10 results on '"Kar, Ritwika"'
Search Results
2. Transcriptional response of mushrooms to artificial sun exposure
- Author
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Krah, Franz‐Sebastian, primary, Hess, Jaqueline, additional, Hennicke, Florian, additional, Kar, Ritwika, additional, and Bässler, Claus, additional
- Published
- 2021
- Full Text
- View/download PDF
3. Functional characterization of two genes of the GDSL hydrolase gene family
- Author
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Kar, Ritwika and Grefen, Christopher (Prof. Dr.)
- Subjects
Spaltöffnung , Samenkeimung ,fungi ,stomata ,food and beverages ,stomata ledge ,Germination ,hydrolase ,GDSL - Abstract
Hydrolases are an important class of enzymes in living organisms. They include GDSL hydrolase, a family of hydrolytic enzymes with a broad range of substrates whose members are characterized by a distinct GDSL amino acid motif. In Arabidopsis thaliana, the GDSL hydrolase family contains 100 members, but the majority of the respective genes remain uncharacterized. Thus, the aim of this study is to characterize two homologous members of GDSL hydrolase, CGM3 and CGM4 (”Contains GDSL Motif”). The full-length CGM3 and CGM4 proteins were localized in the apoplast. Although CGM3 and CGM4 share high sequence similarity, CGM3 was expressed in imbibed seeds, and CGM4 in the early lineage of stomatal development. However, in the absence of CGM4, CGM3 was expressed in the early stomatal lineage cells, suggesting that these homologous genes are, at least in part, functionally redundant. This thesis explores the function of the homologous genes CGM3 and CGM4, based on the results of anatomical, physiological, biophysical and biochemical experiments using cgm3cgm4 T-DNA insertion lines. A comparison of the stomatal patterning and index of cgm3cgm4 and wild type showed no obvious differences, but the ultrastructure of the stomata included an apparently thicker stomatal ledge in cgm3cgm4 than in the wild type. Physiological experiments showed that, in response to various abiotic and biotic stimuli, cgm3cgm4 plants had a tendency of a decreased width to length ratio of the stomatal pore (aperture index) and a transpiration rate lower than that of wild type plants. A transcriptome analysis showed no obvious differences in ABA-induced gene expression between cgm3cgm4 and wild type plants. According to a biophysical analysis (atomic force microscopy) of the stiffness at the stomatal pore area, there was a tendency towards an increased stiffness in the stomata of the cgm3cgm4 mutants but not in those of the wild type. Additionally, a biochemical analysis of the cell wall composition of the mutant plants suggested a reduction in the abundance of polyphenol derivatives compared to the wild type. These results indicated that the cgm3cgm4 plants have a mechanical defect in the opening-closing dynamics of their mature stomata, independent of ABA signaling. A mature stoma consists of two guard cells surrounding the stomatal pore. During the developmental process, stomatal precursors undergo symmetric cell division, giving rise to guard cells. At a later stage of development, the stomatal pore is formed between the guard cells. The guard cell wall facing the pore is a crucial site for the establishment of a typical, unevenly thickened, cell wall architecture and stomatal ledge, which influences the opening-closing dynamics of stomata. The research described in this thesis provides that the GDSL hydrolase genes CGM3 and CGM4 play roles in cell wall biogenesis, influencing stomatal opening-closing dynamics.
- Published
- 2020
4. Transcriptional response of mushrooms to artificial sun exposure
- Author
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Krah, Franz-Sebastian, Hess, Jaqueline, Hennicke, Florian, Kar, Ritwika, Bässler, Claus, Krah, Franz-Sebastian, Hess, Jaqueline, Hennicke, Florian, Kar, Ritwika, and Bässler, Claus
- Abstract
Climate change causes increased tree mortality leading to canopy loss and thus sun-exposed forest floors. Sun exposure creates extreme temperatures and radiation, with potentially more drastic effects on forest organisms than the current increase in mean temperature. Such conditions might potentially negatively affect the maturation of mushrooms of forest fungi. A failure of reaching maturation would mean no sexual spore release and, thus, entail a loss of genetic diversity. However, we currently have a limited understanding of the quality and quantity of mushroom-specific molecular responses caused by sun exposure. Thus, to understand the short-term responses toward enhanced sun exposure, we exposed mushrooms of the wood-inhabiting forest species Lentinula edodes, while still attached to their mycelium and substrate, to artificial solar light (ca. 30°C and 100,000 lux) for 5, 30, and 60 min. We found significant differentially expressed genes at 30 and 60 min. Eukaryotic Orthologous Groups (KOG) class enrichment pointed to defense mechanisms. The 20 most significant differentially expressed genes showed the expression of heat-shock proteins, an important family of proteins under heat stress. Although preliminary, our results suggest mushroom-specific molecular responses to tolerate enhanced sun exposure as expected under climate change. Whether mushroom-specific molecular responses are able to maintain fungal fitness under opening forest canopies remains to be tested.
