685 results on '"K. Soma"'
Search Results
2. Isoflurane stress induces region-specific glucocorticoid levels in neonatal mouse brain
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Jordan E Hamden, Katherine M Gray, Melody Salehzadeh, and Kiran K Soma
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Mice ,Endocrinology ,Animals, Newborn ,Isoflurane ,Endocrinology, Diabetes and Metabolism ,Animals ,Brain ,Corticosterone ,Glucocorticoids ,Stress, Psychological - Abstract
The profound programming effects of early life stress (ELS) on brain and behavior are thought to be primarily mediated by adrenal glucocorticoids (GCs). However, in mice, stressors are often administered between postnatal days 2 and 12 (PND2–12), during the stress hyporesponsive period (SHRP), when adrenal GC production is greatly reduced at baseline and in response to stressors. During the SHRP, specific brain regions produce GCs at baseline, but it is unknown if brain GC production increases in response to stressors. We treated mice at PND1 (pre-SHRP), PND5 (SHRP), PND9 (SHRP), and PND13 (post-SHRP) with an acute stressor (isoflurane anesthesia), vehicle control (oxygen), or neither (baseline). We measured a panel of progesterone and six GCs in the blood, hippocampus, cerebral cortex, and hypothalamus via liquid chromatography tandem mass spectrometry. At PND1, baseline corticosterone levels were high and did not increase in response to stress. At PND5, baseline corticosterone levels were very low, increases in brain corticosterone levels were greater than the increase in blood corticosterone levels, and stress had region-specific effects. At PND9, baseline corticosterone levels were low and increased similarly and moderately in response to stress. At PND13, blood corticosterone levels were higher than those at PND9, and corticosterone levels were higher in blood than in brain regions. These data illustrate the rapid and profound changes in stress physiology during neonatal development and suggest that neurosteroid production is a possible mechanism by which ELS has enduring effects on brain and behavior.
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- 2022
3. Psychological Impact of the COVID 19 Pandemic among College Students: A Web-Based Cross-Sectional Survey
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A. Sudheer, Abdul Ahad, K. Soma Sekhar Reddy, C. Haranath, Narayana Goruntla, Y. Kiran Kumar, N. Sai Venkat, E. Madhubala, and Bhupalam Pradeepkumar
- Abstract
The novel coronavirus (COVID-2019) has spread very rapidly all over the globe, causing an outbreak of acute infectious pneumonia. This pandemic brought not only the risk of death but also psychological pressure on people and remarkably on college students. To assess the psychological impact of COVID-19 on college students. A web-based cross-sectional study was conducted on college students studying diploma, graduation, and post-graduation irrespective of their gender was included in the study. The data was collected through online mode by providing links to fill google form. The survey tool was disseminated in various messenger groups and social media networks. The survey tool comprises demographics, COVID-19 stressors, generalized anxiety disorder scale (GAD 7), and patient health questionnaire (PHQ 9) scale. Chi-square was used to find the association between demographic characters with anxiety and depression. 443 students participated in this web-based survey. Among all participants, 44.25% were normal range, 31.38% are mild anxiety, 18.97% were moderate anxiety, and 5.42% were severe anxiety. Results also indicated that there were 37.25% participants were in normal range, about 27% were mild depression, 22.13% moderate depression, 7.45% moderately severe depression and 6.1% severe depression. All the variables other than gender, place of residence, and steady family income were significantly associated with anxiety, whereas gender and place of residence variables were not significantly associated with depression. To conclude, the mental health of college students was significantly affected by the pandemic. More help and support from society, families and colleges would be supportive to them. It is suggested that the government and colleges should collaborate to resolve this problem by providing high-quality, timely crisis oriented psychological services to college students.
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- 2022
4. Performance of novel VUV-sensitive Silicon Photo-Multipliers for nEXO
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G. Gallina, Y. Guan, F. Retiere, G. Cao, A. Bolotnikov, I. Kotov, S. Rescia, A. K. Soma, T. Tsang, L. Darroch, T. Brunner, J. Bolster, J. R. Cohen, T. Pinto Franco, W. C. Gillis, H. Peltz Smalley, S. Thibado, A. Pocar, A. Bhat, A. Jamil, D. C. Moore, G. Adhikari, S. Al Kharusi, E. Angelico, I. J. Arnquist, P. Arsenault, I. Badhrees, J. Bane, V. Belov, E. P. Bernard, T. Bhatta, P. A. Breur, J. P. Brodsky, E. Brown, E. Caden, L. Cao, C. Chambers, B. Chana, S. A. Charlebois, D. Chernyak, M. Chiu, B. Cleveland, R. Collister, M. Cvitan, J. Dalmasson, T. Daniels, K. Deslandes, R. DeVoe, M. L. di Vacri, Y. Ding, M. J. Dolinski, A. Dragone, J. Echevers, B. Eckert, M. Elbeltagi, L. Fabris, W. Fairbank, J. Farine, Y. S. Fu, D. Gallacher, P. Gautam, G. Giacomini, C. Gingras, D. Goeldi, R. Gornea, G. Gratta, C. A. Hardy, S. Hedges, M. Heffner, E. Hein, J. Holt, E. W. Hoppe, J. Hößl, A. House, W. Hunt, A. Iverson, X. S. Jiang, A. Karelin, L. J. Kaufman, R. Krücken, A. Kuchenkov, K. S. Kumar, A. Larson, K. G. Leach, B. G. Lenardo, D. S. Leonard, G. Lessard, G. Li, S. Li, Z. Li, C. Licciardi, R. Lindsay, R. MacLellan, M. Mahtab, S. Majidi, C. Malbrunot, P. Margetak, P. Martel-Dion, L. Martin, J. Masbou, N. Massacret, K. McMichael, B. Mong, K. Murray, J. Nattress, C. R. Natzke, X. E. Ngwadla, J. C. Nzobadila Ondze, A. Odian, J. L. Orrell, G. S. Ortega, C. T. Overman, S. Parent, A. Perna, A. Piepke, N. Pletskova, J. F. Pratte, V. Radeka, E. Raguzin, G. J. Ramonnye, T. Rao, H. Rasiwala, K. Raymond, B. M. Rebeiro, G. Richardson, J. Ringuette, V. Riot, T. Rossignol, P. C. Rowson, L. Rudolph, R. Saldanha, S. Sangiorgio, X. Shang, F. Spadoni, V. Stekhanov, X. L. Sun, A. Tidball, T. Totev, S. Triambak, R. H. M. Tsang, O. A. Tyuka, F. Vachon, M. Vidal, S. Viel, G. Visser, M. Wagenpfeil, M. Walent, K. Wamba, Q. Wang, W. Wang, Y. Wang, M. Watts, W. Wei, L. J. Wen, U. Wichoski, S. Wilde, M. Worcester, W. H. Wu, X. Wu, L. Xie, W. Yan, H. Yang, L. Yang, O. Zeldovich, J. Zhao, and T. Ziegler
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Physics - Instrumentation and Detectors ,Physics and Astronomy (miscellaneous) ,FOS: Physical sciences ,Instrumentation and Detectors (physics.ins-det) ,Engineering (miscellaneous) - Abstract
Liquid xenon time projection chambers are promising detectors to search for neutrinoless double beta decay (0$$\nu \beta \beta $$ ν β β ), due to their response uniformity, monolithic sensitive volume, scalability to large target masses, and suitability for extremely low background operations. The nEXO collaboration has designed a tonne-scale time projection chamber that aims to search for 0$$\nu \beta \beta $$ ν β β of $$^{136}$$ 136 Xe with projected half-life sensitivity of $$1.35\times 10^{28}$$ 1.35 × 10 28 yr. To reach this sensitivity, the design goal for nEXO is $$\le $$ ≤ 1% energy resolution at the decay Q-value ($$2458.07\pm 0.31$$ 2458.07 ± 0.31 keV). Reaching this resolution requires the efficient collection of both the ionization and scintillation produced in the detector. The nEXO design employs Silicon Photo-Multipliers (SiPMs) to detect the vacuum ultra-violet, 175 nm scintillation light of liquid xenon. This paper reports on the characterization of the newest vacuum ultra-violet sensitive Fondazione Bruno Kessler VUVHD3 SiPMs specifically designed for nEXO, as well as new measurements on new test samples of previously characterised Hamamatsu VUV4 Multi Pixel Photon Counters (MPPCs). Various SiPM and MPPC parameters, such as dark noise, gain, direct crosstalk, correlated avalanches and photon detection efficiency were measured as a function of the applied over voltage and wavelength at liquid xenon temperature (163 K). The results from this study are used to provide updated estimates of the achievable energy resolution at the decay Q-value for the nEXO design.
