5,645 results on '"Kalpana P"'
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2. Spatial intra-tumour heterogeneity and treatment-induced genomic evolution in oesophageal adenocarcinoma: implications for prognosis and therapy
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Sandra Brosda, Lauren G. Aoude, Vanessa F. Bonazzi, Kalpana Patel, James M. Lonie, Clemence J. Belle, Felicity Newell, Lambros T. Koufariotis, Venkateswar Addala, Marjan M. Naeini, AGITG DOCTOR Investigators, John V. Pearson, Lutz Krause, Nicola Waddell, and Andrew P. Barbour
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Tumour evolution ,Whole-genome sequencing ,Treatment impact ,Oesophageal adenocarcinoma ,Genetics ,Medicine ,QH426-470 - Abstract
Abstract Background Oesophageal adenocarcinoma (OAC) is a highly heterogeneous cancer with poor survival. Standard curative treatment is chemotherapy with or without radiotherapy followed by oesophagectomy. Genomic heterogeneity is a feature of OAC and has been linked to treatment resistance. Methods Whole-genome sequencing data from 59 treatment-naïve and 18 post-treatment samples from 29 OAC patients was analysed. Twenty-seven of these were enrolled in the DOCTOR trial, sponsored by the Australasian Gastro-Intestinal Trials Group. Two biopsies from each treatment-naïve tumour were assessed to define ‘shared’ (between both samples) and ‘private’ (present in one sample) mutations. Results Mutational signatures SBS2/13 (APOBEC) and SBS3 (BRCA) were almost exclusively detected in private mutation populations of treatment-naïve tumours. Patients presenting these signatures had significantly worse disease specific survival. Furthermore, mutational signatures associated with platinum-based chemotherapy treatment as well as high platinum enrichment scores were only detected in post-treatment samples. Additionally, clones with high putative neoantigen binding scores were detected in some treatment-naïve samples suggesting immunoediting of clones. Conclusions This study demonstrates the high intra-tumour heterogeneity in OAC, as well as indicators for treatment-induced changes during tumour evolution. Intra-tumour heterogeneity remains a problem for successful treatment strategies in OAC.
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- 2024
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3. Flexible PMN-PT/rGO/PVDF-TrFE based composites for triboelectric and piezoelectric energy harvesting
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Satyabati Das, Manila Mallik, Kalpana Parida, Nilotpala Bej, and Jayashree Baral
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Nanogenerator ,Piezoelectric ,Triboelectric ,Energy harvesting ,Materials of engineering and construction. Mechanics of materials ,TA401-492 ,Industrial electrochemistry ,TP250-261 - Abstract
Flexible piezoelectric nanogenerator (PENG) and triboelectric nanogenerators (TENG) have gained prodigious attention due to the increasing demand of nano and micro energy for driving of miniaturized electronic devices, sensors, and various internet of things. The key challenges that are currently in focus are material selection and simple fabrication techniques for improved electrical performance along with good mechanical properties and flexibility. Herein, a ferroelectric polymer, poly(vinylidenefluoride-co-trifluoroethyne) (PVDF-TrFE), is chosen as a flexible material due to its promising prospect for energy harvesting. To improve the performance, a ceramic material, 0.65Pb(Mg1/3Nb2/3)O3–0.35PbTiO3 (PMN-PT), with very high piezoelectric properties has been selected as the reinforcement. Further, reduced graphene oxide has been added as a conducting filler to promote charge conduction. A remarkable enhancement in output voltage of nearly 3 fold is achieved in PVDF-TrFE/PMN-PT (PP) polymer composite as compared to the base polymer PVDF-TrFE (P) TENG device. Furthermore, the PVDF-TrFE/rGO/PMN-PT (PPR) as a PENG illustrates a great improvement in output current of the order of 2 as compared to the pristine polymer. The maximum output voltage as shown by the TENG is 200 V and the maximum current that is shown by the PENG is 30 µA. Therefore, the fabricated PMN-PT based PVDF-TrFE nanogenerators have an immense prospect for applications in self-powered systems.
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- 2024
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4. Comparison of major carbon offset standards for soil carbon projects in Australian grazing lands
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Kalpana Pudasaini, John Rolfe, Thakur Bhattarai, and Kerry Walsh
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Soil carbon ,grazing land ,cost-effectiveness ,Emission Reduction Fund ,Verified Carbon Standard ,Gold Standard ,Environmental sciences ,GE1-350 - Abstract
AbstractDespite the potential role of soil carbon offset schemes to reduce greenhouse gas emissions, there are concerns that the rules for assessment, monitoring, and operation are barriers to engagement. This may explain why there is low participation of Australian landholders in soil carbon projects. This study reviews the literature on three leading voluntary carbon standards and methods to assess their suitability for developing soil carbon projects in grazing systems in Australia. The soil carbon method of each standard was analysed based on several criteria: scope, eligibility/applicability, newness and additionality, permanency, baselines and quantification methodology, environmental sustainability, safeguard mechanism, and crediting period. A hypothetical grazing case study in Central Queensland, Australia’s premier beef cattle region, was used to model the cost-effectiveness and potential returns from establishing soil carbon projects under the three standards. Results show that credits created under the Emissions Reduction Fund in Australia generate higher returns for soil carbon projects compared to the Verified Carbon Standard and Gold Standard. This is largely due to a higher market price for soil carbon credits in the Emissions Reduction Fund, reflecting more robust standards of assessment and verification. While assessment costs for credits were higher in the international schemes, returns were lower because prices reflected less rigorous standards.
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- 2024
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5. Role of mitochondria in inflammatory lung diseases
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Venkata Ramireddy Narala, Sahithi Reddy Narala, Parasuraman Aiya Subramani, Kalpana Panati, and Narasaiah Kolliputi
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inflammation ,lung diseases ,mitochondrial dysfunction ,oxidative stress ,therapeutic targets ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Mitochondria play a significant and varied role in inflammatory lung disorders. Mitochondria, known as the powerhouse of the cell because of their role in producing energy, are now recognized as crucial regulators of inflammation and immunological responses. Asthma, chronic obstructive pulmonary disease, and acute respiratory distress syndrome are characterized by complex interactions between immune cells, inflammatory substances, and tissue damage. Dysfunctional mitochondria can increase the generation of reactive oxygen species (ROS), triggering inflammatory pathways. Moreover, mitochondrial failure impacts cellular signaling, which in turn affects the expression of molecules that promote inflammation. In addition, mitochondria have a crucial role in controlling the behavior of immune cells, such as their activation and differentiation, which is essential in the development of inflammatory lung diseases. Their dynamic behavior, encompassing fusion, fission, and mitophagy, also impacts cellular responses to inflammation and oxidative stress. Gaining a comprehensive understanding of the intricate correlation between mitochondria and lung inflammation is essential in order to develop accurate treatment strategies. Targeting ROS generation, dynamics, and mitochondrial function may offer novel approaches to treating inflammatory lung diseases while minimizing tissue damage. Additional investigation into the precise contributions of mitochondria to lung inflammation will provide significant knowledge regarding disease mechanisms and potential therapeutic approaches. This review will focus on how mitochondria in the lung regulate these processes and their involvement in acute and chronic lung diseases.
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- 2024
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6. Experience of Mindfulness Meditations Based on Stress Reduction among Undergraduate Nursing Students, Chitwan, Nepal
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Archana Pandey Bista, Jamuna Adhikari, Bimala Kumari Shah, Kalpana Poudel, Bhagwati KC, and Apsara Pandey
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Public aspects of medicine ,RA1-1270 - Abstract
Background: Undergraduate nursing students are frequently vulnerable to stress during their education with a high rate of attrition. Mindfulness Mediations based on Stress Reductions have been found to promote psychological well-being and mental health among nursing students. Therefore, the objective of the study was to explore the experiences of Mindfulness among undergraduate nursing students. Methods: Qualitative Hermeneutic Phenomenology research design was adopted. Data were collected from under graduate nursing students from Chitwan Medical College, Institute of Medicine who had been practicing Mindfulness Meditation for 6 weeks. The duration of data collection was January to June 2022. Data were collected after obtaining ethical approval from Nepal Health Research Council. Focused Group Discussions were conducted to collect data by the researcher using the Focused Group Discussion guide in Nepali language. A total of three Focused Group Discussions was carried out among 12 participants in each Focused Group Discussion with a total of 36 participants. Data were analyzed by thematic analysis technique based on Giorgi’s qualitative data analysis technique. Results: Five developed themes were stress managed well in daily life and during examination time, present moment awareness and positivity, self-realization of inner peace and more self-acceptance, and feeling of developed future role for advocating mindfulness meditations. Conclusions: Mindfulness-based mediations have been found effective strategies among undergraduate nursing for the management of stress during daily living and during examinations, development of self-realization, increase inner peace, self-acceptance and developed skills for future role for advocating mindfulness meditations. Keywords: Mindfulness meditations; nursing students; stress.
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- 2024
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7. Transition to professional practice: Perspectives of new nursing graduates of Nepal
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Sital Gautam, Anju Poudel, Kalpana Paudyal, and Mangal Maya Prajapati
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New nursing graduates ,Professional practice ,Transition ,Nursing ,RT1-120 - Abstract
Abstract Background Internationally, the transition from student nurse to practicing nurse is recognized as being the most stressful period. Yet very little is known about how new nursing graduates perceive this transition in Nepal. The study aimed to explore new nursing graduates’ perceptions of the transition to professional practice. Methods A qualitative descriptive methodology was used. In-depth semi-structured interviews were conducted with 10 purposively recruited participants from two private hospitals in Nepal. Data were analyzed using inductive thematic analysis. The Consolidated Criteria for Reporting Qualitative Research (COREQ) guidelines were used to report the findings of this study. Results New nursing graduates perceived the transition to professional practice as an intense experience. Inductive thematic analysis yielded four intrinsically linked themes that encompassed new nursing graduates’ transition experiences: ‘getting hit by reality’, ‘losing confidence’, ‘feeling unsupported’, and ‘gathering strengths.’ The theme ‘getting hit by reality’ included three sub-themes: ‘gap between theory and practice,’ ‘no protective shield,’ and ‘plethora of responsibilities’, which explains nurses’ initial encounter with real-world practice. The theme ‘losing confidence’ contained three sub-themes: ‘being fearful,’ ‘being ignored,’ and ‘being accused,’ which describes how nurses started losing confidence as they confronted the real side of the profession. The theme ‘feeling unsupported’ included two sub-themes: ‘left without guidance,’ and ‘limited support from seniors,’ which explains how nurses perceived their work environment. The theme ‘gathering strength’ contained two sub-themes: ‘reflecting’ and ‘asking for help,’ which describes how nurses coped with the challenges related to the transition. Conclusion To facilitate the transition to practice, educational institutions must impart to students a realistic understanding of the transition process, address the theory-practice gap, and collaborate with hospitals. Similarly, hospitals should have realistic expectations from new nurses, assign work according to their capabilities, and allow them sufficient time for role integration. Likewise, well-conceived detailed orientation, mentorship or preceptorship programs, and regular professional development programs are vital to easing the transition. Furthermore, establishing and maintaining a supportive work culture, which promotes equity, respect, and safety among employees, is crucial for positive transition experiences.
