, they differed from deep-sea seeps in well-oxygenated waters based on that they shared the dominant genera with the surrounding non-seep sediments overlain by oxygen-deficient bottom water. The homogenizing effect of the oxygen minimum zone on the seep nematode assemblages and surrounding sediments was constant with increasing water depth and concomitant greater oxygen-deficiency, resulting in a loss of habitat heterogeneity.

Knowledge on quantitative faunal distribution patterns of hydrothermal communities in slow-spreading vent fields is particularly scarce, despite the importance of these ridges in the global mid-ocean system. This study assessed the composition, abundance and diversity of 12 benthic faunal assemblages from various locations on the Eiffel Tower edifice (Lucky Strike vent field, Mid-Atlantic Ridge) and investigated the role of key environmental conditions (temperature, total dissolved iron (TdFe), sulfide (TdS), copper (TdCu) and pH) on the distribution of macro- and meiofaunal species at small spatial scales (-1), high pH (up to 7.34±0.13) but low TdS concentrations (-1); (2) warm microhabitats characterized by warmer temperatures (>6°C), low pH (12.8 µmol l-1/>1.1 µmol l-1 respectively); and (3) the third microhabitat characterized by intermediate abiotic conditions. Environmental conditions showed more variation in the warm microhabitats than in the cold microhabitats. In terms of fauna, the warm microhabitats had lower macro- and meiofaunal densities, and lower richness and Shannon diversity than the cold microhabitats. Six macrofaunal species (Branchipolynoe seepensis, Amathys lutzi, Bathymodiolus azoricus, Lepetodrilus fucensis, Protolira valvatoides and Chorocaris chacei) and three meiofaunal taxa (Paracanthonchus, Cephalochaetosoma and Microlaimus) were identified as being significant indicator species/taxa of particular microhabitats. Our results also highlight very specific niche separation for copepod juveniles among the different hydrothermal microhabitats. Some sampling units showed unique faunal composition and increased beta diversity on the Eiffel Tower edifice. Contrary to what was expected, the highest beta diversity was not associated with a particular microhabitat type, but rather with location on the central part of the edifice where other structuring factors may predominate.

During the RV Polarstern ANT XXIV-2 cruise to the Southern Ocean and the Weddell Sea in 2007/2008, sediment samples were taken during and after a phytoplankton bloom at 52°S 0°E. The station, located at 2960 m water depth, was sampled for the first time at the beginning of December 2007 and revisited at the end of January 2008. Fresh phytodetritus originating from the phytoplankton bloom first observed in the water column had reached the sea floor by the time of the second visit. Absolute abundances of bacteria and most major meiofauna taxa did not change between the two sampling dates. In the copepods, the second most abundant meiofauna taxon after the nematodes, the enhanced input of organic material did not lead to an observable increase of reproductive effort. However, significantly higher relative abundances of meiofauna could be observed at the sediment surface after the remains of the phytoplankton bloom reached the sea floor. Vertical shifts in meiofauna distribution between December and January may be related to changing pore-water oxygen concentration, total sediment fatty acid content, and pigment profiles measured during our study. Higher oxygen consumption after the phytoplankton bloom may have resulted from an enhanced respiratory activity of the living benthic component, as neither meiofauna nor bacteria reacted with an increase in individual numbers to the food input from the water column. Based on our results, we infer that low temperatures and ecological strategies are the underlying factors for the delayed response of benthic deep-sea copepods, in terms of egg and larval production, to the modified environmental situation.

An underwater camcorder mounted on a lander frame was used to image the sedimentary conditions and the epibenthic fauna at the seafloor along the SYSTCO transect. Four stations were monitored; on the lower shelf (600 m), continental slope (2000 m), abyssal plain (5300 m), and on top of a seamount (2100 m). The sediment surface was filmed for different time lengths between 3 and 19 min, while the camera was towed over distances ranging from 11 to 187 m, resulting in areas filmed between 4 and 71 m 2 per station. From the gathered images, epifauna was counted and identified to the lowest possible taxonomic level. For ground truthing, two to three replicate multicorer samples per station were vertically sectioned per centimeter down to 5 cm depth and analyzed for sediment granulometry. Differences in the sedimentary characteristics could be related to both water depth and topography according to the multicorer samples. The video footage from each station showed a range of different sediment surface types and widely varying epifaunal abundance, the lowest number of readily identifiable organisms being present on the abyssal plain and the highest on the lower shelf.