- Published
- 2022
5. Sex-specific effects of neonatal oral sucrose treatment on growth and liver choline and glucocorticoid metabolism in adulthood
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Angela M. Devlin, Manon Ranger, Arya E. Mehran, Ei-Xia Mussai, Joshua W. Miller, Andre Smith, Melody Salehzadeh, Liisa Holsti, Kiran K. Soma, and Cynthia Y. Ramírez-Contreras
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Male ,S-Adenosylmethionine ,Sucrose ,Standard of care ,Physiology ,Phosphorylcholine ,Neonatal pain ,Administration, Oral ,Weight Gain ,Choline ,03 medical and health sciences ,chemistry.chemical_compound ,Sex Factors ,0302 clinical medicine ,Corticosterone ,Physiology (medical) ,Animals ,Medicine ,Insulin-Like Growth Factor I ,Glucocorticoids ,030304 developmental biology ,Analgesics ,0303 health sciences ,Tibia ,business.industry ,Age Factors ,Glycerylphosphorylcholine ,Sex specific ,3. Good health ,Betaine ,Mice, Inbred C57BL ,Procedural Pain ,Animals, Newborn ,Liver ,chemistry ,Glucocorticoid metabolism ,Female ,business ,030217 neurology & neurosurgery - Abstract
Hospitalized preterm infants experience painful medical procedures. Oral sucrose is the nonpharmacological standard of care for minor procedural pain relief. Infants are treated with numerous doses of sucrose, raising concerns about potential long-term effects. The objective of this study was to determine the long-term effects of neonatal oral sucrose treatment on growth and liver metabolism in a mouse model. Neonatal female and male mice were randomly assigned to one of two oral treatments ( n = 7–10 mice/group/sex): sterile water or sucrose. Pups were treated 10 times/day for the first 6 days of life with 0.2 mg/g body wt of respective treatments (24% solution; 1–4 μL/dose) to mimic what is given to preterm infants. Mice were weaned at age 3 wk onto a control diet and fed until age 16 wk. Sucrose-treated female and male mice gained less weight during the treatment period and were smaller at weaning than water-treated mice ( P ≤ 0.05); no effect of sucrose treatment on body weight was observed at adulthood. However, adult sucrose-treated female mice had smaller tibias and lower serum insulin-like growth factor-1 than adult water-treated female mice ( P ≤ 0.05); these effects were not observed in males. Lower liver S-adenosylmethionine, phosphocholine, and glycerophosphocholine were observed in adult sucrose-treated compared with water-treated female and male mice ( P ≤ 0.05). Sucrose-treated female, but not male, mice had lower liver free choline and higher liver betaine compared with water-treated female mice ( P < 0.01). Our findings suggest that repeated neonatal sucrose treatment has long-term sex-specific effects on growth and liver methionine and choline metabolism.
- Published
- 2021
6. Isoflurane stress induces glucocorticoid production in mouse lymphoid organs
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Jordan E. Hamden, Kiran K. Soma, Melody Salehzadeh, Brandon J Forys, and Katherine M Gray
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Male ,Aging ,medicine.medical_specialty ,Lymphoid Tissue ,Endocrinology, Diabetes and Metabolism ,Spleen ,Random Allocation ,chemistry.chemical_compound ,Endocrinology ,Bone Marrow ,Stress, Physiological ,Corticosterone ,Immunity ,Internal medicine ,medicine ,Animals ,Secretion ,Progesterone ,Isoflurane ,business.industry ,Mice, Inbred C57BL ,medicine.anatomical_structure ,Lymphatic system ,chemistry ,Female ,Bone marrow ,business ,Glucocorticoid ,medicine.drug - Abstract
Glucocorticoids (GCs) are secreted by the adrenal glands and locally produced by lymphoid organs. Adrenal GC secretion at baseline and in response to stressors is greatly reduced during the stress hyporesponsive period (SHRP) in neonatal mice (postnatal day (PND) 2–12). It is unknown whether lymphoid GC production increases in response to stressors during the SHRP. Here, we administered an acute stressor (isoflurane anesthesia) to mice before, during, and after the SHRP and measured systemic and local GCs via mass spectrometry. We administered isoflurane, vehicle control (oxygen), or neither (baseline) at PND 1, 5, 9, or 13 and measured progesterone and six GCs in blood, bone marrow, thymus, and spleen. At PND1, blood and lymphoid GC levels were high and did not respond to stress. At PND5, blood GC levels were very low and increased slightly after stress, while lymphoid GC levels were also low but increased greatly after stress. At PND9, blood and lymphoid GC levels were similar at baseline and increased similarly after stress. At PND13, blood GC levels were higher than lymphoid GC levels at baseline, and blood GC levels showed a greater response to stress. These data demonstrate the remarkable plasticity of GC physiology during the postnatal period, show that local steroid levels do not reflect systemic steroid levels, provide insight into the SHRP, and identify a potential mechanism by which early-life stressors can alter immunity in adulthood.
