1. Hydration forces between aligned DNA helices undergoing B to A conformational change: In-situ X-ray fiber diffraction studies in a humidity and temperature controlled environment
- Author
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Kai E. Ewert, Hauke Schollmeyer, Eric B. Sirota, Phillip A. Kohl, Ryan Case, Youli Li, Roger Pynn, and Cyrus R. Safinya
- Subjects
0301 basic medicine ,Diffraction ,Analytical chemistry ,02 engineering and technology ,DNA, A-Form ,03 medical and health sciences ,X-Ray Diffraction ,Structural Biology ,Phase (matter) ,Molecule ,Relative humidity ,Exponential decay ,Chemistry ,Temperature ,Humidity ,DNA ,Equipment Design ,021001 nanoscience & nanotechnology ,Environment, Controlled ,030104 developmental biology ,Solvation shell ,Calibration ,0210 nano-technology ,Fiber diffraction ,DNA, B-Form - Abstract
Hydration forces between DNA molecules in the A- and B-Form were studied using a newly developed technique enabling simultaneous in situ control of temperature and relative humidity. X-ray diffraction data were collected from oriented calf-thymus DNA fibers in the relative humidity range of 98%–70%, during which DNA undergoes the B- to A-form transition. Coexistence of both forms was observed over a finite humidity range at the transition. The change in DNA separation in response to variation in humidity, i.e. change of chemical potential, led to the derivation of a force-distance curve with a characteristic exponential decay constant of ∼ 2 A for both A- and B-DNA. While previous osmotic stress measurements had yielded similar force-decay constants, they were limited to B-DNA with a surface separation (wall-to-wall distance) typically > 5 A. The current investigation confirms that the hydration force remains dominant even in the dry A-DNA state and at surface separation down to ∼ 1.5 A, within the first hydration shell. It is shown that the observed chemical potential difference between the A and B states could be attributed to the water layer inside the major and minor grooves of the A-DNA double helices, which can partially interpenetrate each other in the tightly packed A phase. The humidity-controlled X-ray diffraction method described here can be employed to perform direct force measurements on a broad range of biological structures such as membranes and filamentous protein networks.
- Published
- 2017