213 results on '"Katarkar, Atul'
Search Results
2. Small molecule interactions with biomacromolecules: selective sensing of human serum albumin by a hexanuclear manganese complex – photophysical and biological studies.
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Khatun, Rousunara, Dolai, Malay, Sasmal, Mihir, Katarkar, Atul, Islam, Abu Saleh Musha, Yasmin, Nasima, Maryum, Sana, Haribabu, Jebiti, and Ali, Mahammad
- Abstract
A covalently bonded hexanuclear neutral complex, [Mn
6 (μ3 -O)2 (3-MeO-salox)6 (OAc)2 (H2 O)4 ] (1), has been synthesized and characterized by single crystal X-ray diffraction analysis along with IR and HRMS studies. Complex 1 has been found to selectively interact with human serum albumin (HSA), a model transport protein. The interaction of 1 with HSA was investigated by monitoring the change in the absorbance value of HSA at λ = 280 nm with increasing concentration of 1. Likewise, fluorescence titrations were carried out under two conditions: (i) titration of a 5 μM solution of complex 1 with the gradual addition of HSA, showing a ∼9-fold fluorescence intensity enhancement at 424 nm, upon excitation at 300 nm; and (ii) upon excitation at 295 nm, titration of 5 μM HSA solution with the incremental addition of complex 1, showing a quenching of fluorescence intensity at 334 nm, with simultaneous development of a new emission band at 424 nm. A linear form of the Stern–Volmer equation gives KSV = 9.77 × 104 M−1 and the Benesi–Hildebrand plot yields the binding constant as KBH = 1.98 × 105 M−1 at 298 K. The thermodynamic parameters, ΔS°, ΔH°, and ΔG°, were estimated by using the van't Hoff relationship which infer the major contribution of hydrophobic interactions between HSA and 1. It was observed that quenching of HSA emission arises mainly through a dynamic quenching mechanism as indicated by the dependence of average lifetime 〈τ〉 on the concentration of 1. The changes in the CD (circular dichroism) spectral pattern of HSA in the presence of 1 clearly establish the variation of HSA secondary structure on interaction with 1. The most probable interaction region in HSA for 1 was determined from molecular docking studies which establish the preferential trapping of 1 in the subdomain IIA of site I in HSA and substantiated by the results of site-specific marker studies. Complex 1 was further evaluated for its antiproliferative effects in lung cancer A549 cells, which strictly inhibits the growth of the cells in both 2D and 3D mammospheres, indicating its potential application as an anticancer drug. [ABSTRACT FROM AUTHOR]- Published
- 2024
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3. Association of NQO1 C609T (Pro187Ser) with Risk of Oral Submucous Fibrosis in Eastern Indian Population
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Sanjit Mukherjee, Sweta Mohanty, Atul Katarkar, Richa Dhariwal, Basudev Mahato, Jay Gopal Ray, and Keya Chaudhuri
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areca nut, oral submucous fibrosis, nqo1, single nucleotide polymorphism, carcinogenesis. ,Biology (General) ,QH301-705.5 - Abstract
Objective: Oral submucous fibrosis (OSF) is a debilitating disease mainly attributed to chewing areca nut with a 7.4-13% malignant transformation rate. The present study explores the role of NADPH quinone oxidoreductase 1 (NQO1) C609T (Pro187Ser) polymorphism in susceptibility to OSF among habitual areca nut chewers in an eastern Indian population. Material and Methods: In this hospital-based study, 152 controls and 179 OSF cases were genotyped at NQO1 C609T polymorphic site by PCR-RFLP and its effect on NQO1 expression in OSF tissue was studied to determine the risk of the disease. Results: Overall, about 18% of the total OSF cases were detected carrying minor TT alleles (Ser/Ser) p=0.026. When categorized by age, both CT (Pro/Ser) and TT (Ser/Ser) alleles were significantly higher (p= 0.003 & 0.004 respectively) in cases above 40years of age. NQO1 protein was 42% reduced in buccal tissues of heterozygous (Pro/Ser) carriers, whereas a 70% reduction was observed in TT (Ser/Ser) OSF cases. Conclusion: Our study suggests that the NQO1 C609T polymorphism confers increased risk for OSF in habitual chewers.
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- 2021
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4. HSD17B7 gene in self‐renewal and oncogenicity of keratinocytes from Black versus White populations
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Xiaoying Xu, Beatrice Tassone, Paola Ostano, Atul Katarkar, Tatiana Proust, Jean‐Marc Joseph, Chiara Riganti, Giovanna Chiorino, Zoltan Kutalik, Karine Lefort, and Gian Paolo Dotto
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genetic cancer susceptibility ,HSD enzymes ,OXPHOS ,squamous cell carcinoma ,stem cell potential ,Medicine (General) ,R5-920 ,Genetics ,QH426-470 - Abstract
Abstract Human populations of Black African ancestry have a relatively high risk of aggressive cancer types, including keratinocyte‐derived squamous cell carcinomas (SCCs). We show that primary keratinocytes (HKCs) from Black African (Black) versus White Caucasian (White) individuals have on average higher oncogenic and self‐renewal potential, which are inversely related to mitochondrial electron transfer chain activity and ATP and ROS production. HSD17B7 is the top‐ranked differentially expressed gene in HKCs and Head/Neck SCCs from individuals of Black African versus Caucasian ancestries, with several ancestry‐specific eQTLs linked to its expression. Mirroring the differences between Black and White HKCs, modulation of the gene, coding for an enzyme involved in sex steroid and cholesterol biosynthesis, determines HKC and SCC cell proliferation and oncogenicity as well as mitochondrial OXPHOS activity. Overall, the findings point to a targetable determinant of cancer susceptibility among different human populations, amenable to prevention and management of the disease.
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- 2021
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5. Design and synthesis of a TICT-based red-emissive fluorescent probe for the rapid and selective detection of HSA in human biofluids and live cell imaging.
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Moni, Dolan, Sasmal, Mihir, Katarkar, Atul, Basu, Anamika, and Ali, Mahammad
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Here, we report the design and synthesis of a D⋯π⋯A-based fluorescent probe, (E)-4-(4-(dibutylamine)-2-hydroxystyryl)-1-methylquinolin-1-ium (DHMQ), which is nonfluorescent in ∼100% PBS buffer medium due to a twisted intra molecular charge transfer (TICT) phenomenon and it becomes highly fluorescent (∼149 fold) in the presence of human serum albumin (HSA), owing to the restriction of its intramolecular free rotation inside the hydrophobic binding cavity of HSA. The site-selective fluorescence displacement assay and molecular docking studies clearly reveal that DHMQ selectively binds at subdomain IB of HSA. The 3σ/slope method was adopted to determine the limit of detection (LOD) value, which was as low as 2.39 nM in ∼100% PBS medium, indicating its high sensitivity towards HSA. The low dissociation constant value [K
d = (1.066 ± 0.017) μM] suggests a strong complexation between the DHMQ and HSA. Importantly, it has been demonstrated that DHMQ is capable of detecting HSA in real human serum and urine samples and was found to be suitable for live cell imaging of HSA. [ABSTRACT FROM AUTHOR]- Published
- 2024
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6. NOTCH1 gene amplification promotes expansion of Cancer Associated Fibroblast populations in human skin
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Atul Katarkar, Giulia Bottoni, Andrea Clocchiatti, Sandro Goruppi, Pino Bordignon, Francesca Lazzaroni, Ilaria Gregnanin, Paola Ostano, Victor Neel, and G. Paolo Dotto
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Science - Abstract
The presence of genomic alterations in cancer associated fibroblasts (CAFs) is largely unexplored. The authors show that frequent NOTCH1 gene amplification and overexpression render CAFs resistant to the UVA-induced DNA damage response (DDR) and promote cancer/stromal cells expansion, which can be reversed by NOTCH inhibition.
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- 2020
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7. HSD17B7 gene in self‐renewal and oncogenicity of keratinocytes from Black versus White populations
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Xu, Xiaoying, Tassone, Beatrice, Ostano, Paola, Katarkar, Atul, Proust, Tatiana, Joseph, Jean‐Marc, Riganti, Chiara, Chiorino, Giovanna, Kutalik, Zoltan, Lefort, Karine, and Dotto, Gian Paolo
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- 2021
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8. A microenvironment-sensitive red emissive probe with a large Stokes shift for specific recognition and quantification of serum albumin in complex biofluids and live cells.