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- 2021
7. Measurement of Steroids in the Placenta, Maternal Serum, and Fetal Serum in Humans, Rats, and Mice: A Technical Note
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Hayley R. Price, Cecilia Jalabert, Désirée R. Seib, Chunqi Ma, Dickson Lai, Kiran K. Soma, and Abby C. Collier
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Filtration and Separation ,Analytical Chemistry - Abstract
Steroid hormones are vital for a successful pregnancy. The placenta is attached to the uterine wall and is the major organ of communication between the mother and the fetus through the umbilical cord and the transfer of compounds (including the production and actions of steroids) across the villous placenta. Therefore, a correct understanding and measurement of steroid levels across the maternal–placental–fetal interface is essential. We have experience spanning more than two decades and have published more than 40 papers using a variety of methods to assess circulating and placental steroid levels. In this review, we discuss various methods for steroid detection and quantitation, as well as their advantages and disadvantages. This document provides technical guidance for best practices that, in our estimation, can assist researchers in more easily and correctly performing these studies. Critical methodological considerations, including tissue collection, tissue processing, and analytical factors (sensitivity, selectivity, matrix effects, and internal standards), are covered. We highlight important differences between human and rodent tissues as they relate to steroid levels in pregnancy and the interpretation of results, and provide guidance for best practices in future studies.
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- 2023
8. Steroid profiling of glucocorticoids in microdissected mouse brain across development
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Melody Salehzadeh, Brandon J Forys, George V Kachkovski, Chunqi Ma, Suzanne H. Austin, Katherine M Gray, Kiran K. Soma, and Jordan E. Hamden
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0301 basic medicine ,medicine.medical_specialty ,Neuroactive steroid ,medicine.medical_treatment ,Hippocampus ,Biology ,Steroid ,Mice ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,chemistry.chemical_compound ,0302 clinical medicine ,Developmental Neuroscience ,Tandem Mass Spectrometry ,Corticosterone ,Internal medicine ,medicine ,Animals ,Steroid 11-beta-hydroxylase ,Glucocorticoids ,Brain ,030104 developmental biology ,medicine.anatomical_structure ,Endocrinology ,chemistry ,Cerebral cortex ,Hypothalamus ,Steroids ,030217 neurology & neurosurgery ,Glucocorticoid ,Chromatography, Liquid ,medicine.drug - Abstract
Corticosterone is produced by the adrenal glands and also produced locally by other organs, such as the brain. Local levels of corticosterone in specific brain regions during development are not known. Here, we microdissected brain tissue and developed a novel liquid chromatography tandem mass spectrometry method (LC-MS/MS) to measure a panel of seven steroids (including 11-deoxycorticosterone (DOC), corticosterone, and 11-dehydrocorticosterone (DHC) in the blood, hippocampus (HPC), cerebral cortex (CC), and hypothalamus (HYP) of mice at postnatal day (PND) 5, 21, and 90. In a second cohort of mice, we measured the expression of three genes that code for steroidogenic enzymes that regulate corticosterone levels (Cyp11b1, Hsd11b1, and Hsd11b2) in the HPC, CC, and HYP. There were region-specific patterns of steroid levels across development, including higher corticosterone levels in the HPC and HYP than in the blood at PND5. In contrast, corticosterone levels were higher in the blood than in all brain regions at PND21 and PND90. Brain corticosterone levels were not positively correlated with blood corticosterone levels, and correlations across brain regions increased with age. Local corticosterone levels were best predicted by local DOC levels at PND5, but by local DHC levels at PND21 and PND90. Transcripts for the three enzymes were detectable in all samples (with highest expression of Hsd11b1) and showed region-specific changes with age. These data demonstrate that individual brain regions fine-tune local levels of corticosterone during early development and that coupling of glucocorticoid levels across regions increases with age.
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- 2021
9. ODP321 Impact of a Maternal High-Sucrose Diet in Rats on Fetal Physiology and the Placenta
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Desiree R Seib, George V Kachkovski, Griffin S Rutledge, Minseon M Jung, Hui W Chen, Tamara S Bodnar, Hayley R Price, Abby C Collier, and Kiran K Soma
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Endocrinology, Diabetes and Metabolism - Abstract
Consumption of sucrose (table sugar) is high in much of the world. The effects of maternal sucrose intake on the placenta and fetal brain remain unknown. In rats, maternal consumption of sucrose at a human-relevant level alters the mother's physiology and steroids, as well as the adult offspring's brain and behavior. Effects in mothers are impaired glucose tolerance, increased liver lipids, increased adipose inflammation, and decreased corticosterone levels in the blood but not in the brain. In contrast, in adult female offspring, maternal sucrose intake increases corticosterone levels in the blood and the brain. In adult male offspring, maternal sucrose intake increases preference for high-sucrose and high-fat diets as well as motivation for sugar rewards in a progressive ratio task. In this study, we investigate the underlying mechanisms of the observed behavioral and endocrine effects in the adult offspring. We examine anti-inflammatory steroids, steroidogenic enzymes and cytokines in the placenta, amniotic fluid, fetal blood and brain. In our model, we feed rat dams either a high-sucrose diet (26% of kCal) or an isocaloric, matched, control diet (1% sucrose) 10 weeks prior to and during gestation. At embryonic day 19 (E19), we collected maternal serum, placenta, amniotic fluid, fetal blood, and fetal brain. We used Palkovits punch to microdissect the placenta and fetal brain. Next, we used liquid chromatography-tandem mass spectrometry (LC-MS/MS), which is highly sensitive and specific, to measure multiple steroids (e. g. corticosterone, estrone, allopregnanolone). We examined multiple regions of the fetal brain (e. g. prefrontal cortex, nucleus accumbens, hypothalamus, hippocampus). We will also examine neuronal proliferation, microglia and tyrosine hydroxylase immunoreactivity in the fetal brain. Maternal high-sucrose diet increased 11-dehydrocorticosterone (inactive metabolite of corticosterone) and aldosterone in maternal serum and amniotic fluid. Testosterone and androstenedione were significantly higher in the amniotic fluid of male fetuses than female fetuses. Placental steroidogenic enzymes 3β-HSD and CYP19 were not affected by maternal diet or fetal sex; however, 3β-HSD activity was higher in the decidua than in the fetal part of the placenta. Steroid and cytokine data from the placenta, fetal blood and fetal brain are currently being analyzed. Ongoing analyses examine how a maternal high-sucrose diet affects brain development possibly by increasing inflammation. Presentation: No date and time listed
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- 2022
10. Editorial: Recent Progress and Perspectives in Neurosteroid Research
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Hubert Vaudry, Takayoshi Ubuka, Kiran K. Soma, and Kazuyoshi Tsutsui
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Endocrinology, Diabetes and Metabolism ,Pregnanolone ,Receptors, GABA-A ,Neurosteroids - Published
- 2022
11. Steroid profiling in brain and plasma of adult zebra finches following traumatic brain injury
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Sofia L. Gray, Kiran K. Soma, and Kelli A. Duncan
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Male ,Estradiol ,Endocrine and Autonomic Systems ,Endocrinology, Diabetes and Metabolism ,Brain ,Estrogens ,Cellular and Molecular Neuroscience ,Endocrinology ,Tandem Mass Spectrometry ,Brain Injuries, Traumatic ,Androgens ,Animals ,Female ,Steroids ,Finches ,Neurosteroids ,Progesterone ,Chromatography, Liquid - Abstract
Traumatic brain injury (TBI) is a serious health concern and a leading cause of death. Emerging evidence strongly suggests that steroid hormones (estrogens, androgens, and progesterone) modulate TBI outcomes by regulating inflammation, oxidative stress, free radical production, and extracellular calcium levels. Despite this growing body of evidence on steroid-mediated neuroprotection, very little is known about the local synthesis of these steroids following injury. Here, we examine the effect of TBI on local neurosteroid levels around the site of injury and in plasma in adult male and female zebra finches. Using ultrasensitive liquid chromatography-tandem mass spectrometry (LC-MS/MS), we examined estrogens, androgens, and progesterone in the entopallium and plasma of injured and uninjured animals. Three days after injury, elevated levels of 17β-estradiol (E
