294 results on '"Kaplan DR"'
Search Results
2. Modernization at Magcorp-Coming of Age in the 21STCentury
- Author
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Kaplan, Dr. Howard I., primary, Thayer, Ron, additional, Neelamegham, Dr. R, additional, and Bassani, Ray, additional
- Published
- 2013
- Full Text
- View/download PDF
3. BİR ŞİİR MECMUASINDA YER ALAN DAHA ÖNCE
- Author
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Öğr. Üyesi Orhan Kaplan, Dr., primary
- Published
- 2020
- Full Text
- View/download PDF
4. Periapical actinomycosis: In reply
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Hirshberg, Dr Abraham, Tsesis, Dr Igor, Metzger, Professor Zvi, and Kaplan, Dr Ilana
- Published
- 2003
5. Potent Targeting of the STAT3 Protein in Brain Cancer Stem Cells: A Promising Route for Treating Glioblastoma
- Author
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Carly Griffin, Andriana O. Jouk, Grinshtein N, Ahmed Aman, Hema Artee Luchman, Patrick T. Gunning, Brent D. G. Page, Kagan Kerman, Xin R. Cheng, Samuel Weiss, Anthony J. Veloso, Rima Al-awar, Sina Haftchenary, Vijay M. Shahani, Kaplan Dr, and Dawson Ss
- Subjects
biology ,business.industry ,Organic Chemistry ,Pharmacology ,medicine.disease ,Biochemistry ,Small molecule ,nervous system diseases ,Mediator ,In vivo ,Glioma ,Drug Discovery ,biology.protein ,Medicine ,Phosphorylation ,Stem cell ,business ,STAT3 ,Gene - Abstract
The STAT3 gene is abnormally active in glioblastoma (GBM) and is a critically important mediator of tumor growth and therapeutic resistance in GBM. Thus, for poorly treated brain cancers such as gliomas, astrocytomas, and glioblastomas, which harbor constitutively activated STAT3, a STAT3-targeting therapeutic will be of significant importance. Herein, we report a most potent, small molecule, nonphosphorylated STAT3 inhibitor, 31 (SH-4-54) that strongly binds to STAT3 protein (K D = 300 nM). Inhibitor 31 potently kills glioblastoma brain cancer stem cells (BTSCs) and effectively suppresses STAT3 phosphorylation and its downstream transcriptional targets at low nM concentrations. Moreover, in vivo, 31 exhibited blood-brain barrier permeability, potently controlled glioma tumor growth, and inhibited pSTAT3 in vivo. This work, for the first time, demonstrates the power of STAT3 inhibitors for the treatment of BTSCs and validates the therapeutic efficacy of a STAT3 inhibitor for GBM clinical application.
- Published
- 2013
6. Türkiye'de Kadın Hareketinin Kurumsallaşma Süreci: Kadının Statüsü Genel Müdürlüğü
- Author
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KAPLAN, Dr. Melike
- Subjects
Women’s Movement,Institutional Process of Feminism,KSGM Türkiye’de Kadın Hareketinin Kurumlaşma Süreci: Kadının Statüsü Genel Müdürlüğü (KSGM) ,Kadın Hareketi,Feminizmin Kurumlaşma Süreci,KSGM - Abstract
This study covers the research on the present situation of the women’s studies in Turkey which has become an important issue in recent years. The whole study is a wide-ranging work, resulting from a two year-anthropological fieldwork. KSGM (Directorate General on the Status of Women) as an official institution, and its activities are thoroughly evaluated. This study examines women’s movement based on KSGM. In the research, interviews have been made with women in different institutions (universities and non-governmental organizations, etc.). Even though comparisons have been made in the study, results of the interviews which have been made with eight women who work as experts, civil servants and manager at KSGM is evaluted within the framework of the process of institutionalization of Turkish women’s movement. The article is a of the developments concerning women’s rights starting with a brief assessment of what happened in the Ottoman period and after the Republic. The essay evalutes the process of women’s movement in Turkey by studying KSGM as an example of official institutionalization., Bu çalışma, Türkiye’de son yıllarda önem kazanan kadın çalışmaları alanının, resmi bir kurum örneği olan KSGM’den (Kadının Statüsü Genel Müdürlüğü) yola çıkılarak, günümüzdeki durumunun araştırılmasını kapsamaktadır. Seçmiş olduğumuz kurumda çalışanlarla farklı görünümlere bürünen “kadın çalışmaları” alanı, iki yıl süreyle üniversite ve gönüllü kuruluşlar da dahil farklı kurumlarda yapılan görüşmeler ve gözlemlerle antropolojik alan araştırmasına dayanarak değerlendirilmiştir. Bu nedenle çalışmada zaman zaman karşılaştırmalar yapılsa da, bu yazı kapsamında KSGM’de uzman, memur ve genel müdür statüsünde çalışan toplam sekiz kadınla yapılan görüşme sonuçları Türkiye’de kadın hareketinin kurumlaşma süreci çerçevesinde değerlendirilmiştir. Makale, Osmanlı döneminde kadın konusunda yaşanan gelişmelerin özetiyle başlayarak, Cumhuriyet sonrası yaşananların kısa bir değerlendirmesini sunmaktadır. Çalışma, günümüzde resmi kurumlaşma örneği olan KSGM’den yola çıkarak Türkiye’de kadın hareketi sürecini ve bugün geldiği noktayı değerlendirmektedir.
- Published
- 2015
7. Fakih Bir Sûfî Örneği Olarak Abdulvehhâb eş-Şa'rânî
- Author
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KAPLAN, Dr. Hayri
- Published
- 2014
8. Fahruddîn Er-Râzî'nin Sadruddîn Es-Serahsî'ye Gönderdiği Mektup
- Author
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KAPLAN, Dr. Hayri
- Published
- 2014
9. TAM PROTEZLERİN YAPIMINDA KULLANILAN AKRİLİK REZİNLERİ GÜÇLENDİRME YÖNTEMLERİ
- Author
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KAPLAN, Dr. Rukiye, ÖZÇELİK, Dr. T. Burak, and GÜRBÜZ, Prof. Dr. Ayhan
- Published
- 2014
10. HARFTEN SESE, HARFTEN GÖRÜNTÜYE BÂKÎ’DE SES-AHENK-GÖRÜNTÜ
- Author
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KAPLAN, Dr. Hasan, primary
- Published
- 2015
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11. Platelet Alloimmunity: The Fetal/Neonatal Alloimmune Thrombocytopenia
- Author
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Kaplan, Dr Cécile, primary
- Published
- 2002
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12. Association of neutrotrophin receptor expression and differentiation in human neuroblastoma.