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Sasmal, Mihir, Islam, Abu Saleh Musha, Moni, Dolan, Katarkar, Atul, and Mahammad Ali
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Human serum albumin (HSA) is regarded as a useful biomarker for rapid medical diagnosis of various disorders mainly related to the kidneys and liver. Hence, it is crucial to identify and monitor the HSA level in complex biofluids (urine and blood samples) using a simple approach. Herein, we have designed and synthesized an intramolecular charge transfer (ICT) based environment-sensitive fluorescent molecular probe, (E)-2-(3-(2-(5-methoxy-1H-indol-3-yl)vinyl)-5,5-dimethylcyclohex-2-en-1-ylidene)malononitrile (DCI-MIN), that can selectively interact with HSA in PBS buffer solution and exhibit a ~78-fold enhancement in fluorescence intensity with a significant Stokes shift (~126 nm), which is important to avoid interference from the excitation light. The significant red fluorescence response can be attributed to the suppression of free intramolecular rotation of the DCI-MIN probe inside the hydrophobic binding cavity of HSA and the low polar microenvironment present within HSA. According to the 3σ/slope method, the detection limit was found to be 1.01 nM (0.0671 mg L
-1 ) in aqueous solutions, which is significantly lower than the normal level of HSA in healthy urine and blood serum, indicating its high sensitivity. DCI-MIN has the ability to exhibit useful applications, including the detection and quantification of HSA concentration in complex biofluids (human urine and blood samples) as well as the imaging of serum albumin in living cells. [ABSTRACT FROM AUTHOR]- Published
- 2024
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9. CSL controls telomere maintenance and genome stability in human dermal fibroblasts
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Giulia Bottoni, Atul Katarkar, Beatrice Tassone, Soumitra Ghosh, Andrea Clocchiatti, Sandro Goruppi, Pino Bordignon, Paris Jafari, Fabio Tordini, Thomas Lunardi, Wolfram Hoetzenecker, Victor Neel, Joachim Lingner, and G. Paolo Dotto
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Science - Abstract
Conversion of dermal fibroblasts into Cancer Associated Fibroblasts (CAFs) can play an important role in keratinocyte tumour development. Here the authors reveal that CSL plays a role in maintenance of telomeres and genomic integrity in both dermal fibroblasts and CAFs.
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- 2019
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10. A differentially selective probe for trivalent chemosensor upon single excitation with cell imaging application: potential applications in combinatorial logic circuit and memory devices
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Das, Dipankar, Alam, Rabiul, Katarkar, Atul, and Ali, Mahammad
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- 2019
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11. N-Nitrosation Based Fluorescence Turn-On Nitric Oxide Probe: Kinetic and Cell Imaging Studies
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Dutta, Ananya, primary, Maiti, Debjani, additional, Katarkar, Atul, additional, Sasmal, Mihir, additional, Khatun, Rousunara, additional, Moni, Dolan, additional, Habibullah, Mansur, additional, and Ali, Mahammad, additional
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- 2023
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12. A novel three-input monomolecular logic circuit on a rhodamine inspired bio-compatible bi-compartmental molecular platform
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Mistri, Tarun, Bhowmick, Rahul, Katarkar, Atul, Chaudhuri, Keya, and Ali, Mahammad
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- 2017
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13. Neo-tanshinlactone D-ring modified novel analogues induce apoptosis in human breast cancer cell via DNA damage
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Banerji, Biswadip, Killi, Sunil Kumar, Katarkar, Atul, Chatterjee, Satadru, Tangella, Yellaiah, Prodhan, Chandraday, and Chaudhuri, Keya
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- 2017
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14. NOTCH1 gene amplification promotes expansion of Cancer Associated Fibroblast populations in human skin
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Katarkar, Atul, Bottoni, Giulia, Clocchiatti, Andrea, Goruppi, Sandro, Bordignon, Pino, Lazzaroni, Francesca, Gregnanin, Ilaria, Ostano, Paola, Neel, Victor, and Dotto, G. Paolo
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- 2020
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15. A self-assembled nanoprobe based on Schiff base for the rapid and selective detection of serum albumin with cell imaging applications.
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Moni, Dolan, Sasmal, Mihir, Islam, Abu Saleh Musha, Dutta, Ananya, Maiti, Debjani, Khatun, Rousunara, Katarkar, Atul, and Ali, Mahammad
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SCHIFF bases ,SERUM albumin ,CELL imaging ,HYDROGEN bonding ,MOLECULAR docking ,MULTISPECTRAL imaging - Abstract
Here, we report the design and synthesis of a Schiff base probe, DBNHC ((E)-2-(2,4-dihydroxybenzylidene)-N-(naphthalen-1-yl)hydrazine-1-carbothioamide), and its interaction with bovine serum albumin (BSA). In ∼100% PBS buffer, the probe DBNHC can self-assemble into nonfluorescent nanoaggregates due to the aggregation caused quenching (ACQ) effect. However, it becomes highly fluorescent (∼14 fold) in the presence of BSA which facilitates the disassembly of nanoaggregates into its monomer. The site-selective fluorescence displacement assay and molecular docking simulations reveal that mainly hydrogen bonding, π⋯sulphur and π⋯alkyl interactions are responsible for the disassembly of nanoaggregates leading to encapsulation of DBNHC monomer at site II in BSA, resulting in a cyan green emission. The detection limit determined by the 3σ/slope method was found to be 58 nM, and the lower dissociation constant [K
d = (1.506 ± 0.196) μM] value suggests strong binding between the probe and BSA. Further, DBNHC was used for cell incubation and in vitro fluorescence imaging of BSA. [ABSTRACT FROM AUTHOR]- Published
- 2024
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16. Androgen receptor functions as transcriptional repressor of cancer-associated fibroblast activation
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Clocchiatti, Andrea, Ghosh, Soumitra, Procopio, Maria-Giuseppina, Mazzeo, Luigi, Bordignon, Pino, Ostano, Paola, Goruppi, Sandro, Bottoni, Giulia, Katarkar, Atul, Levesque, Mitchell, Kolblinger, Peter, Dummer, Reinhard, Neel, Victor, Ozdemir, Berna C., and Dotto, G. Paolo
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Androgen receptors -- Research ,Cancer -- Risk factors -- Genetic aspects -- Prevention -- Care and treatment ,Aging (Biology) -- Analysis ,Gene expression -- Research ,Chemotherapy -- Usage ,Skin ,Androgens ,Tumors ,Skin cancer ,Cancer cells ,Cancer prevention ,Genes ,Transcription (Genetics) ,Squamous cell carcinoma ,Keratosis ,Health care industry - Abstract
The aging-associated increase of cancer risk is linked with stromal fibroblast senescence and concomitant cancer- associated fibroblast (CAF) activation. Surprisingly little is known about the role of androgen receptor (AR) signaling in this context.We have found downmodulated AR expression in dermal fibroblasts underlying premalignant skin cancer lesions (actinic keratoses and dysplastic nevi) as well as in CAFs from the 3 major skin cancer types, squamous cell carcinomas (SCCs), basal cell carcinomas, and melanomas. Functionally, decreased AR expression in primary human dermal fibroblasts (HDFs) from multiple individuals induced early steps of CAF activation, and in an orthotopic skin cancer model, AR loss in HDFs enhanced tumorigenicity of SCC and melanoma cells. Forming a complex, AR converged with CSL/RBP-J[kappa] in transcriptional repression of key CAF effector genes. AR and CSL were positive determinants of each other's expression, with BET inhibitors, which counteract the effects of decreased CSL, restoring AR expression and activity in CAFs. Increased AR expression in these cells overcame the consequences of CSL loss and was by itself sufficient to block the growth and tumor-enhancing effects of CAFs on neighboring cancer cells. As such, the findings establish AR as a target for stroma-focused cancer chemoprevention and treatment., IntroductionThe aging-associated increase of many cancer types has been linked with stromal fibroblast senescence and concomitant production of diffusible growth factors, cytokines, and extracellular matrix/ remodeling proteins (1) that are [...]
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- 2018
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17. CSL controls telomere maintenance and genome stability in human dermal fibroblasts
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Bottoni, Giulia, Katarkar, Atul, Tassone, Beatrice, Ghosh, Soumitra, Clocchiatti, Andrea, Goruppi, Sandro, Bordignon, Pino, Jafari, Paris, Tordini, Fabio, Lunardi, Thomas, Hoetzenecker, Wolfram, Neel, Victor, Lingner, Joachim, and Paolo Dotto, G.
