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Pharmaceutical industry requires reliable and less time consuming procedures for the quality control analysis of raw materials and finished products. The study was focused on thin layer chromatography (TLC), gas chromatography (GC) and matrix free material enhanced laser desorption ionization time of flight mass spectrometry (mf-MELDI-MS). Standards and microwave assisted water extracts from Achillea milleffolium (herb), Althaea officinalis (roots), Equisetum arvense (herb), Juglans regia (leaves), Matricaria chamomella (flowers) and Taraxacum officinale (herb) were the samples used for this study. The presence of mono- (fructose and glucose) and disaccharide (sucrose) in all the plants under study was proved through the TLC analysis. These results were confirmed by the Mf-MELDI-MS experiments. Gas chromatography coupled to mass spectrometry (GC-MS) confirmed the data obtained via TLC and mf-MELDI-MS, delivering additionally quantified values, but needed a long time. A carbohydrate of higher oligomerization degree could not be found. Among the six plants, glucose was found in highest concentration in Taraxacum officinale. Fructose is present in appreciable quantity in Matricaria chamomella while Althaea officinalis has the highest amount of sucrose among the plants under study. [ABSTRACT FROM AUTHOR]