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- 2023
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8. Dissecting WASH Assessment Tools and Recommending a Comprehensive Tool for Indian Healthcare Facilities
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Trivedi P, Bhavsar P, Kalpana P, Patel K, Das T, Yasobant S, and Saxena D
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wash ,ipc ,sdgs ,universal health coverage ,Public aspects of medicine ,RA1-1270 - Abstract
Poonam Trivedi,1 Priya Bhavsar,2 Pachillu Kalpana,2,3 Krupali Patel,4 Tanmoy Das,5 Sandul Yasobant,1,2,6 Deepak Saxena1,2,6 1Department of Public Health Science, Indian Institute of Public Health Gandhinagar (IIPHG), Gandhinagar, Gujarat, India; 2Centre for One Health Education, Research & Development (COHERD), Indian Institute of Public Health Gandhinagar (IIPHG), Gandhinagar, Gujarat, India; 3Centre for Development Research (ZEF), University of Bonn, Bonn, Germany; 4Parul Institute of Public Health, Parul University, Waghodia, Gujarat, India; 5Terre des hommes Foundation, Kolkata, West Bengal, India; 6School of Epidemiology & Public Health, Datta Meghe Institute of Medical Sciences (DMIMS), Wardha, Maharashtra, IndiaCorrespondence: Deepak Saxena, Indian Institute of Public Health Gandhinagar, Opp. Air Force Head Quarters, Nr. Lekawada, Gandhinagar, Gujarat, 382042, India, Email ddeepak72@iiphg.orgAbstract: Providing adequate Water Sanitation and Hygiene (WASH) in Health Care Facilities (HCFs) has many benefits, including achieving Sustainable Development Goals (SDGs) and Universal Health Coverage (UHC). However, there is a significant shortage of statistics on the status of WASH in Healthcare Facilities (WinHCF), resulting in roadblocks in developing improvement strategies. Further, there is a lack of detailed comparison of WASH components covered in available tools against the standards. The present study aims to dissect the national and international tools for WASH assessment in HCFs to suggest comprehensive WASH indicators. The databases like PubMed, Scopus, ScopeMed, Cochrane and Google Scholar were used to extract the available tools. The assessment process, methodology, and components of national and various international tools were compared and synthesized. A total of seven tools, namely WASH FIT 2, Facet, SARA, SPA, TOOL BOX-II, CDC and Kayakalp, were compared on eight components: water, sanitation, hand hygiene, healthcare waste, environmental cleaning and hygiene, infrastructure, workforce management, policy and protocols. Although most tools have covered the same indicators, the methodology and definitions differ. Few of the tools fail to capture the basic indicators defined by Joint Monitoring Programme (JMP). The critical indicators of policy and protocols are only covered in WASH FIT 2, Kayakalp, and TOOL BOX-II. Likewise, most tools fail to capture the indicator of cleaning, IPC practices and climate resilience. The present review also highlighted the limitations of selected tools regarding definitions, methodology and implementation. Hence, based on the review findings, a comprehensive short tool has been developed to monitor WASH in HCF of India. It comprises all the essential fundamental indicators identified from various tools, and recommended by the JMP service ladder with proper definitions. This tool can be helpful for hospital staff and managers for the routine monitoring of WASH in HCFs and improve the quality of care and IPC practices in HCFs.Keywords: WASH, IPC, SDGs, universal health coverage, assesment
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- 2023
9. A Prospective Study on Fetomaternal Outcomes in Asymptomatic Chronic Hepatitis B Pregnant Women in a Tertiary Level Hospital
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Upma Saxena, Kalpana Pandey, Manisha Bais Thakur, Shilpee Kumar, Asmita Saran, and Sidarrth Prasad
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antiviral ,hepatitis b virus ,mother to child transmission ,Medicine - Abstract
Introduction: Hepatitis B surface Antigen (HBsAGg) prevalence among pregnant women in India is between 0.9-3.1%. The most important factor in determining the prevalence is transmission from asymptomatic chronic Hepatitis B Virus (HBV) mother to newborn. This study was done to observe antiviral treatment and fetomaternal outcome in asymptomatic HBV mothers. Aim: To study fetomaternal outcomes in asymptomatic chronic hepatitis B pregnant women. Materials and Methods: This prospective cohort study enrolled 125 HBsAg seropositive singleton pregnancy over a period of 18 months from October 2020 to March 2022 at Department of Obstetrics and Gynaecology, VMMC and Safdarjung Hospital, New Delhi, India. Chronic Hepatitis B (CHB) was diagnosed when HBsAg, HBeAg or HBV DNA was present and IgM antiHBc was absent. Tenofovir was started in consultation with the Gastroenterologist in women with HBeAg positivity or with high HBV DNA titre ≥200,000 IU/mL or Alanine Transaminase (ALT)> two times the Upper Normal Limit (UNL). All women were followed with Liver Function Test (LFT) till delivery and six weeks postpartum and their fetomaternal outcome were noted. The p-value 2 times the ULN can replace the need of HBV DNA titres for initiation of antiviral therapy in India.
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- 2023
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10. SARS-CoV-2 and chronic myeloid leukemia: a systematic review
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Elrazi A. Ali, Anas Al-Sadi, Qusai Al-maharmeh, Eihab A. Subahi, Amulya Bellamkonda, Madhumati Kalavar, Kalpana Panigrahi, Awni Alshurafa, and Mohamed A. Yassin
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SARS-CoV-2 variants ,COVID-19 ,SARS-CoV-2 ,chronic myelocytic leukemia (CML) ,chronic myeloid leukemia ,Medicine (General) ,R5-920 - Abstract
IntroductionSevere acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is the virus causing the coronavirus disease of 2019. The disease has caused millions of deaths since the first pandemic at the end of 2019. Immunocompromised individuals are more likely to develop severe infections. Numerous mutations had developed in SARS-CoV-2, resulting in strains (Alfa Beta Delta Omicron) with varying degrees of virulence disease severity. In CML (chronic myeloid leukemia) patients, there is a lot of controversy regarding the effect of the treatment on the patient outcome. Some reports suggested potential better outcomes among patients with CML, likely due to the use of TKI; other reports showed no significant effects. Additionally, it is unknown how much protection immunization provides for cancer patients.MethodIn accordance with the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) standards, we conducted a systematic review. Retrospective, prospective studies, reviews, case series, and case reports of chronic myeloid leukemia patients aged above 18 years who had SARS-CoV-2 infection were included. English literature was screened using PubMed, SCOPUS, and Google Scholar. Search terms include chronic myeloid leukemia, chronic myelogenous leukemia, and SARS-CoV-2 and Coronavirus disease 2019 (COVID-19). We searched the reference lists of the included studies for any new articles. The search included all articles published up to April 20, 2023. The review is registered in PROSPERO (registration number CRD42022326674).ResultsWe reviewed 33 articles of available published literature up to April 2023 and collected data from a total of 682 CML patients with COVID-19. Most patients were in the chronic phase, seven were in the accelerated phase, and eight were in the blast phase. Disease severity was classified according to WHO criteria. Mortality was seen in 45 patients, and there were no reports of thrombotic events. Two hundred seventy-seven patients were in the era before vaccination; among them, eight were in the intensive care unit (ICU), and mortality was 30 (11%). There were 405 patients after the era of vaccination; among them, death was reported in 15 (4%) patients and ICU in 13 patients.Limitations and conclusionThe major limitation of this review is the lack of details about the use or hold of TKIs during SARS-CoV-2 infection. Additionally, after the appearance of the different variants of the SARS-CoV-2 virus, few studies mentioned the variant of the virus, which makes it difficult to compare the outcome of the other variants of the SARS-CoV-2 virus in patients with CML. Despite the limitations of the study, CML patients with COVID-19 have no significant increase in mortality compared to other hematological malignancy. Hematological cancers are associated with an increased risk of thrombosis, which is expected to increase in patients with COVID-19. However, patient with CML has not been reported to have a significant increase in thrombosis risk. The available data indicates that COVID-19’s effect on patients with chronic myeloid leukemia (CML) still needs to be better understood due to the limited data.Systematic review registrationhttps://www.crd.york.ac.uk/PROSPERO/display_record.php? RecordID:326674.
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- 2024
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11. Mycorrhizal fungus Serendipita indica-associated acid phosphatase rescues the phosphate nutrition with reduced arsenic uptake in the host plant under arsenic stress
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Aparna Singh Kushwaha, Imran Ahmad, Sneh Lata, Kalpana Padalia, Akhilesh Kumar Yadav, and Manoj Kumar
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AMF ,Enzyme Kinetics ,Mineral nutrition ,Organic acid ,Phosphate transporter ,Solanum lycopersicum ,Environmental pollution ,TD172-193.5 ,Environmental sciences ,GE1-350 - Abstract
Symbiotic interactions play a vital role in maintaining the phosphate (Pi) nutrient status of host plants and providing resilience during biotic and abiotic stresses. Serendipita indica, a mycorrhiza-like fungus, supports plant growth by transporting Pi to the plant. Despite the competitive behaviour of arsenate (AsV) with Pi, the association with S. indica promotes plant growth under arsenic (As) stress by reducing As bioavailability through adsorption, accumulation, and precipitation within the fungus. However, the capacity of S. indica to enhance Pi accumulation and utilization under As stress remains unexplored. Axenic studies revealed that As supply significantly reduces intracellular ACPase activity in S. indica, while extracellular ACPase remains unaffected. Further investigations using Native PAGE and gene expression studies confirmed that intracellular ACPase (isoform2) is sensitive to As, whereas extracellular ACPase (isoform1) is As-insensitive. Biochemical analysis showed that ACPase (isoform1) has a Km of 0.5977 µM and Vmax of 0.1945 Unit/min. In hydroponically cultured tomato seedlings, simultaneous inoculation of S. indica with As on the 14thday after seed germination led to hyper-colonization, increased root/shoot length, biomass, and induction of ACPase expression and secretion under As stress. Arsenic-treated S. indica colonized groups (13.33 µM As+Si and 26.67 µM As+Si) exhibited 8.28–19.14 and 1.71–3.45-fold activation of ACPase in both rhizospheric media and root samples, respectively, thereby enhancing Pi availability in the surrounding medium under As stress. Moreover, S. indica (13.33 µM As+Si and 26.67 µM As+Si) significantly improved Pi accumulation in roots by 7.26 and 9.46 times and in shoots by 4.36 and 8.85 times compared to the control. Additionally, S. indica induced the expression of SiPT under As stress, further improving Pi mobilization. Notably, fungal colonization also restricted As mobilization from the hydroponic medium to the shoot, with a higher amount of As (191.01 ppm As in the 26.67 µM As+Si group) accumulating in the plant's roots. The study demonstrates the performance of S. indica under As stress in enhancing Pi mobilization while limiting As uptake in the host plant. These findings provide the first evidence of the As-Pi interaction in the AM-like fungus S. indica, indicating reduced As uptake and regulation of PHO genes (ACPase and SiPT genes) to increase Pi acquisition. These data also lay the foundation for the rational use of S. indica in agricultural practices.
