46 results on '"Kahya N"'
Search Results
2. Mobility of Min-proteins in Escherichia coli measured by fluorescence correlation spectroscopy
- Author
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Meacci, G., Ries, J., Fischer-Friedrich, E., Kahya, N., Schwille, P., and Kruse, K.
- Subjects
Quantitative Biology - Subcellular Processes ,Physics - Biological Physics ,Quantitative Biology - Biomolecules - Abstract
In the bacterium Escherichia coli, selection of the division site involves pole-to-pole oscillations of the proteins MinD and MinE. Different oscillation mechanisms based on cooperative effects between Min-proteins and on the exchange of Min-proteins between the cytoplasm and the cytoplasmic membrane have been proposed. The parameters characterizing the dynamics of the Min-proteins in vivo are not known. It has therefore been difficult to compare the models quantitatively with experiments. Here, we present in vivo measurements of the mobility of MinD and MinE using fluorescence correlation spectroscopy. Two distinct time-scales are clearly visible in the correlation curves. While the faster time-scale can be attributed to cytoplasmic diffusion, the slower time-scale could result from diffusion of membrane-bound proteins or from protein exchange between the cytoplasm and the membrane. We determine the diffusion constant of cytoplasmic MinD to be approximately 16\mu^{2}/s, while for MinE we find about 10\mu^{2}/s, independently of the processes responsible for the slower time-scale. Implications of the measured values for the oscillation mechanism are discussed., Comment: 18 pages, 5 figures
- Published
- 2007
- Full Text
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3. Neuro-Behçet’s Disease Presenting with Acute Psychosis: A Case Report
- Author
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Dolapoglu, N, primary and Kahya, N, additional
- Published
- 2023
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4. IRON-CATALYZED ARYL SELECTIVE ACYLATION OF MIXED DIORGANOZINCS
- Author
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PEKEL, Özgen Ömür and KAHYA, N. Didem
- Subjects
Engineering, Chemical ,lipids (amino acids, peptides, and proteins) ,Mühendislik, Kimya ,Mixed diorganozincs,acylation,iron catalyst - Abstract
Iron-catalyzed acylation of mixed alkylarylzincs with aromatic acyl halides in THF provides a new route for aryl-aroyl coupling. This procedure is an atom-economic supplement to transition metal-catalyzed acylation of diorganozincs.
- Published
- 2019
5. Toward Gradient Formation in Microfluidic Devices by using Slanted Ridges
- Author
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Schijndel, van, T., Singh, M.K., Gillies, M.F., Kahya, N., Kharin, A., Toonder, den, J.M.J., Processing and Performance, Microsystems, Group Den Toonder, and Institute for Complex Molecular Systems
- Abstract
Some lab-on-a-chip applications require to establish a controlled spatial concentration gradient of (chemical) species, for example for iso-electrical focusing or to study chemotactic properties of cells. We show that covering a microchannel floor with special grooves or ridges, well-controlled concentration gradients can be created, depending on the geometrical design of the grooves or ridges. In our case, the pattern consists of ridges that are slanted with respect to the main channel direction. Similar patterns have been applied in the past to achieve mixing by introducing chaotic advection. We present experimental and numerical results that prove the mixing effectiveness of the ridges. In addition, making use of the local mixing capabilities of theridge patterns, we show, using numerical simulations, how to achieve a concentration gradient across a microfluidic channel.
- Published
- 2011
6. Lipid and protein dynamics in model membranes
- Author
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Kahya, N., Wiersma, D. A., Poolman, B., and Zernike Institute for Advanced Materials
- Published
- 2003
7. On the mechanism of protein-induced membrane fusion: from model to biological membranes
- Author
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Hoekstra, D., Martin, I., Kahya, N., Ruysschaert, Jm, Pecheur, E., Institut de biologie et chimie des protéines [Lyon] (IBCP), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), University of Groningen, Nanotechnology and Biophysics in Medicine (NANOBIOMED), and Deleage, Gilbert
- Subjects
[SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology ,PEPTIDE ,[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology - Abstract
International audience; xxx
- Published
- 2002
8. A multicolor femtosecond lightsource for (multiphoton) confocal fluorescence microscopy
- Author
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Potma, E.O, Kahya, N., de Boeij, W.P., Wiersma, D. A., Faculty of Science and Engineering, and Zernike Institute for Advanced Materials
- Published
- 1999
9. Formal analysis of PKM using scyther tool
- Author
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Kahya, N., primary, Ghoualmi, N., additional, and Lafourcade, P., additional
- Published
- 2012
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10. Light on fluorescent lipids in rafts: a lesson from model membranes
- Author
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Kahya, N., primary
- Published
- 2010
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11. On the mechanism of protein-induced membrane fusion: from model to biological membranes
- Author
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Hoekstra, D, Martin, Isabelle, Kahya, N., Ruysschaert, Jean Marie, Pécheur, E I, Hoekstra, D, Martin, Isabelle, Kahya, N., Ruysschaert, Jean Marie, and Pécheur, E I
- Abstract
info:eu-repo/semantics/published
- Published
- 2002
12. EFFECT OF DIFFERENT LIPIDS ON GENE EXPRESSION PROFILING OF ATHEROSCLEROTIC FOAM CELL FORMATION BY LOW DENSITY LIPOPROTEIN
- Author
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Kahya, N., primary and Tam, N., additional
- Published
- 2008
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13. 1412 Atherosclerotic coronary artery involvement in obese patients: A study in a selected group of patients
- Author
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Tapkýn, N., primary, Karaduman, N., additional, Kýnay, O., additional, Nazlý, C., additional, Ergene, O., additional, Kýlýçarslan, B., additional, Vatansever, F., additional, and Kahya, N., additional
- Published
- 2008
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14. Mobility of Min-proteins inEscherichia colimeasured by fluorescence correlation spectroscopy
- Author
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Meacci, G, primary, Ries, J, additional, Fischer-Friedrich, E, additional, Kahya, N, additional, Schwille, P, additional, and Kruse, K, additional
- Published
- 2006
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15. Dehydration Damage of Domain-Exhibiting Supported Bilayers: An AFM Study on the Protective Effects of Disaccharides and Other Stabilizing Substances
- Author
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Chiantia, S., Kahya, N., and Schwille, P.
- Abstract
Atomic force microscopy (AFM) has been applied to characterize hydrated sphingomyelin/dioleoylphosphatidylcholine/cholesterol supported bilayers, after dehydration either in the absence or in the presence of several stabilizing substances. Such a study provides information about the effect of extreme environmental conditions on biological membranes and, in particular, on lipidic microdomains. Dehydration stress, indeed, is thought to cause both macroscopical damage and alterations of microdomains in biomembranes, leading to deleterious effects. These phenomena can be avoided if disaccharides are added during dehydration. In this work, we apply AFM imaging to directly visualize damage caused to supported lipid bilayers by water removal. We compare the efficiency of sucrose, trehalose, dextran, dimethyl sulfoxide, and glucose in preserving the structural integrity of domain-exhibiting model membranes. Finally, in addition to confirming previous findings, our results provide further insight into damage and alteration of microdomains in membranes as a consequence of stressful drying conditions.
