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2. The ocean sampling day consortium

Author

Kopf, A., Bicak, M., Kottmann, R., Schnetzer, J., Kostadinov, I., Lehmann, K., Fernàndez-Guerra, A., Jeanthon, C., Rahav, E., Ullrich, M., Wichels, A., Gerdts, G., Polymenakou, P., Kotoulas, G., Siam, R., Abdallah, R.Z., Sonnenschein, E., Cariou, T., O'Gara, F., Jackson, S., Orlic, S., Steinke, M., Busch, J., Duarte, B., Caçador, I., Canning-Clode, J., Marteinsson, V., Reynisson, E., Loureiro, C.M., Luna, G.M., Quero, G.M., Löscher, C.R., Kremp, A., DeLorenzo, M.E., Øvreås, L., Tolman, J., LaRoche, J., Penna, A., Frischer, M., Davis, T., Barker, K., Meyer, C.P., Ramos, S., Magalhães, C., Jude-Lemeilleur, F., Aguirre-Macedo, M.L., Wang, S., Poulton, N., Jones, S., Collin, R., Fuhrman, J.A., Conan, P., Alonso, C., Stambler, N., Goodwin, K., Yakimov, M.M., Baltar, F., Bodrossy, L., Van de Kamp, J., Frampton, D.M.F., Ostrowski, M., Van Ruth, P., Malthouse, P., Claus, S., Deneudt, K., Mortelmans, J., Pitois, S., Wallom, D., Salter, I., Costa, R., Schroeder, D.C., Kandil, M.M., Amaral, V., Biancalana, F., Santana, R., Pedrotti, M.L., Yoshida, T., Ogata, H., Ingleton, T., Munnik, K., Rodriguez-Ezpeleta, N., Berteaux-Lecellier, V., Wecker, P., Cancio, I., Vaulot, D., Bienhold, C., Ghazal, H., Chaouni, B., Essayer, S., Ettamimi, S., Zaid, E.H., Boukhatem, N., Bouali, A., Chahboune, R., Barrijal, S., Timinouni, M., El Otmani, F., Bennani, M., Mea, M., Todorova, N., Karamfilov, V., ten Hoopen, P., Cochrane, G., L'Haridon, S., Bizsel, K.C., Vezzi, A., Lauro, F.M., Martin, P., Jensen, R.M., Hinks, J., Gebbels, S., Rosselli, R., De Pascale, F., Schiavon, R., dos Santos, A., Villar, E., Pesant, S., Cataletto, B., Malfatti, F., Edirisinghe, R., Herrera Silveira, J.A., Barbier, M., Turk, V., Tinta, T., Fuller, W.J., Salihoglu, I., Serakinci, N., Ergoren, M.C., Bresnan, E., Iriberri, J., Nyhus, P.A.F., Bente, E., Karlsen, H.E., Golyshin, P.N., Gasol, J.M., Moncheva, S., Dzhembekova, N., Johnson, Z., Sinigalliano, C.D., Gidley, M.L., Zingone, A., Danovaro, R., Tsiamis, G., Clark, M.S., Costa, A.C., El Bour, M., Martins, A.M., Collins, R.E., Ducluzeau, A.-L., Martinez, J., Costello, M.J., Amaral-Zettler, L.A., Gilbert, J.A., Davies, N., Field, D., and Glóckner, F.O.

Subjects
Standards, Bacteria, Marine, Biodiversity
Abstract

Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world’s oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized microbial data set in a single day. This will be achievable only through the coordinated efforts of an Ocean Sampling Day Consortium, supportive partnerships and networks between sites. This commentary outlines the establishment, function and aims of the Consortium and describes our vision for a sustainable study of marine microbial communities and their embedded functional traits.

Published
2015

3. A MSFD complementary approach for the assessment of pressures, knowledge and data gaps in Southern European Seas: The PERSEUS experience

Author

Crise, A., Kaberi, H., Ruiz, J., Zatsepin, A., Arashkevich, E., Giani, M., Karageorgis, A.P., Prieto, L., Pantazi, M., Gonzalez-Fernandez, D., Ribera d’Alcalà, M., Tornero, V., Vassilopoulou, V., Durrieu de Madron, X., Guieu, C., Puig, P., Zenetos, A., Andral, B., Angel, D., Altukhov, D., Ayata, S.D., Aktan, Y., Balcıoğlu, E., Benedetti, F., Bouchoucha, M., Buia, M.-C., Cadiou, J.-F., Canals, M., Chakroun, M., Christou, E., Christidis, M.G., Civitarese, G., Coatu, V., Corsini-Foka, M., Cozzi, S., Deidun, A., Dell’Aquila, A., Dogrammatzi, A., Dumitrache, C., Edelist, D., Ettahiri, O., Fonda-Umani, S., Gana, S., Galgani, F., Gasparini, S., Giannakourou, A., Gomoiu, M.-T., Gubanova, A., Gücü, A.-C., Gurses, Ozgur, Hanke, G., Hatzianestis, I., Herut, B., Hone, R., Huertas, E., Irisson, J.-O., İşinibilir, M., Jimenez, J.A., Kalogirou, S., Kapiris, K., Karamfilov, V., Kavadas, S., Keskin, Ç., Kideyş, A.E., Kocak, M., Kondylatos, G., Kontogiannis, C., Kosyan, R., Koubbi, P., Kušpilić, G., La Ferla, R., Langone, L., Laroche, S., Lazar, L., Lefkaditou, E., Lemeshko, I.E., Machias, A., Malej, A., Mazzocchi, M.-G., Medinets, V., Mihalopoulos, N., Miserocchi, S., Moncheva, S., Mukhanov, V., Oaie, G., Oros, A., Öztürk, A.A., Öztürk, B., Panayotova, M., Prospathopoulos, A., Radu, G., Raykov, V., Reglero, P., Reygondeau, G., Rougeron, N., Salihoglu, B., Sanchez-Vidal, A., Sannino, G., Santinelli, C., Secrieru, D., Shapiro, G., Simboura, N., Shiganova, T., Sprovieri, M., Stefanova, K., Streftaris, N., Tirelli, V., Tom, M., Topaloğlu, B., Topçu, N.E., Tsagarakis, K., Tsangaris, C., Tserpes, G., Tuğrul, S., Uysal, Z., Vasile, D., Violaki, K., Xu, J., Yüksek, A., Papathanassiou, E., Crise, A., Kaberi, H., Ruiz, J., Zatsepin, A., Arashkevich, E., Giani, M., Karageorgis, A.P., Prieto, L., Pantazi, M., Gonzalez-Fernandez, D., Ribera d’Alcalà, M., Tornero, V., Vassilopoulou, V., Durrieu de Madron, X., Guieu, C., Puig, P., Zenetos, A., Andral, B., Angel, D., Altukhov, D., Ayata, S.D., Aktan, Y., Balcıoğlu, E., Benedetti, F., Bouchoucha, M., Buia, M.-C., Cadiou, J.-F., Canals, M., Chakroun, M., Christou, E., Christidis, M.G., Civitarese, G., Coatu, V., Corsini-Foka, M., Cozzi, S., Deidun, A., Dell’Aquila, A., Dogrammatzi, A., Dumitrache, C., Edelist, D., Ettahiri, O., Fonda-Umani, S., Gana, S., Galgani, F., Gasparini, S., Giannakourou, A., Gomoiu, M.-T., Gubanova, A., Gücü, A.-C., Gurses, Ozgur, Hanke, G., Hatzianestis, I., Herut, B., Hone, R., Huertas, E., Irisson, J.-O., İşinibilir, M., Jimenez, J.A., Kalogirou, S., Kapiris, K., Karamfilov, V., Kavadas, S., Keskin, Ç., Kideyş, A.E., Kocak, M., Kondylatos, G., Kontogiannis, C., Kosyan, R., Koubbi, P., Kušpilić, G., La Ferla, R., Langone, L., Laroche, S., Lazar, L., Lefkaditou, E., Lemeshko, I.E., Machias, A., Malej, A., Mazzocchi, M.-G., Medinets, V., Mihalopoulos, N., Miserocchi, S., Moncheva, S., Mukhanov, V., Oaie, G., Oros, A., Öztürk, A.A., Öztürk, B., Panayotova, M., Prospathopoulos, A., Radu, G., Raykov, V., Reglero, P., Reygondeau, G., Rougeron, N., Salihoglu, B., Sanchez-Vidal, A., Sannino, G., Santinelli, C., Secrieru, D., Shapiro, G., Simboura, N., Shiganova, T., Sprovieri, M., Stefanova, K., Streftaris, N., Tirelli, V., Tom, M., Topaloğlu, B., Topçu, N.E., Tsagarakis, K., Tsangaris, C., Tserpes, G., Tuğrul, S., Uysal, Z., Vasile, D., Violaki, K., Xu, J., Yüksek, A., and Papathanassiou, E.