- Published
- 2022
12. Anti-Diarrheal Activity of Ethanolic Extract of Stylosanthes fruticosa Leaves in Mice.
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S., Gayathri, K., Jayanth Reddy, Y., Samuel, C., Vyshnavi, D., Savithri, H., Pavithra, K., Nikhitha, and K., Soma Sekhar Reddy
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- 2023
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13. Clinical Profile, Yield of Cartridge-based Nucleic Acid Amplification Test (GeneXpert), and Outcome in Children with Tubercular Meningitis
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Ramesh Konanki, Amit K Gaur, Santosh K Soma, Subodh Raju, Smilu Mohanlal, Lokesh Lingappa, and Ashwini Mohan
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Pediatrics ,medicine.medical_specialty ,tubercular meningitis ,GeneXpert ,Ommaya reservoir ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,medicine ,ventriculoperitoneal shunt ,Papilledema ,GeneXpert MTB/RIF ,medicine.diagnostic_test ,business.industry ,General Neuroscience ,Glasgow Coma Scale ,Mantoux test ,medicine.disease ,Hydrocephalus ,Pediatrics, Perinatology and Child Health ,Vomiting ,Original Article ,medicine.symptom ,business ,hydrocephalus ,Meningitis ,030217 neurology & neurosurgery - Abstract
Background: GeneXpert MTB/RIF is a test for early, rapid diagnosis of tubercular meningitis (TBM). Aim: The aim of this article was to study the clinical profile, radiological features, yield of GeneXpert, neurosurgical interventions, and outcome of TBM in children. Settings and Design: This was a retrospective and prospective observational study. Materials and Methods: Diagnosis was based on the uniform research definition criteria and was staged according to the British Medical Research Council. Mantoux test, analysis of cerebrospinal fluid (CSF), CSF GeneXpert, and radiological investigations were performed. Results: Of 36 patients, 50% were aged 1–5 years. Fever (100%), headache (82%), altered sensorium (80%), and vomiting (66%) were common features. Twelve (33%) had contact with active case of tuberculosis; 32 received Bacille Calmette Guarin vaccination. Neurological features included severe deterioration in sensorium (Glasgow Coma Scale < 8) (38%), mild and moderate deficit in sensorium (31%), hemiparesis (41%), and involvement of sixth (25%) and seventh (22%) cranial nerves. Cerebral vision impairment (25%), papilledema (25%), and dystonia (22%) were other findings. CSF GeneXpert was positive in 37% (12/33) patients. Hydrocephalus and basal exudates (75%) were noted on neuro-imaging. Surgical intervention was performed in children with hydrocephalus (13/27). Omayya reservoir was placed in seven children, of which five needed conversion to ventriculoperitoneal (VP) shunt; direct VP shunt was carried out in six (6/13). Good outcome was noted in 78% at discharge. Stage III TBM (P = 0.0001), cerebral infarcts (P = 0.0006), and motor deficits (P = 0.03) were associated with poor outcome. Sequelae included learning difficulties with poor scholastic performance (31.5%). Conclusion: GeneXpert has high diagnostic specificity, but negative results do not rule out TBM. CSF GeneXpert provided quick results. Placement of Ommaya reservoir in TBM stage II and III with hydrocephalus was not successful. Hydrocephalus was managed conservatively with success (53%).
- Published
- 2020
14. Androgen synthesis inhibition increases behavioural flexibility and mPFC tyrosine hydroxylase in gonadectomized male rats
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Ryan J. Tomm, Désirée R. Seib, George V. Kachkovski, Helen R. Schweitzer, Daniel J. Tobiansky, Stan B. Floresco, and Kiran K. Soma
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Male ,Cellular and Molecular Neuroscience ,Endocrinology ,Tyrosine 3-Monooxygenase ,Endocrine and Autonomic Systems ,Endocrinology, Diabetes and Metabolism ,Androgens ,Animals ,Prefrontal Cortex ,Reversal Learning ,Testosterone ,Rats - Abstract
Behavioural flexibility is essential to adapt to a changing environment and depends on the medial prefrontal cortex (mPFC). Testosterone administration decreases behavioural flexibility. It is well known that testosterone is produced in the gonads, but testosterone is also produced in the brain, including the mPFC and other nodes of the mesocorticolimbic system. It is unclear how testosterone produced in the brain versus the gonads influences behavioural flexibility. Here, in adult male rats, we assessed the effects of the androgen synthesis inhibitor abiraterone acetate (ABI) and long-term gonadectomy (GDX) on behavioural flexibility in two paradigms. In Experiment 1, ABI but not GDX reduced the number of errors to criterion and perseverative errors in a strategy set-shifting task. In Experiment 2, with a separate cohort of rats, ABI but not GDX reduced perseverative errors in a reversal learning task. In Experiment 1, we also examined tyrosine hydroxylase immunoreactivity (TH-ir), and ABI but not GDX increased TH-ir in the mPFC. Our findings suggest that neurally-produced androgens modulate behavioural flexibility via modification of dopamine signalling in the mesocorticolimbic system. These results indicate that neurosteroids regulate executive functions and that ABI treatment for prostate cancer might affect cognition.