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- 2019
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18. A Self-Assembled Nanoprobe Based on Schiff Base for the Rapid and Selective Detection of Serum Albumin with Cell Imaging Applications
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Moni, Dolan, primary, Sasmal, Mihir, additional, Islam, Abu Saleh Musha, additional, Dutta, Ananya, additional, Maiti, Debjani, additional, Khatun, Rousunara, additional, Katarkar, Atul, additional, and Ali, Mahammad, additional
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- 2023
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19. Association of oral tumor suppressor gene deleted in oral cancer-1 (DOC-1) in progression of oral precancer to cancer
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Katarkar, Atul, Patel, Leelavati, Mukherjee, Sanjit, Ray, Jay Gopal, Haldar, Pallab Kanti, and Chaudhuri, Keya
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- 2015
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20. Oxime Based Selective Fluorescent Sensor for Arsenate Ion in a Greener Way with Bio-Imaging Application
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Dolai, Malay, Alam, Rabiul, Katarkar, Atul, Chaudhuri, Keya, and Ali, Mahammad
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- 2016
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21. Effect of Lysyl Oxidase G473A Polymorphism on Lysyl Oxidase and Total Soluble Collagen Expression in Oral Submucous Fibrosis
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Atul Katarkar, Basudev Mahato, Jay Gopal Ray, Sanjit Mukherjee, Richa Dhariwal, Keya Chaudhuri, and Sweta Mohanty
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collagen ,Adult ,Male ,Adolescent ,India ,Lysyl oxidase ,Single-nucleotide polymorphism ,Oral Submucous Fibrosis ,Polymorphism, Single Nucleotide ,Protein-Lysine 6-Oxidase ,Young Adult ,Western blot ,Fibrosis ,Polymorphism (computer science) ,single nucleotide polymorphism ,Risk Factors ,Genotype ,medicine ,Humans ,Genetic Predisposition to Disease ,Child ,medicine.diagnostic_test ,business.industry ,Infant, Newborn ,Infant ,General Medicine ,medicine.disease ,Prognosis ,Molecular biology ,Oral submucous fibrosis ,Case-Control Studies ,Child, Preschool ,Immunohistochemistry ,Female ,business ,lysyl oxidase ,Research Article ,Follow-Up Studies - Abstract
Background: Oral submucous fibrosis (OSF) is a debilitating collagen-metabolic disorder leading to submucosal fibrosis and trismus. Lysyl oxidase (LOX), a critical collagen biosynthetic enzyme, is up-regulated in OSF. Polymorphisms in the Lysyl oxidase gene have been associated with increased risk of OSF and might affect normal collagen synthesis, accumulation, or degradation, crucial in determining fibrosis severity. Methods: One hundred OSF cases and 100 controls were genotyped for LOX G473A(Arg158Gln) polymorphism by polymerase chain reaction-restriction fragment length polymorphism. The expression of LOX was estimated both by quantitative mRNA analysis and western blot. Total soluble collagen was evaluated from mucosal tissue obtained from OSF cases. Immunohistochemical (IHC) localization of type 1 collagen was performed in mucosal tissue obtained from patients carrying various genotypes. Results: Heterozygous G473A genotype was significantly higher in OSF cases [2.063(95% CI =1.059-4.016)], among 26-40 years age-group [4.375(95% CI=1.323-14.267),p=0.029] and in male patients [2.38 (95% CI= 1.107-5.121), p= 0.042]. LOX expression was significantly higher in cases of the heterozygous or homozygous carrier (p
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- 2021
22. COL1A2 Polymorphism contributes to Oral submucous fibrosis: A possible role in inducing alternative splicing in areca chewers
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Jay Gopal Ray, Keya Chaudhuri, Atul Katarkar, Ushapati Roy, and Sanjit Mukherjee
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Otorhinolaryngology ,Oral submucous fibrosis ,biology ,business.industry ,Alternative splicing ,Cancer research ,Medicine ,business ,medicine.disease ,biology.organism_classification ,Areca - Published
- 2020
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23. Phenazine-Embedded Copper(II) Complex as a Fluorescent Probe for the Detection of NO and HNO with a Bioimaging Application
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Mihir Sasmal, Sumana Gangopadhyay, Mahammad Ali, Debjani Maiti, Abu Saleh Musha Islam, Ananya Dutta, Sholanki Ganguly, and Atul Katarkar
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Biomaterials ,chemistry.chemical_compound ,chemistry ,Biochemistry (medical) ,Phenazine ,Biomedical Engineering ,chemistry.chemical_element ,General Chemistry ,Copper ,Fluorescence ,Nuclear chemistry - Abstract
We report a novel phenazine-embedded fluorescent probe (2-[2-(pyridin-2-ylmethoxy)-phenyl]-1H-imidazo[4,5-b]phenazine, PIP), which upon complexation with Cu(II)-ion-forming [(PIP)CuII(Cl)] becomes ...
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- 2019
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24. HSD17B7 gene in self‐renewal and oncogenicity of keratinocytes from Black versus White populations
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Atul Katarkar, Beatrice Tassone, Gian Paolo Dotto, Karine Lefort, Jean-Marc Joseph, Zoltán Kutalik, Xiaoying Xu, Paola Ostano, Giovanna Chiorino, Tatiana Proust, and Chiara Riganti
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Keratinocytes ,squamous cell carcinoma ,0301 basic medicine ,Cell ,stem cell potential ,Disease ,Biology ,Oncogenicity ,Article ,03 medical and health sciences ,0302 clinical medicine ,genetic cancer susceptibility ,Gene expression ,medicine ,Humans ,Gene ,Cell Proliferation ,Cancer ,Skin ,Cell growth ,HSD enzymes ,Oncogenes ,Articles ,OXPHOS ,White (mutation) ,030104 developmental biology ,medicine.anatomical_structure ,Sex steroid ,Carcinoma, Squamous Cell ,Cancer research ,Molecular Medicine ,030217 neurology & neurosurgery - Abstract
Human populations of Black African ancestry have a relatively high risk of aggressive cancer types, including keratinocyte‐derived squamous cell carcinomas (SCCs). We show that primary keratinocytes (HKCs) from Black African (Black) versus White Caucasian (White) individuals have on average higher oncogenic and self‐renewal potential, which are inversely related to mitochondrial electron transfer chain activity and ATP and ROS production. HSD17B7 is the top‐ranked differentially expressed gene in HKCs and Head/Neck SCCs from individuals of Black African versus Caucasian ancestries, with several ancestry‐specific eQTLs linked to its expression. Mirroring the differences between Black and White HKCs, modulation of the gene, coding for an enzyme involved in sex steroid and cholesterol biosynthesis, determines HKC and SCC cell proliferation and oncogenicity as well as mitochondrial OXPHOS activity. Overall, the findings point to a targetable determinant of cancer susceptibility among different human populations, amenable to prevention and management of the disease., Differences in individuals' cancer susceptibility can be attributed, in part, to specific genetic and epigenetic variations. Human populations of Black African ancestry have a higher risk of aggressive cancer of various types, including keratinocyte‐derived squamous cell carcinomas (SCCs).