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- 2024
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12. Multi-omic features of oesophageal adenocarcinoma in patients treated with preoperative neoadjuvant therapy
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Marjan M. Naeini, Felicity Newell, Lauren G. Aoude, Vanessa F. Bonazzi, Kalpana Patel, Guy Lampe, Lambros T. Koufariotis, Vanessa Lakis, Venkateswar Addala, Olga Kondrashova, Rebecca L. Johnston, Sowmya Sharma, Sandra Brosda, Oliver Holmes, Conrad Leonard, Scott Wood, Qinying Xu, Janine Thomas, Euan Walpole, G. Tao Mai, Stephen P. Ackland, Jarad Martin, Matthew Burge, Robert Finch, Christos S. Karapetis, Jenny Shannon, Louise Nott, Robert Bohmer, Kate Wilson, Elizabeth Barnes, John R. Zalcberg, B. Mark Smithers, John Simes, Timothy Price, Val Gebski, Katia Nones, David I. Watson, John V. Pearson, Andrew P. Barbour, and Nicola Waddell
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Science - Abstract
Abstract Oesophageal adenocarcinoma is a poor prognosis cancer and the molecular features underpinning response to treatment remain unclear. We investigate whole genome, transcriptomic and methylation data from 115 oesophageal adenocarcinoma patients mostly from the DOCTOR phase II clinical trial (Australian New Zealand Clinical Trials Registry-ACTRN12609000665235), with exploratory analysis pre-specified in the study protocol of the trial. We report genomic features associated with poorer overall survival, such as the APOBEC mutational and RS3-like rearrangement signatures. We also show that positron emission tomography non-responders have more sub-clonal genomic copy number alterations. Transcriptomic analysis categorises patients into four immune clusters correlated with survival. The immune suppressed cluster is associated with worse survival, enriched with myeloid-derived cells, and an epithelial-mesenchymal transition signature. The immune hot cluster is associated with better survival, enriched with lymphocytes, myeloid-derived cells, and an immune signature including CCL5, CD8A, and NKG7. The immune clusters highlight patients who may respond to immunotherapy and thus may guide future clinical trials.
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- 2023
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13. A novel variant in the tropomyosin 3 gene presenting as an adult-onset distal myopathy - a case report
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Zhiyong Chen, Monica Saini, Jasmine Shimin Koh, Gareth Zigui Lim, Nancy Jiaojiao Dang, Kalpana Prasad, Swee Hoon Koh, Karine Su Shan Tay, Ming Lee, Helen Lisa Ong, Yi Zhao, Ankit Tandon, and Josiah Yui Huei Chai
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Congenital myopathy ,Distal myopathy ,Tropomyosin ,TPM3 ,Case report ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract Background We report a patient with a novel c.737 C > T variant (p.Ser246Leu) of the TPM3 gene presenting with adult-onset distal myopathy. Case presentation A 35-year-old Chinese male patient presented with a history of progressive finger weakness. Physical examination revealed differential finger extension weakness, together with predominant finger abduction, elbow flexion, ankle dorsiflexion and toe extension weakness. Muscle MRI showed disproportionate fatty infiltration of the glutei, sartorius and extensor digitorum longus muscles without significant wasting. Muscle biopsy and ultrastructural examination showed a non-specific myopathic pattern without nemaline or cap inclusions. Genetic sequencing revealed a novel heterozygous p.Ser246Leu variant (c.737C>T) of the TPM3 gene which is predicted to be pathogenic. This variant is located in the area of the TPM3 gene where the protein product interacts with actin at position Asp25 of actin. Mutations of TPM3 in these loci have been shown to alter the sensitivity of thin filaments to the influx of calcium ions. Conclusion This report further expands the phenotypic spectrum of myopathies associated with TPM3 mutations, as mutations in TPM3 had not previously been reported with adult-onset distal myopathy. We also discuss the interpretation of variants of unknown significance in patients with TPM3 mutations and summarise the typical muscle MRI findings of patients with TPM3 mutations.
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- 2023
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14. Antioxidant properties and cytotoxic effects of Oxalis corniculata on human Hepatocarcinoma (Hep-G2) cell line: an in vitro and in silico evaluation
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Sachin Gudasi, Shankar Gharge, Rahul Koli, and Kalpana Patil
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Oxalis corniculata ,Antioxidant ,Hep-G2 cell-line ,Molecular docking ,Cytotoxic effect ,Therapeutics. Pharmacology ,RM1-950 ,Pharmacy and materia medica ,RS1-441 - Abstract
Abstract Background Oxalis corniculata is a well-known medicinal plant used in folk medicine for the management of many diseases. The aim is to determine the physico-chemical properties, microscopic study, phytochemical properties, in-silico, in-vitro antioxidant and anticancer activity on human Hepatocarcinoma (Hep-G2) cell line of O. corniculata plant extract. Results Microscopical study reaveals that presence of pericyclic fibres, starch gains, trichomes etc, and phytochemical screening is carried to find out secondary metabolites. The molecular docking study concluded that some of the phytocompounds showed inhibition of epidermal growth factor receptor tyrosine kinase domain (PDB ID: 1M17) inhibitor. Furthermore, ADMET and drug likeness study hints some of phytocompounds may act as lead for anticancer drug discovery and development. Among selected phytocompounds, compound apigenin possesses − 7.90 kcal/mol as compared to standard drug doxorubicin possesses − 7.63 kcal/mol against the epidermal growth factor receptor tyrosine kinase. The plant extract shown antioxidant activities based on the different tests were performed. The hydroalcoholic plant extracts were found to be selectively cytotoxic in vitro to human Hepatocarcinoma (Hep-G2) cell line with IC50values 34.494 ± 0.42 µg/ml and EAF showed at IC50 value 30.245 ± 0.58 µg/ml of the cells were inhibited at the concentration of 50 µg/ml as compared with standard doxorubicin at IC50 value 24.8939 ± 0.25 µg/ml, respectively. Conclusion The present study concluded that O. corniculata possesses potential antioxidant and cytotoxic properties based upon the computer aided drug design models and in-vitro activity.
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- 2023
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15. Cosmological constant as Hyper Geometric function in fivedimensional space-time
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Satish T. Rathod and Kalpana Pawar
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kaluza-klein space-time in five-dimension ,perfect fluid ,hypergeometric function ,variable cosmological constant λ = λ(t) and gravitational constant g = g(t) ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Chemical engineering ,TP155-156 ,Physics ,QC1-999 - Abstract
In this paper, we have studied the Einstein Field equation in Kaluza-Klein space-time in five dimension with the metric dS^2 = dt^2 − A^2(dx^2 + dy^2 + dz^2)− B^2dψ^2 under the assumption that B = αt, where α = Constant and scale factor satisfying the relation R^4 = A^3B with perfect fluid having energy momentum tensor Tij = (ρ + p)vivj − pgij In this paper, we have assumed that G = 1/t and we have found the value of cosmological constant Λ is a function time t in terms of hyper geometric function.
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- 2023
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16. The oesophageal adenocarcinoma tumour immune microenvironment dictates outcomes with different modalities of neoadjuvant therapy – results from the AGITG DOCTOR trial and the cancer evolution biobank
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James M. Lonie, Sandra Brosda, Vanessa F. Bonazzi, Lauren G. Aoude, Kalpana Patel, Ian Brown, Sowmya Sharma, Guy Lampe, Venkateswar Addala, Lambros T. Koufariotis, Scott Wood, Nicola Waddell, Riccardo Dolcetti, and Andrew P. Barbour
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oesophageal adenocarcinoma ,tumour microenvironment ,neoadjuvant therapy ,survival ,treatment response ,Immunologic diseases. Allergy ,RC581-607 - Abstract
A plateau in treatment effect can be seen for the current ‘one-size-fits-all’ approach to oesophageal adenocarcinoma (OAC) management using neoadjuvant chemoradiotherapy (nCRT) or chemotherapy (nCT). In OAC, the tumour microenvironment (TME) is largely immunosuppressed, however a subgroup of patients with an immune-inflamed TME exist and show improved outcomes. We aimed to understand the overall immune-based mechanisms underlying treatment responses and patient outcomes in OAC, and in relation to neoadjuvant therapy modality. This study included 107 patients; 68 patients were enrolled in the Australian Gastro-Intestinal Trials Group sponsored DOCTOR Trial, and 38 patients were included from the Cancer Evolution Biobank. Matched pre-treatment and post-treatment tumour biopsies were used to perform multi-modality analysis of the OAC TME including NanoString mRNA expression analysis, multiplex and single colour immunohistochemistry (IHC), and peripheral blood mononuclear cell analysis of tumour-antigen specific T cell responses. Patients with the best clinicopathological outcomes and survival had an immune-inflamed TME enriched with anti-tumour immune cells and pathways. Those with the worst survival showed a myeloid T regulatory cell enriched TME, with decreased CD8+ cell infiltration and increased pro-tumour immune cells. Multiplex IHC analysis identified that high intra-tumoural infiltration of CD8+ cells, and low infiltration with CD163+ cells was associated with improved survival. High tumour core CD8+ T cell infiltration, and a low tumour margin infiltration of CD163+ cells was also associated with improved survival. nCRT showed improved survival compared with nCT for patients with low CD8+, or high CD163+ cell infiltration. Poly-functional T cell responses were seen with tumour-antigen specific T cells. Overall, our study supports the development of personalised therapeutic approaches based on the immune microenvironment in OAC. Patients with an immune-inflamed TME show favourable outcomes regardless of treatment modality. However, in those with an immunosuppressed TME with CD163+ cell infiltration, treatment with nCRT can improve outcomes. Our findings support previous studies into the TME of OAC and with more research, immune based biomarker selection of treatment modality may lead in improved outcomes in this deadly disease.