- Author
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Hoehner, JC, Olsen, L, Sandstedt, B, Kaplan, DR, Pahlman, S, Hoehner, JC, Olsen, L, Sandstedt, B, Kaplan, DR, and Pahlman, S
- Published
- 1995
13. Regulation of TrkA and ChAT expression in developing rat basal forebrain: evidence that both exogenous and endogenous NGF regulate differentiation of cholinergic neurons
- Author
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Li, Y, primary, Holtzman, DM, additional, Kromer, LF, additional, Kaplan, DR, additional, Chua-Couzens, J, additional, Clary, DO, additional, Knusel, B, additional, and Mobley, WC, additional
- Published
- 1995
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14. Regulation of neurotrophin receptors during the maturation of the mammalian visual system
- Author
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Allendoerfer, KL, primary, Cabelli, RJ, additional, Escandon, E, additional, Kaplan, DR, additional, Nikolics, K, additional, and Shatz, CJ, additional
- Published
- 1994
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15. Regulated neurotrophin receptor responsiveness during neuronal migrationand early differentiation
- Author
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Knusel, B, primary, Rabin, SJ, additional, Hefti, F, additional, and Kaplan, DR, additional
- Published
- 1994
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16. First International Workshop on Platelets, Endothelial Cells: From Autoimmunity to Immunomodulation
- Author
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Kaplan, Dr C., primary
- Published
- 1993
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17. Integrating Micro Saint, HOS, and Anthropometric Models a New Tool
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Dahl, Susan, primary, Hood, Lori, additional, Laughery, K. Ronald, additional, and Kaplan, Dr. Jonathan, additional
- Published
- 1991
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18. 2004-AMERİKAN ULUSAL ROMATOLOJİ KONGRESİNDE ROMATOİD ARTRİT TEDAVİSİNDEN ALINTILAR.
- Author
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Kaplan, Dr. Mustala, Šahan, Dr. Burak, Sohnazgül, Dr. Emrullah, and Nalbant, Dr. Selim
- Subjects
- *
RHEUMATOLOGY , *CONFERENCES & conventions , *RHEUMATOID arthritis , *ANTI-inflammatory agents , *LEFLUNOMIDE , *DRUGS - Abstract
Annual Congresses of American Collage of Rheumatology (ACR) are the meetings that give guidance totle rheumatologists for the new therapeutic and diagnostic methods. Discussions on therapy of rheumatoid arthritis (RA) with biologic agents took the biggest part of the last 2004 ACR meeting. New biologic agents such as abacept, AMG 714, etc. which currently are not used in clinical practice gave hope for the future. However, there were new approaches for the classical drugs such as nonsteroid antiinflammatory drugs, mainly meloxicam. It has been shown that response to the methotrexate therapy can be observed by using polyglutamates. On the other hand, some studies have shown that leflunomide is not so innocent drug as it has already been thought. Presence of these many studies on RA treatment presented in ACR-2004 showed the existence of both a big effort on this area and lots of unknown. [ABSTRACT FROM AUTHOR]
- Published
- 2005
19. Beautiful smiles made by Dr. Barry Kaplan.
- Author
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Kaplan, Dr. Barry
- Subjects
ROOT canal treatment ,DENTAL specialties - Published
- 2023
20. COPD: A 7-step program to assess and manage your patient.
- Author
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KAPLAN, DR. ALAN
- Subjects
OBSTRUCTIVE lung disease treatment ,SPIROMETRY ,BRONCHODILATOR agents ,OBSTRUCTIVE lung disease diagnosis ,SMOKING cessation ,DISEASE exacerbation ,PREVENTION - Abstract
The article discusses steps for patient assessment to provide care for chronic obstructive pulmonary disease (COPD). Topics include using spirometry before and after a bronchodilator for diagnosis of COPD; treating COPD with non-pharmacologic therapy such as smoking cessation, vaccination and pulmonary rehabilitation; preventing exacerbations of COPD as it will effect quality of life; and treating comorbidities associated with COPD such as inflammation.
- Published
- 2016
21. Die Rolle der hyperämischen Reaktion im Mazester-Bade für die Prognose organischer Nervenkrankheiten und für das Studium des Mechanismus und der Wege der Gefäβinnervation.
- Author
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Wersiloff, Prof., W., Kaplan, Dr., B., and Schugam, Dr., A.
- Published
- 1928
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22. What is a prosthodontist?
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Kaplan, Dr. Barry
- Subjects
ROOT canal treatment ,DENTISTRY ,DENTAL specialties - Published
- 2022
23. Platelet alpha granules contain a growth factor for fibroblasts
- Author
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Kaplan, DR, Chao, FC, Stiles, CD, Antoniades, HN, and Scher, CD
- Abstract
Platelets contain a polypeptide growth factor that stimulates the replication of normal connective tissue cells; this platelet-derived growth factor (PDGF) is released during the clotting process. Human platelets from normal volunteers were disrupted by nitrogen cavitation, and the subcellular organelles were fractionated by ultracentrifugation through a 30%--60% sucrose gradient. Electron microscopy revealed that fraction 7 (density 1.23 g/liter) contained the largest number of alpha granules. The specific activity of platelet fibrinogen, an alpha- granule marker, was also highest in this fraction. The subcellular fractions were assay for the presence of PDGF and for beta- thromboglobulin. PDGF was assayed quantitatively by the stimulation of DNA synthesis in confluent growth-arrested BALB/c-3T3 cells, whereas the concentration of beta-thromboglobulin was determined by radioimmunoassay. The highest concentrations of both PDGF and beta- thromboglobulin were found in the alpha-granule fraction. In contrast, beta-glucuronidase, a lysosomal enzyme, was more diffusely distributed and had its highest specific activity in fractions of lower density than those for PDGS, beta-thromboglobulin, or fibrinogen. The data demonstrate that the alpha granules of platelets provide a unique delivery system for PDGF, a polypeptide hormone with growth-promoting activity for connective tissue cells.
- Published
- 1979
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24. Integrating Micro Saint, HOS, and Anthropometric Models a New Tool
- Author
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Dahl, Susan, Hood, Lori, Laughery, K. Ronald, and Kaplan, Dr. Jonathan
- Abstract
This paper discusses a US Army project to develop an advanced human performance modeling tool by combining the strengths of several well-known existing techniques. The first step is to integrate the human performance features of HOS (Human Operator Simulator) with Micro Saint, a task network modeling tool. The resulting tool, Micro Saint/HOS), will provide human factors and ergonomics professionals with a powerful tool that can be used to quantify and assess the impact of workstation design on the performance of the human operator and the ultimate performance of the system. What MS HOS will lack is the sophisticated graphical capabilities available in today's anthropometric modeling tools. The next step will be to link the dynamic models of human performance and graphically-based anthropometric models of the human.