Published
2015

5. A MSFD complementary approach for the assessment of pressures, knowledge and data gaps in Southern European Seas: The PERSEUS experience

Author

Crise, A., primary, Kaberi, H., additional, Ruiz, J., additional, Zatsepin, A., additional, Arashkevich, E., additional, Giani, M., additional, Karageorgis, A.P., additional, Prieto, L., additional, Pantazi, M., additional, Gonzalez-Fernandez, D., additional, Ribera d’Alcalà, M., additional, Tornero, V., additional, Vassilopoulou, V., additional, Durrieu de Madron, X., additional, Guieu, C., additional, Puig, P., additional, Zenetos, A., additional, Andral, B., additional, Angel, D., additional, Altukhov, D., additional, Ayata, S.D., additional, Aktan, Y., additional, Balcıoğlu, E., additional, Benedetti, F., additional, Bouchoucha, M., additional, Buia, M.-C., additional, Cadiou, J.-F., additional, Canals, M., additional, Chakroun, M., additional, Christou, E., additional, Christidis, M.G., additional, Civitarese, G., additional, Coatu, V., additional, Corsini-Foka, M., additional, Cozzi, S., additional, Deidun, A., additional, Dell’Aquila, A., additional, Dogrammatzi, A., additional, Dumitrache, C., additional, Edelist, D., additional, Ettahiri, O., additional, Fonda-Umani, S., additional, Gana, S., additional, Galgani, F., additional, Gasparini, S., additional, Giannakourou, A., additional, Gomoiu, M.-T., additional, Gubanova, A., additional, Gücü, A.-C., additional, Gürses, Ö., additional, Hanke, G., additional, Hatzianestis, I., additional, Herut, B., additional, Hone, R., additional, Huertas, E., additional, Irisson, J.-O., additional, İşinibilir, M., additional, Jimenez, J.A., additional, Kalogirou, S., additional, Kapiris, K., additional, Karamfilov, V., additional, Kavadas, S., additional, Keskin, Ç., additional, Kideyş, A.E., additional, Kocak, M., additional, Kondylatos, G., additional, Kontogiannis, C., additional, Kosyan, R., additional, Koubbi, P., additional, Kušpilić, G., additional, La Ferla, R., additional, Langone, L., additional, Laroche, S., additional, Lazar, L., additional, Lefkaditou, E., additional, Lemeshko, I.E., additional, Machias, A., additional, Malej, A., additional, Mazzocchi, M.-G., additional, Medinets, V., additional, Mihalopoulos, N., additional, Miserocchi, S., additional, Moncheva, S., additional, Mukhanov, V., additional, Oaie, G., additional, Oros, A., additional, Öztürk, A.A., additional, Öztürk, B., additional, Panayotova, M., additional, Prospathopoulos, A., additional, Radu, G., additional, Raykov, V., additional, Reglero, P., additional, Reygondeau, G., additional, Rougeron, N., additional, Salihoglu, B., additional, Sanchez-Vidal, A., additional, Sannino, G., additional, Santinelli, C., additional, Secrieru, D., additional, Shapiro, G., additional, Simboura, N., additional, Shiganova, T., additional, Sprovieri, M., additional, Stefanova, K., additional, Streftaris, N., additional, Tirelli, V., additional, Tom, M., additional, Topaloğlu, B., additional, Topçu, N.E., additional, Tsagarakis, K., additional, Tsangaris, C., additional, Tserpes, G., additional, Tuğrul, S., additional, Uysal, Z., additional, Vasile, D., additional, Violaki, K., additional, Xu, J., additional, Yüksek, A., additional, and Papathanassiou, E., additional

Published
2015
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9. A MSFD complementary approach for the assessment of pressures, knowledge and data gaps in Southern European Seas: the PERSEUS experience