- Published
- 2021
5. European mushroom assemblages are darker in cold climates
- Author
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Krah, Franz-Sebastian, primary, Büntgen, Ulf, additional, Schaefer, Hanno, additional, Müller, Jörg, additional, Andrew, Carrie, additional, Boddy, Lynne, additional, Diez, Jeffrey, additional, Egli, Simon, additional, Freckleton, Robert, additional, Gange, Alan C., additional, Halvorsen, Rune, additional, Heegaard, Einar, additional, Heideroth, Antje, additional, Heibl, Christoph, additional, Heilmann-Clausen, Jacob, additional, Høiland, Klaus, additional, Kar, Ritwika, additional, Kauserud, Håvard, additional, Kirk, Paul M., additional, Kuyper, Thomas W., additional, Krisai-Greilhuber, Irmgard, additional, Norden, Jenni, additional, Papastefanou, Phillip, additional, Senn-Irlet, Beatrice, additional, and Bässler, Claus, additional
- Published
- 2019
- Full Text
- View/download PDF
6. European mushroom assemblages are darker in cold climates
- Author
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Krah, Franz-Sebastian, Buntgen, Ulf, Schaefer, Hanno, Mueller, Joerg, Andrew, Carrie, Boddy, Lynne, Diez, Jeffrey, Egli, Simon, Freckleton, Robert, Gange, Alan C., Halvorsen, Rune, Heegaard, Einar, Heideroth, Antje, Heibl, Christoph, Heilmann-Clausen, Jacob, Hoiland, Klaus, Kar, Ritwika, Kauserud, Havard, Kirk, Paul M., Kuyper, Thomas W., Krisai-Greilhuber, Irmgard, Norden, Jenni, Papastefanou, Phillip, Senn-Irlet, Beatrice, Baessler, Claus, Krah, Franz-Sebastian, Buntgen, Ulf, Schaefer, Hanno, Mueller, Joerg, Andrew, Carrie, Boddy, Lynne, Diez, Jeffrey, Egli, Simon, Freckleton, Robert, Gange, Alan C., Halvorsen, Rune, Heegaard, Einar, Heideroth, Antje, Heibl, Christoph, Heilmann-Clausen, Jacob, Hoiland, Klaus, Kar, Ritwika, Kauserud, Havard, Kirk, Paul M., Kuyper, Thomas W., Krisai-Greilhuber, Irmgard, Norden, Jenni, Papastefanou, Phillip, Senn-Irlet, Beatrice, and Baessler, Claus
- Published
- 2019
7. European mushroom assemblages are darker in cold climates
- Author
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Krah, Franz Sebastian, Büntgen, Ulf, Schaefer, Hanno, Müller, Jörg, Andrew, Carrie, Boddy, Lynne, Diez, Jeffrey, Egli, Simon, Freckleton, Robert, Gange, Alan C., Halvorsen, Rune, Heegaard, Einar, Heideroth, Antje, Heibl, Christoph, Heilmann-Clausen, Jacob, Høiland, Klaus, Kar, Ritwika, Kauserud, Håvard, Kirk, Paul M., Kuyper, Thomas W., Krisai-Greilhuber, Irmgard, Norden, Jenni, Papastefanou, Phillip, Senn-Irlet, Beatrice, Bässler, Claus, Krah, Franz Sebastian, Büntgen, Ulf, Schaefer, Hanno, Müller, Jörg, Andrew, Carrie, Boddy, Lynne, Diez, Jeffrey, Egli, Simon, Freckleton, Robert, Gange, Alan C., Halvorsen, Rune, Heegaard, Einar, Heideroth, Antje, Heibl, Christoph, Heilmann-Clausen, Jacob, Høiland, Klaus, Kar, Ritwika, Kauserud, Håvard, Kirk, Paul M., Kuyper, Thomas W., Krisai-Greilhuber, Irmgard, Norden, Jenni, Papastefanou, Phillip, Senn-Irlet, Beatrice, and Bässler, Claus
- Abstract
Thermal melanism theory states that dark-colored ectotherm organisms are at an advantage at low temperature due to increased warming. This theory is generally supported for ectotherm animals, however, the function of colors in the fungal kingdom is largely unknown. Here, we test whether the color lightness of mushroom assemblages is related to climate using a dataset of 3.2 million observations of 3,054 species across Europe. Consistent with the thermal melanism theory, mushroom assemblages are significantly darker in areas with cold climates. We further show differences in color phenotype between fungal lifestyles and a lifestyle differentiated response to seasonality. These results indicate a more complex ecological role of mushroom colors and suggest functions beyond thermal adaption. Because fungi play a crucial role in terrestrial carbon and nutrient cycles, understanding the links between the thermal environment, functional coloration and species’ geographical distributions will be critical in predicting ecosystem responses to global warming.
