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Outbreaks of African filoviruses often have high mortality, including more than 11,000 deaths among 28,562 cases during the West Africa Ebola outbreak of 2014-2016. Numerous studies have investigated the factors that contributed to individual filovirus outbreaks, but there has been little quantitative synthesis of this work. In addition, the ways in which the typical causes of filovirus outbreaks differ from other zoonoses remain poorly described. In this study, we quantify factors associated with 45 outbreaks of African filoviruses (ebolaviruses and Marburg virus) using a rubric of 48 candidate causal drivers. For filovirus outbreaks, we reviewed700 peer-reviewed and gray literature sources and developed a list of the factors reported to contribute to each outbreak (

Background: Response to the unprecedented coronavirus disease 2019 (COVID-19) outbreak needs to be augmented in Texas, United States, where the first 5 cases were reported on March 6, 2020, and were rapidly followed by an exponential rise within the next few weeks. This study aimed to determine the ongoing trend and upcoming infection status of COVID-19 in county levels of Texas. Methods: Data were extracted from the following sources: published literature, surveillance, unpublished reports, and websites of Texas Department of State Health Services (DSHS), Natality report of Texas, and WHO Coronavirus Disease (COVID-19) Dashboard. The 4-compartment Susceptible-Exposed-Infectious-Removal (SEIR) mathematical model was used to estimate the current trend and future prediction of basic reproduction number and infection cases in Texas. Because the basic reproduction number is not sufficient to predict the outbreak, we applied the Continuous-Time Markov Chain (CTMC) model to calculate the probability of the COVID-19 outbreak. Results: The estimated mean basic reproduction number of COVID-19 in Texas is predicted to be 2.65 by January 31, 2021. Our model indicated that the third wave might occur at the beginning of May 2021, which will peak at the end of June 2021. This prediction may come true if the current spreading situation/level persists, i.e., no clinically effective vaccine is available, or this vaccination program fails for some reason in this area. Conclusion: Our analysis indicates an alarming ongoing and upcoming infection rate of COVID-19 at county levels in Texas, thereby emphasizing the promotion of more coordinated and disciplined actions by policy-makers and the population to contain its devastating impact.

Seasonality and contact patterns affect the dynamics of disease outbreaks. Recent studies applied to deterministic and stochastic epidemic models with periodic environments have shown that the average basic reproduction number is not sufficient to predict an outbreak. We extend these studies to a time-nonhomogeneous stochastic vector–host model with demographic variability and periodic fluctuations to better understand the combined effects of variability and periodicity on the risk of a disease outbreak. A multitype branching process approximation is used to calculate the probability of a disease outbreak. The approximation follows from the solution of a system of differential equations which is derived from the backward Kolmogorov differential equations. This approximation shows that the risk of a disease outbreak is also periodic and depends on the particular time at which either an infected vector or an infected host is introduced into the susceptible vector and susceptible host populations. Numerical examples with periodic transmission rates for vector and host illustrate the times at which there is the greatest probability of an outbreak and also demonstrate how these times are related to the peak transmission rates for vector or host.

Factors such as seasonality and spatial connectivity affect the spread of an infectious disease. Accounting for these factors in infectious disease models provides useful information on the times and locations of greatest risk for disease outbreaks. In this investigation, stochastic multi-patch epidemic models are formulated with seasonal and demographic variability. The stochastic models are used to investigate the probability of a disease outbreak when infected individuals are introduced into one or more of the patches. Seasonal variation is included through periodic transmission and dispersal rates. Multi-type branching process approximation and application of the backward Kolmogorov differential equation lead to an estimate for the probability of a disease outbreak. This estimate is also periodic and depends on the time, the location, and the number of initial infected individuals introduced into the patch system as well as the magnitude of the transmission and dispersal rates and the connectivity between patches. Examples are given for seasonal transmission and dispersal in two and three patches.

Seasonal changes in temperature, humidity, and rainfall affect vector survival and emergence of mosquitoes and thus impact the dynamics of vector-borne disease outbreaks. Recent studies of deterministic and stochastic epidemic models with periodic environments have shown that the average basic reproduction number is not sufficient to predict an outbreak. We extend these studies to time-nonhomogeneous stochastic dengue models with demographic variability wherein the adult vectors emerge from the larval stage vary periodically. The combined effects of variability and periodicity provide a better understanding of the risk of dengue outbreaks. A multitype branching process approximation of the stochastic dengue model near the disease-free periodic solution is used to calculate the probability of a disease outbreak. The approximation follows from the solution of a system of differential equations derived from the backward Kolmogorov differential equation. This approximation shows that the risk of a disease outbreak is also periodic and depends on the particular time and the number of the initial infected individuals. Numerical examples are explored to demonstrate that the estimates of the probability of an outbreak from that of branching process approximations agree well with that of the continuous-time Markov chain. In addition, we propose a simple stochastic model to account for the effects of environmental variability on the emergence of adult vectors from the larval stage.