- Published
- 1991
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25. Anatomischer Befund bei traumatischer Psychose mit Bulbärerscheinungen
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Kaplan, Dr., L., primary and Finkelnburg, Dr., B., additional
- Published
- 1900
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- View/download PDF
26. Die Rolle der hyperämischen Reaktion im Mazester-Bade für die Prognose organischer Nervenkrankheiten und für das Studium des Mechanismus und der Wege der Gefäβinnervation.
- Author
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Wersiloff, Prof., W., primary, Kaplan, Dr., B., additional, and Schugam, Dr., A., additional
- Published
- 1928
- Full Text
- View/download PDF
27. Pourquoi cet homme tousse-t-il et a-t-il le souffle court?
- Author
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Kaplan, Dr Alan
- Published
- 2016
28. Why is this man coughing and short of breath?
- Author
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KAPLAN, DR. ALAN
- Subjects
IDIOPATHIC pulmonary fibrosis ,DYSPNEA ,COUGH ,LUNG cancer ,THROMBOEMBOLISM ,DISEASE exacerbation ,PREVENTION - Abstract
The article presents a case study of a 65-year old patient Jones who reported progressive shortness of breath and a non-productive cough. It mentions that the patient was diagnosed with idiopathic pulmonary fibrosis (IPF) and highlights effectiveness of pirfenidone and nintedanib drugs in the disease. It suggests physicians to manage co-morbidities associated with IPF such as lung cancer and venous thromboembolism, and prevent disease exacerbation.
- Published
- 2016
29. ENVIRONMENT WARS.
- Author
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Kaplan, Dr. Jonathan
- Subjects
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HUMAN behavior , *AGGRESSION (Psychology) , *SOCIAL conflict , *ARCHAEOLOGY , *ANTHROPOLOGY , *ANTHROPOLOGISTS , *COMPARATIVE psychology - Abstract
This article reports that aggressive behavior and conflict between peoples seem evident wherever looks at the landscape of history. Scarcity of water in the 21st century inevitably will lead to terrible conflicts. Every great civilization may be said on good evidence to have failed because it neglected and ultimately destroyed its environment. Current policies in the U.S. seem guaranteed to accelerate this trend, and it seems likely that the U.S. will be one of the shortest world empires in human history. Archaeology is of great value to the self-understanding as a species because it attempts systematically to bring to light material evidence of human behavior.
- Published
- 2004
30. Loss of protein tyrosine phosphatase receptor delta PTPRD increases the number of cortical neurons, impairs synaptic function and induces autistic-like behaviors in adult mice.
- Author
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Cortés BI, Meza RC, Ancatén-González C, Ardiles NM, Aránguiz MI, Tomita H, Kaplan DR, Cornejo F, Nunez-Parra A, Moya PR, Chávez AE, and Cancino GI
- Subjects
- Animals, Mice, Disease Models, Animal, Male, Cerebral Cortex metabolism, Mice, Knockout, Synaptic Transmission physiology, Mice, Inbred C57BL, Female, Receptor-Like Protein Tyrosine Phosphatases, Class 2 metabolism, Receptor-Like Protein Tyrosine Phosphatases, Class 2 genetics, Neurons, Autistic Disorder genetics, Autistic Disorder physiopathology
- Abstract
Background: The brain cortex is responsible for many higher-level cognitive functions. Disruptions during cortical development have long-lasting consequences on brain function and are associated with the etiology of brain disorders. We previously found that the protein tyrosine phosphatase receptor delta Ptprd, which is genetically associated with several human neurodevelopmental disorders, is essential to cortical brain development. Loss of Ptprd expression induced an aberrant increase of excitatory neurons in embryonic and neonatal mice by hyper-activating the pro-neurogenic receptors TrkB and PDGFRβ in neural precursor cells. However, whether these alterations have long-lasting consequences in adulthood remains unknown., Results: Here, we found that in Ptprd+/- or Ptprd-/- mice, the developmental increase of excitatory neurons persists through adulthood, affecting excitatory synaptic function in the medial prefrontal cortex. Likewise, heterozygosity or homozygosity for Ptprd also induced an increase of inhibitory cortical GABAergic neurons and impaired inhibitory synaptic transmission. Lastly, Ptprd+/- or Ptprd-/- mice displayed autistic-like behaviors and no learning and memory impairments or anxiety., Conclusions: These results indicate that loss of Ptprd has long-lasting effects on cortical neuron number and synaptic function that may aberrantly impact ASD-like behaviors., (© 2024. The Author(s).)
- Published
- 2024
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31. Protein translation rate determines neocortical neuron fate.
- Author
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Borisova E, Newman AG, Couce Iglesias M, Dannenberg R, Schaub T, Qin B, Rusanova A, Brockmann M, Koch J, Daniels M, Turko P, Jahn O, Kaplan DR, Rosário M, Iwawaki T, Spahn CMT, Rosenmund C, Meierhofer D, Kraushar ML, Tarabykin V, and Ambrozkiewicz MC
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- Animals, Mice, Transcription Factors metabolism, Transcription Factors genetics, Gene Expression Regulation, Developmental, Proteostasis, Neurogenesis genetics, RNA, Messenger metabolism, RNA, Messenger genetics, 5' Untranslated Regions genetics, Ribosomes metabolism, Ribosomes genetics, Humans, Endoribonucleases metabolism, Endoribonucleases genetics, Cell Differentiation genetics, Neocortex metabolism, Neocortex cytology, Neocortex embryology, Neurons metabolism, Neurons cytology, Protein Biosynthesis, Protein Serine-Threonine Kinases metabolism, Protein Serine-Threonine Kinases genetics, Matrix Attachment Region Binding Proteins metabolism, Matrix Attachment Region Binding Proteins genetics
- Abstract
The mammalian neocortex comprises an enormous diversity regarding cell types, morphology, and connectivity. In this work, we discover a post-transcriptional mechanism of gene expression regulation, protein translation, as a determinant of cortical neuron identity. We find specific upregulation of protein synthesis in the progenitors of later-born neurons and show that translation rates and concomitantly protein half-lives are inherent features of cortical neuron subtypes. In a small molecule screening, we identify Ire1α as a regulator of Satb2 expression and neuronal polarity. In the developing brain, Ire1α regulates global translation rates, coordinates ribosome traffic, and the expression of eIF4A1. Furthermore, we demonstrate that the Satb2 mRNA translation requires eIF4A1 helicase activity towards its 5'-untranslated region. Altogether, we show that cortical neuron diversity is generated by mechanisms operating beyond gene transcription, with Ire1α-safeguarded proteostasis serving as an essential regulator of brain development., (© 2024. The Author(s).)
- Published
- 2024
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32. Single-cell approaches define two groups of mammalian oligodendrocyte precursor cells and their evolution over developmental time.