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- 2022
15. Quantum Transfer Learning for Diagnosis of Diabetic Retinopathy
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Sridevi S, Kanimozhi T, Sayantan Bhattacharjee, Durri Shahwar, and K. Soma Sekhar Reddy
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- 2022
16. Ultrasensitive Quantification of Multiple Estrogens in Songbird Blood and Microdissected Brain by LC-MS/MS
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Cecilia Jalabert, Maria A. Shock, Chunqi Ma, Taylor J. Bootsma, Megan Q. Liu, and Kiran K. Soma
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Male ,Songbirds ,Estradiol ,Tandem Mass Spectrometry ,General Neuroscience ,Animals ,Brain ,Estrogens ,General Medicine ,Chromatography, Liquid - Abstract
Neuroestrogens are synthesized within the brain and regulate social behavior, learning and memory, and cognition. In song sparrows,Melospiza melodia, 17β-estradiol (17β-E2) promotes aggressive behavior, including during the nonbreeding season when circulating steroid levels are low. Estrogens are challenging to measure because they are present at very low levels, and current techniques often lack the sensitivity required. Furthermore, current methods often focus on 17β-E2and disregard other estrogens. Here, we developed and validated a method to measure four estrogens [estrone (E1), 17β-E2, 17α-estradiol (17α-E2), estriol (E3)] simultaneously in microdissected songbird brain, with high specificity, sensitivity, accuracy, and precision. We used liquid chromatography tandem mass spectrometry (LC-MS/MS), and to improve sensitivity, we derivatized estrogens using 1,2-dimethylimidazole-5-sulfonyl-chloride (DMIS). The straightforward protocol improved sensitivity by 10-fold for some analytes. There is substantial regional variation in neuroestrogen levels in brain areas that regulate social behavior in male song sparrows. For example, the auditory area NCM, which has high aromatase levels, has the highest E1and 17β-E2levels. In contrast, estrogen levels in blood are very low. Estrogen levels in both brain and circulation are lower in the nonbreeding season than in the breeding season. This technique will be useful for estrogen measurement in songbirds and potentially other animal models.
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- 2022
17. Global Climate Change by Wetland Greenhouse Gas Fluxes
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Madhavi Konni, Vara Saritha, Pulavarthi Madhuri, K. Soma Sekhar, and Manoj Kumar Karnena
- Abstract
Wetlands (WLs) in the landscapes are important for the GHGs production, ingesting, and exchange with the atmosphere. In this chapter, the authors illustrated how the WLs influence climate change, even though it is typical for determining the climatic role of WLs in the broader perspective. The conclusions might be wary based on the radiative balance as the radiative forcing since the 1750s or climatic roles are continuously changing in the wetlands. Degradation of WLs leads to reducing their functioning, and GHG fluxes might change and alter the climatic roles of the WLs. The chapter demonstrated that WL disturbances might cause global warming for a longer duration even though the WLs are restored or managed by replacing them with the mitigation WLs. Thus, activities that cause disturbance in the WLs leading to carbon oxidation in the soils should be avoided. Regulating the climate is an ecosystem service in the WLs; during the planning of the WLs, protection, restoration, and creation, environmental management should be considered.
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- 2022
18. Differential Effects of Lipopolysaccharide on Cognition, Corticosterone and Cytokines in Socially-Housed vs Isolated Male Rats
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Brittney Russell, Kelly M. Hrelja, Wendy K. Adams, Fiona D. Zeeb, Matthew D. Taves, Sukhbir Kaur, Kiran K. Soma, and Catharine A. Winstanley
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Lipopolysaccharides ,Male ,History ,Polymers and Plastics ,Interleukin-6 ,Industrial and Manufacturing Engineering ,Rats ,Behavioral Neuroscience ,Cognition ,Animals ,Cytokines ,Humans ,Rats, Long-Evans ,Business and International Management ,Corticosterone - Abstract
Social isolation is an established risk factor for mental illness and impaired immune function. Evidence suggests that neuroinflammatory processes contribute to mental illness, possibly via cytokine-induced modulation of neural activity. We examined the effects of lipopolysaccharide (LPS) administration and social home cage environment on cognitive performance in the 5-Choice Serial Reaction Time Task (5CSRTT), and their effects on corticosterone and cytokines in serum and brain tissue. Male Long-Evans rats were reared in pairs or in isolation before training on the 5CSRTT. The effects of saline and LPS (150 µg/kg i.p.) administration on sickness behaviour and task performance were then assessed. LPS-induced sickness behaviour was augmented in socially-isolated rats, translating to increased omissions and slower response times in the 5CSRTT. Both social isolation and LPS administration reduced impulsive responding, while discriminative accuracy remained unaffected. With the exception of reduced impulsivity in isolated rats, these effects were not observed following a second administration of LPS, revealing behavioural tolerance to repeated LPS injections. In a separate cohort of animals, social isolation potentiated the ability of LPS to increase serum corticosterone and IL-6, which corresponded to increased IL-6 in the orbitofrontal and medial prefrontal cortices and the nucleus accumbens. Basal IL-4 levels in the nucleus accumbens were reduced in socially-isolated rats. These findings are consistent with the adaptive response of reduced motivational drive following immune challenge, and identify social isolation as an exacerbating factor. Enhanced IL-6 signalling may play a role in mediating the potentiated behavioural response to LPS administration in isolated animals.