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- 2021
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25. Effect of Lysyl Oxidase G473 A Polymorphism on Lysyl Oxidase and Total Soluble Collagen Expression in Oral Submucous Fibrosis
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Mukherjee, Sanjit, primary, Katarkar, Atul, additional, Dhariwal, Richa, additional, Mohanty, Sweta, additional, Mahato, Basudev, additional, Ray, Jay, additional, and Chaudhuri, Keya, additional
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- 2021
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26. Association of NQO1 C609T (Pro187Ser) with Risk of Oral Submucous Fibrosis in Eastern Indian Population
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Mukherjee, Sanjit, primary, Mohanty, Sweta, primary, Katarkar, Atul, primary, Dhariwal, Richa, primary, Mahato, Basudev, primary, Ray, Jay Gopal, primary, and Chaudhuri, Keya, primary
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- 2021
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27. Sustained androgen receptor signaling is a determinant of melanoma cell growth potential and tumorigenesis
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Ma, Min; https://orcid.org/0000-0003-2501-0902, Ghosh, Soumitra; https://orcid.org/0000-0002-8376-8677, Tavernari, Daniele; https://orcid.org/0000-0001-5981-7363, Katarkar, Atul; https://orcid.org/0000-0002-5662-2621, Clocchiatti, Andrea; https://orcid.org/0000-0003-4339-2553, Mazzeo, Luigi; https://orcid.org/0000-0002-8253-6575, Samarkina, Anastasia; https://orcid.org/0000-0003-1553-4366, Epiney, Justine; https://orcid.org/0000-0001-8164-0146, Yu, Yi-Ru; https://orcid.org/0000-0002-3562-3502, Ho, Ping-Chih; https://orcid.org/0000-0003-3078-3774, Levesque, Mitchell P; https://orcid.org/0000-0001-5902-9420, Özdemir, Berna C; https://orcid.org/0000-0002-7380-0055, Ciriello, Giovanni; https://orcid.org/0000-0003-2021-8683, Dummer, Reinhard; https://orcid.org/0000-0002-2279-6906, Dotto, G Paolo; https://orcid.org/0000-0002-1197-8448, Ma, Min; https://orcid.org/0000-0003-2501-0902, Ghosh, Soumitra; https://orcid.org/0000-0002-8376-8677, Tavernari, Daniele; https://orcid.org/0000-0001-5981-7363, Katarkar, Atul; https://orcid.org/0000-0002-5662-2621, Clocchiatti, Andrea; https://orcid.org/0000-0003-4339-2553, Mazzeo, Luigi; https://orcid.org/0000-0002-8253-6575, Samarkina, Anastasia; https://orcid.org/0000-0003-1553-4366, Epiney, Justine; https://orcid.org/0000-0001-8164-0146, Yu, Yi-Ru; https://orcid.org/0000-0002-3562-3502, Ho, Ping-Chih; https://orcid.org/0000-0003-3078-3774, Levesque, Mitchell P; https://orcid.org/0000-0001-5902-9420, Özdemir, Berna C; https://orcid.org/0000-0002-7380-0055, Ciriello, Giovanni; https://orcid.org/0000-0003-2021-8683, Dummer, Reinhard; https://orcid.org/0000-0002-2279-6906, and Dotto, G Paolo; https://orcid.org/0000-0002-1197-8448
- Abstract
Melanoma susceptibility differs significantly in male versus female populations. Low levels of androgen receptor (AR) in melanocytes of the two sexes are accompanied by heterogeneous expression at various stages of the disease. Irrespective of expression levels, genetic and pharmacological suppression of AR activity in melanoma cells blunts proliferation and induces senescence, while increased AR expression or activation exert opposite effects. AR down-modulation elicits a shared gene expression signature associated with better patient survival, related to interferon and cytokine signaling and DNA damage/repair. AR loss leads to dsDNA breakage, cytoplasmic leakage, and STING activation, with AR anchoring the DNA repair proteins Ku70/Ku80 to RNA Pol II and preventing RNA Pol II–associated DNA damage. AR down-modulation or pharmacological inhibition suppresses melanomagenesis, with increased intratumoral infiltration of macrophages and, in an immune-competent mouse model, cytotoxic T cells. AR provides an attractive target for improved management of melanoma independent of patient sex.
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- 2021
28. Comparative evaluation of genotoxicity by micronucleus assay in the buccal mucosa over comet assay in peripheral blood in oral precancer and cancer patients
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Katarkar, Atul, Mukherjee, Sanjit, Khan, Masood H., Ray, Jay G., and Chaudhuri, Keya
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- 2014
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29. In-silico structural and functional characterization of a V. cholerae O395 hypothetical protein containing a PDZ1 and an uncommon protease domain.
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Avirup Dutta, Atul Katarkar, and Keya Chaudhuri
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Medicine ,Science - Abstract
Vibrio cholerae, the causative agent of epidemic cholera, has been a constant source of concern for decades. It has constantly evolved itself in order to survive the changing environment. Acquisition of new genetic elements through genomic islands has played a major role in its evolutionary process. In this present study a hypothetical protein was identified which was present in one of the predicted genomic island regions of the large chromosome of V. cholerae O395 showing a strong homology with a conserved phage encoded protein. In-silico physicochemical analysis revealed that the hypothetical protein was a periplasmic protein. Homology modeling study indicated that the hypothetical protein was an unconventional and atypical serine protease belonging to HtrA protein family. The predicted 3D-model of the hypothetical protein revealed a catalytic centre serine utilizing a single catalytic residue for proteolysis. The predicted catalytic triad may help to deduce the active site for the recruitment of the substrate for proteolysis. The active site arrangements of this predicted serine protease homologue with atypical catalytic triad is expected to allow these proteases to work in different environments of the host.
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- 2013
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30. A coumarin embedded highly sensitive nitric oxide fluorescent sensor: kinetic assay and bio-imaging applications
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Debjani Maiti, Mahammad Ali, Ananya Dutta, Abu Saleh Musha Islam, Mihir Sasmal, and Atul Katarkar
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Detection limit ,chemistry.chemical_classification ,Biocompatibility ,Chemistry ,Carboxylic acid ,Organic Chemistry ,Photochemistry ,Biochemistry ,Fluorescence ,Fluorescence spectroscopy ,Nitric oxide ,chemistry.chemical_compound ,Stability constants of complexes ,Coumarins ,Physical and Theoretical Chemistry ,Molecular probe - Abstract
Fluorescence spectroscopy is a significant bio-analytical technique for specific detection of nitric oxide (NO) and for broadcasting the in vitro and in vivo biological activities of this gasotransmitter. Herein, a benzo-coumarin embedded smart molecular probe (BCM) is employed for NO sensing through detailed fluorescence studies in purely aqueous medium. All the spectroscopic analysis and literature reports clearly validate the mechanistic insight of this sensing strategy i.e., the initial formation of 1,2,3,4-oxatriazole on treatment of the probe with NO which finally converted to its carboxylic acid derivative. This oxatriazole formation results in a drastic enhancement in fluoroscence intensity due to the photoinduced electron transfer (PET) effect. The kinetic investigation unveils the second and first-order dependency on [NO] and [BCM] respectively. The very low detection limit (16 nM), high fluorescence enhancement (123 fold) in aqueous medium and good formation constant (Kf = (4.33 ± 0.48) × 104 M−1) along with pH invariability, non-cytotoxicity, biocompatibility and cell permeability make this probe a very effective one for tracking NO intracellularly.
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- 2020
31. Sustained androgen receptor signaling is a determinant of melanoma cell growth potential and tumorigenesis
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Giovanni Ciriello, Ping-Chih Ho, Luigi Mazzeo, Justine Epiney, Atul Katarkar, Yi-Ru Yu, G. Paolo Dotto, Andrea Clocchiatti, Daniele Tavernari, Reinhard Dummer, Mitchell P. Levesque, Anastasia Samarkina, Min Ma, Berna C. Özdemir, Soumitra Ghosh, University of Zurich, and Dotto, G Paolo
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0301 basic medicine ,Male ,DNA Repair ,Carcinogenesis ,medicine.medical_treatment ,Mice, SCID ,medicine.disease_cause ,Mice ,0302 clinical medicine ,Interferon ,Mice, Inbred NOD ,Gene expression ,Cytotoxic T cell ,Immunology and Allergy ,Melanoma ,0303 health sciences ,Chemistry ,10177 Dermatology Clinic ,3. Good health ,Gene Expression Regulation, Neoplastic ,Cytokine ,Receptors, Androgen ,Stimulator of interferon genes ,030220 oncology & carcinogenesis ,2723 Immunology and Allergy ,Female ,RNA Polymerase II ,Signal transduction ,medicine.drug ,Signal Transduction ,DNA repair ,DNA damage ,Immunology ,Down-Regulation ,610 Medicine & health ,Biology ,Article ,03 medical and health sciences ,Cell Line, Tumor ,medicine ,Gene silencing ,Animals ,Humans ,030304 developmental biology ,Cell Proliferation ,2403 Immunology ,Cell growth ,medicine.disease ,Androgen receptor ,Mice, Inbred C57BL ,030104 developmental biology ,Cancer research ,610 Medizin und Gesundheit ,Human Disease Genetics ,DNA Damage - Abstract