- Published
- 2019
8. Loss of GET pathway orthologs in Arabidopsis thaliana causes root hair growth defects and affects SNARE abundance.
- Author
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Shuping Xing, Mehlhorn, Dietmar Gerald, Wallmeroth, Niklas, Asseck, Lisa Yasmin, Kar, Ritwika, Voss, Alessa, Grefen, Christopher, Denninger, Philipp, Schmidt, Vanessa Aphaia Fiona, Grossmann, Guido, Schwarzländer, Markus, and Stierhof, York-Dieter
- Subjects
ARABIDOPSIS ,PROTEINS ,MAMMALIAN cell cycle ,CYTOKINESIS ,ADENOSINE triphosphatase - Abstract
Soluble N-ethylmaleimide-sensitive factor attachment protein receptor (SNARE) proteins are key players in cellular trafficking and coordinate vital cellular processes, such as cytokinesis, pathogen defense, and ion transport regulation. With few exceptions, SNAREs are tail-anchored (TA) proteins, bearing a C-terminal hydrophobic domain that is essential for their membrane integration. Recently, the Guided Entry of Tail-anchored proteins (GET) pathway was described in mammalian and yeast cells that serve as a blueprint of TA protein insertion [Schuldiner M, et al. (2008) Cell 134(4):634-645; Stefanovic S, Hegde RS (2007) Cell 128(6):1147-1159]. This pathway consists of six proteins, with the cytosolic ATPase GET3 chaperoning the newly synthesized TA protein posttranslationally from the ribosome to the endoplasmic reticulum (ER) membrane. Structural and biochemical insights confirmed the potential of pathway components to facilitate membrane insertion, but the physiological significance in multicellular organisms remains to be resolved. Our phylogenetic analysis of 37 GET3 orthologs from18 different species revealed the presence of two different GET3 clades. We identified and analyzed GET pathway components in Arabidopsis thaliana and found reduced root hair elongation in Atget lines, possibly as a result of reduced SNARE biogenesis. Overexpression of AtGET3a in a receptor knockout (KO) results in severe growth defects, suggesting presence of alternative insertion pathways while highlighting an intricate involvement for the GET pathway in cellular homeostasis of plants. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
9. European mushroom assemblages are darker in cold climates
- Author
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Krah, Franz-Sebastian, Büntgen, Ulf, Schaefer, Hanno, Müller, Jörg, Andrew, Carrie, Boddy, Lynne, Diez, Jeffrey, Egli, Simon, Freckleton, Robert, Gange, Alan C, Halvorsen, Rune, Heegaard, Einar, Heideroth, Antje, Heibl, Christoph, Heilmann-Clausen, Jacob, Høiland, Klaus, Kar, Ritwika, Kauserud, Håvard, Kirk, Paul M, Kuyper, Thomas W, Krisai-Greilhuber, Irmgard, Norden, Jenni, Papastefanou, Phillip, Senn-Irlet, Beatrice, and Bässler, Claus
- Subjects
Europe ,13. Climate action ,Pigmentation ,Climate Change ,15. Life on land ,Agaricales ,Cold Climate ,Ecosystem - Abstract
Thermal melanism theory states that dark-colored ectotherm organisms are at an advantage at low temperature due to increased warming. This theory is generally supported for ectotherm animals, however, the function of colors in the fungal kingdom is largely unknown. Here, we test whether the color lightness of mushroom assemblages is related to climate using a dataset of 3.2 million observations of 3,054 species across Europe. Consistent with the thermal melanism theory, mushroom assemblages are significantly darker in areas with cold climates. We further show differences in color phenotype between fungal lifestyles and a lifestyle differentiated response to seasonality. These results indicate a more complex ecological role of mushroom colors and suggest functions beyond thermal adaption. Because fungi play a crucial role in terrestrial carbon and nutrient cycles, understanding the links between the thermal environment, functional coloration and species' geographical distributions will be critical in predicting ecosystem responses to global warming.
10. European mushroom assemblages are darker in cold climates
- Author
-
Krah, Franz-Sebastian, Büntgen, Ulf, Schaefer, Hanno, Müller, Jörg, Andrew, Carrie, Boddy, Lynne, Diez, Jeffrey, Egli, Simon, Freckleton, Robert, Gange, Alan C., Halvorsen, Rune, Heegaard, Einar, Heideroth, Antje, Heibl, Christoph, Heilmann-Clausen, Jacob, Høiland, Klaus, Kar, Ritwika, Kauserud, Håvard, Kirk, Paul M., Kuyper, Thomas W., Krisai-Greilhuber, Irmgard, Norden, Jenni, Papastefanou, Phillip, Senn-Irlet, Beatrice, and Bässler, Claus
- Subjects
631/158/857 ,13. Climate action ,631/158/851 ,631/326/193/2540 ,article ,15. Life on land ,631/326/193/2539 - Abstract
Thermal melanism theory states that dark-colored ectotherm organisms are at an advantage at low temperature due to increased warming. This theory is generally supported for ectotherm animals, however, the function of colors in the fungal kingdom is largely unknown. Here, we test whether the color lightness of mushroom assemblages is related to climate using a dataset of 3.2 million observations of 3,054 species across Europe. Consistent with the thermal melanism theory, mushroom assemblages are significantly darker in areas with cold climates. We further show differences in color phenotype between fungal lifestyles and a lifestyle differentiated response to seasonality. These results indicate a more complex ecological role of mushroom colors and suggest functions beyond thermal adaption. Because fungi play a crucial role in terrestrial carbon and nutrient cycles, understanding the links between the thermal environment, functional coloration and species’ geographical distributions will be critical in predicting ecosystem responses to global warming.
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