Author

Esra Billur Balcıoğlu, Ozgur Gurses, E. Papathanassiou, C. Dumitrache, O. Ettahiri, Gianmaria Sannino, Marina Panayotova, Çetin Keskin, Stéphane Gasparini, Kalliopi Violaki, M. Ribera d'Alcalà, Argyro Zenetos, Gerasimos Kondylatos, Giuseppe Civitarese, Baris Salihoglu, N. Streftaris, Georg Hanke, Stefano Miserocchi, Maria Grazia Mazzocchi, R. Kosyan, Pere Puig, Catherine Tsangaris, Vladimir A. Mukhanov, Alessandro Dell'Aquila, Slim Gana, José A. Jiménez, Maria Cristina Buia, Marc Bouchoucha, Athanassios Machias, Aristomenis P. Karageorgis, E. Huertas, Alessandro Crise, Chiara Santinelli, Miquel Canals, M.G. Christidis, D. Vasile, M. Tom, Sakina-Dorothée Ayata, Luminita Lazar, Stefanos Kavadas, Jean-Francois Cadiou, Bruno Andral, Laura Prieto, Ayaka Amaha Öztürk, Valentina Tirelli, José Luis Ruiz, K. Tsagarakis, C. Kontogiannis, R. La Ferla, G. Tserpes, Maria Corsini-Foka, Aristides Prospathopoulos, Ahmet E. Kideys, Vassiliki Vassilopoulou, Anna Sanchez-Vidal, Jean-Olivier Irisson, Elena Arashkevich, Volodymyr I. Medinets, Daniel González-Fernández, Melek Isinibilir, Kostas Kapiris, Ali Cemal Gücü, G. Radu, Nomiki Simboura, Dor Edelist, A. Dogrammatzi, Mustafa Koçak, V. Tornero, Violin Raykov, Stefanos Kalogirou, Alenka Malej, Kremena Stefanova, Dan Secrieru, R. Hone, Alan Deidun, Valentina Coatu, Cécile Guieu, Epaminondas Christou, Jingjing Xu, Ioannis Hatzianestis, Patricia Reglero, N. Rougeron, Tamara A. Shiganova, Nikos Mihalopoulos, Grozdan Kušpilić, Andra Oros, Fabio Benedetti, Gabriel Reygondeau, E. Lefkaditou, A. Zatsepin, I.E. Lemeshko, Süleyman Tuğrul, Bayram Öztürk, Helen Kaberi, Gheorghe Oaie, Antonia Giannakourou, Denis Altukhov, Leonardo Langone, Michele Giani, Stefano Cozzi, Snejana Moncheva, Philippe Koubbi, Ahsen Yüksek, Barak Herut, Dror L. Angel, Ventzislav Karamfilov, Georgy Shapiro, Mario Sprovieri, X. Durrieu de Madron, M. Chakroun, Yelda Aktan, Bülent Topaloğlu, S. Fonda-Umani, S. Laroche, A. Gubanova, Nur Eda Topçu, M. T. Gomoiu, Zahit Uysal, Maria Pantazi, François Galgani, Universitat Politècnica de Catalunya. Departament d'Enginyeria Hidràulica, Marítima i Ambiental, Universitat Politècnica de Catalunya. LIM/UPC - Laboratori d'Enginyeria Marítima, Istituto Nazionale di Geofisica e di Oceanografia Sperimentale (OGS), Hellenic Centre for Marine Research (HCMR), Instituto de Ciencias Marinas de Andalucia [Cádiz, Espagne] (ICMAN), Consejo Superior de Investigaciones Científicas [Madrid] (CSIC), P.P. Shirshov Institute of Oceanology (SIO), Russian Academy of Sciences [Moscow] (RAS), JRC Institute for Environment and Sustainability (IES), European Commission - Joint Research Centre [Ispra] (JRC), Stazione Zoologica Anton Dohrn (SZN), Centre de Formation et de Recherche sur les Environnements Méditérranéens (CEFREM), Université de Perpignan Via Domitia (UPVD)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS), Laboratoire d'océanographie de Villefranche (LOV), Observatoire océanologique de Villefranche-sur-mer (OOVM), Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Institute of Marine Sciences / Institut de Ciències del Mar [Barcelona] (ICM), Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER), University of Haifa [Haifa], A.O. Kovalevskiy Institute of Biology of Southern Seas [Sevastopol, Ukraine], Istanbul University, Laboratoire de Réactivité de Surface (LRS), Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Laboratoire de Robotique de Versailles (LRV), Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Centre National de la Recherche Scientifique (CNRS), Universitat de Barcelona (UB), SAROST SA [Tunis, Tunisie], Institutul National de Cercetare-Dezvoltare pentru Geologie si Geoecologie Marina (INCD GeoEcoMar), National Research Council of Italy | Consiglio Nazionale delle Ricerche (CNR), University of Malta [Malta], Agenzia Nazionale per le nuove Tecnologie, l’energia e lo sviluppo economico sostenibile = Italian National Agency for New Technologies, Energy and Sustainable Economic Development (ENEA), Institut National de Recherche Halieutique [Casablanca, Maroc] (INRH), Consorzio Nazionale Interuniversitario per le Scienze del Mare [Rome, Italie] (CoNISma), Institut national des sciences de l'Univers (INSU - CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Institut de la Mer de Villefranche (IMEV), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Middle East Technical University [Ankara] (METU), Israel Oceanographic and Limnological Research (IOLR), Plymouth University, Laboratoire de Biotechnologie de l'Environnement [Narbonne] (LBE), Institut National de la Recherche Agronomique (INRA)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Bulgarian Academy of Sciences (BAS), Biologie des Organismes et Ecosystèmes Aquatiques (BOREA), Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Institute of Oceanography and Fisheries, Marine Hydrophysical Institute (MHI), National Academy of Sciences of Ukraine (NASU), National Institute of Biology [Ljubljana] (NIB), Odessa National I.I.Mechnikov University, Environmental Chemical Processes Laboratory [Heraklion] (ECPL), Department of Chemistry [Heraklion], University of Crete [Heraklion] (UOC)-University of Crete [Heraklion] (UOC), Institute of Oceanology of Bulgarian Academy of Sciences (IO-BAS), Laboratoire des Propriétés Mécaniques et Thermodynamiques des Matériaux (LPMTM), Université Paris 13 (UP13)-Institut Galilée-Centre National de la Recherche Scientifique (CNRS), National Institute of Marine Geology and Geoecology (Romania), Instituto Español de Oceanografía (IEO), Málaga., UMR 212 EME 'écosystèmes marins exploités' (EME), Institut de Recherche pour le Développement (IRD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Montpellier (UM), Istituto di Biofisica [Pisa] (IBF), University of Crete [Heraklion] (UOC), Huazhong University of Science and Technology [Wuhan] (HUST), European Project: 287600,EC:FP7:ENV,FP7-OCEAN-2011,PERSEUS(2012), Instituto de Ciencias Marinas de Andalucía, Stazione Zoologica Anton Dhorn, Université de Perpignan Via Domitia (UPVD)-Centre National de la Recherche Scientifique (CNRS), Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Observatoire océanologique de Villefranche-sur-mer (OOVM), Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Consejo Superior de Investigaciones Científicas [Spain] (CSIC), Plankton Department, Institute of Biology of the Southern Seas (IBSS), Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS), Stazione Zoologica Napoli, GRC Geociències Marines, Department de Estratigrafía, SAROST, SAROST Agency, Immeuble Saadi Tour EF, El Menzah IV, Tunis, 1082, Tunisia, affiliation inconnue, Institutul Naţional de Cercetare - Dezvoltare Marină 'Grigore Antipa' (INCDM), Consiglio Nazionale delle Ricerche [Roma] (CNR), ENEA Ente per le Nuove Technologie Energia e Ambiente, Centro Ricerche Casaccia, Centro Ricerche Casaccia, Institut National de Recherche Halieutique, Departement of Life Sciences, University of Trieste, Laboratoire Environnement Ressources Provence - Azur - Corse, Institut de recherche en informatique de Toulouse (IRIT), Université Toulouse 1 Capitole (UT1)-Université Toulouse - Jean Jaurès (UT2J)-Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées, Institute of Marine Science (IMS), Israel Oceanographic and Limnological Research - IOLR (ISRAEL), Agencia Estatal Consejo Superior de Investigaciones Cientificas, Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro)-Institut National de la Recherche Agronomique (INRA), Institute of Biodiversity and Ecosystem Research (IBER), the Ukrainian National Academy of Sciences, Nacionalni Institut za Biliogito (NIB), Odessa National University, Centre National de la Recherche Scientifique (CNRS)-Institut Galilée-Université Paris 13 (UP13), Instituto Espanol de Oceanografia, Instituto Español de Oceanografía, Italian National Agency for New Technologies, Energy and Sustainable Economic Development (ENEA), Istituto per l'Ambiente Marino Costiero, European Commission, Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ), Agenzia Nazionale per le nuove Tecnologie, l’energia e lo sviluppo economico sostenibile (ENEA), Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)-Muséum national d'Histoire naturelle (MNHN)-Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU), Crise, A, Kaberi, H., Ruiz, J., Zatsepin, A., Arashkevich, E., Giani, M., Karageorgis, A. P., Prieto, L., Pantazi, M., Gonzalez Fernandez, D., Ribera d'Alcalà, M., Tornero, V., Vassilopoulou, V., Durrieu de Madron, X., Guieu, C., Puig, P., Zenetos, A., Andral, B., Angel, D., Altukhov, D., Ayata, S. D., Aktan, Y., Balcioğlu, E., Benedetti, F., Bouchoucha, M., Buia, M. C., Cadiou, J. F., Canals, M., Chakroun, M., Christou, E., Christidis, M. G., Civitarese, G., Coatu, V., Corsini Foka, M., Cozzi, S., Deidun, A., Dell'Aquila, A., Dogrammatzi, A., Dumitrache, C., Edelist, D., Ettahiri, O., Fonda, Serena, Gana, S., Galgani, F., Gasparini, S., Giannakourou, A., Gomoiu, M. T., Gubanova, A., Gücü, A. C., Gürses, O., Hanke, G., Hatzianestis, I., Herut, B., Hone, R., Huertas, E., Irisson, J. O., Işinibilir, M., Jimenez, J. A., Kalogirou, S., Kapiris, K., Karamfilov, V., Kavadas, S., Keskin, C., Kideyş, A. E., Kocak, M., Kondylatos, G., Kontogiannis, C., Kosyan, R., Koubbi, P., Kušpilić, G., La Ferla, R., Langone, L., Laroche, S., Lazar, L., Lefkaditou, E., Lemeshko, I. E., Machias, A., Malej, A., Mazzocchi, M. G., Medinets, V., Mihalopoulos, N., Miserocchi, S., Moncheva, S., Mukhanov, V., Oaie, G., Oros, A., Öztürk, A. A., Öztürk, B., Panayotova, M., Prospathopoulos, A., Radu, G., Raykov, V., Reglero, P., Reygondeau, G., Rougeron, N., Salihoglu, B., Sanchez Vidal, A., Sannino, G., Santinelli, C., Secrieru, D., Shapiro, G., Simboura, N., Shiganova, T., Sprovieri, M., Stefanova, K., Streftaris, N., Tirelli, V., Tom, M., Topaloğlu, B., Topçu, N. E., Tsagarakis, K., Tsangaris, C., Tserpes, G., Tuğrul, S., Uysal, Z., Vasile, D., Violaki, K., Xu, J., Yüksek, A., Papathanassiou, E., Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), and Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut National de la Recherche Agronomique (INRA)