- Author
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Dennis DJ, Wang BS, Karamboulas K, Kaplan DR, and Miller FD
- Subjects
- Animals, Mice, Cell Differentiation genetics, Oligodendroglia metabolism, Oligodendroglia cytology, Epigenesis, Genetic, Receptor, Platelet-Derived Growth Factor alpha metabolism, Receptor, Platelet-Derived Growth Factor alpha genetics, Transcriptome, Gene Expression Regulation, Developmental, Mice, Inbred C57BL, White Matter metabolism, White Matter cytology, Single-Cell Analysis, Oligodendrocyte Precursor Cells metabolism, Oligodendrocyte Precursor Cells cytology
- Abstract
Here, we used single-cell RNA sequencing (scRNA-seq), single-cell ATAC sequencing (scATAC-seq), and single-cell spatial transcriptomics to characterize murine cortical OPCs throughout postnatal life. During development, we identified two groups of differentially localized PDGFRα
+ OPCs that are transcriptionally and epigenetically distinct. One group (active, or actOPCs) is metabolically active and enriched in white matter. The second (homeostatic, or hOPCs) is less active, enriched in gray matter, and predicted to derive from actOPCs. In adulthood, these two groups are transcriptionally but not epigenetically distinct, and relative to developing OPCs are less active metabolically and have less open chromatin. When adult oligodendrogenesis is enhanced during experimentally induced remyelination, adult OPCs do not reacquire a developmental open chromatin state, and the oligodendrogenesis trajectory is distinct from that seen neonatally. These data suggest that there are two OPC groups subserving distinct postnatal functions and that neonatal and adult OPC-mediated oligodendrogenesis are fundamentally different., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2024 The Author(s). Published by Elsevier Inc. All rights reserved.)- Published
- 2024
- Full Text
- View/download PDF
33. Schwann Cells Are Key Regulators of Corneal Epithelial Renewal.
- Author
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Mirmoeini K, Tajdaran K, Zhang J, Gordon T, Ali A, Kaplan DR, Feinberg K, and Borschel GH
- Subjects
- Animals, Mice, Rats, Cornea innervation, Epithelial Cells, Stem Cells metabolism, Epithelium, Corneal metabolism, Limbus Corneae, Schwann Cells
- Abstract
Purpose: Corneal sensory nerves protect the cornea from injury. They are also thought to stimulate limbal stem cells (LSCs) to produce transparent epithelial cells constantly, enabling vision. In other organs, Schwann cells (SCs) associated with tissue-innervating axon terminals mediate tissue regeneration. This study defines the critical role of the corneal axon-ensheathing SCs in homeostatic and regenerative corneal epithelial cell renewal., Methods: SC localization in the cornea was determined by in situ hybridization and immunohistochemistry with SC markers. In vivo SC visualization and/or ablation were performed in mice with inducible corneal SC-specific expression of tdTomato and/or Diphtheria toxin, respectively. The relative locations of SCs and LSCs were observed with immunohistochemical analysis of harvested genetically SC-prelabeled mouse corneas with LSC-specific antibodies. The correlation between cornea-innervating axons and the appearance of SCs was ascertained using corneal denervation in rats. To determine the limbal niche cellular composition and gene expression changes associated with innervation-dependent epithelial renewal, single-cell RNA sequencing (scRNA-seq) of dissociated healthy, de-epithelized, and denervated cornea limbi was performed., Results: We observed limbal enrichment of corneal axon-associated myelinating and non-myelinating SCs. Induced local genetic ablation of SCs, although leaving corneal sensory innervation intact, markedly inhibited corneal epithelial renewal. scRNA-seq analysis (1) highlighted the transcriptional heterogenicity of cells populating the limbal niche, and (2) identified transcriptional changes associated with corneal innervation and during wound healing that model potential regulatory paracrine interactions between SCs and LSCs., Conclusions: Limbal SCs are required for innervation-dependent corneal epithelial renewal.
- Published
- 2023
- Full Text
- View/download PDF
34. The P-body protein 4E-T represses translation to regulate the balance between cell genesis and establishment of the postnatal NSC pool.
- Author
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Kolaj A, Zahr SK, Wang BS, Krawec T, Kazan H, Yang G, Kaplan DR, and Miller FD
- Subjects
- Cell Differentiation physiology, Neurons metabolism, Processing Bodies, Protein Biosynthesis, Repressor Proteins metabolism, RNA, Messenger genetics, RNA, Messenger metabolism, Nucleocytoplasmic Transport Proteins metabolism, Neural Stem Cells metabolism
- Abstract
Here, we ask how developing precursors maintain the balance between cell genesis for tissue growth and establishment of adult stem cell pools, focusing on postnatal forebrain neural precursor cells (NPCs). We show that these NPCs are transcriptionally primed to differentiate and that the primed mRNAs are associated with the translational repressor 4E-T. 4E-T also broadly associates with other NPC mRNAs encoding transcriptional regulators, and these are preferentially depleted from ribosomes, consistent with repression. By contrast, a second translational regulator, Cpeb4, associates with diverse target mRNAs that are largely ribosome associated. The 4E-T-dependent mRNA association is functionally important because 4E-T knockdown or conditional knockout derepresses proneurogenic mRNA translation and perturbs maintenance versus differentiation of early postnatal NPCs in culture and in vivo. Thus, early postnatal NPCs are primed to differentiate, and 4E-T regulates the balance between cell genesis and stem cell expansion by sequestering and repressing mRNAs encoding transcriptional regulators., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2023 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2023
- Full Text
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35. Nail-associated mesenchymal cells contribute to and are essential for dorsal digit tip regeneration.
- Author
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Mahmud N, Eisner C, Purushothaman S, Storer MA, Kaplan DR, and Miller FD
- Subjects
- Animals, Bone and Bones, Cells, Cultured, Extremities, Mammals, Mesenchymal Stem Cells
- Abstract
Here, we ask why the nail base is essential for mammalian digit tip regeneration, focusing on the inductive nail mesenchyme. We identify a transcriptional signature for these cells that includes Lmx1b and show that the Lmx1b-expressing nail mesenchyme is essential for blastema formation. We use a combination of Lmx1bCreERT2-based lineage-tracing and single-cell transcriptional analyses to show that the nail mesenchyme contributes cells for two pro-regenerative mechanisms. One group of cells maintains their identity and regenerates the new nail mesenchyme. A second group contributes specifically to the dorsal blastema, loses their nail mesenchyme phenotype, acquires a blastema transcriptional state that is highly similar to blastema cells of other origins, and ultimately contributes to regeneration of the dorsal but not ventral dermis and bone. Thus, the regenerative necessity for an intact nail base is explained, at least in part, by a requirement for the inductive nail mesenchyme., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2022 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2022