- Published
- 2005
16. Atherosclerotic coronary artery involvement in obese patients: A study in a selected group of patients
- Author
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Taþkýn, N., Karaduman, N., Kýnay, O., Nazlý, C., Ergene, O., Kýlýçarslan, B., Vatansever, F., and Kahya, N.
- Published
- 2008
- Full Text
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17. Mobility of Min-proteins in Escherichia coli measured by fluorescence correlation spectroscopy.
- Author
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Meacci, G., Ries, J., Fischer-Friedrich, E., Kahya, N., Schwille, P., and Kruse, K.
- Published
- 2006
- Full Text
- View/download PDF
18. Silver Nanowire-Coated Porous Alginate Films for Wound Dressing Applications: Antibacterial Activity, Cell Proliferation, and Physical Characterization.
- Author
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Kahya N, Kartun A, Korkut IN, Usta C, Kuruca DS, and Gürarslan A
- Abstract
In the present study, porous calcium alginate films have been developed by the addition of 0.02, 0.1, and 0.5% (w/v) PVA to sodium alginate film solutionss. Poly(vinyl) alcohol played the role of a pore-forming agent for calcium alginate films, and the controlled pore sizes of the films were investigated by scanning electron microscopy and Fourier transform infrared spectroscopy analyses. Human fibroblast cell attachment was performed on the porous calcium alginate films (0.5-Ca-Alg), and then the film was coated with 1 and 3 wt % silver nanowires. Cell proliferation was enhanced on films after the coating of the silver nanowires. The MTT assay was performed on the calcium alginate films and silver nanowire-coated films, and the films were found to be nontoxic to human foreskin fibroblast cells at the end of 72 h of exposure. The existence of silver nanowires on the porous calcium alginate film endowed the material with good antibacterial activity. The swelling ability of the porous and silver nanowire-coated film (0.5-Ca-Alg-1/AgNW) increased by ∼64% in simulated body fluid (pH = 7.4) and distilled water compared to a nonporous film (Ca-Alg). The water vapor transmission rate of Ca-Alg was ∼45% enhanced thanks to the porosity of films and the existence of AgNW. Hereby, it is demonstrated that the novel silver nanowire-doped porous alginate materials would be potential wound dressing agents with desired physical properties, antibacterial activity, and availability to cell proliferation., Competing Interests: The authors declare no competing financial interest., (© 2024 The Authors. Published by American Chemical Society.)
- Published
- 2024
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19. Comparison of Dye Adsorption of Chitosan and Polyethylenimine Modified Bentonite Clays: Optimization, Isotherm, and Kinetic Studies.
- Author
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Kahya N, Şen B, Berber D, and Öztekin N
- Abstract
The aim of this study was to compare the effect of modifying calcium bentonite (Bent-Ca) clay with two cationic polymers, chitosan (Chi) and polyethylenimine (PEI), on the removal of remazol black B (RB-B) dye from an aqueous solution. The samples were characterized by using scanning electron microscopy, X-ray diffraction, and Fourier-transform infrared spectroscopy. The fractional factorial design of 2
(6-1) was applied to investigate the effects of pH, temperature, amount of adsorbent, initial dye concentration, contact time, and shaking rate on the adsorption process. To further optimize RB-B removal from an aqueous solution, a Box-Behnken design with three factors and a response surface methodology was used. The optimum conditions were a pH of 3.77, a temperature of 40.45 °C, and an initial RB-B concentration of 77.27 mg L-1 for Bent-Ca-Chi, whereas for Bent-Ca-PEI, the optimum conditions were a pH of 5.53, a temperature of 41.06 °C, and an initial dye concentration of 238.89 mg L-1 . To understand the adsorption behavior, the Langmuir and Freundlich isotherms were fitted to the experimental data. It was found that the Langmuir isotherm model matched well with the dye adsorption by Bent-Ca-Chi and Bent-Ca-PEI. The kinetics study was performed using three kinetic models: pseudo-first-order, pseudo-second-order, and intraparticle diffusion models. Among these models, the RB-B dye kinetics were best represented by the pseudo-second-order model equation for the adsorbents., Competing Interests: The authors declare no competing financial interest., (© 2024 The Authors. Published by American Chemical Society.)- Published
- 2024
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20. Removal of fluoride ions from water by cerium-carboxymethyl cellulose beads doped with CeO 2 nanoparticles.
- Author
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Kahya N and Erim FB
- Subjects
- Water chemistry, Fluorides, Carboxymethylcellulose Sodium chemistry, Kinetics, Adsorption, Hydrogen-Ion Concentration, Cerium chemistry, Water Purification methods, Nanoparticles, Water Pollutants, Chemical chemistry
- Abstract
A novel adsorbent for fluoride ions (F
- ) removal was prepared from cerium ion cross-linked carboxymethyl cellulose (CMC) biopolymer beads loaded with CeO2 nanoparticles (NPs). The characterization of the beads was performed by swelling experiments, scanning electron microscopy and Fourier transforms infrared spectroscopy. The adsorption of fluoride ions from aqueous solutions was carried out with both cerium ion cross-linked CMC beads (CMCCe) and CeO2 -NPs added beads (CeO2 -CMC-Ce) in a batch system. Optimized adsorption conditions were obtained by testing the parameters such as pH, contact time, adsorbent dose, and shaking rate at 25 °C. The adsorption process is well described by the Langmuir isotherm and pseudo-second-order kinetics. The maximum adsorption capacity was found as 105 and 312 mg/g F- for CMC-Ce and CeO2 -CMC-Ce beads, respectively. Reusability studies showed that, the adsorbent beads have exhibited excellent sustainable properties up to 9 cycle usage. This study suggests that, CMC-Ce composite with CeO2 nanoparticles is a very effective adsorbent in removing fluoride from water., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier B.V. All rights reserved.)- Published
- 2023
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21. Antioxidant and antimicrobial chitosan films enriched with aqueous sage and rosemary extracts as food coating materials: Characterization of the films and detection of rosmarinic acid release.
- Author
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Kahya N, Kestir SM, Öztürk S, Yolaç A, Torlak E, Kalaycıoğlu Z, Akın-Evingür G, and Erim FB
- Subjects
- Anti-Bacterial Agents chemistry, Anti-Bacterial Agents pharmacology, Antioxidants chemistry, Antioxidants pharmacology, Cinnamates, Depsides, Food Packaging, Permeability, Plant Extracts chemistry, Plant Extracts pharmacology, Rosmarinic Acid, Anti-Infective Agents pharmacology, Chitosan chemistry, Rosmarinus chemistry
- Abstract
Chitosan films containing aqueous extracts of sage and rosemary were prepared as a potential food coating material with antioxidant and antibacterial properties. The effect of adding extracts at different concentrations on the mechanical, physical, and optical properties of the films was investigated. The addition of the extracts significantly increased Young's modulus values of the films compared to the chitosan film, and a significant decrease was observed in the swelling percentage and water vapor permeability of the films. Since all the prepared films were ionically cross-linked, the increase in water solubility of the films with the addition of the extract was at a low level. The release of rosmarinic acid, which is found in significant amounts in both plants, from the films was monitored by the capillary electrophoresis. The antioxidant properties imparted to the films by the addition of plant extracts were determined by DPPH and FRAP methods. The addition of plant extracts increased the antimicrobial property of chitosan films against Staphylococcus aureus and Escherichia coli. Films containing sage and rosemary extracts showed potential for use as food coating materials., (Copyright © 2022 Elsevier B.V. All rights reserved.)