Subjects
Conservation of Natural Resources, Good Environmental Status, Oceans and Seas, Biodiversity, Initial Assessment, Marine Strategy Framework Directive, PERSEUS project, Southern European Seas, Aquatic Science, Oceanography, Pollution, Biology, Marine pollution--European Union countries, Environmental protection, Marine debris, Pressure, 14. Life underwater, SDG 14 - Life Below Water, Good Environmental Statu, Ecosystem, [SDU.STU.OC]Sciences of the Universe [physics]/Earth Sciences/Oceanography, Underwater noise, business.industry, Environmental resource management, Additional research, Environmental Policy, Europe, Enginyeria civil::Impacte ambiental [Àrees temàtiques de la UPC], Mar -- Contaminació -- Política comunitària -- Unió Europea, 13. Climate action, Enginyeria civil::Enginyeria hidràulica, marítima i sanitària::Ports i costes [Àrees temàtiques de la UPC], Southern European Sea, business, Environmental Monitoring
Abstract

Crise, A. ... et. al.-- 12 pages, 1 figure, 5 tables, PERSEUS project aims to identify the most relevant pressures exerted on the ecosystems of the Southern European Seas (SES), highlighting knowledge and data gaps that endanger the achievement of SES Good Environmental Status (GES) as mandated by the Marine Strategy Framework Directive (MSFD). A complementary approach has been adopted, by a meta-analysis of existing literature on pressure/impact/knowledge gaps summarized in tables related to the MSFD descriptors, discriminating open waters from coastal areas. A comparative assessment of the Initial Assessments (IAs) for five SES countries has been also independently performed. The comparison between meta-analysis results and IAs shows similarities for coastal areas only. Major knowledge gaps have been detected for the biodiversity, marine food web, marine litter and underwater noise descriptors. The meta-analysis also allowed the identification of additional research themes targeting research topics that are requested to the achievement of GES. © 2015 The Authors, This work has been partially funded by the EC FP7 PERSEUS Project (Grant. Agr. 287600)