- Published
- 2022
19. Dirichlet Distribution Based Trust Model for Malicious Node Detection in Wireless Sensor Network
- Author
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K. Soma Sundaram and V. Uma Rani
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symbols.namesake ,Computer science ,business.industry ,Node (networking) ,General Engineering ,symbols ,business ,Wireless sensor network ,Dirichlet distribution ,Computer network - Published
- 2019
20. Search for Majoron-emitting modes of Xe136 double beta decay with the complete EXO-200 dataset
- Author
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S. Al Kharusi, G. Anton, I. Badhrees, P. S. Barbeau, D. Beck, V. Belov, T. Bhatta, M. Breidenbach, T. Brunner, G. F. Cao, W. R. Cen, C. Chambers, B. Cleveland, M. Coon, A. Craycraft, T. Daniels, L. Darroch, S. J. Daugherty, J. Davis, S. Delaquis, A. Der Mesrobian-Kabakian, R. DeVoe, J. Dilling, A. Dolgolenko, M. J. Dolinski, J. Echevers, W. Fairbank, D. Fairbank, J. Farine, S. Feyzbakhsh, P. Fierlinger, D. Fudenberg, P. Gautam, R. Gornea, G. Gratta, C. Hall, E. V. Hansen, J. Hoessl, P. Hufschmidt, M. Hughes, A. Iverson, A. Jamil, C. Jessiman, M. J. Jewell, A. Johnson, A. Karelin, L. J. Kaufman, T. Koffas, R. Krücken, A. Kuchenkov, K. S. Kumar, Y. Lan, A. Larson, B. G. Lenardo, D. S. Leonard, G. S. Li, S. Li, Z. Li, C. Licciardi, Y. H. Lin, R. MacLellan, T. McElroy, T. Michel, B. Mong, D. C. Moore, K. Murray, O. Njoya, O. Nusair, A. Odian, I. Ostrovskiy, A. Perna, A. Piepke, A. Pocar, F. Retière, A. L. Robinson, P. C. Rowson, D. Ruddell, J. Runge, S. Schmidt, D. Sinclair, K. Skarpaas, A. K. Soma, V. Stekhanov, M. Tarka, S. Thibado, J. Todd, T. Tolba, T. I. Totev, R. Tsang, B. Veenstra, V. Veeraraghavan, P. Vogel, J.-L. Vuilleumier, M. Wagenpfeil, J. Watkins, M. Weber, L. J. Wen, U. Wichoski, G. Wrede, S. X. Wu, Q. Xia, D. R. Yahne, L. Yang, Y.-R. Yen, O. Ya. Zeldovich, and T. Ziegler
- Subjects
010308 nuclear & particles physics ,0103 physical sciences ,010306 general physics ,01 natural sciences - Published
- 2021
21. Quantum Transfer Learning for Diagnosis of Diabetic Retinopathy
- Author
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S, Sridevi, primary, T, Kanimozhi, additional, Bhattacharjee, Sayantan, additional, Shahwar, Durri, additional, and Sekhar Reddy, K. Soma, additional
- Published
- 2022
- Full Text
- View/download PDF
22. Psychological Impact of the COVID 19 Pandemic among College Students: A Web-Based Cross-Sectional Survey
- Author
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Pradeepkumar, Bhupalam, primary, Madhubala, E., primary, Venkat, N. Sai, primary, Kumar, Y. Kiran, primary, Goruntla, Narayana, primary, Haranath, C., primary, Reddy, K. Soma Sekhar, primary, Ahad, Abdul, primary, and Sudheer, A., primary
- Published
- 2022
- Full Text
- View/download PDF
23. Maternal sucrose consumption alters behaviour and steroids in adult rat offspring
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Kim L. Schmidt, Daniel J. Tobiansky, Stan B. Floresco, Reilly T. Enos, George V Kachkovski, Kiran K. Soma, and E. Angela Murphy
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medicine.medical_specialty ,Receptors, Steroid ,Sucrose ,Neuroactive steroid ,Offspring ,Endocrinology, Diabetes and Metabolism ,Adipose tissue ,Biology ,Nucleus accumbens ,Choice Behavior ,Receptors, Dopamine ,chemistry.chemical_compound ,Random Allocation ,Endocrinology ,Corticosterone ,Pregnancy ,Internal medicine ,medicine ,Weaning ,Animals ,RNA, Messenger ,Prenatal Nutritional Physiological Phenomena ,Behavior, Animal ,Brain ,medicine.disease ,Animal Feed ,Diet ,Rats ,chemistry ,Gene Expression Regulation ,Female ,Steroids ,Energy Metabolism ,Biomarkers - Abstract
Maternal diets can have dramatic effects on the physiology, metabolism, and behaviour of offspring that persist into adulthood. However, the effects of maternal sucrose consumption on offspring remain unclear. Here, female rats were fed either a sucrose diet with a human-relevant level of sucrose (25% of kcal) or a macronutrient-matched, isocaloric control diet before, during, and after pregnancy. After weaning, all offspring were fed a standard low-sucrose rodent chow. We measured indicators of metabolism (weight, adipose, glucose tolerance, and liver lipids) during development and adulthood (16–24 weeks). We also measured food preference and motivation for sugar rewards in adulthood. Finally, in brain regions regulating these behaviours, we measured steroids and transcripts for steroidogenic enzymes, steroid receptors, and dopamine receptors. In male offspring, maternal sucrose intake decreased body mass and visceral adipose tissue, increased preference for high-sucrose and high-fat diets, increased motivation for sugar rewards, and decreased mRNA levels of Cyp17a1 (an androgenic enzyme) in the nucleus accumbens. In female offspring, maternal sucrose intake increased basal corticosterone levels. These data demonstrate the enduring, diverse, and sex-specific effects of maternal sucrose consumption on offspring phenotype.
- Published
- 2021
24. Glucocorticoid production in the thymus and brain: Immunosteroids and neurosteroids
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Melody Salehzadeh and Kiran K. Soma
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0303 health sciences ,Articles from the Special Issue on Emerging PNI research: future leaders in focus ,Edited by Amanda Kentner, Lois Harden, Denis de Melo Soares and Christoph Rummel ,Neuroactive steroid ,Stress hyporesponsive period (SHRP) ,Neurosciences. Biological psychiatry. Neuropsychiatry ,Steroid profiling ,Biology ,Development ,Bioinformatics ,Cortisol ,03 medical and health sciences ,0302 clinical medicine ,Immune system ,Nephrology ,medicine ,Early-life stress (ELS) ,Corticosterone ,030217 neurology & neurosurgery ,Target organ ,Glucocorticoid ,030304 developmental biology ,medicine.drug ,RC321-571 - Abstract
Glucocorticoids (GCs) regulate a myriad of physiological systems, such as the immune and nervous systems. Systemic GC levels in blood are often measured as an indicator of local GC levels in target organs. However, several extra-adrenal organs can produce and metabolize GCs locally. More sensitive and specific methods for GC analysis (i.e., mass spectrometry) allow measurement of local GC levels in small tissue samples with low GC concentrations. Consequently, is it now apparent that systemic GC levels often do not reflect local GC levels. Here, we review the use of systemic GC measurements in clinical and research settings, discuss instances where systemic GC levels do not reflect local GC levels, and present evidence that local GC levels provide useful insights, with a focus on local GC production in the thymus (immunosteroids) and brain (neurosteroids). Lastly, we suggest key areas for further research, such as the roles of immunosteroids and neurosteroids in neonatal programming and the potential clinical relevance of local GC modulators.
- Published
- 2021
25. Adaptive Marine Predator Optimization Algorithm (AOMA)–Deep Supervised Learning Classification (DSLC)based IDS framework for MANET security
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M. Sahaya Sheela, A. Gnana Soundari, Aditya Mudigonda, C. Kalpana, K. Suresh, K. Somasundaram, and Yousef Farhaoui
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intrusion detection system (ids) ,security ,mobile ad-hoc network (manet) ,min-max normalization ,adaptive marine predator optimization algorithm (aoma) ,deep supervise learning classification (dslc) ,Telecommunication ,TK5101-6720 - Abstract
Due to the dynamic nature and node mobility, assuring the security of Mobile Ad-hoc Networks (MANET) is one of the difficult and challenging tasks today. In MANET, the Intrusion Detection System (IDS) is crucial because it aids in the identification and detection of malicious attacks that impair the network’s regular operation. Different machine learning and deep learning methodologies are used for this purpose in the conventional works to ensure increased security of MANET. However, it still has significant flaws, including increased algorithmic complexity, lower system performance, and a higher rate of misclassification. Therefore, the goal of this paper is to create an intelligent IDS framework for significantly enhancing MANET security through the use of deep learning models. Here, the min-max normalization model is applied to preprocess the given cyber-attack datasets for normalizing the attributes or fields, which increases the overall intrusion detection performance of classifier. Then, a novel Adaptive Marine Predator Optimization Algorithm (AOMA) is implemented to choose the optimal features for improving the speed and intrusion detection performance of classifier. Moreover, the Deep Supervise Learning Classification (DSLC) mechanism is utilized to predict and categorize the type of intrusion based on proper learning and training operations. During evaluation, the performance and results of the proposed AOMA-DSLC based IDS methodology is validated and compared using various performance measures and benchmarking datasets.