- Published
- 2022
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22. Surfactant modified alginate composite gels for controlled release of protein drug.
- Author
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Kahya N and Erim FB
- Subjects
- Animals, Cattle, Delayed-Action Preparations, Drug Liberation, Gels, Microspheres, Serum Albumin, Bovine therapeutic use, Alginates chemistry, Drug Carriers chemistry, Serum Albumin, Bovine chemistry, Sodium Dodecyl Sulfate chemistry, Surface-Active Agents chemistry
- Abstract
This study aims to modify alginate with sodium dodecyl sulfate (SDS) to reduce the release of oral protein in the acidic stomach environment and transport it to the colon medium. Bovine serum albumin (BSA), which was chosen as a model protein, was loaded into surfactant modified calcium alginate beads (SDS/Ca-Alg). The encapsulation efficiency of BSA in SDS/Ca-Alg beads was found significantly higher (96.3%) compared to that of beads without SDS. The most remarkable result is that protein release from the modified gel in the stomach environment was significantly reduced compared to protein release from the plain alginate gel. At the same time, the release time of the whole drug in the intestinal environment was significantly prolonged. The SDS-modified alginate beads are proposed as suitable carriers for the passage of orally taken protein-type drugs into the colon medium by preventing their degradation in acidic gastric fluid., (Copyright © 2019 Elsevier Ltd. All rights reserved.)
- Published
- 2019
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23. Oligodendroglial membrane dynamics in relation to myelin biogenesis.
- Author
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Ozgen H, Baron W, Hoekstra D, and Kahya N
- Subjects
- Animals, Cell Membrane metabolism, Galactosylceramides chemistry, Galactosylceramides metabolism, Membrane Fluidity physiology, Myelin Basic Protein chemistry, Oligodendroglia cytology, Protein Interaction Domains and Motifs, Sulfoglycosphingolipids chemistry, Sulfoglycosphingolipids metabolism, Myelin Basic Protein metabolism, Oligodendroglia metabolism
- Abstract
In the central nervous system, oligodendrocytes synthesize a specialized membrane, the myelin membrane, which enwraps the axons in a multilamellar fashion to provide fast action potential conduction and to ensure axonal integrity. When compared to other membranes, the composition of myelin membranes is unique with its relatively high lipid to protein ratio. Their biogenesis is quite complex and requires a tight regulation of sequential events, which are deregulated in demyelinating diseases such as multiple sclerosis. To devise strategies for remedying such defects, it is crucial to understand molecular mechanisms that underlie myelin assembly and dynamics, including the ability of specific lipids to organize proteins and/or mediate protein-protein interactions in healthy versus diseased myelin membranes. The tight regulation of myelin membrane formation has been widely investigated with classical biochemical and cell biological techniques, both in vitro and in vivo. However, our knowledge about myelin membrane dynamics, such as membrane fluidity in conjunction with the movement/diffusion of proteins and lipids in the membrane and the specificity and role of distinct lipid-protein and protein-protein interactions, is limited. Here, we provide an overview of recent findings about the myelin structure in terms of myelin lipids, proteins and membrane microdomains. To give insight into myelin membrane dynamics, we will particularly highlight the application of model membranes and advanced biophysical techniques, i.e., approaches which clearly provide an added value to insight obtained by classical biochemical techniques.
- Published
- 2016
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24. The lateral membrane organization and dynamics of myelin proteins PLP and MBP are dictated by distinct galactolipids and the extracellular matrix.
- Author
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Ozgen H, Schrimpf W, Hendrix J, de Jonge JC, Lamb DC, Hoekstra D, Kahya N, and Baron W
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- Animals, Cell Line, Fibronectins physiology, Laminin physiology, Protein Transport, Rats, Extracellular Matrix metabolism, Galactolipids metabolism, Membrane Microdomains metabolism, Myelin Basic Protein metabolism, Myelin Proteolipid Protein metabolism
- Abstract
In the central nervous system, lipid-protein interactions are pivotal for myelin maintenance, as these interactions regulate protein transport to the myelin membrane as well as the molecular organization within the sheath. To improve our understanding of the fundamental properties of myelin, we focused here on the lateral membrane organization and dynamics of peripheral membrane protein 18.5-kDa myelin basic protein (MBP) and transmembrane protein proteolipid protein (PLP) as a function of the typical myelin lipids galactosylceramide (GalC), and sulfatide, and exogenous factors such as the extracellular matrix proteins laminin-2 and fibronectin, employing an oligodendrocyte cell line, selectively expressing the desired galactolipids. The dynamics of MBP were monitored by z-scan point fluorescence correlation spectroscopy (FCS) and raster image correlation spectroscopy (RICS), while PLP dynamics in living cells were investigated by circular scanning FCS. The data revealed that on an inert substrate the diffusion rate of 18.5-kDa MBP increased in GalC-expressing cells, while the diffusion coefficient of PLP was decreased in sulfatide-containing cells. Similarly, when cells were grown on myelination-promoting laminin-2, the lateral diffusion coefficient of PLP was decreased in sulfatide-containing cells. In contrast, PLP's diffusion rate increased substantially when these cells were grown on myelination-inhibiting fibronectin. Additional biochemical analyses revealed that the observed differences in lateral diffusion coefficients of both proteins can be explained by differences in their biophysical, i.e., galactolipid environment, specifically with regard to their association with lipid rafts. Given the persistence of pathological fibronectin aggregates in multiple sclerosis lesions, this fundamental insight into the nature and dynamics of lipid-protein interactions will be instrumental in developing myelin regenerative strategies.
- Published
- 2014
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25. Regulation of cell proliferation by nucleocytoplasmic dynamics of postnatal and embryonic exon-II-containing MBP isoforms.
- Author
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Ozgen H, Kahya N, de Jonge JC, Smith GS, Harauz G, Hoekstra D, and Baron W
- Subjects
- Animals, Brain metabolism, Cell Growth Processes physiology, Cells, Cultured, Oligodendroglia metabolism, Rats, Rats, Wistar, Stem Cells metabolism, Active Transport, Cell Nucleus physiology, Cell Nucleus metabolism, Cytoplasm metabolism, Myelin Basic Protein metabolism, Protein Isoforms metabolism
- Abstract
The only known structural protein required for formation of myelin, produced by oligodendrocytes in the central nervous system, is myelin basic protein (MBP). This peripheral membrane protein has different developmentally-regulated isoforms, generated by alternative splicing. The isoforms are targeted to distinct subcellular locations, which is governed by the presence or absence of exon-Il, although their functional expression is often less clear. Here, we investigated the role of exon-Il-containing MBP isoforms and their link with cell proliferation. Live-cell imaging and FRAP analysis revealed a dynamic nucleocytoplasmic translocation of the exon-II-containing postnatal 21.5-kDa MBP isoform upon mitogenic modulation. Its nuclear export was blocked upon treatment with leptomycin B, an inhibitor of nuclear protein export. Next to the postnatal MBP isoforms, embryonic exon-II-containing MBP (e-MBP) is expressed in primary (immature) oligodendrocytes. The e-MBP isoform is exclusively present in OLN-93 cells, a rat-derived oligodendrocyte progenitor cell line, and interestingly, also in several non-CNS cell lines. As seen for postnatal MBPs, a similar nucleocytoplasmic translocation upon mitogenic modulation was observed for e-MBP. Thus, upon serum deprivation, e-MBP was excluded from the nucleus, whereas re-addition of serum re-established its nuclear localization, with a concomitant increase in proliferation. Knockdown of MBP by shRNA confirmed a role for e-MBP in OLN-93 proliferation, whereas the absence of e-MBP similarly reduced the proliferative capacity of non-CNS cell lines. Thus, exon-Il-containing MBP isoforms may regulate cell proliferation via a mechanism that relies on their dynamic nuclear import and export, which is not restricted to the oligodendrocyte lineage.