Published
2015

10. The Ocean Sampling Day Consortium

Author

Oleksandra Bobrova, Petra ten Hoopen, Rodrigo Costa, Rania Siam, Rehab Z. Abdallah, Jorge A. Herrera Silveira, Catarina Magalhães, Nedime Serakinci, Marie E. DeLorenzo, Riccardo Rosselli, Paul Malthouse, Lise Øvreås, Eyjólfur Reynisson, Susan Gebbels, Francesca Malfatti, Frank Oliver Glöckner, Federico M. Lauro, Hans Erik Karlsen, David Wallom, Christian Jeanthon, Mark J. Costello, Fergal O'Gara, Nadezhda Todorova, Ana C. Costa, Monia El Bour, Paul D. van Ruth, Ivaylo Kostadinov, Martin Ostrowski, Jed A. Fuhrman, Viggo Marteinsson, Thierry Cariou, Hiroyuki Ogata, Maria Luiza Pedrotti, Emilie Villar, Federico Baltar, Sandi Orlić, Valentina Turk, Katja Lehmann, Dawn Field, Renzo Kottmann, Florence Jude-Lemeilleur, Daniel Vaulot, Alessandro Vezzi, Neil M Davies, Mahrous M. Kandil, Véronique Berteaux-Lecellier, Christopher D. Sinigalliano, Timothy W. Davis, Peter N. Golyshin, Stéphane L'Haridon, Jonathan A. Martinez, Sandra Ramos, Pascal Conan, Ma. Leopoldina Aguirre-Macedo, Antonio Fernandez-Guerra, Soumya Essayeh, Clara Loureiro, Edvardsen Bente, Noureddine Boukhatem, Rachelle M. Jensen, Sophie Pitois, Bouchra Chaouni, Kate Munnik, Anke Kremp, Stephane Pesant, Roberto Danovaro, Cecilia Alonso, Said Barrijal, Jodie van de Kamp, Michail M. Yakimov, Nicole J. Poulton, Zackary I. Johnson, Adriana Zingone, Bernardo Duarte, Ilkay Salihoglu, Paraskevi N. Polymenakou, Jack A. Gilbert, Melody S. Clark, Ian Salter, Hassan Ghazal, Julie LaRoche, J. Mortelmans, Ranjith Edirisinghe, Grazia Marina Quero, Dion Matthew Frederick Frampton, Isabel Caçador, Georgios Tsiamis, Declan C. Schroeder, Jamie Hinks, Ana Martins, Noga Stambler, Rachel Collin, João Canning-Clode, Tinkara Tinta, Mesude Bicak, Scott Jones, Valentina Amaral, Matthias S. Ullrich, Gunnar Gerdts, Klaas Deneudt, Michael Steinke, Mohamed Bennani, Rafael Santana, Fabio De Pascale, Jennifer Tolman, Juan Iriberri, Levente Bodrossy, Abderrahim Bouali, Antonella Penna, Bruno Cataletto, Josep M. Gasol, Florencia Biancalana, Maribeth L. Gidley, Stephen A. Jackson, Mahmut Cerkez Ergoren, Carolin R. Löscher, Antje Wichels, Ventzislav Karamfilov, R. Eric Collins, Sara Ettamimi, Riccardo Schiavon, Mohammed Timinouni, Christina Bienhold, Julia Schnetzer, Marc E. Frischer, Wayne J. Fuller, Simon Claus, Ibon Cancio, Guy Cochrane, Patrick Martin, Gian Marco Luna, Snejana Moncheva, Linda A. Amaral-Zettler, Eva C. Sonnenschein, Paul Anders Fronth Nyhus, Shiao Y. Wang, Antonina Dos Santos, Eyal Rahav, Eileen Bresnan, Anna Kopf, Barker Katherine, Michèle Barbier, Naiara Rodríguez-Ezpeleta, Kemal Can Bizsel, Tim Ingleton, Patricia Wecker, Julia A. Busch, Kelly D. Goodwin, El Houcine Zaid, Rajaa Chahboune, Takashi Yoshida, Fatima El Otmani, Marianna Mea, Nina Dzhembekova, Anne-Lise Ducluzeau, Christopher P. Meyer, Georgios Kotoulas, Max Planck Institute for Marine Microbiology, Max-Planck-Gesellschaft, Jacobs University [Bremen], University of Oxford, Centre for Ecology & Hydrology, Oxfordshire UK, Adaptation et diversité en milieu marin (AD2M), Station biologique de Roscoff [Roscoff] (SBR), Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Israel Oceanographic and Limnological Research (IOLR), Alfred-Wegener-Institut, Helmholtz-Zentrum für Polar- und Meeresforschung (AWI), Hellenic Centre for Marine Research (HCMR), American University in Cairo, Danmarks Tekniske Universitet = Technical University of Denmark (DTU), Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS), University College Cork (UCC), Curtin University [Perth], Planning and Transport Research Centre (PATREC), Institut Ruder Boskovic, Institut Ruđer Bošković (IRB), University of Essex, Carl Von Ossietzky Universität Oldenburg = Carl von Ossietzky University of Oldenburg (OFFIS), Universidade de Lisboa = University of Lisbon (ULISBOA), Smithonian Environmental Research Center, Research Center, Odessa National I.I.Mechnikov University, Matis Ltd, Universidade dos Açores, Istituto di Science Marine (ISMAR ), National Research Council of Italy | Consiglio Nazionale delle Ricerche (CNR), Helmholtz Centre for Ocean Research [Kiel] (GEOMAR), Finnish Environment Institute (SYKE), National Oceanic and Atmospheric Administration (NOAA), University of Bergen (UiB), Dalhousie University [Halifax], Università di Urbino, Skidaway Institute of Oceanography, Smithsonian Institution, Interdisciplinary Centre of Marine and Environmental Research [Matosinhos, Portugal] (CIIMAR), Universidade do Porto = University of Porto, Environnements et Paléoenvironnements OCéaniques (EPOC), Observatoire aquitain des sciences de l'univers (OASU), Université Sciences et Technologies - Bordeaux 1 (UB)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Sciences et Technologies - Bordeaux 1 (UB)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS), Centro de Investigacion y de Estudios Avanzados del Instituto Politécnico Nacional (CINVESTAV), Mississippi State University [Mississippi], Bigelow Laboratory for Ocean Sciences, Smithsonian Marine Station, Smithsonian Tropical Research Institute, University of Southern California (USC), Laboratoire d'Océanographie Microbienne (LOMIC), Observatoire océanologique de Banyuls (OOB), Universidad de la República [Montevideo] (UDELAR), Bar-Ilan University [Israël], The Interuniversity Institute for marine Science in Eilat, IAMC-CNR, Istituto per l'Ambiente Marino Costiero &ndash, University of Otago [Dunedin, Nouvelle-Zélande], Commonwealth Scientific and Industrial Research Organisation [Canberra] (CSIRO), Macquarie University, South Australian Research and Development Institute (SARDI), South Australian Research and Development Institute, Flanders Marine Institute, VLIZ, Centre for Environment, Fisheries and Aquaculture Science [Weymouth] (CEFAS), University of Algarve [Portugal], Marine Biological Association of the UK, Department of Chemistry, Alexandria University [Alexandrie], Argentine Institute of Oceanography, Laboratoire d'océanographie de Villefranche (LOV), Observatoire océanologique de Villefranche-sur-mer (OOVM), Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Kyoto University, University of Tasmania [Hobart, Australia] (UTAS), Waters, wetlands & coasts Sydney, Lwande technologies Cape Town, AZTI (AZTI), AZTI, Centre de recherches insulaires et observatoire de l'environnement (CRIOBE), Université de Perpignan Via Domitia (UPVD)-École Pratique des Hautes Études (EPHE), University of the Basque Country/Euskal Herriko Unibertsitatea (UPV/EHU), Université Mohammed Premier [Oujda], Université Mohammed V de Rabat [Agdal] (UM5), Université Sidi Mohamed Ben Abdellah (USMBA), Université Abdelmalek Essaâdi (UAE), Institut Pasteur du Maroc, Réseau International des Instituts Pasteur (RIIP), Faculty of Sciences, Rabat, Morocco., Bulgarian Academy of Sciences (BAS), European Bioinformatics Institute [Hinxton] (EMBL-EBI), EMBL Heidelberg, Université de Brest (UBO), Dokuz Eylül Üniversitesi = Dokuz Eylül University [Izmir] (DEÜ), Università degli Studi di Padova = University of Padua (Unipd), Singapore centre for environmental life sciences engineering, Nanyang Technological University [Singapour], Indigo V Expeditions, Newcastle University [Newcastle], Instituto Português de Investigação do Mar e da Atmosfera (IPMA), Information génomique et structurale (IGS), Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS), Universität Bremen, Istituto Nazionale di Geofisica e di Oceanografia Sperimentale (OGS), Rajarata University of Sri-Lanka (RUSL), University of Southern Mississippi (USM), Mediterranean Science Commission, National institute of biology Fornace, Near East University, Marine Scotland Marine Laboratory, Kind of Blue Project ABS, University of Oslo (UiO), Marine biology research station, Bangor University, Institute of Marine Sciences / Institut de Ciències del Mar [Barcelona] (ICM), Consejo Superior de Investigaciones Científicas [Madrid] (CSIC), Fridtjof Nansen Institute of oceanology, Duke University [Durham], Miami University, Miami University [Ohio] (MU), Stazione Zoologica Anton Dohrn (SZN), Polytechnic University of Marche, University of Patras, British Antarctic Survey (BAS), Natural Environment Research Council (NERC), INSTIM, University of Alaska [Fairbanks] (UAF), University of Hawaii, University of Auckland [Auckland], Marine Biological Laboratory (MBL), University of Chicago, Brown University, Zhejiang University, Argonne National Laboratory [Lemont] (ANL), Department of Mathematics [Berkeley], University of California [Berkeley] (UC Berkeley), University of California (UC)-University of California (UC), Repositório da Universidade de Lisboa, Kopf, A, Bicak, M, Kottmann, R, Schnetzer, J, Kostadinov, I, Lehmann, K, Fernandez-Guerra, A, Jeanthon, C, Rahav, E, Ullrich, M, Wichels, A, Gerdts, G, Polymenakou, P, Kotoulas, G, Siam, R, Abdallah, Rz, Sonnenschein, Ec, Cariou, T, O'Gara, F, Jackson, S, Orlic, S, Steinke, M, Busch, J, Duarte, B, Cacador, I, Canning-Clode, J, Bobrova, O, Marteinsson, V, Reynisson, E, Loureiro, Cm, Luna, Gm, Quero, Gm, Loscher, Cr, Kremp, A, Delorenzo, Me, Ovreas, L, Tolman, J, Laroche, J, Penna, A, Frischer, M, Davis, T, Katherine, B, Meyer, Cp, Ramos, S, Magalhaes, C, Jude-Lemeilleur, F, Aguirre-Macedo, Ml, Wang, S, Poulton, N, Jones, S, Collin, R, Fuhrman, Ja, Conan, P, Alonso, C, Stambler, N, Goodwin, K, Yakimov, Mm, Baltar, F, Bodrossy, L, Van De Kamp, J, Frampton, Dmf, Ostrowski, M, Van Ruth, P, Malthouse, P, Claus, S, Deneudt, K, Mortelmans, J, Pitois, S, Wallom, D, Salter, I, Costa, R, Schroeder, Dc, Kandil, Mm, Amaral, V, Biancalana, F, Santana, R, Pedrotti, Ml, Yoshida, T, Ogata, H, Ingleton, T, Munnik, K, Rodriguez-Ezpeleta, N, Berteaux-Lecellier, V, Wecker, P, Cancio, I, Vaulot, D, Bienhold, C, Ghazal, H, Chaouni, B, Essayeh, S, Ettamimi, S, Zaid, E, Boukhatem, N, Bouali, A, Chahboune, R, Barrijal, S, Timinouni, M, El Otmani, F, Bennani, M, Mea, M, Todorova, N, Karamfilov, V, ten Hoopen, P, Cochrane, G, L'Haridon, S, Bizsel, Kc, Vezzi, A, Lauro, Fm, Martin, P, Jensen, Rm, Hinks, J, Gebbels, S, Rosselli, R, De Pascale, F, Schiavon, R, dos Santos, A, Villar, E, Pesant, S, Cataletto, B, Malfatti, F, Edirisinghe, R, Silveira, Jah, Barbier, M, Turk, V, Tinta, T, Fuller, Wj, Salihoglu, I, Serakinci, N, Ergoren, Mc, Bresnan, E, Iriberri, J, Nyhus, Paf, Bente, E, Karlsen, He, Golyshin, Pn, Gasol, Jm, Moncheva, S, Dzhembekova, N, Johnson, Z, Sinigalliano, Cd, Gidley, Ml, Zingone, A, Danovaro, R, Tsiamis, G, Clark, M, Costa, Ac, El Bour, M, Martins, Am, Collins, Re, Ducluzeau, Al, Martinez, J, Costello, Mj, Amaral-Zettler, La, Gilbert, Ja, Davies, N, Field, D, Glockner, Fo, European Commission, University of Oxford [Oxford], Israel Oceanographic and Limnological Research - IOLR (ISRAEL), Danmarks Tekniske Universitet (DTU), Carl Von Ossietzky Universität Oldenburg, Universidade de Lisboa (ULISBOA), Consiglio Nazionale delle Ricerche (CNR), Universidade do Porto, UMR 5805 Environnements et Paléoenvironnements Océaniques et Continentaux (EPOC), Université Sciences et Technologies - Bordeaux 1-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Sciences et Technologies - Bordeaux 1-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-École pratique des hautes études (EPHE), Universidad de la República [Montevideo] (UCUR), Kyoto University [Kyoto], Université de Perpignan Via Domitia (UPVD)-École pratique des hautes études (EPHE), University of Mohammed V, Sidi Mohammed Ben Abdellah University, Universita degli Studi di Padova, Rajarata University of Sri-Lanka, University of Patras [Patras], University of California [Berkeley], and University of California-University of California