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- 2023
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17. Virology and Molecular Pathogenesis of Coronavirus Disease 2019: An Update
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Kalpana Panati, Lokesh V Timmana, Venkatramana Reddy AT, Rajeswara Reddy Saddala, and Venkata Ramireddy Narala
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Medicine (General) ,R5-920 - Published
- 2022
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18. Effect of Group Psycho-Educational Interventions on Child birth fear and Child birth Self-efficacy among Primiparous women
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Archana Pandey Bista, Chandrakala Shrama, Uma Shrestha, Punjita Timalsina, Kavita Devkota, Kalpana Piya, and Beena Neupane
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Public aspects of medicine ,RA1-1270 - Abstract
Background: Child birth related fear and low self-efficacy for child birth found common among primiparous women. Antenatal group psycho-educational interventions have been used as important strategies to address child birth fear and self-efficacy. Thus, this study aimed to find out the status of child birth fear among antenatal women and effect of group psycho-educational interventions among primiparous women. Methods:One group pretest-posttest design was adopted. Total 307 primigravida women attending antenatal outpatient department of two hospitals within Kathmandu valley were selected through purposive sampling technique. Data was collected from March to July 2020. Child birth fear was assessed by using validated tool i.e.Wijma Delivery Expectancy/Experience Questionnaire (W-DEQ) and Child birth self-efficacy was assessed by using childbirth self- efficacy tool. Primigravida women with moderate level of child-birth fear, were intervened for group psycho-education based on PRIME Model by nurses who were research team members. Paired t-test was used to compare differences in mean scores on child birth fear and child birth self-efficacy before and after intervention. Results: Moderate level of child birth fear was found among 24.8% of participants. Low child-birth self-efficacy was found among 42.0% participants. The overall mean score before providing group psycho-educational interventions to experimental group on child-birth fear was 54.0±2.09 and on child birth self-efficacy was 78.0±28.64 with p
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- 2023
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19. IAP standard treatment guidelines
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Kalpana Panda
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Medicine - Published
- 2024
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20. Family support and well-being programme (FSWP): A specialized family strengthening psychosocial services for parents of children in conflict with law
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Kavita V Jangam, Aasim Ur Rehman Ganie, Kalpana Purushothaman, Priyanka P Nambiar, and John Vijay Sagar Kommu
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family programme ,juvenile justice ,mental health ,parental involvement ,social reintegration ,Medicine - Abstract
Background: A multidimensional family support and well-being programme (FSWP) was initiated to support the families of children in conflict with law (CICL) and strengthen their participation in the integration process. This programme aims to successfully reintegrate children into the family and build parental capacity to manage them. This study presents the overview of the multidimensional FSWP initiated in an observation home, facility for CICLs, Bengaluru, a metropolitan city of India. Methods and Materials: The team of psychiatric social workers systematically delivered the family support programme to promote families' involvement at multiple levels (individual, relationships, community, and societal) for successful reintegration of children in communities. The preliminary data about the participants was collected using strengths and difficulties questionnaire and parent interview schedule. Results: The programme activities consisted of engaging parents and family members in the parenting management training programme, addressing their psychosocial issues, identifying resources for postrelease rehabilitation and promotive interventions with children and their parents. The FSWP activities are developed to increase positive outcomes like favorable behavioral changes in children and emotional regulation, frequent participation and support of parents in the trial and rehabilitation process, and encouraging parental involvement in for successful community reintegration and placements of children. Conclusion: The family characteristics are integrally related to delinquency and practioners need to integrate such factors to improve parenting behaviors and enhance positive relationships between families and children.
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- 2022
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21. Investigation of kinetic and thermodynamic parameters approaches to non-isothermal pyrolysis of mustard stalk using model-free and master plots methods
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Kalpana Patidar, Ajit Singathia, Manish Vashishtha, Vikas Kumar Sangal, and Sushant Upadhyaya
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Mustard stalk ,Thermogravimetric analysis ,Pyrolysis ,Isoconversional methods ,Thermodynamics ,Materials of engineering and construction. Mechanics of materials ,TA401-492 ,Energy conservation ,TJ163.26-163.5 - Abstract
Present work based on thermogravimetric analysis (TGA) to decipher in detail the pyrolysis of mustard stalk (MS) for investigating its potential for bioenergy feedstock at three heating rates (5, 10, and 20 °C/min). The thermal degradation behaviors of MS were carried out at three heating rates (5, 10, and 20 °C/min). The kinetic and thermodynamic parameters were examined using model-free isoconversional Flynn- Wall-Ozawa (FWO), Kissinger-Akahira-Sunose (KAS) model. The obtained activation energy for pyrolysis of MS using FWO and KAS to be 132.47 and 130.62 kJ/mol. Kissinger method was used to compute pre-exponential factor found to be in the range of 105 to 1016 s−1 at different heating rates. The average ΔH was 127.70, and 125.8 kJ/mol and ΔG is 127.74 and 127.87 kJ/mol from FWO and KAS respectively, all ΔH positive indicated endothermic nature. The Coats-Redfern approach was used to estimate the thermal degradation reaction mechanism, which revealed that the diffusion model was best suited to reflect the degradation process involving both exothermic and endothermic reactions. The analysis can help augment the experimental studies, and physicochemical characterization revealed its fuel characteristic since MS is sustainable and promising biomass for alternative processes in terms of waste management strategies.
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- 2022
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22. αAu2S nanoparticles: Fungal-mediated synthesis, structural characterization and bioassay
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Asad Syed, Marzouq H. Al Saedi, Ali H. Bahkali, Abdallah M. Elgorgan, Mahesh Kharat, Kalpana Pai, John Pichtel, and Absar Ahmad
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gold sulfide ,biosynthesis ,humicola sp ,promastigote ,cytotoxicity ,hemolysis ,Science ,Chemistry ,QD1-999 - Abstract
Luminescent nanoparticles synthesized via bio-based protocols that generate nanoparticles having different chemical compositions along with other functionalities (size and morphology) have received huge attention. We have focused our research on gold sulfide nanoparticles (Au2S NPs) and have biosynthesized these NPs using the fungus Humicola sp. The nanoparticles were characterized by Transmission Electron Microscopy, which showed spherical morphology of Au2S. UV–Visible-NIR spectrophotometry, luminescence spectrophotometry, Selected Area Electron Diffraction, Energy Dispersive Analysis of X-rays, and X-ray diffraction were performed. FTIR confirmed that the fungal metabolites including biomolecules secreted in the reaction medium are primarily responsible for nanoparticle synthesis and stabilization. The fungus reduced the precursor solution (HAuCl4 and Na2SO3) and at the same time capped them with secreted biomolecules. The anti-leishmanial activity of Au2S NPs was determined against L. donovani promastigote (Ag83 strain). Au2S NPs displayed less cytotoxicity towards both normal and cancer (Daudi, ZR-75-1) cell lines. Hemocompatibility was determined via hemolysis assays. This novel fungal-based system demonstrates an economical and environmentally benign process for biosynthesis of Au2S nanoparticles which may find application in bioimaging and labeling studies.
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- 2022
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23. Formulation and Evaluation of Quality Parameters of Effervescent Granules from the Potent Antioxidant between Two Variants of the Adaptogenic Herb Ocimum tenuiflorum L.
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Kalpana Parajuli-Baral
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Technology ,Medicine ,Science - Abstract
Ocimum tenuiflorum L. is found throughout semitropical and tropical parts of Southeast Asia. In Nepal, O. tenuiflorum L. is popular with two variants: Krishna Tulsi consisting of purple-colored leaves and Sri Tulsi consisting of green-colored leaves. O. tenuiflorum L. is considered the queen of herbs and is a traditionally and clinically proven medicinal herb for its application and efficacy. However, no commercial pharmaceutical preparations of O. tenuiflorum L. are available using effervescent vehicles. Therefore, the present study aimed to compare the antioxidant activity of leaves from the two varieties of O. tenuiflorum L. and formulate and evaluate the quality parameters of effervescent granules of the potent extract. The antioxidant activity of O. tenuiflorum L. ethanolic extracts was evaluated by DPPH radical scavenging assay at 1, 10, and 100 µg/mL concentrations, where ascorbic acid was used as the positive control. The antioxidant activity of purple-leafed O. tenuiflorum L. was found to be higher than that of green-leafed O. tenuiflorum L. Therefore, effervescent granules of the ethanolic extract of purple-leafed O. tenuiflorum L. were formulated using the pharmaceutical excipients tartaric acid, citric acid, and sodium bicarbonate and the quality parameters of the granules were evaluated. The formulated granules met the quality parameters assessed from the angle of repose, bulk density, tapped density, Carr’s Index, Hausner’s ratio, effervescent cessation time, and stability studies. Thus, the formulated effervescent granules of O. tenuiflorum L. can be used for therapeutic purposes or as a functional food.
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- 2023
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24. Risk factors for community-acquired bacterial infection among young infants in South Asia: a longitudinal cohort study with nested case–control analysis
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Samir K Saha, Abdullah H Baqui, Zulfiqar A Bhutta, Sajid Soofi, Rita Isaac, Martin W Weber, Shams El Arifeen, Mohammad Shahidul Islam, Gary L Darmstadt, Tanvir Hossain, Luke C Mullany, Dipak K Mitra, Shamim A Qazi, Davidson H Hamer, Anuradha Bose, Pinaki Panigrahi, Nong Shang, Patricia Hibberd, Stephanie J Schrag, Anita K M Zaidi, Imran Nisar, Qazi Sadeq-ur Rahman, Nicholas E Connor, Kalpana Panigrahi, Radhanath Satpathy, Jonas M Winchell, Melissa L Arvay, Maureen H Diaz, Jessica L Waller, A S M Nawshad Uddin Ahmed, Maksuda Islam, and Mohammad Belal Hossain
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Medicine (General) ,R5-920 ,Infectious and parasitic diseases ,RC109-216 - Abstract
Objective Risk factors predisposing infants to community-acquired bacterial infections during the first 2 months of life are poorly understood in South Asia. Identifying risk factors for infection could lead to improved preventive measures and antibiotic stewardship.Methods Five sites in Bangladesh, India and Pakistan enrolled mother–child pairs via population-based pregnancy surveillance by community health workers. Medical, sociodemographic and epidemiological risk factor data were collected. Young infants aged 0–59 days with signs of possible serious bacterial infection (pSBI) and age-matched controls provided blood and respiratory specimens that were analysed by blood culture and real-time PCR. These tests were used to build a Bayesian partial latent class model (PLCM) capable of attributing the probable cause of each infant’s infection in the ANISA study. The collected risk factors from all mother–child pairs were classified and analysed against the PLCM using bivariate and stepwise logistic multivariable regression modelling to determine risk factors of probable bacterial infection.Results Among 63 114 infants born, 14 655 were assessed and 6022 had signs of pSBI; of these, 81% (4859) provided blood samples for culture, 71% (4216) provided blood samples for quantitative PCR (qPCR) and 86% (5209) provided respiratory qPCR samples. Risk factors associated with bacterial-attributed infections included: low (relative risk (RR) 1.73, 95% credible interval (CrI) 1.42 to 2.11) and very low birth weight (RR 5.77, 95% CrI 3.73 to 8.94), male sex (RR 1.27, 95% CrI 1.07 to 1.52), breathing problems at birth (RR 2.50, 95% CrI 1.96 to 3.18), premature rupture of membranes (PROMs) (RR 1.27, 95% CrI 1.03 to 1.58) and being in the lowest three socioeconomic status quintiles (first RR 1.52, 95% CrI 1.07 to 2.16; second RR 1.41, 95% CrI 1.00 to 1.97; third RR 1.42, 95% CrI 1.01 to 1.99).Conclusion Distinct risk factors: birth weight, male sex, breathing problems at birth and PROM were significantly associated with the development of bacterial sepsis across South Asian community settings, supporting refined clinical discernment and targeted use of antimicrobials.