- Full Text
- View/download PDF
36. Vitamin D Receptor Activation Attenuates Hippo Pathway Effectors and Cell Survival in Metastatic Neuroblastoma.
- Author
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Ladumor Y, Seong BKA, Hallett R, Valencia-Sama I, Adderley T, Wang Y, Kee L, Gont A, Kaplan DR, and Irwin MS
- Subjects
- Animals, Cell Survival, Hippo Signaling Pathway, Humans, Mice, Neoplasm Recurrence, Local, Phosphoproteins genetics, Receptors, Calcitriol genetics, Receptors, Calcitriol metabolism, Transcription Factors genetics, Transcription Factors metabolism, YAP-Signaling Proteins, Neuroblastoma drug therapy, Neuroblastoma genetics, Protein Serine-Threonine Kinases genetics
- Abstract
Survival for high-risk neuroblastoma remains poor. Most patients who recur, present with metastatic disease, and few targetable pathways that govern spread to distant sites are currently known. We previously developed a metastatic mouse model to select cells with enhanced ability to spread to the bone and brain and identified a signature based on differentially expressed genes, which also predicted patient survival. To discover new neuroblastoma therapies, we utilized the Connectivity Map to identify compounds that can reverse this metastatic transcriptional signature and found calcipotriol, a vitamin D3 analog, to be a compound that selectively targets cell lines with enhanced metastatic potential. Calcipotriol treatment of enhanced metastatic, but not parental, cells reduces proliferation and survival via vitamin D receptor (VDR) signaling, increases the expression of RASSF2, a negative regulator of the Hippo signaling pathway, and reduces the levels of the Hippo pathway effectors YAP and TAZ. RASSF2 is required for the effects of calcipotriol and for the reduction of levels and nuclear localization of YAP/TAZ. Migration of the enhanced metastatic cells and YAP/TAZ levels are reduced after calcipotriol treatment and YAP overexpression reduces calcipotriol sensitivity. Furthermore, metastatic cells that overexpress VDR also showed lower tumor burden in vivo., Implications: This newly identified link between VDR signaling and the Hippo pathway could inform treatment strategies for metastatic neuroblastoma., (©2022 American Association for Cancer Research.)
- Published
- 2022
- Full Text
- View/download PDF
37. Restoration of hippocampal neural precursor function by ablation of senescent cells in the aging stem cell niche.
- Author
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Fatt MP, Tran LM, Vetere G, Storer MA, Simonetta JV, Miller FD, Frankland PW, and Kaplan DR
- Subjects
- Aging, Aniline Compounds pharmacology, Animals, Cell Proliferation drug effects, Cellular Senescence drug effects, Dentate Gyrus cytology, Dentate Gyrus metabolism, Female, Hippocampus cytology, Male, Mice, Mice, Inbred C57BL, Neural Stem Cells cytology, Neurogenesis drug effects, Spatial Memory drug effects, Sulfonamides pharmacology, Cellular Senescence physiology, Neural Stem Cells metabolism, Stem Cell Niche physiology
- Abstract
Senescent cells are responsible, in part, for tissue decline during aging. Here, we focused on CNS neural precursor cells (NPCs) to ask if this is because senescent cells in stem cell niches impair precursor-mediated tissue maintenance. We demonstrate an aging-dependent accumulation of senescent cells, largely senescent NPCs, within the hippocampal stem cell niche coincident with declining adult neurogenesis. Pharmacological ablation of senescent cells via acute systemic administration of the senolytic drug ABT-263 (Navitoclax) caused a rapid increase in NPC proliferation and neurogenesis. Genetic ablation of senescent cells similarly activated hippocampal NPCs. This acute burst of neurogenesis had long-term effects in middle-aged mice. One month post-ABT-263, adult-born hippocampal neuron numbers increased and hippocampus-dependent spatial memory was enhanced. These data support a model where senescent niche cells negatively influence neighboring non-senescent NPCs during aging, and ablation of these senescent cells partially restores neurogenesis and hippocampus-dependent cognition., (Copyright © 2021 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2022
- Full Text
- View/download PDF
38. A Shared Transcriptional Identity for Forebrain and Dentate Gyrus Neural Stem Cells from Embryogenesis to Adulthood.
- Author
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Borrett MJ, Innes BT, Tahmasian N, Bader GD, Kaplan DR, and Miller FD
- Subjects
- Adult, Animals, Dentate Gyrus, Embryonic Development, Humans, Lateral Ventricles, Mammals, Neurogenesis physiology, Prosencephalon, Neural Stem Cells
- Abstract
Adult neural stem cells (NSCs) reside in two distinct niches in the mammalian brain, the ventricular-subventricular zone (V-SVZ) of the forebrain lateral ventricles and the subgranular zone (SGZ) of the hippocampal dentate gyrus. They are thought to be molecularly distinct since V-SVZ NSCs produce inhibitory olfactory bulb (OB) interneurons and SGZ NSCs excitatory dentate granule neurons. Here, we have asked whether this is so by directly comparing V-SVZ and SGZ NSCs from embryogenesis to adulthood using single-cell transcriptional data. We show that the embryonic radial glial precursor (RP) parents of these two NSC populations are very similar, but differentially express a small cohort of genes involved in glutamatergic versus GABAergic neurogenesis. These different RPs then undergo a similar gradual transition to a dormant adult NSC state over the first three postnatal weeks. This dormancy state involves transcriptional shutdown of genes that maintain an active, proliferative, prodifferentiation state and induction of genes involved in sensing and regulating their niche environment. Moreover, when reactivated to generate adult-born progeny, both populations reacquire a development-like state and re-express proneurogenic genes. Thus, V-SVZ and SGZ NSCs share a common transcriptional state throughout their lifespans and transition into and out of dormancy via similar trajectories., (Copyright © 2022 Borrett et al.)
- Published
- 2022
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39. The DEAD-box helicase DDX56 is a conserved stemness regulator in normal and cancer stem cells.
- Author
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Pryszlak M, Wiggans M, Chen X, Jaramillo JE, Burns SE, Richards LM, Pugh TJ, Kaplan DR, Huang X, Dirks PB, and Pearson BJ
- Subjects
- Adult Stem Cells metabolism, Animals, Cell Line, Tumor, Cell Lineage, Cell Nucleolus metabolism, Cell Proliferation, Cell Self Renewal, Cell Survival, Cerebral Cortex cytology, DEAD-box RNA Helicases genetics, Drosophila metabolism, Drosophila Proteins metabolism, Gene Expression Regulation, Neoplastic, Genomics, Glioblastoma genetics, Glioblastoma pathology, HEK293 Cells, Humans, Mice, Models, Biological, Neoplastic Stem Cells pathology, Neural Stem Cells metabolism, Planarians cytology, Planarians metabolism, RNA Interference, Ribosome Subunits metabolism, Treatment Outcome, Up-Regulation genetics, DEAD-box RNA Helicases metabolism, Neoplastic Stem Cells metabolism
- Abstract
Across the animal kingdom, adult tissue homeostasis is regulated by adult stem cell activity, which is commonly dysregulated in human cancers. However, identifying key regulators of stem cells in the milieu of thousands of genes dysregulated in a given cancer is challenging. Here, using a comparative genomics approach between planarian adult stem cells and patient-derived glioblastoma stem cells (GSCs), we identify and demonstrate the role of DEAD-box helicase DDX56 in regulating aspects of stemness in four stem cell systems: planarians, mouse neural stem cells, human GSCs, and a fly model of glioblastoma. In a human GSC line, DDX56 localizes to the nucleolus, and using planarians, when DDX56 is lost, stem cells dysregulate expression of ribosomal RNAs and lose nucleolar integrity prior to stem cell death. Together, a comparative genomic approach can be used to uncover conserved stemness regulators that are functional in both normal and cancer stem cells., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2021 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2021
- Full Text
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40. LRIG1-Mediated Inhibition of EGF Receptor Signaling Regulates Neural Precursor Cell Proliferation in the Neocortex.