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- 2024
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- View/download PDF
26. Androgen synthesis inhibition but not gonadectomy reduces persistence during strategy set-shifting and reversal learning in male rats
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Stan B. Floresco, George V Kachkovski, Helen R. Schweitzer, Desiree R Seib, Ryan J. Tomm, Kiran K. Soma, and Daniel J. Tobiansky
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Neuroactive steroid ,Tyrosine hydroxylase ,business.industry ,Abiraterone acetate ,Cognitive flexibility ,Flexibility (personality) ,chemistry.chemical_compound ,chemistry ,Dopamine ,Medicine ,Prefrontal cortex ,business ,Neuroscience ,Testosterone ,medicine.drug - Abstract
Androgens regulate behavioural flexibility, which is essential to adapt to a changing environment and depends on the medial prefrontal cortex (mPFC). Testosterone (T) administration decreases behavioural flexibility. It is well known that T is produced in the gonads, but T is also produced in the mesocorticolimbic system, which modulates behavioural flexibility. It is unclear how T produced in the brain versus the gonads influences behavioural flexibility. Here, we assess the effects of the androgen synthesis inhibitor abiraterone acetate (ABI) and long-term gonadectomy (GDX) on behavioural flexibility in two paradigms. In Experiment 1, ABI independent of GDX reduced the number of trials to criterion and perseverative errors in a strategy set-shifting task. Similarly, in Experiment 2, ABI but not GDX reduced perseverative errors in a reversal learning task. In subjects from Experiment 1, we also examined tyrosine hydroxylase immunoreactivity (TH-ir), and ABI but not GDX increased TH-ir in the mPFC. Our findings suggest that neurally-produced androgens modulate behavioural flexibility via modification of dopamine signalling in the mesocorticolimbic system. These results suggest novel roles for neurosteroids and possible side effects of ABI treatment for prostate cancer.
- Published
- 2021
27. Neuroendocrine Mechanisms Underlying Non-breeding Aggression: Common Strategies Between Birds and Fish
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Laura Quintana, Cecilia Jalabert, H. Bobby Fokidis, Kiran K. Soma, and Lucia Zubizarreta
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0301 basic medicine ,aromatase ,Neuroactive steroid ,food intake ,Receptor expression ,Mini Review ,Cognitive Neuroscience ,Neuroscience (miscellaneous) ,Context (language use) ,Neurosciences. Biological psychiatry. Neuropsychiatry ,Neuro Circuits ,electric fish ,Birds ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,0302 clinical medicine ,Neuroendocrine Cells ,Orexigenic ,territoriality ,estradiol ,mental disorders ,medicine ,Animals ,biology ,Aggression ,Fishes ,biology.organism_classification ,songbird ,humanities ,Sensory Systems ,Songbird ,Preoptic area ,030104 developmental biology ,Sex steroid ,testosterone ,Seasons ,medicine.symptom ,neurosteroids ,Neuroscience ,030217 neurology & neurosurgery ,medicine.drug ,RC321-571 - Abstract
Aggression is an adaptive behavior that plays an important role in gaining access to limited resources. Aggression may occur uncoupled from reproduction, thus offering a valuable context to further understand its neural and hormonal regulation. This review focuses on the contributions from song sparrows (Melospiza melodia) and the weakly electric banded knifefish (Gymnotus omarorum). Together, these models offer clues about the underlying mechanisms of non-breeding aggression, especially the potential roles of neuropeptide Y (NPY) and brain-derived estrogens. The orexigenic NPY is well-conserved between birds and teleost fish, increases in response to low food intake, and influences sex steroid synthesis. In non-breeding M. melodia, NPY increases in the social behavior network, and NPY-Y1 receptor expression is upregulated in response to a territorial challenge. In G. omarorum, NPY is upregulated in the preoptic area of dominant, but not subordinate, individuals. We hypothesize that NPY may signal a seasonal decrease in food availability and promote non-breeding aggression. In both animal models, non-breeding aggression is estrogen-dependent but gonad-independent. In non-breeding M. melodia, neurosteroid synthesis rapidly increases in response to a territorial challenge. In G. omarorum, brain aromatase is upregulated in dominant but not subordinate fish. In both species, the dramatic decrease in food availability in the non-breeding season may promote non-breeding aggression, via changes in NPY and/or neurosteroid signaling.
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- 2021
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28. A Variant Group Assignment Three Dimensional Model Using Pattern Recognition Technique
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E. Manjoolatha, V. K. Soma Sekhar Srinivas, G. Rajeswari, R. Vijayalakshmi, and M. Sundaramurthy
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Group (mathematics) ,business.industry ,Pattern recognition (psychology) ,Pattern recognition ,Artificial intelligence ,business ,Three dimensional model ,Mathematics - Published
- 2019
29. Preparing to migrate: expression of androgen signaling molecules and insulin-like growth factor-1 in skeletal muscles of Gambel’s white-crowned sparrows
- Author
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Chunqi Ma, Devaleena S. Pradhan, Marilyn Ramenofsky, Kiran K. Soma, and Barney A. Schlinger
- Subjects
Male ,medicine.medical_specialty ,Cell signaling ,Anabolism ,Physiology ,medicine.drug_class ,030310 physiology ,medicine.medical_treatment ,Biology ,Pectoralis Muscles ,Muscle hypertrophy ,Avian Proteins ,03 medical and health sciences ,Behavioral Neuroscience ,Insulin-like growth factor ,0302 clinical medicine ,3-Oxo-5-alpha-Steroid 4-Dehydrogenase ,Internal medicine ,medicine ,Animals ,Testosterone ,Insulin-Like Growth Factor I ,Pectoralis Muscle ,Ecology, Evolution, Behavior and Systematics ,0303 health sciences ,Androgen ,Adaptation, Physiological ,Androgen receptor ,Endocrinology ,Gene Expression Regulation ,Receptors, Androgen ,Flight, Animal ,Animal Migration ,Animal Science and Zoology ,Seasons ,Sparrows ,030217 neurology & neurosurgery ,Signal Transduction - Abstract
Migratory birds, including Gambel's white-crowned sparrows (Zonotrichia leucophrys gambelii), exhibit profound modifications of skeletal muscles prior to migration, notably hypertrophy of the pectoralis muscle required for powered flight. Muscle growth may be influenced by anabolic effects of androgens; however, prior to spring departure, circulating androgens are low in sparrows. A seasonal increase in local androgen signaling may occur within muscle to promote remodeling. We measured morphological parameters, plasma and tissue levels of testosterone, as well as mRNA expression levels of androgen receptor, 5α-reductase (converts testosterone to 5α-dihydrotestosterone), and the androgen-dependent myotrophic factor insulin-like growth factor-1. We studied the pectoralis muscle as well as the gastrocnemius (leg) muscle of male sparrows across three stages on the wintering grounds: winter (February), pre-nuptial molt (March), and pre-departure (April). Testosterone levels were low, but detectable, in plasma and muscles at all three stages. Androgen receptor mRNA and 5α-reductase Type 1 mRNA increased at pre-departure, but did so in both muscles. Notably, mRNA levels of insulin-like growth factor-1, an androgen-dependent gene critical for muscle remodeling, increased at pre-departure in the pectoralis but decreased in the gastrocnemius. Taken together, these data suggest a site-specific molecular basis for muscle remodeling that may serve to enable long-distance flight.