- Published
- 2014
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26. Self-segregation of myelin membrane lipids in model membranes.
- Author
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Yurlova L, Kahya N, Aggarwal S, Kaiser HJ, Chiantia S, Bakhti M, Pewzner-Jung Y, Ben-David O, Futerman AH, Brügger B, and Simons M
- Subjects
- Animals, Diffusion, Fatty Acids analysis, Membrane Lipids chemistry, Membranes metabolism, Mice, Mice, Inbred C57BL, Mice, Knockout, Mice, Neurologic Mutants, Sphingolipids metabolism, Tissue Extracts, Membrane Lipids metabolism, Models, Biological, Myelin Sheath metabolism
- Abstract
Rapid conduction of nerve impulses requires coating of axons by myelin sheaths, which are multilamellar, lipid-rich membranes produced by oligodendrocytes in the central nervous system. To act as an insulator, myelin has to form a stable and firm membrane structure. In this study, we have analyzed the biophysical properties of myelin membranes prepared from wild-type mice and from mouse mutants that are unable to form stable myelin. Using C-Laurdan and fluorescence correlation spectroscopy, we find that lipids are tightly organized and highly ordered in myelin isolated from wild-type mice, but not from shiverer and ceramide synthase 2 null mice. Furthermore, only myelin lipids from wild-type mice laterally segregate into physically distinct lipid phases in giant unilamellar vesicles in a process that requires very long chain glycosphingolipids. Taken together, our findings suggest that oligodendrocytes exploit the potential of lipids to self-segregate to generate a highly ordered membrane for electrical insulation of axons., (Copyright © 2011 Biophysical Society. Published by Elsevier Inc. All rights reserved.)
- Published
- 2011
- Full Text
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27. Protein-protein and protein-lipid interactions in domain-assembly: lessons from giant unilamellar vesicles.
- Author
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Kahya N
- Subjects
- Membrane Microdomains metabolism, Membrane Proteins metabolism, Models, Biological, Membrane Microdomains chemistry, Membrane Proteins chemistry, Models, Chemical, Unilamellar Liposomes chemistry
- Abstract
Giant Unilamellar Vesicles (GUVs) provide a key model membrane system to study lipid-lipid and lipid-protein interactions, which are relevant to vital cellular processes, by (single-molecule) optical microscopy. Here, we review the work on reconstitution techniques for membrane proteins and other preparation methods for developing GUVs towards most suitable close-to-native membrane systems. Next, we present a few applications of protein-containing GUVs to study domain assembly and protein partitioning into raft-like domains., (Copyright 2010 Elsevier B.V. All rights reserved.)
- Published
- 2010
- Full Text
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28. Reconstitution and anchoring of cytoskeleton inside giant unilamellar vesicles.
- Author
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Merkle D, Kahya N, and Schwille P
- Subjects
- Actin Cytoskeleton metabolism, Animals, Ankyrins metabolism, Brain cytology, Ion Channels metabolism, Membrane Proteins metabolism, Spectrin metabolism, Swine, Cytoskeleton metabolism, Unilamellar Liposomes metabolism
- Abstract
Among the requirements for all life forms is the ability to self-replicate. In eukaryotic cellular systems, this division is achieved through cytokinesis, and is facilitated by the (re)arrangement and interaction of cytoskeletal proteins with lipids and other proteins localized to the plasma membrane. A fascinating challenge of modern synthetic biology is the bottom-up reconstitution of such processes for the generation of an artificial cell. One crucial step towards this goal is the functional reconstitution of the protein-anchoring machinery to facilitate cytokinesis into lipid vesicles. True to the ideal of a minimal cell-like system, we here describe the formation of an actin-based cytoskeleton within giant unilamellar vesicles (GUVs) made from porcine brain lipid extracts. We demonstrate that the actin filaments are localised and anchored to the interior walls of the GUVs through the spectrin/ankyrin proteins, and produce tightly packed actin bundles. These studies allow for the examination of cytoskeletal rearrangements within a cell-like model membrane system and represent important first steps in reconstituting the minimal machinery required for the division of an artificial cell. In addition, the study of such minimal systems can shed light on protein functions that are commonly unobservable or hidden within the overwhelming complexity of cells.
- Published
- 2008
- Full Text
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29. Raft domain reorganization driven by short- and long-chain ceramide: a combined AFM and FCS study.
- Author
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Chiantia S, Kahya N, and Schwille P
- Subjects
- Cholesterol chemistry, Models, Molecular, Phosphatidylcholines chemistry, Protein Kinases chemistry, Protein Structure, Tertiary physiology, Sphingomyelins chemistry, TOR Serine-Threonine Kinases, Viscosity, Ceramides chemistry, Lipid Bilayers chemistry, Membrane Fluidity, Membrane Microdomains chemistry, Microscopy, Atomic Force, Spectrometry, Fluorescence
- Abstract
Naturally occurring long-chain ceramides (Cer) are known to alter the lateral organization of biological membranes. In particular, they produce alterations of microdomains that are involved in several cellular processes, ranging from apoptosis to immune response. In order to induce similar biological effects, short-chain Cer are extensively used in in vivo experiments to replace their long-chain analogues. In this work, we used the combined approach of atomic force microscopy (AFM) and fluorescence correlation spectroscopy (FCS) to investigate the effect of Cer chain length in lipid bilayers composed of sphingomyelin, dioleoyl-phosphatidylcholine, and cholesterol. Our results show that only long-chain Cer, like C18 and C16, are able to segregate from the liquid-ordered phase, forming separate Cer-enriched domains. Conversely, short-chain Cer do not form a separate phase but alter the physical properties of the liquid-ordered domains, decreasing their stability and viscosity and perturbing the lipid packing. These differences may contribute to the explanation of the different physiological effects that are often observed for the long- and short-chain Cer.
- Published
- 2007
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30. Combined AFM and two-focus SFCS study of raft-exhibiting model membranes.
- Author
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Chiantia S, Ries J, Kahya N, and Schwille P
- Subjects
- Biophysics methods, Cholesterol chemistry, Fluorescent Dyes pharmacology, Lipid Bilayers chemistry, Liposomes chemistry, Microscopy, Confocal, Models, Chemical, Phosphatidylcholines chemistry, Spectrometry, Fluorescence instrumentation, Sphingomyelins chemistry, Temperature, Time Factors, Chemistry, Physical methods, Membrane Microdomains chemistry, Microscopy, Atomic Force methods, Spectrometry, Fluorescence methods
- Abstract
Dioleoylphosphatidylcholine/sphingomyelin/cholesterol (DOPC/SM/cholesterol) model membranes exhibit liquid-liquid phase separation and therefore provide a physical model for the putative liquid-ordered domains present in cells. Here we present a combination of atomic force microscopy (AFM) imaging, force measurements, confocal fluorescence imaging and two-focus scanning fluorescence correlation spectroscopy (two-focus SFCS) to obtain structural and dynamical information about this model membrane system. Partition coefficients and diffusion coefficients in the different phases were measured with two-focus SFCS for numerous fluorescent lipid analogues and proteins, while being directly related to the lateral organization of the membrane and its mechanical properties probed by AFM. Moreover we show how the combination of these different approaches is effective in reducing artifacts resulting from the use of a single technique.