Subjects
0106 biological sciences, Biodiversity, Marine life, 01 natural sciences, Bacteria, Genomics, Health Index, Marine, Metagenomics, Micro B3, Microorganism, OSD, Ocean sampling day, Standards, 11. Sustainability, Data and Information, Ocean Sampling Day, biodiversity, genomics, health index, bacteria, microorganism, metagenomics, marine, standards, [SDU.OCEAN]Sciences of the Universe [physics]/Ocean, Atmosphere, 0303 health sciences, Ecology, Environmental resource management, Geology, Computer Science Applications, Interdisciplinary Natural Sciences, Microbial biodiversity, [SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology, Ocean sampling day, OSD, Biodiversity, Genomics, Health Index, Bacteria, Microorganism, Metagenomics,Marine, Micro B3, Standards, Oceans and Seas, Microorganisms, Marine Biology, Health Informatics, [SDV.BID]Life Sciences [q-bio]/Biodiversity, Biology, Ecology and Environment, Metagenomic, 03 medical and health sciences, Health index, Medisinske Fag: 700 [VDP], SDG 14 - Life Below Water, 14. Life underwater, 030304 developmental biology, business.industry, 010604 marine biology & hydrobiology, Ocean sampling, 13. Climate action, Commentary, Genomic, Database Management Systems, Global Ocean, business
Abstract

Kopf, Anna ... et. al.-- 5 pages, 1 figure.-- This manuscript is NOAA-GLERL contribution number 1763, Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world’s oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized microbial data set in a single day. This will be achievable only through the coordinated efforts of an Ocean Sampling Day Consortium, supportive partnerships and networks between sites. This commentary outlines the establishment, function and aims of the Consortium and describes our vision for a sustainable study of marine microbial communities and their embedded functional traits, This work was supported by the Micro B3 project, which is funded from the European Union’s Seventh Framework Programme (FP7; Joint Call OCEAN.2011‐2: Marine microbial diversity – new insights into marine ecosystems functioning and its biotechnological potential) under the grant agreement no 287589

Published
2015

11. High microplastic pollution in marine sediments associated with urbanised areas along the SW Bulgarian Black Sea coast.