Ma et al. uncovers an essential role of AR signaling in melanoma cell expansion and tumorigenesis, with loss of AR activity inducing cellular senescence, genomic DNA breakage, a STING-dependent inflammatory cascade, and immune cell recruitment, providing an attractive venue for new combination approaches to disease management., Melanoma susceptibility differs significantly in male versus female populations. Low levels of androgen receptor (AR) in melanocytes of the two sexes are accompanied by heterogeneous expression at various stages of the disease. Irrespective of expression levels, genetic and pharmacological suppression of AR activity in melanoma cells blunts proliferation and induces senescence, while increased AR expression or activation exert opposite effects. AR down-modulation elicits a shared gene expression signature associated with better patient survival, related to interferon and cytokine signaling and DNA damage/repair. AR loss leads to dsDNA breakage, cytoplasmic leakage, and STING activation, with AR anchoring the DNA repair proteins Ku70/Ku80 to RNA Pol II and preventing RNA Pol II–associated DNA damage. AR down-modulation or pharmacological inhibition suppresses melanomagenesis, with increased intratumoral infiltration of macrophages and, in an immune-competent mouse model, cytotoxic T cells. AR provides an attractive target for improved management of melanoma independent of patient sex., Graphical Abstract
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- 2020
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32. Androgen receptor functions as transcriptional repressor of cancer-associated fibroblast activation
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G. Paolo Dotto, Soumitra Ghosh, Pino Bordignon, Maria-Giuseppina Procopio, Atul Katarkar, Mitchell P. Levesque, Luigi Mazzeo, Andrea Clocchiatti, Victor A. Neel, Sandro Goruppi, Berna C. Özdemir, Giulia Bottoni, Paola Ostano, Peter Kölblinger, and Reinhard Dummer
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Transcriptional Activation ,0301 basic medicine ,Skin Neoplasms ,Stromal cell ,Cell ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Cancer-Associated Fibroblasts ,Mice, Inbred NOD ,Cell Line, Tumor ,medicine ,Animals ,Humans ,Fibroblast ,Chemistry ,Melanoma ,Cancer ,General Medicine ,medicine.disease ,Neoplasm Proteins ,3. Good health ,Repressor Proteins ,Androgen receptor ,030104 developmental biology ,medicine.anatomical_structure ,Receptors, Androgen ,030220 oncology & carcinogenesis ,Cancer cell ,Cancer research ,Female ,Skin cancer ,Research Article - Abstract
The aging-associated increase of cancer risk is linked with stromal fibroblast senescence and concomitant cancer-associated fibroblast (CAF) activation. Surprisingly little is known about the role of androgen receptor (AR) signaling in this context. We have found downmodulated AR expression in dermal fibroblasts underlying premalignant skin cancer lesions (actinic keratoses and dysplastic nevi) as well as in CAFs from the 3 major skin cancer types, squamous cell carcinomas (SCCs), basal cell carcinomas, and melanomas. Functionally, decreased AR expression in primary human dermal fibroblasts (HDFs) from multiple individuals induced early steps of CAF activation, and in an orthotopic skin cancer model, AR loss in HDFs enhanced tumorigenicity of SCC and melanoma cells. Forming a complex, AR converged with CSL/RBP-Jκ in transcriptional repression of key CAF effector genes. AR and CSL were positive determinants of each other’s expression, with BET inhibitors, which counteract the effects of decreased CSL, restoring AR expression and activity in CAFs. Increased AR expression in these cells overcame the consequences of CSL loss and was by itself sufficient to block the growth and tumor-enhancing effects of CAFs on neighboring cancer cells. As such, the findings establish AR as a target for stroma-focused cancer chemoprevention and treatment.
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- 2018
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33. Role of matrix metalloproteinase-9 polymorphisms in basement membrane degradation and pathogenesis of oral submucous fibrosis
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Keya Chaudhuri, Chandraday Prodhan, Jay Gopal Ray, Atul Katarkar, and Sanjit Mukherjee
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0301 basic medicine ,Basement membrane ,Pathology ,medicine.medical_specialty ,medicine.diagnostic_test ,Single-nucleotide polymorphism ,Biology ,medicine.disease ,Pathogenesis ,Extracellular matrix ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,medicine.anatomical_structure ,Oral submucous fibrosis ,030220 oncology & carcinogenesis ,Biopsy ,Genotype ,Genetics ,medicine ,Collagenase ,Genetics (clinical) ,medicine.drug - Abstract
Oral submucous fibrosis (OSMF) is regarded as a collagen and collagenase metabolic disorder. Aberrant expression of matrix metalloproteinases (especially MMP-9) plays important role in remodeling of extracellular matrix (ECM) during development of OSMF. Single nucleotide polymorphisms (SNPs) in MMP-9 promoter and coding region have been demonstrated to be associated with several diseases. In this case-control study, 196 controls and 189 OSMF patients were genotyped at four MMP-9 polymorphic sites on −1562C>T, R279Q, P574R and R688Q loci by Polymerase Chain Reaction - Restriction Fragment Length Polymorphism (PCR-RFLP) method to determine the susceptibility to OSMF. The functional effect of SNPs to the development of OSMF was analyzed by studying the expression of MMP-9, collagen type-I and IV in oral biopsy tissues. R279Q SNP was found to be associated with OSMF [OR 1.5, CI (1.04–2.43), p = 0.03]. The 574R and 668Q alleles were significantly associated with early age group at 2.08 (p = 0.007) and 2.12 (p = 0.011) fold risk to OSMF respectively. MDR analysis showed that -1562C>T and R688Q SNPs were in strong synergy (IG = 0.95%, p = 0.0032) with increased risk of OSMF. Genotypic and functional study revealed definitive role of MMP-9 coding SNPs R279Q, P574R and R668Q in the pathogenesis of OSMF with strong predictive and prognostic value to determine OSMF at early stages in the areca chewers. Pathologically, over-expression of MMP-9 leads to decrease in collagen type-IV and epithelial thinning which contribute to basement membrane degradation along with continuous accumulation of collagen type-I enhanced by MMP-9 −1562C>T, R279Q, P574R and R688Q SNPs, resulting into early onset of OSMF.
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- 2018
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34. Synthesis and DNA-Binding Studies of A New Cyclic Dimeric Symmetrical Pseudo-Turn Mimetic
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Biswadip Banerji, Atul Katarkar, D. Srinivas, Sunil Kumar Killi, Satadru Chatterjee, Chandraday Prodhan, and Keya Chaudhuri
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Turn (biochemistry) ,chemistry.chemical_compound ,chemistry ,Stereochemistry ,General Chemistry ,DNA ,Minor groove - Published
- 2018
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35. Sustained androgen receptor signaling is a determinant of melanoma cell growth potential and tumorigenesis
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Ma, Min, primary, Ghosh, Soumitra, additional, Tavernari, Daniele, additional, Katarkar, Atul, additional, Clocchiatti, Andrea, additional, Mazzeo, Luigi, additional, Samarkina, Anastasia, additional, Epiney, Justine, additional, Yu, Yi-Ru, additional, Ho, Ping-Chih, additional, Levesque, Mitchell P., additional, Özdemir, Berna C., additional, Ciriello, Giovanni, additional, Dummer, Reinhard, additional, and Dotto, G. Paolo, additional
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- 2020
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36. COL1A2 Polymorphism contributes to Oral submucous fibrosis: A possible role in inducing alternative splicing in areca chewers
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Katarkar, Atul, primary, Roy, Ushapati, additional, Mukherjee, Sanjit, additional, Ray, Jay G., additional, and Chaudhuri, Keya, additional
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- 2020
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37. A coumarin embedded highly sensitive nitric oxide fluorescent sensor: kinetic assay and bio-imaging applications
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Maiti, Debjani, primary, Islam, Abu Saleh Musha, additional, Sasmal, Mihir, additional, Dutta, Ananya, additional, Katarkar, Atul, additional, and Ali, Mahammad, additional
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- 2020
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38. A novel three-input monomolecular logic circuit on a rhodamine inspired bio-compatible bi-compartmental molecular platform
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Keya Chaudhuri, Mahammad Ali, Tarun Mistri, Atul Katarkar, and Rahul Bhowmick
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010405 organic chemistry ,Chemistry ,String (computer science) ,Biophysics ,Binary number ,Nanotechnology ,General Chemistry ,Construct (python library) ,010402 general chemistry ,Condensed Matter Physics ,Biocompatible material ,01 natural sciences ,Biochemistry ,Atomic and Molecular Physics, and Optics ,0104 chemical sciences ,Rhodamine ,chemistry.chemical_compound ,Simple (abstract algebra) ,Logic gate ,Biological system ,Hardware_LOGICDESIGN - Abstract
Methodological synthesis of a new biocompatible bi-compartmental rhodamine based probe (L3) provides a multi-inputs and multi-outputs molecular logic circuit based on simple chemosensing phenomena. Spectroscopic responses of Cu2+ and Hg2+ towards L3 together with reversible binding of S2- with L3-Cu2+ and L3-Hg2+ complexes help us to construct a thee-input molecular circuit on their control and sequential addition to a solution of L3 in a mixed organo-aqueous medium. We have further successfully encoded binary digits out of these inputs and outputs which may convert a three-digit input string into a two-digit output string resulting a simple monomolecular logic circuit. Such a molecular ‘Boolean’ logic operation may improve the complexity of logic gate circuitry and computational speed and may be useful to employ in potential biocompatible molecular logic platforms.