- Published
- 2006
- Full Text
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31. How phospholipid-cholesterol interactions modulate lipid lateral diffusion, as revealed by fluorescence correlation spectroscopy.
- Author
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Kahya N and Schwille P
- Subjects
- Diffusion, Glycerophospholipids chemistry, Liposomes chemistry, Membrane Lipids chemistry, Microscopy, Confocal, Phosphatidylcholines chemistry, Spectrometry, Fluorescence, Thermodynamics, Cholesterol chemistry, Phospholipids chemistry
- Abstract
Cholesterol is a key player in regulating physico-chemical properties of cellular membranes and, thereby, ensuring cell viability. In particular, lipid-cholesterol interactions may provide important information on the spatio-temporal organization of membrane components. Here, we apply confocal imaging and Fluorescence Correlation Spectroscopy (FCS) to Giant Unilamellar Vesicles (GUVs) composed of binary mixtures of lipids and cholesterol. The effect of cholesterol on lipid dynamics and molecular packing order of unsaturated, monounsaturated, fully saturated (with both low and high phase transition temperatures, Tm) glycero-phospholipids and sphingomyelin has been investigated. We show that, for unsaturated glycerophospholipids, the decrease of the lipid diffusion coefficient as a result of the interaction with cholesterol does not depend on the fatty acid chain length. However, the values of the diffusion coefficient change as a function of chain length. The monounsaturated phospholipid palmitoyl-oleoyl-phosphatidylcholine (POPC) exhibits a dynamic behavior very similar to the unsaturated dioleoyl-phosphatidylcholine (DOPC). By contrast, for saturated (low Tm) glycero-phospholipids, cholesterol causes a decrease of lipid mobility in a chain length-dependent manner. FCS can be employed as a valuable tool to study lipid-sterol interactions and their effect on lipid dynamics, molecular packing and degree of conformational order.
- Published
- 2006
- Full Text
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32. Effects of ceramide on liquid-ordered domains investigated by simultaneous AFM and FCS.
- Author
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Chiantia S, Kahya N, Ries J, and Schwille P
- Subjects
- Molecular Conformation, Solutions, Ceramides chemistry, Lipid Bilayers chemistry, Membrane Fluidity, Membrane Microdomains chemistry, Microscopy, Atomic Force, Phosphatidylcholines chemistry, Spectrometry, Fluorescence
- Abstract
The sphingolipid ceramides are known to influence lipid lateral organization in biological membranes. In particular, ceramide-induced alterations of microdomains can be involved in several cell functions, ranging from apoptosis to immune response. We used a combined approach of atomic force microscopy, fluorescence correlation spectroscopy, and confocal fluorescence imaging to investigate the effects of ceramides in model membranes of biological relevance. Our results show that physiological quantities of ceramide in sphingomyelin/dioleoylphosphatidylcholine/cholesterol supported bilayers lead to a significant rearrangement of lipid lateral organization. Our experimental setup allowed a simultaneous characterization of both structural and dynamic modification of membrane microdomains, induced by the presence of ceramide. Formation of similar ceramide-enriched domains and, more general, alterations of lipid-lipid interactions can be of crucial importance for the biological function of cell membranes.
- Published
- 2006
- Full Text
- View/download PDF
33. Targeting membrane proteins to liquid-ordered phases: molecular self-organization explored by fluorescence correlation spectroscopy.
- Author
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Kahya N
- Subjects
- Cholesterol chemistry, Cholesterol metabolism, Lipid Bilayers metabolism, Lipid Metabolism, Membrane Proteins metabolism, Phase Transition, Phosphatidylcholines chemistry, Phosphatidylcholines metabolism, Sphingomyelins chemistry, Sphingomyelins metabolism, Lipid Bilayers chemistry, Membrane Microdomains metabolism, Membrane Proteins chemistry, Microscopy, Fluorescence methods, Transport Vesicles metabolism
- Abstract
The complex and dynamic architecture of biological membranes comprises of various heterogeneities, some of which may include lipid-based and/or protein-based microdomains called "rafts". Due to interactions among membrane components, several types of domains can form with different characteristics and mechanisms of formation. Model membranes, such as giant unilamellar vesicles (GUVs), provide a key system to study lipid-lipid and lipid-protein interactions, which are potentially relevant to raft formation, by (single-molecule) optical microscopy. Here, we review studies of combined confocal imaging and fluorescence correlation spectroscopy (FCS) on lipid dynamics and organization in domains assembled in GUVs, prepared from various lipid mixtures, which are relevant to the problem of raft formation. Finally, we summarize the results on lipid-protein interactions, which govern the targeting of several putative raft- and non-raft-associated membrane proteins to domain-exhibiting GUVs.
- Published
- 2006
- Full Text
- View/download PDF
34. Fluorescence correlation studies of lipid domains in model membranes.
- Author
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Kahya N and Schwille P
- Subjects
- Animals, Biophysical Phenomena, Biophysics, Cholesterol chemistry, Humans, In Vitro Techniques, Liposomes chemistry, Membrane Microdomains chemistry, Membrane Proteins chemistry, Microscopy, Confocal, Microscopy, Fluorescence, Phospholipids chemistry, Membrane Lipids chemistry, Membranes, Artificial
- Abstract
Advances in optical microscopy techniques and single-molecule detection have paved the way to exploring new approaches for investigating membrane dynamics and organization, thereby revealing details on the processing of signals, complex association/dissociation, chemical reactions and transport at and around the membrane. These events rely on a tight regulation of lipid-protein and protein-protein interactions in space and time. Fluorescence Correlation Spectroscopy (FCS) provides exquisite sensitivity in measuring local concentrations, association/dissociation constants, chemical rate constants and, in general, in probing the chemical environment of the species of interest and its interactions with potential partners. Here, we review some applications of FCS to lipid and protein organization in biomimetic membranes with lateral heterogeneities, which share some physico-chemical properties with cellular rafts. What we learn from investigations of lipid-lipid and lipid-protein interactions in simple model membranes can be regarded as an essential basic lecture for studies in more complex cellular membranes.
- Published
- 2006
- Full Text
- View/download PDF
35. Lipids as modulators of proteolytic activity of BACE: involvement of cholesterol, glycosphingolipids, and anionic phospholipids in vitro.