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- 2022
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25. High Social Support System among Elderly in a Hilly District: A Descriptive Cross-sectional Study
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Kalpana Paudel and Atit Tiwari
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elderly ,social support ,social support system. ,Medicine (General) ,R5-920 - Abstract
Introduction: Social support is an important contributing factor that promotes the health of the elderly by providing them with positive experiences, socially satisfying roles, or the ability to cope with stressful situations. The objective of this research study is to ind out the prevalence of a high social support system among the elderly in a Hilly district. Methods: A descriptive cross-sectional study was conducted among the elderly from a hilly district of Nepal. The ethical approval was taken from Ethical Review Board (Reference number: 3050). Data were collected from 20 May 2019 to August 2019. The elderly aged 60 years and above were the study population. A convenience sampling technique was used. The face-to-face interview was taken by using a structured questionnaire. Point estimate, and 95% Conidence Interval were calculated. Results: Out of 263 elderly people, 188 (71.48%) (66.02-76.94, 95% Conidence Interval) were provided with high support by their family members, friends, and signiicant others. Conclusions: The prevalence of high social support among the elderly was found to be higher when compared to similar studies conducted in similar settings.
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- 2022
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26. Veterans Affairs Health Care Provider Perceptions of Virtual Reality: Brief Exploratory Survey
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A'mie M Preston, Lana Brown, Kalpana P Padala, and Prasad R Padala
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Computer applications to medicine. Medical informatics ,R858-859.7 ,Medical technology ,R855-855.5 - Abstract
BackgroundVirtual reality (VR), a simulated experience that can be similar to or completely different from the real world, has become increasingly useful within the psychiatric and medical fields. This VR technology has been applied in medical school trainings, exposure therapy for individuals with posttraumatic stress disorder (PTSD), and reminiscence therapy associated with mood disorders for older adults. Perceptions of VR through the lens of the health care provider require further exploration. VR has grown in popularity; however, this modality continues to be underused in most Veterans Affairs (VA) hospitals. ObjectiveA web-based survey was used to explore health care provider perceptions of immersive VR availability and use for older adults and identify potential barriers for immersive VR use in older adults with cognitive impairment. MethodsAn 8-item web-based survey was developed to obtain health care provider feedback. This survey was disseminated throughout a single Veterans Integrated Services Network (VISN). The VR survey was developed via the Survey Monkey platform and distributed through the secure VA email network. Providers were asked to voluntarily participate in the brief, anonymous survey and offer their perceptions of immersive VR use within their patient population. Survey data were reviewed and interpreted using descriptive statistics. ResultsA total of 49 respondents completed the survey over a 15-day period. Of them, 36 respondents (73%) had heard of a VR device, though the majority (n=44, 90%) had never used or prescribed a VR device. Respondents identified several potential barriers to immersive VR use in older adults with cognitive impairment (eg, hearing difficulties, perceptions of technology, cognitive concerns, access to resources, and visual impairment). Despite the barriers identified, providers (n=48, 98%) still reported that they would feel comfortable prescribing immersive VR as an intervention for their patient population. ConclusionsSurvey findings revealed that health care providers within this VISN for VAs have heard of VR, although they may not have actively engaged in its use. Most of the providers reported that they would prescribe the use of an immersive VR intervention for their older adult patients. This key point highlights the desire to implement VR strategies for patient use by their providers. If underlying barriers can be addressed and relatively resolved, this technological intervention has the potential to create substantial breakthroughs in clinical care.
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- 2022
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27. An Assessment of Microplastic Contamination in a Commercially Important Marine Fish, Harpadon nehereus (Hamilton, 1822)
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Kalpana Prusty, Vasantkumar Rabari, Krupal Patel, Daoud Ali, Saud Alarifi, Virendra Kumar Yadav, Dipak Kumar Sahoo, Ashish Patel, and Jigneshkumar Trivedi
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ATR-FTIR ,Indo-Pacific region ,marine environment ,microplastic contamination ,seafood safety ,Biology (General) ,QH301-705.5 ,Genetics ,QH426-470 - Abstract
Microplastic (MP) pollution is a prevalent and global threat to fish. MP contamination was investigated in Harpadon nehereus collected from the principal fishing harbors of India’s northwest coast. A total of 213 specimens were collected from the major fishing harbors of Gujarat state (Jakhau, Okha, and Jaffrabad) and Maharashtra state (Mumbai). In the laboratory, the morphometric parameters of the specimens, such as total length and body weight, were measured. The collected specimens were analyzed for MP isolation using the previously documented protocol. MPs were quantified under a stereomicroscope, and physical parameters were recorded. All the examined specimens were found to be contaminated with MPs, with an abundance of 6.98 ± 6.73 MPs/g. The maximum contamination of MPs was recorded at the study site in Jaffrabad, followed by Jakhau, Mumbai, and Okha. Morphometric analysis of MPs revealed threads to be the most dominant shape. Black and blue MPs with a 1–2 mm size were the predominant recorded types. The chemical composition of extracted MPs revealed polyethylene (PE), polystyrene (PS), and polyurethane (PU) as polymer compositions. Conclusively, the findings highlighted a greater menace to seafood safety due to trophic transfer, which causes a hazardous effect on human health.
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- 2023
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28. Contributing Factors in the Tuberculosis Care Cascade in India: A Systematic Literature Review
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Yasobant S, Bhavsar P, Kalpana P, Memon F, Trivedi P, and Saxena D
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care-seeking ,care cascade ,factors ,tuberculosis ,india ,Public aspects of medicine ,RA1-1270 - Abstract
Sandul Yasobant,1,2 Priya Bhavsar,1 Pachillu Kalpana,1 Farjana Memon,1 Poonam Trivedi,1 Deepak Saxena1– 3 1Department of Epidemiology, Indian Institute of Public Health Gandhinagar (IIPHG), Gandhinagar, 382042, India; 2Center for One Health Education, Research, and Development (COHERD), Indian Institute of Public Health Gandhinagar (IIPHG), Gandhinagar, 382042, India; 3Jawaharlal Nehru Medical College, Datta Meghe Institute of Medical Sciences (DMIMS), Wardha, 442004, IndiaCorrespondence: Deepak SaxenaIndian Institute of Public Health Gandhinagar, Opp. Air Force Head Quarters, Nr. Lekawada, Gandhinagar, 382042, Gujarat, IndiaTel +91-9327396717Email ddeepak72@iiphg.orgAbstract: Tuberculosis (TB) care cascade is a recently evolved care model for patient retention across the sequential stages of care for a successful treatment outcome. The care cascade is multi-folded and complex in setting where the health system is reforming for its resilience. India, one of the countries with the highest burden of tuberculosis mortality and morbidity, is not an exception to this complexity. With the diverse challenges in the Indian health system and societal diversity, it is essential to understand the factors contributing to this TB care cascade. Thus, this study aims to map all the contributing factors to the TB care cascade in India. Further, it also captures the different patterns of factors explored so far in different countries’ regions. This systematic literature review was conducted between October 2020 and February 2021 in India using PubMed databases, Web of Science, and Google Scholar. Two reviewers extracted the data from eligible studies to summarize and tabulate important findings. Data were extracted and tabulated for study design, location of the study, type of TB patients, methodological approach, system side challenges, and demand-side challenges in the study’s findings. Out of 692 initial hits from the literature search, 28 studies were finally included to synthesize evidence in this review as per the inclusion and exclusion criteria. This review provides an insight into different factors such as the system-side (health workforce, institutional) and the demand-side (individual, societal) contributing towards the care cascade. The prime factors reflected in most of the studies were socio-economic condition, disease awareness, myths/beliefs, addictions among the demand-side factors and accessibility, the attitude of the healthcare staff, delay in referral for diagnosis among the system-side factors. The accountability for addressing these diverse factors is recommended to close the gaps in the TB care cascade.Keywords: care-seeking, care cascade, factors, tuberculosis, India
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- 2021
29. Disrespect and abuse during facility-based childbirth in Pokhara metropolitan city
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Rekha Thapaliya, Kalpana Paudel, and Saphalta Shrestha
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childbirth ,disrespect and abuse ,facility ,pokhara ,Medicine (General) ,R5-920 - Abstract
Introduction: Respectful maternity care is the universal right of every childbearing woman, which promotes the practices that recognize women’s preferences and women’s and newborns’ needs. The objective of the study was to assess disrespect and abuse during facility-based childbirth in Pokhara. Methods: Postnatal mothers having vaginal institutional delivery were included in the study. Non-probability purposive sampling technique was done to select 231 samples. Face to face interview technique with structured interview schedule was used. Descriptive and inferential statistics were used for data analysis. Results: Most (88.3%) of the mothers were between the age of 20 and 34 years with the mean age of 25.39±4.799 years. More than half of them had spontaneous vaginal delivery with episiotomy and (87%) of mothers had no any complications during childbirth. The overall disrespect and abuse during facility-based childbirth was (70.1%) and only (29.9%) of the postnatal mothers received respectful and non-abusive care. Regarding types of disrespect and abuse, (34.6%) of them were suffered from physical abuse, (68%) received non-consented care, (22.5%) of them received non-confidential and non-dignified care, (1.3%) experienced discrimination based on specific attributes and (26%) suffered from abandonment or neglect of care. There was no significant association between the prevalence of disrespect and abuse with socio-demographic and obstetric characteristics of the mothers. The association was found with place of delivery. Conclusion: It is concluded that near to three fourth of the postnatal mothers suffer from disrespect and abuse during facility based child birth in Pokhara. Thus, to increase respectful and non-abusive care during facility based childbirth, practice of respectful maternity care should be promoted including development of clinical guidelines and protocols.
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- 2021
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30. Soil Fertility Evaluation to Adopt Climate-Smart Agriculture in Mambattu Village, Maduranthakam Block of Kanchipuram District, Tamil Nadu, India
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Kalpana Palani, Selva Preetha Paneer Selvam, Sathya Velusamy and Ramasubramaniyan Ramanathan Melmangalam
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soil fertility, agriculture, lean farming, climate change, sustainable agriculture ,Environmental effects of industries and plants ,TD194-195 ,Science (General) ,Q1-390 - Abstract
Assessment of soil fertility is essential to help identify strategies for sustainable agricultural production systems that decrease the negative environmental impact. The objective of this research study is to carry out a preliminary assessment of soil fertility status to adopt climate-smart agriculture to address the climate change challenges that adversely affect crop productivity and livelihoods of the farming community. The research was carried out in Mambattu village, Maduranthakam block of Kanchipuram district, Tamil Nadu. A systematic set of twenty geo-referenced soil samples were collected from the study village using GPS (Global Positioning System) and analysed for pH, EC, available macro, secondary and micronutrients to develop a credible soil fertility index (SFI). The preliminary fertility data of Mambattu village revealed that the pH of soil samples varied from acidic to alkaline with about 40% as neutral while the electrical conductivity showed non-saline and medium status of Organic Carbon (OC). The soil samples were predominantly sufficient in N and some micro nutrients (Fe, Mn), while medium in S and B and deficient in P, K, Ca, Mg, Zn and Cu. Results from initial studies indicate that practices like site specific nutrient management, green manuring, use of organic inputs, use of integrated pest management, seed treatment etc., have a high potential for implementing climate-smart agricultural technologies. Soil fertility evaluation can be an efficient tool to improve soil health which can positively impact crop productivity and be one of the important climate-smart technologies practices adopted by the farmers.