- Author
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Jeong D, Lozano Casasbuenas D, Gengatharan A, Edwards K, Saghatelyan A, Kaplan DR, Miller FD, and Yuzwa SA
- Subjects
- Animals, Animals, Newborn, Cell Proliferation, Cell Self Renewal, Embryo, Mammalian cytology, Embryonic Development, Mice, Mice, Knockout, Neurogenesis, ErbB Receptors metabolism, Membrane Glycoproteins metabolism, Neocortex cytology, Nerve Tissue Proteins metabolism, Neural Stem Cells cytology, Neural Stem Cells metabolism, Signal Transduction
- Abstract
Here, we ask how neural stem cells (NSCs) transition in the developing neocortex from a rapidly to a slowly proliferating state, a process required to maintain lifelong stem cell pools. We identify LRIG1, known to regulate receptor tyrosine kinase signaling in other cell types, as a negative regulator of cortical NSC proliferation. LRIG1 is expressed in murine cortical NSCs as they start to proliferate more slowly during embryogenesis and then peaks postnatally when they transition to give rise to a portion of adult NSCs. Constitutive or acute loss of Lrig1 in NSCs over this developmental time frame causes stem cell expansion due to increased proliferation. LRIG1 controls NSC proliferation by associating with and negatively regulating the epidermal growth factor receptor (EGFR). These data support a model in which LRIG1 dampens the stem cell response to EGFR ligands within the cortical environment to slow their proliferation as they transition to postnatal adult NSCs., Competing Interests: Declaration of Interests The authors declare no competing interests., (Copyright © 2020 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2020
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- View/download PDF
41. Glioma-derived IL-33 orchestrates an inflammatory brain tumor microenvironment that accelerates glioma progression.
- Author
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De Boeck A, Ahn BY, D'Mello C, Lun X, Menon SV, Alshehri MM, Szulzewsky F, Shen Y, Khan L, Dang NH, Reichardt E, Goring KA, King J, Grisdale CJ, Grinshtein N, Hambardzumyan D, Reilly KM, Blough MD, Cairncross JG, Yong VW, Marra MA, Jones SJM, Kaplan DR, McCoy KD, Holland EC, Bose P, Chan JA, Robbins SM, and Senger DL
- Subjects
- Animals, Brain Neoplasms mortality, Carcinogenesis, Cell Nucleus metabolism, Cytokines metabolism, Glioblastoma metabolism, Glioblastoma mortality, Glioblastoma pathology, Glioma mortality, Humans, Inflammation, Killer Cells, Natural metabolism, Killer Cells, Natural pathology, Macrophages metabolism, Macrophages pathology, Mice, Mice, SCID, Microglia, Survival Analysis, T-Lymphocytes metabolism, T-Lymphocytes pathology, Tumor Microenvironment immunology, Brain Neoplasms metabolism, Brain Neoplasms pathology, Glioma metabolism, Glioma pathology, Interleukin-33 metabolism
- Abstract
Despite a deeper molecular understanding, human glioblastoma remains one of the most treatment refractory and fatal cancers. It is known that the presence of macrophages and microglia impact glioblastoma tumorigenesis and prevent durable response. Herein we identify the dual function cytokine IL-33 as an orchestrator of the glioblastoma microenvironment that contributes to tumorigenesis. We find that IL-33 expression in a large subset of human glioma specimens and murine models correlates with increased tumor-associated macrophages/monocytes/microglia. In addition, nuclear and secreted functions of IL-33 regulate chemokines that collectively recruit and activate circulating and resident innate immune cells creating a pro-tumorigenic environment. Conversely, loss of nuclear IL-33 cripples recruitment, dramatically suppresses glioma growth, and increases survival. Our data supports the paradigm that recruitment and activation of immune cells, when instructed appropriately, offer a therapeutic strategy that switches the focus from the cancer cell alone to one that includes the normal host environment.
- Published
- 2020
- Full Text
- View/download PDF
42. Influence of Incentive Design and Organizational Characteristics on Wellness Participation and Health Outcomes.
- Author
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Grossmeier J, Mangen DJ, Anderson DR, Gingerich SB, Mitchell RJ, Imboden MT, Kaplan GD, Gascon GM, Serxner SA, and Bodak T
- Subjects
- Body Mass Index, Humans, Outcome Assessment, Health Care, Retrospective Studies, Health Promotion, Motivation, Occupational Health, Organizational Culture
- Abstract
Objective: To explore how changing incentive designs influence wellness participation and health outcomes., Methods: Aggregated retrospective data were evaluated using cluster analysis to group 174 companies into incentive design types. Numerous statistical models assessed between-group differences in wellness participation, earning incentives, and over-time differences in health outcomes., Results: Four incentive design groups based on requirements for earning incentives were identified. The groups varied in support for and participation in wellness initiatives within each company. All four design types were associated with improved low density lipoprotein (LDL) (P < 0.01), three with improved blood pressure (P < 0.001), and two with improved fasting glucose (P < 0.03). No incentive plan types were associated with improved body mass index (BMI), but designs predominantly focused on health outcomes (eg, Outcomes-Focused) exhibited a significant increase over time in BMI risk., Conclusion: Incentive design and organizational characteristics impact population-level participation and health outcomes.
- Published
- 2020
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- View/download PDF
43. Single-Cell Profiling Shows Murine Forebrain Neural Stem Cells Reacquire a Developmental State when Activated for Adult Neurogenesis.