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- 2017
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39. Fluorescent sensing of Al 3+ by benzophenone based Schiff base chemosensor and live cell imaging applications: Impact of keto-enol tautomerism
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Antonio Bauzá, Keya Chaudhuri, Sanchita Goswami, Antonio Frontera, Atul Katarkar, Yeasin Sikdar, Dilip K. Maiti, Ritwik Modak, and Barnali Naskar
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Schiff base ,010405 organic chemistry ,Stereochemistry ,Metals and Alloys ,Keto–enol tautomerism ,Time-dependent density functional theory ,Carbon-13 NMR ,010402 general chemistry ,Condensed Matter Physics ,01 natural sciences ,Tautomer ,Combinatorial chemistry ,Fluorescence ,Fluorescence spectroscopy ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,chemistry.chemical_compound ,chemistry ,Materials Chemistry ,Benzophenone ,Electrical and Electronic Engineering ,Instrumentation - Abstract
Developing simple probes to sense Al 3+ in vivo and in vitro in real time is highly desirable as Al 3+ imbalance has been linked to a variety of diseases in human being. Here, we introduce a new, highly selective and sensitive Schiff base chemosensor, H 2 bpet , based on benzophenone that can detect Al 3+ in a 0.01% ethanol in 50 mM HEPES buffer medium by fluorimetric sensing. The structure of the probe, H 2 bpet involves existence of keto−–enol tautomerism. Single crystal X-ray diffraction study reveals prevalence of keto form of H 2 bpet in the solid state. The binding properties of H 2 bpet with Al 3+ was thoroughly investigated by fluorescence spectroscopy and ESI–MS analyses. The binding of Al 3+ to the probe H 2 bpet , induces distinct 1 H and 13 C NMR shifts in favour of H 2 bpet (keto form):Al 3+ aggregate. The sensing mechanism of H 2 bpet toward Al 3+ and composition of H 2 bpet:Al 3+ aggregate was proposed and established by DFT/TDDFT calculations. Its application in fluorescent imaging in HepG2 cells was also tested. This report demonstrates an advancement in detection of Al 3+ with the introduction of a new benzophenone containing Schiff base chemosensor.
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- 2017
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40. A rhodamine based fluorescent trivalent sensor (Fe3+, Al3+, Cr3+) with potential applications for live cell imaging and combinational logic circuits and memory devices
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Rahul Bhowmick, Mahammad Ali, Abu Saleh Musha Islam, Keya Chaudhuri, Rabiul Alam, and Atul Katarkar
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010405 organic chemistry ,Metal ions in aqueous solution ,Analytical chemistry ,General Chemistry ,010402 general chemistry ,01 natural sciences ,Fluorescence ,Catalysis ,0104 chemical sciences ,Rhodamine ,Fluorescence intensity ,chemistry.chemical_compound ,chemistry ,Live cell imaging ,Materials Chemistry ,Naked eye ,Methanol ,Electronic circuit - Abstract
A sensor (HL5) based on rhodamine 6G–en and 3-(3,5-dimethyl-pyrazol-1-ylmethyl)-2-hydroxy-5-methyl-benzaldehyde (HL4) has been developed for a highly sensitive and selective CHEF based recognition of trivalent metal ions M3+ (M = Al, Fe and Cr) over mono- and di-valent and other biologically abundant trivalent metal ions with prominent enhancement in absorption and emission intensities. A large enhancement of fluorescence intensities for Fe3+ (21 fold), Al3+ (14 fold) and Cr3+ (10 fold) was observed upon addition of 1.8 equivalents of these metals into the probe in methanol/H2O (1 : 1, v/v, pH 7.2) with the possibility of naked eye detection. The corresponding Kf values were evaluated to be 6.7 × 104 M−1 (Fe3+); 8.2 × 104 M−1 (Al3+) and 6.0 × 104 M−1 (Cr3+). The quantum yields of HL5 and [HL5–Fe3+] and [HL5–Cr3+] and [HL5–Al3+] complexes in methanol/H2O (1 : 1, v/v, pH 7.2) are found to be 0.013, 0.290, 0.120, and 0.158, respectively, using rhodamine-6G as the standard. The LOD for Fe3+, Al3+ and Cr3+ were determined by 3σ methods with values 0.29, 0.34 and 0.31 μM, respectively. An arsenate ion snatches Al from the Al–HL5 complex and quenches its fluorescence via its ring closed spirolactam form. Advanced level molecular logic devices using the inputs 2 and 4 and memory devices, have been constructed. The low cytotoxicity and large enhancement in fluorescence intensity of HL5 upon complexation with M3+ metal ions make the probe suitable for bio-imaging of M3+ (M = Al, Fe and Cr) in living cells and native cellular iron pools.
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- 2017
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41. A rhodamine based turn-on chemosensor for Fe3+ in aqueous medium and interactions of its Fe3+ complex with HSA
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Arindam Giri, Mahammad Ali, Abu Saleh Musha Islam, Atul Katarkar, and Rahul Bhowmick
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inorganic chemicals ,Circular dichroism ,010405 organic chemistry ,Chemistry ,Metal ions in aqueous solution ,Intercalation (chemistry) ,Analytical chemistry ,General Chemistry ,010402 general chemistry ,01 natural sciences ,Fluorescence ,Catalysis ,0104 chemical sciences ,Turn (biochemistry) ,Rhodamine ,chemistry.chemical_compound ,Crystallography ,Stability constants of complexes ,Materials Chemistry ,DNA - Abstract
A novel di-coordinating rhodamine-based chemosensor, HL with NO donor atoms, selectively and rapidly recognizes Fe3+ in the presence of all biologically relevant as well as toxic metal ions and numerous anions and also with other reactive oxygen and nitrogen species. It exhibits a lower detection limit (0.17 μM) and comparatively higher formation constant (Kf = 1.72 × 104 M−1). The DNA-binding properties of [LFe(NO3)2]+ complex have been comprehensively studied by using UV-Vis, fluorescence, and optical melting studies and circular dichroism, which clearly indicate that [LFe(NO3)2]+ interacts with DNA via a groove binding mode. In particular, competition experiments with Hoechst and DAPI constitute firm evidence for this binding mode, and clearly rule out intercalation. The negative ΔG0 and positive ΔS0 values obtained from a calorimetric technique confirm the spontaneity of the binding of [LFe(NO3)2]+ with DNA. The resulting [LFe(NO3)2]+/DNA composite material could be a valuable candidate for future photonics and/or biological applications.
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- 2017
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42. Neo-tanshinlactone D-ring modified novel analogues induce apoptosis in human breast cancer cell via DNA damage
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Atul Katarkar, Keya Chaudhuri, Sunil Kumar Killi, Biswadip Banerji, Yellaiah Tangella, Satadru Chatterjee, and Chandraday Prodhan
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0301 basic medicine ,DNA damage ,Clinical Biochemistry ,Pharmaceutical Science ,Antineoplastic Agents ,Apoptosis ,Retinoblastoma Protein ,Biochemistry ,Histone Deacetylases ,Histones ,Structure-Activity Relationship ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Breast cancer ,Cell Line, Tumor ,Drug Discovery ,medicine ,Humans ,DNA Breaks, Double-Stranded ,Furans ,skin and connective tissue diseases ,Molecular Biology ,IC50 ,Membrane Potential, Mitochondrial ,Natural product ,Molecular Structure ,Chemistry ,Organic Chemistry ,medicine.disease ,Molecular biology ,Molecular Docking Simulation ,030104 developmental biology ,Pyrones ,SKBR3 ,030220 oncology & carcinogenesis ,Cancer cell ,Molecular Medicine ,E2F1 Transcription Factor ,DNA - Abstract
Neo-tanshinlactone (NTL) a natural product is known for its specificity and selectivity towards the breast cancer cells. By NTL D-ring modification approach, 13 new analogues were synthesized (1A-1M). Among them 1J showed the best anticancer activity in MCF-7 (ER+, PR+/-, HER2-), SKBR3 (ER-, PR-, HER2+) and MDA-MB-231 (ER-, PR-, HER2-) cells lines with IC50 value 11.98nM, 23.71nM, and 62.91nM respectively. 1J showed minor grove binding interaction with DNA at AT-rich region and induced DNA double strand breaks (DDSBs). This had triggered several key molecular events involving, activation of ATM, Chk2 and p53, reduction in mitochondrial potential (Δψm) leading to caspase-3 and PARP cleavage mediated apoptosis. These results along with other biochemical studies strongly suggest that novel NTL analogue 1J caused DNA cleavage mediated apoptosis in the breast cancer cells and this may serve as potential lead for future breast cancer treatment.