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- 2021
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31. Effect of Organisational Climate and Type of Autonomous Colleges on Academic Achievement of the Students
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Kalpana Behera, Shisira Bania, Harihar Sarangi, and Ratnamanjari Dash
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This article examines the independent and interaction influence of organizational climate and the type of autonomous colleges on the academic performance of students. Organizational climate encompasses various elements such as leadership styles, communication patterns, and staff morale, collectively shaping the institutional environment. Autonomous colleges, with their capacity for innovation in curriculum design, pedagogical methods, and assessment practices, provide a unique context for this analysis. To explore the effect, researchers employed a quantitative approach, surveying 480 students across 12 colleges (both government and non-government) in Odisha, India. Questionnaires assessed student perceptions of organizational climate and academic achievement. Additionally, researchers collected student result sheets and surveyed college staff to gain a well-rounded perspective on the college climate. Data analysis using ANOVA and Scheffe tests identified significant effects. Major Findings of the study confirm that a positive organizational climate, regardless of college type, is associated with higher student academic achievement. Interestingly, students in government autonomous colleges achieved higher scores than those in non-government ones. The most significant finding, however, is the interaction effect. Students in government autonomous colleges with a strong learning environment achieved the highest scores, while those in non-government autonomous colleges with a weak environment achieved the lowest.
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- 2024
32. Mental Health in the Medical Home: A Longitudinal Curriculum for Pediatric Residents on Behavioral and Mental Health Care
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Nicole Meyers, Beth Maletz, Evelyn Berger-Jenkins, Mariellen Lane, Erin Shindle, Marguerite Costich, Steve Caddle, Connie Kostacos, Gabriella Paskin, Kalpana Pethe, Sydney Shope, Marina Catallozzi, and Suzanne Friedman
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Community-Based Medicine ,Pediatrics ,Primary Care ,Well-Being/Mental Health ,Integrated Behavioral Health ,Medicine (General) ,R5-920 ,Education - Abstract
Introduction Currently, a pediatric mental and behavioral health crisis exists, driven by increasing stressors among children coupled with a paucity of psychiatric providers who treat children. Pediatric primary care providers can play a critical role in filling this gap, yet trainees feel uncomfortable screening for, identifying, and managing mental and behavioral health conditions among their patients. Thus, expanding training for pediatricians in this domain is critical. Methods We created a longitudinal integrated mental and behavioral health curriculum for pediatric residents at NewYork-Presbyterian/Columbia University Irving Medical Center with a logic model contextualizing outpatient pediatric care as a framework for the development and planned evaluation. We devised a comprehensive set of materials, with presentations on topics including attention deficit hyperactivity disorder and anxiety disorders. Workflows and escalation pathways promoting collaboration among interdisciplinary providers were implemented. We evaluated residents’ and faculty members’ participation in the curriculum and their perception of curricular gaps. Results Approximately 155 pediatric residents participated in the curriculum from 2017 to 2021, reflecting robust curricular exposure. Few residents and no preceptors perceived mental and behavioral health as a curricular gap. Discussion Our curriculum is feasible and can be adapted to a variety of educational settings. Its use of a logic model for development, implementation, and ongoing evaluation grounds the curriculum in educational theory and can address curricular gaps. The framework can be adapted to suit the needs of other institutions’ educational and practice settings and equip pediatric trainees with the skills to promote patient mental health and well-being.
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- 2022
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33. Unusual mode of dimerization of retinitis pigmentosa-associated F220C rhodopsin
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George Khelashvili, Anoop Narayana Pillai, Joon Lee, Kalpana Pandey, Alexander M. Payne, Zarek Siegel, Michel A. Cuendet, Tylor R. Lewis, Vadim Y. Arshavsky, Johannes Broichhagen, Joshua Levitz, and Anant K. Menon
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Medicine ,Science - Abstract
Abstract Mutations in the G protein-coupled receptor (GPCR) rhodopsin are a common cause of autosomal dominant retinitis pigmentosa, a blinding disease. Rhodopsin self-associates in the membrane, and the purified monomeric apo-protein opsin dimerizes in vitro as it transitions from detergent micelles to reconstitute into a lipid bilayer. We previously reported that the retinitis pigmentosa-linked F220C opsin mutant fails to dimerize in vitro, reconstituting as a monomer. Using fluorescence-based assays and molecular dynamics simulations we now report that whereas wild-type and F220C opsin display distinct dimerization propensities in vitro as previously shown, they both dimerize in the plasma membrane of HEK293 cells. Unexpectedly, molecular dynamics simulations show that F220C opsin forms an energetically favored dimer in the membrane when compared with the wild-type protein. The conformation of the F220C dimer is unique, with transmembrane helices 5 and 6 splayed apart, promoting widening of the intracellular vestibule of each protomer and influx of water into the protein interior. FRET experiments with SNAP-tagged wild-type and F220C opsin expressed in HEK293 cells are consistent with this conformational difference. We speculate that the unusual mode of dimerization of F220C opsin in the membrane may have physiological consequences.
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- 2021
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34. Correlation between Spiritual Well-Being and Level of Fatigue among Patients Suffering from Breast Cancer
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Maria Komariah, Mohd Khairul Zul Hasymi Firdaus, Kalpana Paudel Aryal, and Md Abdul Latif
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breast cancer ,chemotherapy ,fatigue ,spiritual well-being ,treatment ,Nursing ,RT1-120 - Abstract
Cancer-related fatigue has been shown to be a significant side effect that influences a person’s wellbeing, during treatment, and after treatment. It is recorded that cancer patients have also been shown experiencing spiritual distress. The study aims to determine the connection between spiritual well-being and cancer-related fatigue among patients suffering from breast cancer during chemotherapy treatment. 112 patients who were undergoing chemotherapy treatment were recruited in this study using a correlational design. The instruments used in assessing spiritual well-being and fatigue are Functional Assessment of Chronic Illness Therapy - Spirituality (FACIT-Sp) and FACIT-Fatigue Scales. Data were analyzed using the Spearman Correlation analysis. Mean spiritual well-being score was 35.91 (SD = 6.89), and the mean fatigue score was 33.04 (SD = 9.58). There were a moderate and significant correlation between fatigue scores and spiritual well-being (r = .364, p < 0.001). Breast cancer patients who had higher spiritual well-being that means they would alleviate fatigue symptoms. Therefore, nurses should consider that increasing spiritual well-being would reduce fatigue and vice versa.
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- 2021
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35. Prediction of Rice Cultivation in India—Support Vector Regression Approach with Various Kernels for Non-Linear Patterns
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Kiran Kumar Paidipati, Christophe Chesneau, B. M. Nayana, Kolla Rohith Kumar, Kalpana Polisetty, and Chinnarao Kurangi
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rice cultivation ,food security ,prediction ,support vector regression with kernels ,RMSE and MAE ,Agriculture (General) ,S1-972 ,Engineering (General). Civil engineering (General) ,TA1-2040 - Abstract
The prediction of rice yields plays a major role in reducing food security problems in India and also suggests that government agencies manage the over or under situations of production. Advanced machine learning techniques are playing a vital role in the accurate prediction of rice yields in dealing with nonlinear complex situations instead of traditional statistical methods. In the present study, the researchers made an attempt to predict the rice yield through support vector regression (SVR) models with various kernels (linear, polynomial, and radial basis function) for India overall and the top five rice producing states by considering influence parameters, such as the area under cultivation and production, as independent variables for the years 1962–2018. The best-fitted models were chosen based on the cross-validation and hyperparameter optimization of various kernel parameters. The root-mean-square error (RMSE) and mean absolute error (MAE) were calculated for the training and testing datasets. The results revealed that SVR with various kernels fitted to India overall, as well as the major rice producing states, would explore the nonlinear patterns to understand the precise situations of yield prediction. This study will be helpful for farmers as well as the central and state governments for estimating rice yield in advance with optimal resources.
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- 2021
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36. Adoptive T cell immunotherapy for medullary thyroid carcinoma targeting GDNF family receptor alpha 4
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Vijay G. Bhoj, Lucy Li, Kalpana Parvathaneni, Zheng Zhang, Stephen Kacir, Dimitrios Arhontoulis, Kenneth Zhou, Bevin McGettigan-Croce, Selene Nunez-Cruz, Gayathri Gulendran, Alina C. Boesteanu, Laura Johnson, Michael D. Feldman, Enrico Radaelli, Keith Mansfield, MacLean Nasrallah, Rebecca S. Goydel, Haiyong Peng, Christoph Rader, Michael C. Milone, and Don L. Siegel
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Medullary thyroid carcinoma ,immunotherapy ,GFRa4 ,CAR T cells ,RETMC ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Metastatic medullary thyroid cancer (MTC) is a rare but often aggressive thyroid malignancy with a 5-year survival rate of less than 40% and few effective therapeutic options. Adoptive T cell immunotherapy using chimeric antigen receptor (CAR)-modified T cells (CAR Ts) is showing encouraging results in the treatment of cancer, but development is challenged by the availability of suitable target antigens. We identified glial-derived neurotrophic factor (GDNF) family receptor alpha 4 (GFRα4) as a putative antigen target for CAR-based therapy of MTC. We show that GFRα4 is highly expressed in MTC, in parafollicular cells within the thyroid from which MTC originates, and in normal thymus. We isolated two single-chain variable fragments (scFvs) targeting GFRα4 isoforms a and b by antibody phage display. CARs bearing the CD3ζ and the CD137 costimulatory domains were constructed using these GFRα4-specific scFvs. GFRα4-specific CAR Ts trigger antigen-dependent cytotoxicity and cytokine production in vitro, and they are able to eliminate tumors derived from the MTC TT cell line in an immunodeficient mouse xenograft model of MTC. These data demonstrate the feasibility of targeting GFRα4 by CAR T and support this antigen as a promising target for adoptive T cell immunotherapy and other antibody-based therapies for MTC.
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- 2021
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37. An assessment of the efficacy of a rotary and a reciprocating retreatment file system for removal of gutta-percha from root canals: An in vitro cone-beam computed tomography study
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Kapil Dasaram Wahane, Shraddha Shekhar Kulkarni, Sadashiv Daokar, Kalpana Patil, Karishma Patel, and Trupti Thorat
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cone-beam computed tomography ,epoxy resin based sealer ,neoendo ,retreatment ,waveone ,Dentistry ,RK1-715 - Abstract
Aim: The aim of this study was to compare the NeoEndo and WaveOne retreatment systems concerning the effective removal of epoxy resin-based sealer and gutta-percha during the retreatment of straight root canals. Materials and Method: Sixty extracted, human mandibular first premolars with single straight roots were selected based on cone-beam computed tomography (CBCT) evaluations. The root canals were instrumented with the ProTaper system up to the F3 file and filled with gutta-percha and epoxy resin-based sealer using the cold lateral condensation technique. After 1 month, the samples were randomly divided into two groups (n = 30) according to the retreatment system used: NeoEndo and WaveOne. A CBCT device scanned specimen after the root filling and retreatment procedures, and the decrease in the volume of filling material after each retreatment protocol was measured. The results were analyzed using the paired t-test and additional box-and-whisker plots. Results: The WaveOne removed significantly more material than the NeoEndo (P = 0.005) system. Conclusion: The WaveOne system was more effective than the NeoEndo retreatment system during the removal of filling material.