- Author
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Borrett MJ, Innes BT, Jeong D, Tahmasian N, Storer MA, Bader GD, Kaplan DR, and Miller FD
- Subjects
- Animals, Cell Differentiation, Mice, Neural Stem Cells metabolism, Neurogenesis genetics, Prosencephalon physiopathology
- Abstract
The transitions from developing to adult quiescent and activated neural stem cells (NSCs) are not well understood. Here, we use single-cell transcriptional profiling and lineage tracing to characterize these transitions in the murine forebrain. We show that the two forebrain NSC parental populations, embryonic cortex and ganglionic eminence radial precursors (RPs), are highly similar even though they make glutamatergic versus gabaergic neurons. Both RP populations progress linearly to transition from a highly active embryonic to a dormant adult stem cell state that still shares many similarities with embryonic RPs. When adult NSCs of either embryonic origin become reactivated to make gabaergic neurons, they acquire a developing ganglionic eminence RP-like identity. Thus, transitions from embryonic RPs to adult NSCs and back to neuronal progenitors do not involve fundamental changes in cell identity, but rather reflect conversions between activated and dormant NSC states that may be determined by the niche environment., Competing Interests: Declarations of Interests The authors have no conflicts to declare., (Copyright © 2020 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2020
- Full Text
- View/download PDF
44. Peripheral Nerve Single-Cell Analysis Identifies Mesenchymal Ligands that Promote Axonal Growth.
- Author
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Toma JS, Karamboulas K, Carr MJ, Kolaj A, Yuzwa SA, Mahmud N, Storer MA, Kaplan DR, and Miller FD
- Subjects
- Axons, Ligands, Peripheral Nerves, Schwann Cells, Nerve Regeneration, Single-Cell Analysis
- Abstract
Peripheral nerves provide a supportive growth environment for developing and regenerating axons and are essential for maintenance and repair of many non-neural tissues. This capacity has largely been ascribed to paracrine factors secreted by nerve-resident Schwann cells. Here, we used single-cell transcriptional profiling to identify ligands made by different injured rodent nerve cell types and have combined this with cell-surface mass spectrometry to computationally model potential paracrine interactions with peripheral neurons. These analyses show that peripheral nerves make many ligands predicted to act on peripheral and CNS neurons, including known and previously uncharacterized ligands. While Schwann cells are an important ligand source within injured nerves, more than half of the predicted ligands are made by nerve-resident mesenchymal cells, including the endoneurial cells most closely associated with peripheral axons. At least three of these mesenchymal ligands, ANGPT1, CCL11, and VEGFC, promote growth when locally applied on sympathetic axons. These data therefore identify an unexpected paracrine role for nerve mesenchymal cells and suggest that multiple cell types contribute to creating a highly pro-growth environment for peripheral axons., (Copyright © 2020 Toma et al.)
- Published
- 2020
- Full Text
- View/download PDF
45. (H)Elping nerve growth factor: Elp1 inhibits TrkA's phosphatase to maintain retrograde signaling.
- Author
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Kaplan DR and Mobley WC
- Subjects
- Humans, Nerve Growth Factor genetics, Neurogenesis, Phosphoric Monoester Hydrolases, Receptor, trkA genetics, Receptor, trkA metabolism, Signal Transduction, Dysautonomia, Familial
- Abstract
Nerve growth factor (NGF) regulates many aspects of neuronal biology by retrogradely propagating signals along axons to the targets of those axons. How this occurs when axons contain a plethora of proteins that can silence those signals has long perplexed the neurotrophin field. In this issue of the JCI, Li et al. suggest an answer to this vexing problem, while exploring why the Elp1 gene that is mutated in familial dysautonomia (FD) causes peripheral neuropathy. They describe a distinctive function of Elp1 as a protein that is required to sustain NGF signaling by blocking the activity of its phosphatase that shuts off those signals. This finding helps explain the innervation deficits prominent in FD and reveals a unique role for Elp1 in the regulation of NGF-dependent TrkA activity.
- Published
- 2020
- Full Text
- View/download PDF
46. Methylglyoxal couples metabolic and translational control of Notch signalling in mammalian neural stem cells.
- Author
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Rodrigues DC, Harvey EM, Suraj R, Erickson SL, Mohammad L, Ren M, Liu H, He G, Kaplan DR, Ellis J, and Yang G
- Subjects
- 3' Untranslated Regions, Animals, Brain cytology, Brain metabolism, Cell Differentiation, Cell Line, Female, Glyceraldehyde-3-Phosphate Dehydrogenases metabolism, HEK293 Cells, Humans, Mice, Neurogenesis genetics, Protein Biosynthesis, RNA, Messenger metabolism, Receptor, Notch1 genetics, Signal Transduction genetics, Brain growth & development, Gene Expression Regulation, Developmental, Neural Stem Cells metabolism, Pyruvaldehyde metabolism, Receptor, Notch1 metabolism
- Abstract
Gene regulation and metabolism are two fundamental processes that coordinate the self-renewal and differentiation of neural precursor cells (NPCs) in the developing mammalian brain. However, little is known about how metabolic signals instruct gene expression to control NPC homeostasis. Here, we show that methylglyoxal, a glycolytic intermediate metabolite, modulates Notch signalling to regulate NPC fate decision. We find that increased methylglyoxal suppresses the translation of Notch1 receptor mRNA in mouse and human NPCs, which is mediated by binding of the glycolytic enzyme GAPDH to an AU-rich region within Notch1 3'UTR. Interestingly, methylglyoxal inhibits the enzymatic activity of GAPDH and engages it as an RNA-binding protein to suppress Notch1 translation. Reducing GAPDH levels or restoring Notch signalling rescues methylglyoxal-induced NPC depletion and premature differentiation in the developing mouse cortex. Taken together, our data indicates that methylglyoxal couples the metabolic and translational control of Notch signalling to control NPC homeostasis.
- Published
- 2020
- Full Text
- View/download PDF
47. Acquisition of a Unique Mesenchymal Precursor-like Blastema State Underlies Successful Adult Mammalian Digit Tip Regeneration.
- Author
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Storer MA, Mahmud N, Karamboulas K, Borrett MJ, Yuzwa SA, Gont A, Androschuk A, Sefton MV, Kaplan DR, and Miller FD
- Subjects
- Animals, Cell Lineage, Cells, Cultured, Extremities embryology, Extremities injuries, Female, Male, Mesenchymal Stem Cells metabolism, Mice, Mice, Inbred C57BL, Mice, Inbred NOD, Mice, Knockout, Mice, SCID, Single-Cell Analysis, Transcriptome, Cell Differentiation, Extremities physiology, Gene Expression Regulation, Developmental, Mesenchymal Stem Cells cytology, Receptors, Platelet-Derived Growth Factor physiology, Regeneration
- Abstract
Here, we investigate the origin and nature of blastema cells that regenerate the adult murine digit tip. We show that Pdgfra-expressing mesenchymal cells in uninjured digits establish the regenerative blastema and are essential for regeneration. Single-cell profiling shows that the mesenchymal blastema cells are distinct from both uninjured digit and embryonic limb or digit Pdgfra-positive cells. This unique blastema state is environmentally determined; dermal fibroblasts transplanted into the regenerative, but not non-regenerative, digit express blastema-state genes and contribute to bone regeneration. Moreover, lineage tracing with single-cell profiling indicates that endogenous osteoblasts or osteocytes acquire a blastema mesenchymal transcriptional state and contribute to both dermis and bone regeneration. Thus, mammalian digit tip regeneration occurs via a distinct adult mechanism where the regenerative environment promotes acquisition of a blastema state that enables cells from tissues such as bone to contribute to the regeneration of other mesenchymal tissues such as the dermis., Competing Interests: Declaration of Interests The authors declare no competing interests., (Copyright © 2019 Elsevier Inc. All rights reserved.)