A stable isotope (13C)-labeling experiment was performed to quantify the importance of bacterial carbon as a food source for an Arctic deep-sea nematode community. Bacterial functional groups were isotopically enriched with 13C-glucose, 13C-acetate, 13C-bicarbonate, and 13C-amino acids injected into sediments collected from 1280 m depth at 79°N, 6°E, west of Svalbard. Incorporation of the 13C label into bacterial phospholipid-derived fatty acids (PLFAs) and nematodes in the top 5 cm of the sediment was monitored over a 7-d period. The 13C dynamics of nematodes was fitted with a simple isotope turnover model to derive the importance of the different bacterial functional groups as carbon sources for the nematodes. The different substrates clearly labeled different bacterial groups as evidenced by differential labeling of the PLFA patterns. The deep-sea nematode community incorporated a very limited amount of the label, and the isotope turnover model showed that the dynamics of the isotope transfer could not be attributed to bacterivory. The low enrichment of nematodes suggests a limited passive uptake of injected 13C-labeled substrates. The lack of accumulation suggests that the injected 13C-labeled dissolved organic carbon compounds are not important as carbon sources for deep-sea nematodes. Since earlier studies with isotopically enriched algae also found limited uptake by nematodes, the food sources of deep-sea nematodes remain unclear.

Research so far has provided little evidence that benthic biogeochemical cycling is affected by ocean acidification under realistic climate change scenarios. We measured nutrient exchange and sediment community oxygen consumption (SCOC) rates to estimate nitrification in natural coastal permeable and fine sandy sediments under pre-phytoplankton bloom and bloom conditions. Ocean acidification, as mimicked in the laboratory by a realistic pH decrease of 0.3, significantly reduced SCOC on average by 60% and benthic nitrification rates on average by 94% in both sediment types in February (pre-bloom period), but not in April (bloom period). No changes in macrofauna functional community (density, structural and functional diversity) were observed between ambient and acidified conditions, suggesting that changes in benthic biogeochemical cycling were predominantly mediated by changes in the activity of the microbial community during the short-term incubations (14 days), rather than by changes in engineering effects of bioturbating and bio-irrigating macrofauna. As benthic nitrification makes up the gross of ocean nitrification, a slowdown of this nitrogen cycling pathway in both permeable and fine sediments in winter, could therefore have global impacts on coupled nitrification-denitrification and hence eventually on pelagic nutrient availability.

This study describes and combines structural and functional aspects of deep-sea nematode assemblages from the Atlantic sector of the Southern Ocean. Samples were collected at six stations along the Prime Meridian (49–70°S), including a repeated sampling after one and a half months interval at the Polar Front (52°S), where meanwhile a seasonal phytoplankton bloom had settled. The aim was to gain insight in the latitudinal and temporal variability in nematode community structure and diet based on the generic composition and bulk fatty acid composition of the community, respectively. The results show that nematode assemblages along the transect differed relatively little and that they were all highly comparable to slope and abyssal communities elsewhere in the world in terms of nematode standing stock, diversity and composition. Nematode community composition was only weakly correlated with the community fatty acid composition, indicating that simply the occurrence of distinct genera or the proportion of nematode feeding types based on mouth morphology, cannot explain the variance in FA compositions of the communities. Moreover, the generally low FA content of nematodes suggests that they do not accumulate lipids for energy storage and that they may feed throughout the year on constantly available food sources. A year-round foraging activity could also explain the recorded lack of food uptake as a short-term response to the recently settled phytodetritus at the revisited Polar Front station. Nevertheless, the higher relative abundance of nematodes in the top centimeter layer of the sediment and the occurrence of the genus Leptolaimus only after phytodetritus had settled at the seafloor, suggests the recording of an early stage in a delayed response to the seasonal event.

A colonisation experiment was performed in situ at 2500 m water depth at the Arctic deep-sea long-term observatory HAUSGARTEN to determine the response of deep-sea nematodes to disturbed, newly available patches, enriched with organic matter. Cylindrical tubes,laterally covered with a 500 µm mesh, were filled with azoic deep-sea sediment and 13C-labelled food sources diatoms and bacteria). After 10 days of incubation the tubes were analysed for nematode response in terms of colonisation and uptake. Nematodes actively colonised the tubes,however with densities that only accounted for a maximum of 2.13% (51 ind.10 cm-2) of the ambient nematode assemblages. Densities did not differ according to the presence or absence of organic matter, nor according to the type of organic matter added. The fact that the organic matter did not function as an attractant to nematodes was confirmed by the absence of notable 13C assimilation by the colonising nematodes. Overall, colonisationappears to be a process that yields reproducible abundance and diversity patterns, with certain taxa showing more efficiency. Together with the high variability between the colonising nematode assemblages, this lends experimental support to the existence of a spatio-temporal mosaic that emerges from highly localised, partially stochastic community dynamics.