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- 2021
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38. Recycled integrated circuit detection using reliability analysis and machine learning algorithms
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Udaya Shankar Santhana Krishnan and Kalpana Palanisamy
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ageing ,backpropagation ,circuit analysis computing ,differential amplifiers ,hot carriers ,integrated circuit modelling ,Computer engineering. Computer hardware ,TK7885-7895 ,Electronic computers. Computer science ,QA75.5-76.95 - Abstract
Abstract The use of counterfeit integrated circuits (ICs) in electronic products decreases its quality and lifetime. Recycled ICs can be detected by the method of aging analysis. Aging is carried out through reliability analysis with the effect of hot carrier injection and bias temperature instability (BTI). In this work, three machine learning methods, namely K‐means clustering, back propagation neural network (BPNN) and support vector machines (SVMs), are used to detect the recycled IC aged for a shorter period (1 day) with minimum data size. This work also distinguishes the effects of degradation due to process variations and reliability effects. The reliability and Monte Carlo simulation are performed on benchmark circuits such as c17, s27, b02 and fully differential folded‐cascode amplifier using the Cadence Virtuoso tool, and the parameters such as minimum voltage, delay value, supply current, gain, phase margin and bandwidth are measured. Machine learning methods are developed using MATLAB to train and classify the parameters. From the results obtained, it is observed that the classification rate for the benchmark circuits is 100%, and using BPNN, K‐means clustering and SVM and the proposed method, recycled IC or used IC is detected even if it was used for 1 day.
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- 2021
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39. Property enhancement of mustard stalk biomass by Torrefaction: Characterization and optimization of process parameters using response surface methodology
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Manish Vashishtha and Kalpana Patidar
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Torrefaction ,Mustard stalk ,High heating value ,Energy yield ,Response surface methodology ,Materials of engineering and construction. Mechanics of materials ,TA401-492 ,Energy conservation ,TJ163.26-163.5 - Abstract
Present work is devoted to the study of independent operating parameters namely torrefaction temperature (TT), residence (torrefaction) time (RT), and heating rate (HR) on the slow pyrolysis or torrefaction of an important agro residue namely mustard stalk (MS). Response surface methodology along with three-factor and three-level Box-Behnken design is applied to find the effect of above mentioned three parameters on the higher heating value, energy yield, and fixed carbon of the torrefied MS. Experimentation and modeling analysis reveal that the effect of these three factors' responses follows the sequence: (TT) > (RT) > (HR). Also, the experimental data were analyzed using analysis of variance and fitted to a second-order polynomial model applying multiple regression analysis. Predictive models were obtained which were able to satisfactorily fit the experimental data, with the coefficient of determination (R2) values higher than 0.95. Derringer’s desirability function methodology was used for the optimization study which showed that the HHV, EY, and FC at optimum condition TT 300 °C, RT 20 min, HR 5 °C/min were obtained as 21.26 MJ/kg, 81.26 %, and 35.38 wt%, respectively for MS. Torrefied MS, as compared to raw MS, showed better solid fuel properties for co-combustion with coal and gasification. The experimental values closely agree with the corresponding predicted values. The functional behavior of raw and torrefied MS was studied by Fourier Transform Infra-Red Spectrometry.
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- 2021
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40. Towards a unified open access dataset of molecular interactions
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Pablo Porras, Elisabet Barrera, Alan Bridge, Noemi del-Toro, Gianni Cesareni, Margaret Duesbury, Henning Hermjakob, Marta Iannuccelli, Igor Jurisica, Max Kotlyar, Luana Licata, Ruth C. Lovering, David J. Lynn, Birgit Meldal, Bindu Nanduri, Kalpana Paneerselvam, Simona Panni, Chiara Pastrello, Matteo Pellegrini, Livia Perfetto, Negin Rahimzadeh, Prashansa Ratan, Sylvie Ricard-Blum, Lukasz Salwinski, Gautam Shirodkar, Anjalia Shrivastava, and Sandra Orchard
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Science - Abstract
The IMEx consortium provides one of the largest resources of curated, experimentally verified molecular interaction data. Here, the authors review how IMEx evolved into a fundamental resource for life scientists and describe how IMEx data can support biomedical research.
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- 2020
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41. Elevation of fatty acid desaturase 2 in esophageal adenocarcinoma increases polyunsaturated lipids and may exacerbate bile acid‐induced DNA damage
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Jeffrey Molendijk, Cathryn M. Kolka, Henry Cairns, Sandra Brosda, Ahmed Mohamed, Alok K. Shah, Ian Brown, Mark P. Hodson, Thomas Hennessy, Guanghao Liu, Thomas Stoll, Renee S. Richards, Michael Gartside, Kalpana Patel, Nicholas J. Clemons, Wayne A. Phillips, Andrew Barbour, Johan A. Westerhuis, and Michelle M. Hill
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Barrett's esophagus ,esophageal adenocarcinoma ,FADS2 ,lipid desaturation ,lipid metabolism ,Medicine (General) ,R5-920 - Abstract
Abstract Background The risk of esophageal adenocarcinoma (EAC) is associated with gastro‐esophageal reflux disease (GERD) and obesity. Lipid metabolism‐targeted therapies decrease the risk of progressing from Barrett's esophagus (BE) to EAC, but the precise lipid metabolic changes and their roles in genotoxicity during EAC development are yet to be established. Methods Esophageal biopsies from the normal epithelium (NE), BE, and EAC, were analyzed using concurrent lipidomics and proteomics (n = 30) followed by orthogonal validation on independent samples using RNAseq transcriptomics (n = 22) and immunohistochemistry (IHC, n = 80). The EAC cell line FLO‐1 was treated with FADS2 selective inhibitor SC26196, and/or bile acid cocktail, followed by immunofluorescence staining for γH2AX. Results Metabolism‐focused Reactome analysis of the proteomics data revealed enrichment of fatty acid metabolism, ketone body metabolism, and biosynthesis of specialized pro‐resolving mediators in EAC pathogenesis. Lipidomics revealed progressive alterations (NE‐BE‐EAC) in glycerophospholipid synthesis with decreasing triglycerides and increasing phosphatidylcholine and phosphatidylethanolamine, and sphingolipid synthesis with decreasing dihydroceramide and increasing ceramides. Furthermore, a progressive increase in lipids with C20 fatty acids and polyunsaturated lipids with ≥4 double bonds were also observed. Integration with transcriptome data identified candidate enzymes for IHC validation: Δ4‐Desaturase, Sphingolipid 1 (DEGS1) which desaturates dihydroceramide to ceramide, and Δ5 and Δ6‐Desaturases (fatty acid desaturases, FADS1 and FADS2), responsible for polyunsaturation. All three enzymes showed significant increases from BE through dysplasia to EAC, but transcript levels of DEGS1 were decreased suggesting post‐translational regulation. Finally, the FADS2 selective inhibitor SC26196 significantly reduced polyunsaturated lipids with three and four double bonds and reduced bile acid‐induced DNA double‐strand breaks in FLO‐1 cells in vitro. Conclusions Integrated multiomics revealed sphingolipid and phospholipid metabolism rewiring during EAC development. FADS2 inhibition and reduction of the high polyunsaturated lipids effectively protected EAC cells from bile acid‐induced DNA damage in vitro, potentially through reduced lipid peroxidation.
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- 2022
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42. Peer-led family-centred problem management plus for immigrants (PMP-I) for mental health promotion among immigrants in USA: protocol for a pilot, randomised controlled feasibility trial
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Steven D Hollon, Kalpana Poudel-Tandukar, Krishna C Poudel, Cynthia S Jacelon, Christopher R Martell, Shan Rai, Razu Ramdam, Holly Laws, Jerrold S Meyer, and Elizabeth R Bertone-Johnson
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Medicine - Abstract
Introduction Research is needed to investigate preventive strategies to reduce mental health burden and assess effective implementation among immigrants. Problem management plus (PMP) is a low-intensity multicomponent psychological intervention developed by the World Health Organization (WHO) that trained laypeople can deliver. PMP has been adapted as a prevention intervention and developed as PMP for immigrants (PMP-I), including psychoeducation, problem-solving, behavioural activations and mind–body exercise, to address immigrants’ multiple stressors. This pilot trial aims to assess the feasibility and acceptability of PMP-I and provide a preliminary estimate of the difference between PMP-I versus community support services pamphlets on the primary outcomes of interest (stress, anxiety and depressive symptoms) to inform the design of a large-scale intervention.Methods and analysis The feasibility and acceptability of PMP-I will be assessed by measuring recruitment, session attendance, retention rates, programme acceptability and the fidelity of intervention delivery. This pilot trial will test preliminary effects of PMP-I vs community support services pamphlets in a randomised controlled trial (N=232 participants from 116 families (2 members/family); 58 families randomised to condition intervention or control) on stress, anxiety and depressive symptoms (primary outcomes), chronic physiological stress assessed in hair cortisol (secondary outcomes), and coping, family conflict resolution, and social networking (targets), with assessment at baseline, postintervention and 3-month postintervention. Eligibility criteria for the primary study participants include Bhutanese ≥18 years resettled in Massachusetts with a score of ≤14 on the Patient Health Questionnaire-9. All family members will be invited to participate in the family-based intervention (one session/week for 5 weeks). Multilevel modelling will compare the longitudinal change in outcomes for each treatment arm.Ethics and dissemination The Institutional Review Board of the University of Massachusetts Amherst approved this study (Protocol: 1837). Written informed consent will be obtained from all participants. The study results will be used to inform the design of a large-scale intervention and will be disseminated in peer-reviewed journals and conferences.Trial registration number NCT04453709.
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- 2022
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43. Candida auris on Apples: Diversity and Clinical Significance
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Anamika Yadav, Kusum Jain, Yue Wang, Kalpana Pawar, Hardeep Kaur, Krishan Kumar Sharma, Vandana Tripathy, Ashutosh Singh, Jianping Xu, and Anuradha Chowdhary
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C. auris ecology ,natural environment ,fungicides ,dimethyl inhibitors ,cross-resistance ,agriculture azoles ,Microbiology ,QR1-502 - Abstract
ABSTRACT Candida auris is a multidrug-resistant nosocomial fungal pathogen. While the marine environment was recently identified as a natural niche for C. auris, the environment(s) that might have contributed to the development and spread of antifungal resistance in C. auris remains a mystery. Because stored fruits are often treated with fungicides to prevent postharvest spoilage, we hypothesized that stored fruits could serve as a possible selective force for and a transmission reservoir of antifungal-resistant isolates of pathogenic yeasts, including C. auris. To test this hypothesis, we screened fruits to study the diversity of pathogenic yeasts and their antifungal susceptibility profiles. Among the 62 screened apples, the surfaces of 8 were positive for C. auris, and all were stored apples. Whole-genome sequencing (WGS) showed that C. auris strains from apples were genetically diverse and exhibited broad phylogenetic distribution among the subclades within clade I. Interestingly, strains from apples had closely related strains from other sources in India, including from patients, hospitals, and marine environments, and from clinical strains from other parts of the world. A broad range of fungicides, including dimethyl inhibitors (DMIs), were detected in stored apples, and all C. auris isolates exhibited reduced sensitivity to DMIs. Interestingly, C. auris was not isolated from freshly picked apples. Together, the results suggest a potentially complex ecology for C. auris with agriculture fungicide application on stored fruits as a significant selective force for drug resistance in clinics. IMPORTANCE In 2019, the U.S. Centers for Disease Control and Prevention classified the multidrug-resistant Candida auris as one of five pathogens posing the most urgent threats to public health. At present, the environment(s) that might have contributed to the development and spread of antifungal resistance in C. auris is unknown. Here, we tested whether fruits could be a source of multidrug-resistant C. auris. We identified genetically diverse C. auris strains with reduced sensitivity to major triazole dimethyl inhibitors fungicides on the surfaces of stored apples. The successful isolation of C. auris from apples here calls for additional investigations into plants as a reservoir of C. auris. Our findings suggest that C. auris in the natural ecosystem may come in contact with agriculture fungicides and that stored fruits could be a significant niche for the selection of azole resistance in C. auris and other human fungal pathogens.