- Published
- 2020
- Full Text
- View/download PDF
48. The Protein Tyrosine Phosphatase Receptor Delta Regulates Developmental Neurogenesis.
- Author
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Tomita H, Cornejo F, Aranda-Pino B, Woodard CL, Rioseco CC, Neel BG, Alvarez AR, Kaplan DR, Miller FD, and Cancino GI
- Subjects
- Alleles, Animals, Cell Differentiation, Cell Proliferation, Cells, Cultured, Cerebral Cortex embryology, Embryo, Mammalian cytology, Gene Knockdown Techniques, HEK293 Cells, Humans, Matrix Attachment Region Binding Proteins metabolism, Mice, Inbred C57BL, Neural Stem Cells metabolism, Neurons cytology, Neurons metabolism, Phosphorylation, Receptor-Like Protein Tyrosine Phosphatases, Class 2 deficiency, Signal Transduction, T-Box Domain Proteins metabolism, Transcription Factors metabolism, Neurogenesis, Receptor-Like Protein Tyrosine Phosphatases, Class 2 metabolism
- Abstract
PTPRD is a receptor protein tyrosine phosphatase that is genetically associated with neurodevelopmental disorders. Here, we asked whether Ptprd mutations cause aberrant neural development by perturbing neurogenesis in the murine cortex. We show that loss of Ptprd causes increases in neurogenic transit-amplifying intermediate progenitor cells and cortical neurons and perturbations in neuronal localization. These effects are intrinsic to neural precursor cells since acute Ptprd knockdown causes similar perturbations. PTPRD mediates these effects by dephosphorylating receptor tyrosine kinases, including TrkB and PDGFRβ, and loss of Ptprd causes the hyperactivation of TrkB and PDGFRβ and their downstream MEK-ERK signaling pathway in neural precursor cells. Moreover, inhibition of aberrant TrkB or MEK activation rescues the increased neurogenesis caused by knockdown or homozygous loss of Ptprd. These results suggest that PTPRD regulates receptor tyrosine kinases to ensure appropriate numbers of intermediate progenitor cells and neurons, suggesting a mechanism for its genetic association with neurodevelopmental disorders., (Copyright © 2019 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2020
- Full Text
- View/download PDF
49. Translating neural stem cells to neurons in the mammalian brain.
- Author
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Zahr SK, Kaplan DR, and Miller FD
- Subjects
- Animals, Humans, Mammals, Brain physiopathology, Neural Stem Cells metabolism, Neurons metabolism
- Abstract
The mammalian neocortex underlies our perception of sensory information, performance of motor activities, and higher-order cognition. During mammalian embryogenesis, radial glial precursor cells sequentially give rise to diverse populations of excitatory cortical neurons, followed by astrocytes and oligodendrocytes. A subpopulation of these embryonic neural precursors persists into adulthood as neural stem cells, which give rise to inhibitory interneurons and glia. Although the intrinsic mechanisms instructing the genesis of these distinct progeny have been well-studied, most work to date has focused on transcriptional, epigenetic, and cell-cycle control. Recent studies, however, have shown that posttranscriptional mechanisms also regulate the cell fate choices of transcriptionally primed neural precursors during cortical development. These mechanisms are mediated primarily by RNA-binding proteins and microRNAs that coordinately regulate mRNA translation, stability, splicing, and localization. Together, these findings point to an extensive network of posttranscriptional control and provide insight into both normal cortical development and disease. They also add another layer of complexity to brain development and raise important biological questions for future investigation.
- Published
- 2019
- Full Text
- View/download PDF
50. Comprehensive genomic profiling of glioblastoma tumors, BTICs, and xenografts reveals stability and adaptation to growth environments.
- Author
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Shen Y, Grisdale CJ, Islam SA, Bose P, Lever J, Zhao EY, Grinshtein N, Ma Y, Mungall AJ, Moore RA, Lun X, Senger DL, Robbins SM, Wang AY, MacIsaac JL, Kobor MS, Luchman HA, Weiss S, Chan JA, Blough MD, Kaplan DR, Cairncross JG, Marra MA, and Jones SJM
- Subjects
- Adult, Aged, Aged, 80 and over, Animals, Apoptosis, Brain Neoplasms genetics, Case-Control Studies, Cell Proliferation, DNA Methylation, Drug Resistance, Neoplasm, Female, Gene Expression Profiling, Glioblastoma genetics, Humans, Male, Mice, Mice, SCID, Middle Aged, Neoplastic Stem Cells metabolism, Transcriptome, Tumor Cells, Cultured, Whole Genome Sequencing, Xenograft Model Antitumor Assays, Biomarkers, Tumor genetics, Brain Neoplasms pathology, Gene Expression Regulation, Neoplastic, Genomics methods, Glioblastoma pathology, Neoplastic Stem Cells pathology, Tumor Microenvironment genetics
- Abstract
Glioblastoma multiforme (GBM) is the most deadly brain tumor, and currently lacks effective treatment options. Brain tumor-initiating cells (BTICs) and orthotopic xenografts are widely used in investigating GBM biology and new therapies for this aggressive disease. However, the genomic characteristics and molecular resemblance of these models to GBM tumors remain undetermined. We used massively parallel sequencing technology to decode the genomes and transcriptomes of BTICs and xenografts and their matched tumors in order to delineate the potential impacts of the distinct growth environments. Using data generated from whole-genome sequencing of 201 samples and RNA sequencing of 118 samples, we show that BTICs and xenografts resemble their parental tumor at the genomic level but differ at the mRNA expression and epigenomic levels, likely due to the different growth environment for each sample type. These findings suggest that a comprehensive genomic understanding of in vitro and in vivo GBM model systems is crucial for interpreting data from drug screens, and can help control for biases introduced by cell-culture conditions and the microenvironment in mouse models. We also found that lack of MGMT expression in pretreated GBM is linked to hypermutation, which in turn contributes to increased genomic heterogeneity and requires new strategies for GBM treatment., Competing Interests: The authors declare no conflict of interest.
- Published
- 2019
- Full Text
- View/download PDF
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