The common tube-building polychaete Lanice conchilega is known as a habitat structuring species and can form dense aggregations. The effects of L. conchilega on the surrounding benthic community have received little attention, especially in subtidal areas. Therefore, the presence of L. conchilega in different habitats in the North Sea and its effect on the abundance, species richness, diversity and community structure in these habitats are evaluated in the present paper, based on data from the ICES North Sea Benthos Survey of 2000. Lanice conchilega has a wide geographical distribution and a low habitat specialization, but optimally occurs in shallow fine sands. In the present study, the presence of L. conchilega resulted in a density increase and a significant (positive) correlation of the benthos density with the density of L. conchilega. Furthermore, the species richness (number of species) increased with increasing density of L. conchilega. This trend was, however, not consistent: the number of species reached more or less an asymptotic value or even decreased after reaching a critical density of L. conchilega (>500–1,000 ind/m²), as observed in shallow fine sands. The same overall pattern was detected concerning the expected number of species. The N1-diversity index showed similar or slightly higher values in L. conchilega patches compared to patches without L. conchilega. From the results of the community analysis, it can be concluded that the species, which were responsible for the increase of the diversity, belonged to the overall species-pool of that habitat. The effects on density and diversity differed between the four discerned habitats (shallow muddy sand, shallow fine sand, shallow medium sand and deep fine sand), and were most pronounced in shallow fine sands. These patterns can be attributed to the habitat structuring capacity of L. conchilega. The mechanisms responsible for the increase of the habitat quality in patches of L. conchilega can be summarized as (1) changes in the hydrodynamics, (2) increases of the habitat stability and oxygen supply, and (3) a creation of habitat heterogeneity in a uniform environment. In this way, L. conchilega alters the habitat characteristics and affects other organisms, and can therefore even be considered as an ecosystem engineer. In other words, L. conchilega patches are responsible for an increased habitat quality in an otherwise uniform habitat, which results in a higher survival of the surrounding benthic species.

This paper evaluates the effect of the tube-building, habitat structuring polychaete Lanice conchilega on the macrobenthic community and sediment characteristics of its habitat. To investigate which factors make species occur in a well-known bio-engineered habitat, macrofaunal and sedimentological data, gathered over a period of 10 years in a shallow, fine sediment bottom of the Belgian Part of the North Sea, were submitted to analyses. Both sediment composition and community structure of the associated macrofaunal matrix were affected by the presence of L. conchilega. The effect of the protruding tubes on hydrodynamics clearly resulted in the retention of fine sediment particles, while the increased coarse fraction was assumed to reflect a dynamic population build-up. This study confirmed that tube aggregations of L. conchilega expand the realized niche of several species without forming their own association. A species rank list was created according to each species’ association with L. conchilega. This species rank list is extensively discussed based on all ecological knowledge available. Species are favoured by the habitat modifying ability of the polychaete tubes, which create and regulate refuge for species, alter the interactions between local species and change the physical factors of the environment. This descriptive and correlative data study examines the ecological importance of the bioengineer L. conchilega on species level. 2007 Elsevier Ltd. All rights reserved.

Nematode genus assemblages were identified from four locations in coral degradation zones (CDZs) along the African east coast: Watamu and Tiwi Beach (Kenya) and Matemwe and Makunduchi (Zanzibar). Three microhabitat types were distinguished: coralline sediment, coral gravel and coral fragments. Nematode community composition was comparable to that of other studies dealing with the same habitat. The presence of a common genus pool in CDZs was reflected in the considerable similarities between samples. The addition of coral fragments as a habitat for nematodes resulted in an increased importance of taxa typical for coarse sediments and large substrata. Local and regional turnover were of the same order of magnitude. The structuring effect of microhabitat type clearly overrode the effect on a local and regional scale. Differences in sediment characteristics were more important in structuring the nematode assemblages than differences between the coralline sediment and coral fragments. No effect related to the three-dimensional structure of coral fragments was found. Differences between nematode assemblages in the coralline sediment and on coral fragments were attributed to the exposed nature of the latter habitat, its large surface area and its microbial or algal cover. Differences in available food sources were reflected in nematode trophic composition.