- Author
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Kalvodova L, Kahya N, Schwille P, Ehehalt R, Verkade P, Drechsel D, and Simons K
- Subjects
- Amyloid Precursor Protein Secretases, Aspartic Acid Endopeptidases, Baculoviridae genetics, Endopeptidases genetics, Humans, In Vitro Techniques, Recombinant Proteins chemistry, Recombinant Proteins genetics, Recombinant Proteins metabolism, Amyloid beta-Peptides metabolism, Cerebrosides metabolism, Cholesterol metabolism, Endopeptidases metabolism, Glycosphingolipids metabolism, Phosphatidylserines metabolism
- Abstract
The beta-secretase, BACE, is a membrane spanning aspartic protease, which cleaves the amyloid precursor protein (APP) in the first step of proteolytic processing leading to the formation of the neurotoxic beta-amyloid peptide (Abeta). Previous results have suggested that the regulation of beta-secretase and BACE access to APP is lipid dependent, and involves lipid rafts. Using the baculovirus expression system, we have expressed recombinant human full-length BACE in insect cells and purified milligram amounts to homogeneity. We have studied partitioning of fluorophor-conjugated BACE between the liquid ordered and disordered phases in giant (10-150 mum) unilamellar vesicles, and found approximately 20% to associate with the raft-like, liquid-ordered phase; the fraction associated with liquid-ordered phase increased upon cross-linking of raft lipids. To examine involvement of individual lipid species in modulating BACE activity, we have reconstituted the purified BACE in large ( approximately 100 nm) unilamellar vesicles, and determined its specific activity in vesicles of various lipid compositions. We have identified 3 groups of lipids that stimulate proteolytic activity of BACE: 1) neutral glycosphingolipids (cerebrosides), 2) anionic glycerophospholipids, and 3) sterols (cholesterol).
- Published
- 2005
- Full Text
- View/download PDF
36. Differential lipid packing abilities and dynamics in giant unilamellar vesicles composed of short-chain saturated glycerol-phospholipids, sphingomyelin and cholesterol.
- Author
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Kahya N, Scherfeld D, and Schwille P
- Subjects
- Cholesterol, Glycerophospholipids, Microscopy, Fluorescence, Sphingomyelins, Lipids chemistry, Liposomes chemistry, Membrane Microdomains chemistry
- Abstract
The ability of membrane components to arrange themselves heterogeneously within the bilayer induces the formation of microdomains. Much work has been devoted to mimicking domain-assembly in artificial bilayers and characterizing their physico-chemical properties. Ternary lipid mixtures composed of unsaturated phospholipids, sphingomyelin and cholesterol give rise to large, round domains. Here, we replaced the unsaturated phospholipid in the ternary mixture with sphingomyelin and cholesterol by saturated glycero-phospholipids of different chain length and characterized the critical role of cholesterol in sorting these lipids by confocal imaging and fluorescence correlation spectroscopy (FCS). More cholesterol is needed to obtain phase segregation in ternary mixtures, in which the unsaturated phospholipid is replaced by a saturated one. Finally, lipid dynamics in distinct phases is very low and astonishingly similar, thereby suggesting the poor ability of cholesterol in sorting short-chain saturated glycero-phospholipids and sphingomyelin.
- Published
- 2005
- Full Text
- View/download PDF
37. Raft partitioning and dynamic behavior of human placental alkaline phosphatase in giant unilamellar vesicles.
- Author
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Kahya N, Brown DA, and Schwille P
- Subjects
- Alkaline Phosphatase immunology, Alkaline Phosphatase metabolism, Animals, Binding Sites, Antibody, Cholesterol chemistry, Cross-Linking Reagents chemistry, Detergents, GPI-Linked Proteins, Humans, Immune Sera chemistry, Isoenzymes immunology, Isoenzymes metabolism, Liposomes, Microscopy, Confocal, Octoxynol chemistry, Phosphatidylcholines chemistry, Rabbits, Sphingomyelins chemistry, Temperature, Thermodynamics, Alkaline Phosphatase chemistry, Isoenzymes chemistry, Membrane Microdomains chemistry, Membranes, Artificial, Placenta enzymology
- Abstract
Much attention has recently been drawn to the hypothesis that cellular membranes organize in functionalized platforms called rafts, enriched in sphingolipids and cholesterol. The notion that glycosylphosphatidylinositol (GPI)-anchored proteins are strongly associated with rafts is based on their insolubility in nonionic detergents. However, detergent-based methodologies for identifying raft association are indirect and potentially prone to artifacts. On the other hand, rafts have proven to be difficult to visualize and investigate in living cells. A number of studies have demonstrated that model membranes provide a valuable tool for elucidating some of the raft properties. Here, we present a model membrane system based on domain-forming giant unilamellar vesicles (GUVs), in which the GPI-anchored protein, human placental alkaline phosphatase (PLAP), has been functionally reconstituted. Raft morphology, protein raft partitioning, and dynamic behavior have been characterized by fluorescence confocal microscopy and fluorescence correlation spectroscopy (FCS). Approximately 20-30% of PLAP associate with sphingomyelin-enriched domains. The affinity of PLAP for the liquid-ordered (l(o)) phase is compared to that of a nonraft protein, bacteriorhodopsin. Next, detergent extraction was carried out on PLAP-containing GUVs as a function of temperature, to relate the lipid and protein organization in distinct phases of the GUVs to the composition of detergent resistant membranes (DRMs). Finally, antibody-mediated cross-linking of PLAP induces a shift of its partition coefficient in favor of the l(o) phase.
- Published
- 2005
- Full Text
- View/download PDF
38. Characterization of interaction between cationic lipid-oligonucleotide complexes and cellular membrane lipids using confocal imaging and fluorescence correlation spectroscopy.
- Author
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Gordon SP, Berezhna S, Scherfeld D, Kahya N, and Schwille P
- Subjects
- Biological Transport, Diffusion, Lasers, Lipid Bilayers, Liposomes chemistry, Membranes, Artificial, Microscopy, Confocal, Microscopy, Fluorescence, Oligonucleotides, Antisense chemistry, Phosphatidylethanolamines chemistry, Protein Binding, Time Factors, Biophysics methods, Cations chemistry, Drug Carriers, Lipids chemistry, Oligonucleotides chemistry, Spectrometry, Fluorescence methods
- Abstract
Complexes formed by cationic liposomes and single-strand oligodeoxynucleotides (CL-ODN) are promising delivery systems for antisense therapy. ODN release from the complexes is an essential step for inhibiting activity of antisense drugs. We applied fluorescence correlation spectroscopy and confocal laser scanning microscopy to monitor CL-ODN complex interaction with membrane lipids leading to ODN release. To model cellular membranes we used giant unilamellar vesicles and investigated the transport of Cy-5-labeled ODNs across DiO-labeled membranes. For the first time, we directly observed that ODN molecules are transferred across the lipid bilayers and are kept inside the giant unilamellar vesicles after release from the carriers. ODN dissociation from the carrier was assessed by comparing diffusion constants of CL-ODN complexes and ODNs before complexation and after release. Freely diffusing Cy-5-labeled ODN (16-nt) has diffusion constant D(ODN) = 1.3 +/- 0.1 x 10(-6) cm2/s. Fluorescence correlation spectroscopy curves for CL-ODN complexes were fitted with two components, which both have significantly slower diffusion in the range of D(CL-ODN) = approximately 1.5 x 10(-8) cm2/s. Released ODN has the mean diffusion constant D = 1.1 +/- 0.2 x 10(-6) cm2/s, which signifies that ODN is dissociated from cationic lipids. In contrast to earlier studies, we report that phosphatidylethanolamine can trigger ODN release from the carrier in the full absence of anionic phosphatidylserine in the target membrane and that phosphatidylethanolamine-mediated release is as extensive as in the case of phosphatidylserine. The presented methodology provides an effective tool for probing a delivery potential of newly created lipid formulations of CL-ODN complexes for optimal design of carriers.