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- 2017
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43. 6-Gingerol inhibits Vibrio cholerae-induced proinflammatory cytokines in intestinal epithelial cells via modulation of NF-κB
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Atul Katarkar, Keya Chaudhuri, Pallashri Saha, Aritra Bhattacharyya, and Bornita Das
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0301 basic medicine ,Time Factors ,p38 mitogen-activated protein kinases ,030106 microbiology ,Anti-Inflammatory Agents ,Catechols ,Down-Regulation ,Pharmaceutical Science ,medicine.disease_cause ,Microbiology ,Proinflammatory cytokine ,03 medical and health sciences ,Multiplicity of infection ,NF-KappaB Inhibitor alpha ,Downregulation and upregulation ,Vibrionaceae ,Drug Discovery ,medicine ,Humans ,Viability assay ,Intestinal Mucosa ,Phosphorylation ,Vibrio cholerae ,Pharmacology ,biology ,NF-kappa B ,Transcription Factor RelA ,Epithelial Cells ,Hep G2 Cells ,General Medicine ,NFKB1 ,biology.organism_classification ,Enzyme Activation ,Intestines ,030104 developmental biology ,Complementary and alternative medicine ,Host-Pathogen Interactions ,Cytokines ,Molecular Medicine ,Fatty Alcohols ,Inflammation Mediators ,Mitogen-Activated Protein Kinases ,Signal Transduction - Abstract
Context The effect of 6-gingerol (6G), the bioactive component of Zingiber officinale Roscoe (Zingiberaceae), in the reduction of Vibrio cholerae (Vibrionaceae)-induced inflammation has not yet been reported. Materials and methods Cell viability assay was performed to determine the working concentration of 6G. Elisa and RT-PCR were performed with Int 407 cells treated with 50 μM 6G and 100 multiplicity of infection (MOI) V. cholerae for 0, 2, 3, 3.5, 6 and 8 h to determine the concentration of IL-8, IL-6, IL-1α and IL-1β in both protein and RNA levels. Furthermore, the effect of 50 μM 6G on upstream MAP-kinases and NF-κB signalling pathways was evaluated at 0, 10, 15, 30, 60 and 90 min. Results The effective dose (ED50) value of 6G was found to be 50 μM as determined by cell viability assay. Pre-treatment with 50 μM 6G reduced V. cholerae infection-triggered levels of IL-8, IL-6, IL-1α and IL-1β by 3.2-fold in the protein level and two-fold in the RNA level at 3.5 h. The levels of MAP-kinases signalling molecules like p38 and ERK1/2 were also reduced by two- and three-fold, respectively, after 30 min of treatment. Additionally, there was an increase in phosphorylated IκBα and down-regulation of p65 resulting in down-regulation of NF-κB pathway. Conclusion Our results showed that 6G could modulate the anti-inflammatory responses triggered by V. cholerae-induced infection in intestinal epithelial cells by modulating NF-κB pathway.
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- 2016
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44. A novel 8-hydroxyquinoline-pyrazole based highly sensitive and selective Al(<scp>iii</scp>) sensor in a purely aqueous medium with intracellular application: experimental and computational studies
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Keya Chaudhuri, Atul Katarkar, Abu Saleh Musha Islam, Rahul Bhowmick, Hasan Mohammad, and Mahammad Ali
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010405 organic chemistry ,Chemistry ,Analytical chemistry ,8-Hydroxyquinoline ,General Chemistry ,Time-dependent density functional theory ,Pyrazole ,010402 general chemistry ,01 natural sciences ,Fluorescence ,Catalysis ,0104 chemical sciences ,Highly sensitive ,chemistry.chemical_compound ,Materials Chemistry ,Titration ,Stoichiometry ,Intracellular - Abstract
A new 8-hydroxyquinoline-pyrazole based highly sensitive and selective Al3+ sensor, 8Q-NH-Pyz (H2L3), was found to exhibit a turn-on fluorescence enhancement (FE) as high as 157 fold with Kd = (1.76 ± 0.06) × 10−5 M. The 1:1 binding stoichiometry was revealed from the linear fit of (Fmax − F0)/(F − F0) vs. 1/[Al3+] of the fluorescence titration data which was further substantiated by Job's method and HRMS studies. The LOD determined by 3σ methods was found to be 4.29 nM and quantum yields were determined to be 0.002 and 0.28 for the ligand and its Al3+ complex, respectively. The tentative coordination environment in the [Al(L3)(H2O)]+ complex was delineated by DFT calculations. TDDFT calculations reveal spectral features comparable to the experimental ones. This constitutes the first report on the fluorescence sensing of Al3+ and hence F− in a purely aqueous medium.
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- 2016
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45. A thiosemicarbazone based chemo and fluorogenic sensor for Zn2+with CHEF and ESIPT behaviour: computational studies and cell imaging application
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Kalyan Kumar Das, Mahammad Ali, Keya Chaudhuri, Rabiul Alam, Tarun Mistri, Atul Katarkar, and Rahul Bhowmick
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Isosbestic point ,010405 organic chemistry ,General Chemical Engineering ,Analytical chemistry ,General Chemistry ,010402 general chemistry ,01 natural sciences ,Fluorescence ,Enol ,0104 chemical sciences ,Absorbance ,chemistry.chemical_compound ,chemistry ,Absorption band ,Stability constants of complexes ,Ground state ,Semicarbazone - Abstract
We report herein the development of a novel, diformyl-p-cresol (DFC)–thiosemicarbazide (TS) based sensor (DFC–TS) that selectively and sensitively recognizes Zn2+ by both UV-Vis and fluorescence methods. The gradual addition of Zn2+ to a solution of the ligand developed a new absorption band at 430 nm, while the bands at 370 and 316 nm gradually decrease generating one well defined isosbestic point at 390 nm exhibiting ∼17 fold turn-on fluorescent enhancement (FE). When we plot absorbance (at 430 nm) vs. [Zn2+] there is a gradual increase in absorption with [Zn2+], becoming saturated at ∼1 equivalent of Zn2+ and then again it increases with the increase in [Zn2+] and ultimately becomes saturated at ∼2 equivalents of added Zn2+. This clearly demonstrates that the Zn2+ binding event to the ligand occurs in two steps, one at a time. Non-linear least-squares computer-fitting of these data gives the parameters: K′f1 = (9.70 ± 5.51) × 105 M−1, n = (1.28 ± 0.05) for the first step and K′f2 = (1.11 ± 0.65) × 105 M−1 and n = (1.01 ± 0.06) for the second step. So far, this study provides the opportunity where we have successfully, for the first time, determined the stepwise formation constants; though they have values of the same order of magnitude. The ground state geometries of DFC–TS, both enol and keto forms and [Zn(DFC–TS)(OAc)], [Zn(DFC–TS)(OAc)]−, and [Zn2(DFC–TS)(OAc)2] were optimized using the Gaussian-03 suit program and bond distances of all species are in reasonable agreement with the reported values.
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- 2016
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46. ESIPT blocked CHEF based differential dual sensor for Zn2+ and Al3+in a pseudo-aqueous medium with intracellular bio-imaging applications and computational studies
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Mahammad Ali, Atul Katarkar, Keya Chaudhuri, Rabiul Alam, Rahul Bhowmick, and Tarun Mistri
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Fluorescence-lifetime imaging microscopy ,010405 organic chemistry ,Chemistry ,Ligand ,General Chemical Engineering ,Metal ions in aqueous solution ,General Chemistry ,010402 general chemistry ,Photochemistry ,01 natural sciences ,Fluorescence ,0104 chemical sciences ,Ion ,Excited state ,Selectivity ,Isomerization - Abstract
A novel 3-hydroxymethyl-5-methylsalicylaldehydenaphthyl-hydrazone (H3SAL-NH) exhibits ESIPT behaviour due to proton transfer from the phenolic OH group to the azomethine N atom in the excited state. Through this ESIPT behaviour together with cis–trans isomerization of the azomethine group, the free ligand becomes very weakly fluorescent. However, in the presence of Zn2+ and Al3+ the ESIPT and isomerization are blocked due to coordination to the metal ions thereby causing turn on fluorescence for Al3+ and Zn2+. Moreover, Zn2+ can easily be displaced from the [H2SAL-NH–Zn2+] complex by Al3+ thereby enhancing the differential selectivity for Al3+ over Zn2+. This probe was found to be selective for Al3+ over Zn2+ in the presence of Na2H2EDTA, under both intra- and extracellular conditions. The LODs for Zn2+ and Al3+ were determined by 3σ methods and were found to be 3.1 nM and 0.92 nM, respectively. Thus, the differentially selective turn-on fluorescence behaviour of H3SAL-NH for Zn2+ and Al3+ is based on the combined blocking of ESIPT and CN isomerization, and a chelation-enhanced fluorescence (CHEF) effect. The coordination modes of the complexes were investigated through spectroscopic and computational studies. H3SAL-NH also exhibits good photostability and very low cytotoxicity and is useful for fluorescence imaging of Zn2+ and Al3+ ions in live HepG2 cells.