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- 2022
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44. Constraining Parameters for the Accelerating Universe in $f(R,\mathcal{L}_{m})$ Gravity
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Devi, Y. Kalpana, Narawade, S. A., and Mishra, B.
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General Relativity and Quantum Cosmology ,High Energy Physics - Theory - Abstract
In the paper, we present an accelerating cosmological model in $f(R,\mathcal{L}_{m})$ gravity with the parameter constrained through the cosmological data sets. At the beginning, we have employed a functional form of $f(R,\mathcal{L}_{m}) =\frac{R}{2}+\alpha R^2+\mathcal{L}_{m}^\beta$, where $\alpha$ and $\beta$ are model parameters. This model is well motivated from the Starobinsky model in $f(R)$ gravity and the power law form of $f(\mathcal{L}_{m})$. The Hubble parameter has been derived with some algebraic manipulation and constrained by Hubble data and Pantheon$^{+}$ data. With the constraint parameters, present value of deceleration parameter has been obtained to as $q_{0}\approx-0.63$ with the transition at $z_{t}\approx0.7$. It shows the early deceleration and late time acceleration behaviour. The present value of other geometric parameters such as the jerk and snap parameter are obtained to be $j_{0}\approx0.78$ and $s_{0}\approx 0.1$ respectively. The state finder diagnostic test gives the quintessence behaviour at present and converging to $\Lambda$CDM at late times. Moreover the $Om(z)$ diagnostics gives negative slope which shows that the model favours the state finder diagnostic result. Also the current age of Universe has been obtained as, $t_{0} = 13.64~~Gyrs$. The equation of state parameter also shows the quintessence behaviour. Based on the present analysis, it indicates that the $f(R,\mathcal{L}_{m})$ gravitational theory may be another alternative to study the dark energy models., Comment: 12 pages, 10 figures
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- 2024
45. Maze Discovery using Multiple Robots via Federated Learning
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Ranasinghe, Kalpana, Madushanka, H. P., Scaciota, Rafaela, Samarakoon, Sumudu, and Bennis, Mehdi
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Computer Science - Machine Learning ,Computer Science - Artificial Intelligence ,Computer Science - Robotics ,Electrical Engineering and Systems Science - Image and Video Processing - Abstract
This work presents a use case of federated learning (FL) applied to discovering a maze with LiDAR sensors-equipped robots. Goal here is to train classification models to accurately identify the shapes of grid areas within two different square mazes made up with irregular shaped walls. Due to the use of different shapes for the walls, a classification model trained in one maze that captures its structure does not generalize for the other. This issue is resolved by adopting FL framework between the robots that explore only one maze so that the collective knowledge allows them to operate accurately in the unseen maze. This illustrates the effectiveness of FL in real-world applications in terms of enhancing classification accuracy and robustness in maze discovery tasks., Comment: Accepted in ISCC 2024 conference
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- 2024
46. Optimality quality control thresholds for effective management of multiple sclerosis
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Kalpana Polisetty and Tirupathi Rao Padi
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multiple sclerosis ,sampling distributions ,quality control thresholds ,healthcare management ,simulation techniques ,Technology ,Technology (General) ,T1-995 ,Science ,Science (General) ,Q1-390 - Abstract
Multiple Sclerosis (MS) is a chronic disease of the nervous system that affects various parts of the body through its neuro signal impulses. This study focused on the development of quality control thresholds for the optimal health management of the MS disease. With the help of mean and variance from stochastic models of MS, the thresholds for quality assurance at the upper and lower limits of MS causing cells and oligodendrocytes are developed. Sampling distributions of simulated data were used to get the control limits. These control limits will act as guiding alerts used in designing quality specifications and healthcare decision support systems. The analysis is carried out with threshold limits at a required level of significance by considering natural tolerances.
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- 2020
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47. Serum Electrolyte in Acute Exacerbation of Chronic Obstructive Pulmonary Disease
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Chandra Prasad Acharya and Kalpana Paudel
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chronic obstructive pulmonary disease ,potassium ,sodium ,Medicine (General) ,R5-920 - Abstract
Introduction: Chronic Obstructive Pulmonary Disease (COPD) is one of the leading causes of mortality and morbidity worldwide. Though COPD is mainly a chronic disease, many patients experience exacerbations that are related to worst survival outcome, especially with abnormal serum electrolyte level. The objective of this study was to evaluate serum electrolyte levels among the patients with acute exacerbation of COPD. Methods: Structured questionnaire and patients’ charts were used to collect data. Data was analyzed using Statistical Package for the Social Sciences (SPSS) software version 16.0 and descriptive statistics were used to generate the research findings. Results: The mean age of the patients with Acute exacerbation of COPD was 69.57± 9.765 years. Among 100 patients, (83%) belonged to the age group of 60 years and above, (54%) were male, (74%) were married, (52%) were illiterate and (41%) were engaged in agriculture, (41%) consumed alcohol and (67%) were smokers. Dyspnoea (90%) was the most common symptom. The mean level of sodium and potassium were 133.8±4.830 mEq/L, 3.6±0.533 mmol/L, respectively. Fifty seven percent patients had electrolyte disorder. More than half (51%) had hyponatremia and (40%) had hypokalemia. The average value of pH, PaCO2 and PaO2 are 7.34 ± 0.727, 46.64 ± 9.787 mm Hg and 69.38 ± 9.255 mm Hg respectively. Among them, (18%) were in respiratory failure. Conclusion: This study concluded that hyponatremia and hypokalemia are prevalent electrolyte disorder with AE of COPD patients. Therefore, we recommend routine monitoring of the serum electrolytes for better outcomes of patients.
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- 2020
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48. Acute to Subacute Atraumatic Entrapment Neuropathies in Patients With CMT1A: A Report of a Distinct Phenotypic Variant of CMT1A
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Zhiyong Chen, Monica Saini, Shermyn X. M. Neo, Peng-Soon Ng, Jasmine S. Koh, Kalpana Prasad, Kamal Verma, Sonia Davila, Weng Khong Lim, Ziqun Phua, Michelle M. Li, Corrine Kang, Karine S. S. Tay, and Josiah Y. H. Chai
- Subjects
Charcot-Marie-Tooth type 1A (CMT1A) ,CMT1A duplication ,PMP22 protein ,peripheral nerve ultrasound ,Charcot-Marie-Tooth disease ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Charcot-Marie-Tooth type 1A (CMT1A) is typically characterised as a childhood-onset, symmetrical, length-dependent polyneuropathy with a gradual progressive clinical course. Acute to subacute neurological deterioration in CMT1A is rare, and has been reported secondary to overlap pathologies including inflammatory neuropathy. We identified two patients with CMT1A who presented with acute to subacute, atraumatic, entrapment neuropathies as an initial symptom. A superimposed inflammatory neuropathy was excluded. Both patients had a diffuse demyelinating polyneuropathy, with markedly low motor nerve conduction velocities (
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- 2022
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49. Stress of Overseas Long-Distance Care During COVID-19: Potential 'CALM'ing Strategies
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Aparna Das, Kalpana P. Padala, Prabhava Bagla, and Prasad R. Padala
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COVID-19 ,family members ,immigrants ,physical distance ,health ,Psychiatry ,RC435-571 - Abstract
Graphical Abstract“CALM”ing strategies during COVID-19 pandemic. Created with BioRender.com.
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- 2021
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50. Complex structural rearrangements are present in high-grade dysplastic Barrett’s oesophagus samples
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Felicity Newell, Kalpana Patel, Michael Gartside, Lutz Krause, Sandra Brosda, Lauren G. Aoude, Kelly A. Loffler, Vanessa F. Bonazzi, Ann-Marie Patch, Stephen H. Kazakoff, Oliver Holmes, Qinying Xu, Scott Wood, Conrad Leonard, Guy Lampe, Reginald V. Lord, David C. Whiteman, John V. Pearson, Katia Nones, Nicola Waddell, and Andrew P. Barbour
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Oesophageal adenocarcinoma ,Barrett’s oesophagus ,Chromothripsis ,Breakage-fusion bridge ,Whole-genome sequencing ,Internal medicine ,RC31-1245 ,Genetics ,QH426-470 - Abstract
Abstract Background Oesophageal adenocarcinoma (EAC) incidence is increasing and has a poor survival rate. Barrett’s oesophagus (BE) is a precursor condition that is associated with EAC and often occurs in conjunction with chronic gastro-oesophageal reflux, however many individuals diagnosed with BE never progress to cancer. An understanding of the genomic features of BE and EAC may help with the early identification of at-risk individuals. Methods In this study, we assessed the genomic features of 16 BE samples using whole-genome sequencing. These included non-dysplastic samples collected at two time-points from two BE patients who had not progressed to EAC over several years. Seven other non-dysplastic samples and five dysplastic BE samples with high-grade dysplasia were also examined. We compared the genome profiles of these 16 BE samples with 22 EAC samples. Results We observed that samples from the two non-progressor individuals had low numbers of somatic single nucleotide variants, indels and structural variation events compared to dysplastic and the remaining non-dysplastic BE. EAC had the highest level of somatic genomic variations. Mutational signature 17, which is common in EAC, was also present in non-dysplastic and dysplastic BE, but was not present in the non-progressors. Many dysplastic samples had mutations in genes previously reported in EAC, whereas only mutations in CDKN2A or in the fragile site genes appeared common in non-dysplastic samples. Rearrangement signatures were used to identify a signature associated with localised complex events such as chromothripsis and breakage fusion-bridge that are characteristic of EACs. Two dysplastic BE samples had a high contribution of this signature and contained evidence of localised rearrangements. Two other dysplastic samples also had regions of localised structural rearrangements. There was no evidence for complex events in non-dysplastic samples. Conclusions The presence of complex localised rearrangements in dysplastic samples indicates a need for further investigations into the role such events play in the progression from BE to EAC.
- Published
- 2019
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