- Published
- 2005
- Full Text
- View/download PDF
39. SNAREs prefer liquid-disordered over "raft" (liquid-ordered) domains when reconstituted into giant unilamellar vesicles.
- Author
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Bacia K, Schuette CG, Kahya N, Jahn R, and Schwille P
- Subjects
- Exocytosis, Lipid Bilayers, Liposomes, Recombinant Proteins metabolism, SNARE Proteins, Vesicular Transport Proteins metabolism
- Abstract
Membrane domains ("rafts") have received great attention as potential platforms for proteins in signaling and trafficking. Because rafts are believed to form by cooperative lipid interactions but are not directly accessible in vivo, artificial phase-separating lipid bilayers are useful model systems. Giant unilamellar vesicles (GUVs) offer large free-standing bilayers, but suitable methods for incorporating proteins are still scarce. Here we report the reconstitution of two water-insoluble SNARE proteins into GUVs without fusogenic additives. Following reconstitution, protein functionality was assayed by confocal imaging and fluorescence auto- and cross-correlation spectroscopy. Incorporation into GUVs containing phase-separating lipids revealed that, in the absence of other cellular factors, both proteins exhibit an intrinsic preference for the liquid-disordered phase. Although the picture from detergent resistance assays on whole cells is ambiguous, reconstitutions of components of the exocytic machinery into GUVs by this new approach should yield insight into the dynamics of protein complex associations with hypothesized liquid-ordered phase microdomains, the correspondence between detergent-resistant membranes and liquid-ordered phase, and the mechanism of SNARE-mediated membrane fusion.
- Published
- 2004
- Full Text
- View/download PDF
40. Fluorescence correlation spectroscopy relates rafts in model and native membranes.
- Author
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Bacia K, Scherfeld D, Kahya N, and Schwille P
- Subjects
- Animals, Cell Line, Cholera Toxin metabolism, Gangliosides metabolism, Humans, Kidney drug effects, Kidney embryology, Membrane Microdomains chemistry, Membrane Microdomains drug effects, Membrane Microdomains ultrastructure, Membranes, Artificial, Rats, beta-Cyclodextrins chemistry, beta-Cyclodextrins pharmacology, Kidney metabolism, Leukemia, Basophilic, Acute metabolism, Lipid Bilayers metabolism, Liposomes chemistry, Membrane Microdomains metabolism, Membrane Proteins metabolism, Spectrometry, Fluorescence methods
- Abstract
The lipid raft model has evoked a new perspective on membrane biology. Understanding the structure and dynamics of lipid domains could be a key to many crucial membrane-associated processes in cells. However, one shortcoming in the field is the lack of routinely applicable techniques to measure raft association without perturbation by detergents. We show that both in cell and in domain-exhibiting model membranes, fluorescence correlation spectroscopy (FCS) can easily distinguish a raft marker (cholera toxin B subunit bound to ganglioside (GM1) and a nonraft marker (dialkylcarbocyanine dye diI)) by their decidedly different diffusional mobilities. In contrast, these markers exhibit only slightly different mobilities in a homogeneous artificial membrane. Performing cholesterol depletion with methyl-beta-cyclodextrin, which disrupts raft organization, we find an analogous effect of reduced mobility for the nonraft marker in domain-exhibiting artificial membranes and in cell membranes. In contrast, cholesterol depletion has differential effects on the raft marker, cholera toxin B subunit-GM1, rendering it more mobile in artificial domain-exhibiting membranes but leaving it immobile in cell membranes, where cytoskeleton disruption is required to achieve higher mobility. Thus, fluorescence correlation spectroscopy promises to be a valuable tool to elucidate lipid raft associations in native cells and to gain deeper insight into the correspondence between model and natural membranes.
- Published
- 2004
- Full Text
- View/download PDF
41. Lipid domain formation and dynamics in giant unilamellar vesicles explored by fluorescence correlation spectroscopy.
- Author
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Kahya N, Scherfeld D, Bacia K, and Schwille P
- Subjects
- Biological Transport physiology, Diffusion, Mathematics, Membrane Lipids chemistry, Membrane Microdomains chemistry, Spectrometry, Fluorescence instrumentation, Sphingomyelins chemistry, Sphingomyelins metabolism, Sterols chemistry, Sterols metabolism, Transport Vesicles chemistry, Membrane Lipids metabolism, Membrane Microdomains metabolism, Spectrometry, Fluorescence methods, Transport Vesicles metabolism
- Abstract
Lipids in eukaryotic cell membranes have been shown to cluster in "rafts" with different lipid/protein compositions and molecular packing. Model membranes such as giant unilamellar vesicles (GUVs) provide a key system to elucidate the physical mechanisms of raft assembly. Despite the large amount of work devoted to the detection and characterization of rafts, one of the most important pieces of information still missing in the picture of the cell membrane is dynamics: how lipids organize and move in rafts and how they modulate membrane fluidity. This missing element is of crucial importance for the trafficking at and from the periphery of the cell regulated by endo- and exocytosis and, in general, for the constant turnover which redistributes membrane components. Here, we review studies of combined confocal fluorescence microscopy and fluorescence correlation spectroscopy on lipid dynamics and organization in rafts assembled in GUVs prepared from various lipid mixtures which are relevant to the problem of raft formation.
- Published
- 2004
- Full Text
- View/download PDF
42. Lipid dynamics and domain formation in model membranes composed of ternary mixtures of unsaturated and saturated phosphatidylcholines and cholesterol.
- Author
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Scherfeld D, Kahya N, and Schwille P
- Subjects
- 1,2-Dipalmitoylphosphatidylcholine chemistry, Biophysical Phenomena, Biophysics, Cell Membrane metabolism, Cholesterol metabolism, Diffusion, Lipid Bilayers, Microscopy, Confocal, Models, Statistical, Protein Structure, Tertiary, Cholesterol chemistry, Lipids chemistry, Phosphatidylcholines chemistry
- Abstract
In recent years, the implication of sphingomyelin in lipid raft formation has intensified the long sustained interest in this membrane lipid. Accumulating evidences show that cholesterol preferentially interacts with sphingomyelin, conferring specific physicochemical properties to the bilayer membrane. The molecular packing created by cholesterol and sphingomyelin, which presumably is one of the driving forces for lipid raft formation, is known in general to differ from that of cholesterol and phosphatidylcholine membranes. However, in many studies, saturated phosphatidylcholines are still considered as a model for sphingolipids. Here, we investigate the effect of cholesterol on mixtures of dioleoyl-phosphatidylcholine (DOPC) and dipalmitoyl-phosphatidylcholine (DPPC) or distearoyl-phosphatidylcholine (DSPC) and compare it to that on mixtures of DOPC and sphingomyelin analyzed in previous studies. Giant unilamellar vesicles prepared from ternary mixtures of various lipid compositions were imaged by confocal fluorescence microscopy and, within a certain range of sterol content, domain formation was observed. The assignment of distinct lipid phases and the molecular mobility in the membrane bilayer was investigated by fluorescence correlation spectroscopy. Cholesterol was shown to affect lipid dynamics in a similar way for DPPC and DSPC when the two phospholipids were combined with cholesterol in binary mixtures. However, the corresponding ternary mixtures exhibited different spatial lipid organization and dynamics. Finally, evidences of a weaker interaction of cholesterol with saturated phosphatidylcholines than with sphingomyelin (with matched chain length) are discussed.