Author

Bobchev N, Berov D, Klayn S, and Karamfilov V

Abstract

This study aims to provide baseline data on microplastic (MP) concentrations in beach and seabed sediments of the SW Black Sea coast, and to identify possible sources of MP pollution in the area. MP concentrations in beach sediments in urbanised coastal areas, as well as in all seabed sediments, were on average higher than in other parts of the Black Sea and most other European seas. Urban coastal areas showed the highest average MP concentrations (mean ± SD): 464.44 ± 272.50 MP·kg -1 dry sediment in beach samples, 825.93 ± 396.30 MP·kg -1 dry sediment in seabed samples, while coastal sediments in an area with no local anthropogenic activities had significantly lower average MP concentrations: 84.44 ± 147.57 MP·kg -1 in beach samples, and 550.62 ± 245.71 MP·kg -1 in seabed samples. Possible identified sources of MPs include sewage water discharges, urban waste, coastal fisheries and aquaculture, as well as accumulation of marine litter on beaches and in adjacent offshore areas, serving as sources of secondary MP pollution., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Authors. Published by Elsevier Ltd.. All rights reserved.)

Published
2024
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12. Current distribution of Zostera seagrass meadows along the Bulgarian Black Sea coast (SW Black Sea, Bulgaria) (2010-2020).

Author

Berov D, Klayn S, Deyanova D, and Karamfilov V

Abstract

Background: The current distribution of Zostera spp. seagrass meadows along the Bulgarian Black Sea coast was studied. We used a combination of historical and recent observations of the habitat along the studied coastline. Remote sensing data (satellite images, sonar side-scans) was groundtruthed with georeferenced drop camera observations, scuba diving sampling and georeferenced scuba diving photo and video transects., New Information: Тhe total area of the habitat type 'MB548 - Black Sea seagrass meadows on lower infralittoral sands' (EUNIS habitat type list 2019) in the study area is 916.9 ha, of which only 17.9 ha are in man-made sheltered environments (harbours). All seagrass meadows identified in 1978-79 were also located during the current survey, despite the increased eutrophication pressure and overall degradation of benthic habitats in the western Black Sea during the 1980s and early 1990s., (Dimitar Berov, Stefania Klayn, Diana Deyanova, Ventzislav Karamfilov.)

Published
2022
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13. Benthic habitat mapping of Plazh Gradina - Zlatna ribka (Black Sea) and Karpathos and Saria Islands (Mediterranean Sea).

Author

Nikolopoulou S, Berov D, Klayn S, Dimitrov LI, Velkovsky K, Chatzinikolaou E, Chatzigeorgiou G, Karamfilov V, and Pavloudi C

Abstract

Background: Habitat mapping is nеcessary for the efficient conservation and protection of marine ecosystems. In addition, it is a requirement for EU Member States as stated in the European Union (EU) Habitats Directive (92/43/EEC), as well as necessary for the achievement and maintenance of 'good environmental status (GES)' of benthic marine habitats in the framework of the EU Marine Strategy Framework Directive (2008/56/EC)., New Information: This study provides baseline information on the marine benthic habitats of Sozopol Bay (Black Sea) and Karpathos and Saria Islands (Mediterranean Sea). These two Natura 2000 sites were selected as study sites of the RECONNECT project, which aimed at creating a transnational cooperative network to confront the environmental threats of ecosystems with a high natural and cultural interest, by the establishment of common practices and a joint regional strategy. The specific objective was to map the marine habitats using a defined a priori classification (EUNIS), with the ultimate purpose of supporting government marine spatial planning, management and decision-making processes through the development of a Decision Support System., (Stamatina Nikolopoulou, Dimitar Berov, Stefania Klayn, Lyubomir I. Dimitrov, Kiril Velkovsky, Eva Chatzinikolaou, Giorgos Chatzigeorgiou, Ventzislav Karamfilov, Christina Pavloudi.)

Published
2021
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14. Sediment Properties as Important Predictors of Carbon Storage in Zostera marina Meadows: A Comparison of Four European Areas.

Author

Dahl M, Deyanova D, Gütschow S, Asplund ME, Lyimo LD, Karamfilov V, Santos R, Björk M, and Gullström M

Subjects
Algorithms, Atlantic Ocean, Black Sea, Bulgaria, Conservation of Natural Resources methods, Estuaries, Geography, Least-Squares Analysis, Organic Chemicals metabolism, Particle Size, Population Density, Portugal, Sweden, Carbon metabolism, Ecosystem, Geologic Sediments chemistry, Zosteraceae physiology
Abstract

Seagrass ecosystems are important natural carbon sinks but their efficiency varies greatly depending on species composition and environmental conditions. What causes this variation is not fully known and could have important implications for management and protection of the seagrass habitat to continue to act as a natural carbon sink. Here, we assessed sedimentary organic carbon in Zostera marina meadows (and adjacent unvegetated sediment) in four distinct areas of Europe (Gullmar Fjord on the Swedish Skagerrak coast, Askö in the Baltic Sea, Sozopol in the Black Sea and Ria Formosa in southern Portugal) down to ~35 cm depth. We also tested how sedimentary organic carbon in Z. marina meadows relates to different sediment characteristics, a range of seagrass-associated variables and water depth. The seagrass carbon storage varied greatly among areas, with an average organic carbon content ranging from 2.79 ± 0.50% in the Gullmar Fjord to 0.17 ± 0.02% in the area of Sozopol. We found that a high proportion of fine grain size, high porosity and low density of the sediment is strongly related to high carbon content in Z. marina sediment. We suggest that sediment properties should be included as an important factor when evaluating high priority areas in management of Z. marina generated carbon sinks., Competing Interests: The authors have declared that no competing interests exist.

Published
2016
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15. Microbial assemblages for environmental quality assessment: Knowledge, gaps and usefulness in the European Marine Strategy Framework Directive.