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- 2016
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47. A rhodamine embedded bio-compatible smart molecule mimicking a combinatorial logic circuit and ‘key-pad lock’ memory device for defending against information risk
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Mahammad Ali, Keya Chaudhuri, Rabiul Alam, Atul Katarkar, Rahul Bhowmick, and Tarun Mistri
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Combinational logic ,Record locking ,Fluorophore ,010405 organic chemistry ,Chemistry ,Nanotechnology ,General Chemistry ,010402 general chemistry ,01 natural sciences ,Fluorescence ,Catalysis ,0104 chemical sciences ,Rhodamine ,chemistry.chemical_compound ,Materials Chemistry ,Key (cryptography) ,Moiety ,Molecule - Abstract
Organic molecules with the possibility of logic operations are highly useful building blocks for the development of molecule-based “intelligent” devices for information processing applications. We have designed herein a very simple bio-friendly chemosensor (LC) equipped with a rhodamine fluorophore moiety. This probe showed a chromo-fluorescence response profile for Al3+ but a colorimetric response for Cu2+ metal. The absorption responses of LC caused by these metal ions along with the “OFF–ON–OFF” fluorescence behavior of an LC–Al3+ complex towards EDTA were employed for the development of a three-input and one output combinatorial molecular system. Interactions of the mentioned metal ions with LC in controlled sequential experiments gave fluorescence responses, enabling us to fabricate a ‘key-pad-logic’ function. So, a single molecular system performing such multiple ‘Boolean’ operations not only simplifies the complexity of a chemical driven ‘Intelligence’ device but also enriches the security of such a device against information invasion due to the sequence controlled sensor–analyte interactions and may find potential applications in biocompatible molecular logic platforms.
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- 2016
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48. A differentially selective probe for trivalent chemosensor upon single excitation with cell imaging application: potential applications in combinatorial logic circuit and memory devices
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Rabiul Alam, Mahammad Ali, Dipankar Das, and Atul Katarkar
- Subjects
Chromium ,Benzylamines ,Materials science ,Cell Survival ,Metal ions in aqueous solution ,Analytical chemistry ,02 engineering and technology ,Biosensing Techniques ,010402 general chemistry ,Crystallography, X-Ray ,01 natural sciences ,Ferric Compounds ,Rhodamine ,chemistry.chemical_compound ,Limit of Detection ,Humans ,Physical and Theoretical Chemistry ,Fluorescent Dyes ,chemistry.chemical_classification ,Ions ,Rhodamines ,Optical Imaging ,Hep G2 Cells ,021001 nanoscience & nanotechnology ,Single excitation ,Fluorescence ,0104 chemical sciences ,Fluorescence intensity ,Hydrocarbon ,chemistry ,Logic gate ,Naked eye ,0210 nano-technology ,Aluminum - Abstract
A new rhodamine 6G-benzylamine-based sensor (L1), having only hydrocarbon skeletons in the extended part, was synthesized and characterized by single-crystal X-ray crystallographic study. It exhibited excellent selective and sensitive recognition of trivalent metal ions M3+ (M = Fe, Al and Cr) over mono- and di-valent and other trivalent metal ions. A large enhancement of the fluorescence intensity for Fe3+ (41-fold), Al3+ (31-fold) and Cr3+ (26-fold) was observed upon the addition of 3.0 equivalent of these metal ions into the probe in H2O/CH3CN (4 : 1, v/v, pH 7.2) with naked eye detection. The corresponding Kf values were evaluated to be 9.4 × 103 M−1 (Fe3+), 1.34 × 104 M−1 (Al3+) and 8.7 × 103 M−1 (Cr3+). Quantum yields of the L1, [L1–Fe3+], [L1–Al3+] and [L1–Cr3+] complexes in H2O/CH3CN (4 : 1, v/v, pH 7.2) were found to be 0.012, 0.489, 0.376 and 0.310, respectively, using rhodamine-6G as standard. LODs for Fe3+, Al3+ and Cr3+ were determined by 3σ methods and found to be 1.28, 1.34 and 2.28 μM, respectively. Cyanide ion scavenged Fe3+ from the [Fe3+–L1] complex and quenched its fluorescence via its ring-closed spirolactam form. Advanced level molecular logic devices using different inputs (2 and 4 inputs) as advanced level logic gates and memory devices were constructed. The large enhancement in fluorescence emission of L1 upon complexation with M3+ metal ions makes the probe suitable for the bio-imaging of M3+ (M = Fe, Al and Cr) in living cells.
- Published
- 2018
49. Nitric Oxide Sensing through 1,2,3,4-Oxatriazole Formation from Acylhydrazide: A Kinetic Study
- Author
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Atul Katarkar, Rahul Bhowmick, Bidhan Chandra Garain, Abu Saleh Musha Islam, and Mahammad Ali
- Subjects
chemistry.chemical_classification ,Carboxylic acid ,Biomolecule ,Organic Chemistry ,Kinetics ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Hydrazide ,Ring (chemistry) ,01 natural sciences ,Combinatorial chemistry ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Moiety ,Azide ,0210 nano-technology ,Molecular probe - Abstract
A simple molecular probe displays highly selective turn-on response toward NO by the unprecedented NO-induced formation of a 1,2,3,4-oxatriazole ring exhibiting no interference from various endogenous biomolecules including DHA, AA, etc. Kinetics of the reactions between NO and the probe provide a mechanistic insight into the formation of 1,2,3,4-oxatriazole which showed that, though initially 1,2,3,4-oxatriazole is formed and extractable in solid form, it exists in equilibrium with the ring opened azide form which ultimately hydrolyzed and converted to carboxylic acid and nitrate. The reaction displays second-order dependence on [NO] and first-order on [Probe]. The probe is water-soluble, cell permeable, and noncytotoxic and appropriates for live cell imaging. This constitutes the first report where there is a direct evidence of NO-induced ring closing reaction of an acyl hydrazide moiety leading to the formation of 1,2,3,4-oxatriazole.
- Published
- 2018
50. A rhodamine-based turn-on nitric oxide sensor in aqueous medium with endogenous cell imaging: an unusual formation of nitrosohydroxylamine
- Author
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Rabiul Alam, Atul Katarkar, Mihir Sasmal, Mahammad Ali, and Abu Saleh Musha Islam
- Subjects
Fluorophore ,Cell Membrane Permeability ,Inorganic chemistry ,010402 general chemistry ,Hydroxylamines ,Nitric Oxide ,01 natural sciences ,Biochemistry ,Fluorescence ,Rhodamine ,Benzaldehyde ,chemistry.chemical_compound ,Limit of Detection ,Animals ,Physical and Theoretical Chemistry ,Zebrafish ,Detection limit ,Aqueous solution ,Cell Death ,010405 organic chemistry ,Rhodamines ,Organic Chemistry ,Water ,0104 chemical sciences ,Molecular Imaging ,chemistry ,Benzaldehydes ,Titration ,Naked eye - Abstract
A new sensor (L3) based on Rhodamine-B-en (2) and 2-(pyridin-2-ylmethoxy)benzaldehyde (1) has been developed for highly sensitive and selective recognition of NO in purely aqueous medium where the reaction of NO with the fluorophore leads to an unusual formation of nitrosohydroxylamine with the selective opening of the spirolactam ring over different cations, anions, amino-acids and other biological species with prominent enhancement in absorption and emission intensities. A large enhancement of fluorescence intensity for NO (11 fold) was observed upon addition of 3 equivalents of NO into the sensor in aqueous HEPES buffer (20 mM) at pH 7.20, μ = 0.05 M NaCl with naked eye detection. The corresponding Kf value was evaluated to be (7.55 ± 2.04) × 104 M-1 from the fluorescence titration plot. Quantum yields of L3 and the [L3 + NO] compound are found to be 0.07 and 0.77, respectively, using Rhodamine-6G as the standard. The LOD for NO was determined by the 3σ method and found to be 83.4 nM. The L3 sensor has low cytotoxicity, and is cell permeable and suitable for in vitro NO sensing. The in vivo compatibility of the sensor was also checked on zebrafish.
- Published
- 2018
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