- Published
- 2003
- Full Text
- View/download PDF
43. Probing lipid mobility of raft-exhibiting model membranes by fluorescence correlation spectroscopy.
- Author
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Kahya N, Scherfeld D, Bacia K, Poolman B, and Schwille P
- Subjects
- Carbocyanines pharmacology, Cell Membrane metabolism, Cholesterol metabolism, Fluorescent Dyes pharmacology, Microscopy, Confocal, Microscopy, Fluorescence, Models, Statistical, Spectrometry, Fluorescence methods, Sphingomyelins chemistry, Temperature, Lipid Metabolism, Membrane Microdomains chemistry
- Abstract
Confocal fluorescence microscopy and fluorescence correlation spectroscopy (FCS) have been employed to investigate the lipid spatial and dynamic organization in giant unilamellar vesicles (GUVs) prepared from ternary mixtures of dioleoyl-phosphatidylcholine/sphingomyelin/cholesterol. For a certain range of cholesterol concentration, formation of domains with raft-like properties was observed. Strikingly, the lipophilic probe 1,1'-dioctadecyl-3,3,3',3'-tetramethylindocarbocyanine perchlorate (DiI-C18) was excluded from sphingomyelin-enriched regions, where the raft marker ganglioside GM1 was localized. Cholesterol was shown to promote lipid segregation in dioleoyl-phosphatidylcholine-enriched, liquid-disordered, and sphingomyelin-enriched, liquid-ordered phases. Most importantly, the lipid mobility in sphingomyelin-enriched regions significantly increased by increasing the cholesterol concentration. These results pinpoint the key role, played by cholesterol in tuning lipid dynamics in membranes. At cholesterol concentrations >50 mol%, domains vanished and the lipid diffusion slowed down upon further addition of cholesterol. By taking the molecular diffusion coefficients as a fingerprint of membrane phase compositions, FCS is proven to evaluate domain lipid compositions. Moreover, FCS data from ternary and binary mixtures have been used to build a ternary phase diagram, which shows areas of phase coexistence, transition points, and, importantly, how lipid dynamics varies between and within phase regions.
- Published
- 2003
- Full Text
- View/download PDF
44. Spatial organization of bacteriorhodopsin in model membranes. Light-induced mobility changes.
- Author
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Kahya N, Wiersma DA, Poolman B, and Hoekstra D
- Subjects
- Bacteriorhodopsins chemistry, Bacteriorhodopsins ultrastructure, Biological Transport, Diffusion, Dimerization, Dose-Response Relationship, Drug, Electron Spin Resonance Spectroscopy, Freeze Fracturing, Kinetics, Light, Liposomes metabolism, Microscopy, Electron, Models, Statistical, Peptides chemistry, Protons, Spectrometry, Fluorescence, Bacteriorhodopsins metabolism, Cell Membrane metabolism
- Abstract
Bacteriorhodopsin is a proton-transporting membrane protein in Halophilic archaea, and it is considered a prototype of membrane transporters and a model for G-protein-coupled receptors. Oligomerization of the protein has been reported, but it is unknown whether this feature is correlated with, for instance, light activation. Here, we have addressed this issue by reconstituting bacteriorhodopsin into giant unilamellar vesicles. The dynamics of the fully active protein was investigated using fluorescence correlation spectroscopy and freeze fracture electron microscopy. At low protein-to-lipid ratios (<1:10 w/w), a decrease in mobility was observed upon protein photoactivation. This process occurred on a second time scale and was fully reversible, i.e. when the dark-adapted state was reestablished the lateral diffusion rate of the protein was returned to that prior to activation. A similar decrease in lateral mobility as observed upon photoactivation was obtained when bacteriorhodopsin was reconstituted at high protein-to-lipid ratios (>1:10 w/w). We interpret the shifts in mobility during light adaptation as being caused by transient photoinduced oligomerization of bacteriorhodopsin. These observations are fully supported by freeze-fracture electron microscopy, and the size of the clusters during photoactivation was estimated to consist of two or three trimers.
- Published
- 2002
- Full Text
- View/download PDF
45. On the mechanism of protein-induced membrane fusion: from model to biological membranes.
- Author
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Hoekstra D, Martin I, Kahya N, Ruysschaert JM, and Pécheur E
- Subjects
- Intracellular Membranes physiology, Liposomes, Peptides metabolism, Proteins metabolism, Soluble N-Ethylmaleimide-Sensitive Factor Attachment Proteins, Adenosine Triphosphatases metabolism, Carrier Proteins metabolism, Golgi Apparatus metabolism, Intracellular Membranes metabolism, Membrane Fusion physiology, Membrane Proteins metabolism, Nuclear Proteins metabolism, Vesicular Transport Proteins
- Published
- 2002
46. Reconstitution of membrane proteins into giant unilamellar vesicles via peptide-induced fusion.
- Author
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Kahya N, Pécheur EI, de Boeij WP, Wiersma DA, and Hoekstra D
- Subjects
- Bacteriorhodopsins metabolism, Diffusion, Membrane Lipids metabolism, Microscopy, Confocal, Microscopy, Fluorescence, Microscopy, Phase-Contrast, Phosphatidylcholines metabolism, Proton Pumps metabolism, Liposomes chemistry, Liposomes metabolism, Membrane Fusion drug effects, Membrane Proteins metabolism, Peptides pharmacology
- Abstract
In this work, we present a protocol to reconstitute membrane proteins into giant unilamellar vesicles (GUV) via peptide-induced fusion. In principle, GUV provide a well-defined lipid matrix, resembling a close-to-native state for biophysical studies, including optical microspectroscopy, of transmembrane proteins at the molecular level. Furthermore, reconstitution in this manner would also eliminate potential artifacts arising from secondary interactions of proteins, when reconstituted in planar membranes supported on solid surfaces. However, assembly procedures of GUV preclude direct reconstitution. Here, for the first time, a method is described that allows the controlled incorporation of membrane proteins into GUV. We demonstrate that large unilamellar vesicles (LUV, diameter 0.1 microm), to which the small fusogenic peptide WAE has been covalently attached, readily fuse with GUV, as revealed by monitoring lipid and contents mixing by fluorescence microscopy. To monitor contents mixing, a new fluorescence-based enzymatic assay was devised. Fusion does not introduce changes in the membrane morphology, as shown by fluorescence correlation spectroscopy. Analysis of fluorescence confocal imaging intensity revealed that approximately 6 to 10 LUV fused per microm(2) of GUV surface. As a model protein, bacteriorhodopsin (BR) was reconstituted into GUV, using LUV into which BR was incorporated via detergent dialysis. BR did not affect GUV-LUV fusion and the protein was stably inserted into the GUV and functionally active. Fluorescence correlation spectroscopy experiments show that BR inserted into GUV undergoes unrestricted Brownian motion with a diffusion coefficient of 1.2 microm(2)/s. The current procedure offers new opportunities to address issues related to membrane-protein structure and dynamics in a close-to-native state.
- Published
- 2001
- Full Text
- View/download PDF
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