Author

Caruso G, La Ferla R, Azzaro M, Zoppini A, Marino G, Petochi T, Corinaldesi C, Leonardi M, Zaccone R, Fonda Umani S, Caroppo C, Monticelli L, Azzaro F, Decembrini F, Maimone G, Cavallo RA, Stabili L, Hristova Todorova N, K Karamfilov V, Rastelli E, Cappello S, Acquaviva MI, Narracci M, De Angelis R, Del Negro P, Latini M, and Danovaro R

Subjects
Bacteria genetics, Bacteria isolation & purification, Biodiversity, Europe, Oceans and Seas, Phylogeny, Viruses genetics, Viruses isolation & purification, Bacteria classification, Seawater microbiology, Seawater virology, Viruses classification
Abstract

The EU Marine Strategy Framework Directive 2008/56/EC (MSFD) defines a framework for Community actions in the field of marine environmental policy in order to achieve and/or maintain the Good Environmental Status (GES) of the European seas by 2020. Microbial assemblages (from viruses to microbial-sized metazoa) provide a major contribution to global biodiversity and play a crucial role in the functioning of marine ecosystems, but are largely ignored by the MSFD. Prokaryotes are only seen as "microbial pathogens," without defining their role in GES indicators. However, structural or functional prokaryotic variables (abundance, biodiversity and metabolism) can be easily incorporated into several MSFD descriptors (i.e. D1. biodiversity, D4. food webs, D5. eutrophication, D8. contaminants and D9. contaminants in seafood) with beneficial effects. This review provides a critical analysis of the current MSFD descriptors and illustrates the reliability and advantages of the potential incorporation of some prokaryotic variables within the set of indicators of marine environmental quality. Following a cost/benefit analysis against scientific and economic criteria, we conclude that marine microbial components, and particularly prokaryotes, are highly effective for detecting the effects of anthropogenic pressures on marine environments and for assessing changes in the environmental health status. Thus, we recommend the inclusion of these components in future implementations of the MSFD.

Published
2016
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16. Two-Year Monitoring of Water Samples from Dam of Iskar and the Black Sea, Bulgaria, by Molecular Analysis: Focus on Mycobacterium spp.

Author

Panaiotov S, Simeonovski I, Levterova V, Karamfilov V, Brankova N, Tankova K, Campbell K, Jacob P, Helmi K, Boots B, D'Ugo E, Marcheggiani S, Mancini L, Breitenbach U, Mielke E, and Kantardjiev T

Subjects
Black Sea, Bulgaria, Cryptosporidium isolation & purification, Ecosystem, Fresh Water, Humans, Recreation, Seasons, Water Pollution, Environmental Medicine, Mycobacterium isolation & purification, Water Microbiology
Abstract

The coast of the Bulgarian Black Sea is a popular summer holiday destination. The Dam of Iskar is the largest artificial dam in Bulgaria, with a capacity of 675 million m3. It is the main source of tap water for the capital Sofia and for irrigating the surrounding valley. There is a close relationship between the quality of aquatic ecosystems and human health as many infections are waterborne. Rapid molecular methods for the analysis of highly pathogenic bacteria have been developed for monitoring quality. Mycobacterial species can be isolated from waste, surface, recreational, ground and tap waters and human pathogenicity of nontuberculose mycobacteria (NTM) is well recognized. The objective of our study was to perform molecular analysis for key-pathogens, with a focus on mycobacteria, in water samples collected from the Black Sea and the Dam of Iskar. In a two year period, 38 water samples were collected-24 from the Dam of Iskar and 14 from the Black Sea coastal zone. Fifty liter water samples were concentrated by ultrafiltration. Molecular analysis for 15 pathogens, including all species of genus Mycobacterium was performed. Our results showed presence of Vibrio spp. in the Black Sea. Rotavirus A was also identified in four samples from the Dam of Iskar. Toxigenic Escherichia coli was present in both locations, based on markers for stx1 and stx2 genes. No detectable amounts of Cryptosporidium were detected in either location using immunomagnetic separation and fluorescence microscopy. Furthermore, mass spectrometry analyses did not detect key cyanobacterial toxins. On the basis of the results obtained we can conclude that for the period 2012-2014 no Mycobacterium species were present in the water samples. During the study period no cases of waterborne infections were reported.

Published
2015
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17. The ocean sampling day consortium.

Author

Kopf A, Bicak M, Kottmann R, Schnetzer J, Kostadinov I, Lehmann K, Fernandez-Guerra A, Jeanthon C, Rahav E, Ullrich M, Wichels A, Gerdts G, Polymenakou P, Kotoulas G, Siam R, Abdallah RZ, Sonnenschein EC, Cariou T, O'Gara F, Jackson S, Orlic S, Steinke M, Busch J, Duarte B, Caçador I, Canning-Clode J, Bobrova O, Marteinsson V, Reynisson E, Loureiro CM, Luna GM, Quero GM, Löscher CR, Kremp A, DeLorenzo ME, Øvreås L, Tolman J, LaRoche J, Penna A, Frischer M, Davis T, Katherine B, Meyer CP, Ramos S, Magalhães C, Jude-Lemeilleur F, Aguirre-Macedo ML, Wang S, Poulton N, Jones S, Collin R, Fuhrman JA, Conan P, Alonso C, Stambler N, Goodwin K, Yakimov MM, Baltar F, Bodrossy L, Van De Kamp J, Frampton DM, Ostrowski M, Van Ruth P, Malthouse P, Claus S, Deneudt K, Mortelmans J, Pitois S, Wallom D, Salter I, Costa R, Schroeder DC, Kandil MM, Amaral V, Biancalana F, Santana R, Pedrotti ML, Yoshida T, Ogata H, Ingleton T, Munnik K, Rodriguez-Ezpeleta N, Berteaux-Lecellier V, Wecker P, Cancio I, Vaulot D, Bienhold C, Ghazal H, Chaouni B, Essayeh S, Ettamimi S, Zaid el H, Boukhatem N, Bouali A, Chahboune R, Barrijal S, Timinouni M, El Otmani F, Bennani M, Mea M, Todorova N, Karamfilov V, Ten Hoopen P, Cochrane G, L'Haridon S, Bizsel KC, Vezzi A, Lauro FM, Martin P, Jensen RM, Hinks J, Gebbels S, Rosselli R, De Pascale F, Schiavon R, Dos Santos A, Villar E, Pesant S, Cataletto B, Malfatti F, Edirisinghe R, Silveira JA, Barbier M, Turk V, Tinta T, Fuller WJ, Salihoglu I, Serakinci N, Ergoren MC, Bresnan E, Iriberri J, Nyhus PA, Bente E, Karlsen HE, Golyshin PN, Gasol JM, Moncheva S, Dzhembekova N, Johnson Z, Sinigalliano CD, Gidley ML, Zingone A, Danovaro R, Tsiamis G, Clark MS, Costa AC, El Bour M, Martins AM, Collins RE, Ducluzeau AL, Martinez J, Costello MJ, Amaral-Zettler LA, Gilbert JA, Davies N, Field D, and Glöckner FO

Subjects
Biodiversity, Database Management Systems, Metagenomics, Oceans and Seas, Marine Biology
Abstract

Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world's oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized microbial data set in a single day. This will be achievable only through the coordinated efforts of an Ocean Sampling Day Consortium, supportive partnerships and networks between sites. This commentary outlines the establishment, function and aims of the Consortium and describes our vision for a sustainable study of marine microbial communities and their embedded functional traits.

Published
2015
Full Text
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