- Published
- 2018
30. The nylon balloon for xenon loaded liquid scintillator in KamLAND-Zen 800 neutrinoless double-beta decay search experiment
- Author
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G. L. Pease, H. Ozaki, T. O'Donnell, S. Ishikawa, B. E. Berger, C. Grant, Y. Shibukawa, K. Nakamura, S. Abe, Y. Karino, T. Hachiya, Kunio Inoue, J. G. Learned, J. A. Detwiler, S. Umehara, J. Shirai, Hugon J Karwowski, Y. Wada, A. Herman, B. K. Fujikawa, H. Ikeda, Y. Takemoto, Y. Kamei, Yu. Efremenko, T. Takai, A. A. Suzuki, Y. Shirahata, S. Hayashida, Sanshiro Enomoto, M. Koga, Y. Teraoka, Y. Honda, K. Ueshima, S. Obara, Y. Gando, K. Hata, A. Li, Toyohiko Kinoshita, Hiroko Watanabe, K. Soma, K. Hosokawa, J. Maricic, A. Suzuki, A. Hayashi, D. M. Markoff, D. Chernyak, T. Mitsui, K. Tamae, N. Ota, Hideto Miyake, Akira Ono, A. Kozlov, S. Fraker, A. Gando, K. Nemoto, Ken-Ichi Fushimi, S. Hirata, N. Kawada, S. Dell'Oro, E. Krupczak, Koji Ishidoshiro, S. Ieki, K. Kamizawa, I. Shimizu, S. Matsuda, A. Takeuchi, S. Otsuka, Lindley Winslow, S. Yoshida, T. Nakada, M. P. Decowski, Werner Tornow, and XENON (IHEF, IoP, FNWI)
- Subjects
Physics - Instrumentation and Detectors ,Physics::Instrumentation and Detectors ,Solar neutrino ,FOS: Physical sciences ,chemistry.chemical_element ,Scintillator ,nucl-ex ,7. Clean energy ,01 natural sciences ,Physics::Geophysics ,High Energy Physics - Experiment ,Nuclear physics ,High Energy Physics - Experiment (hep-ex) ,Xenon ,Double beta decay ,0103 physical sciences ,Nuclear Experiment (nucl-ex) ,010306 general physics ,physics.ins-det ,Instrumentation ,Nuclear Experiment ,Mathematical Physics ,Physics ,hep-ex ,010308 nuclear & particles physics ,Instrumentation and Detectors (physics.ins-det) ,chemistry ,Physics::Accelerator Physics ,High Energy Physics::Experiment - Abstract
The KamLAND-Zen 800 experiment is searching for the neutrinoless double-beta decay of $^{136}$Xe by using $^{136}$Xe-loaded liquid scintillator. The liquid scintillator is enclosed inside a balloon made of thin, transparent, low-radioactivity film that we call Inner Balloon (IB). The IB, apart from guaranteeing the liquid containment, also allows to minimize the background from cosmogenic muon-spallation products and $^{8}$B solar neutrinos. Indeed these events could contribute to the total counts in the region of interest around the Q-value of the double-beta decay of $^{136}$Xe. In this paper, we present an overview of the IB and describe the various steps of its commissioning minimizing the radioactive contaminations, from the material selection, to the fabrication of the balloon and its installation inside the KamLAND detector. Finally, we show the impact of the IB on the KamLAND background as measured by the KamLAND detector itself., 23 pages, 16 figures, to be submitted to JINST
- Published
- 2021
31. SteroidXtract: Deep Learning-Based Pattern Recognition Enables Comprehensive and Rapid Extraction of Steroid-Like Metabolic Features for Automated Biology-Driven Metabolomics
- Author
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Yibo Jiao, Melody Salehzadeh, Tao Huan, Kiran K. Soma, and Shipei Xing
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business.industry ,Deep learning ,010401 analytical chemistry ,Robustness (evolution) ,Computational Biology ,Computational biology ,Overfitting ,Biology ,010402 general chemistry ,01 natural sciences ,Convolutional neural network ,Thresholding ,0104 chemical sciences ,Analytical Chemistry ,Random forest ,Metabolomics ,Deep Learning ,Tandem Mass Spectrometry ,Pattern recognition (psychology) ,Steroids ,Artificial intelligence ,business - Abstract
Despite the vast amount of metabolic information that can be captured in untargeted metabolomics, many biological applications are looking for a biology-driven metabolomics platform that targets a set of metabolites that are relevant to the given biological question. Steroids are a class of important molecules that play critical roles in many physiological systems and diseases. Besides known steroids, there are a large number of unknown steroids that have not been reported in the literature. The ability to rapidly detect and quantify both known and unknown steroid molecules in a biological sample can greatly accelerate a broad range of steroid-focused life science research. This work describes the development and application of SteroidXtract, a convolutional neural network (CNN)-based bioinformatics tool that can recognize steroid molecules in mass spectrometry (MS)-based untargeted metabolomics using their unique tandem MS (MS2) spectral patterns. SteroidXtract was trained using a comprehensive set of standard MS2 spectra from MassBank of North America (MoNA) and an in-house steroid library. Data augmentation strategies, including intensity thresholding and Gaussian noise addition, were created and applied to minimize data overfitting caused by the limited number of standard steroid MS2 spectra. The CNN model embedded in SteroidXtract was further compared with random forest and XGBoost using nested cross-validations to demonstrate its performance. Finally, SteroidXtract was applied in several metabolomics studies to demonstrate its sensitivity, specificity, and robustness. Compared to conventional statistics-driven metabolomics data interpretation, our work offers a novel automated biology-driven approach to interpreting untargeted metabolomics data, prioritizing biologically important molecules with high throughput and sensitivity.
- Published
- 2021
32. An analysis of causative factors for road accidents using partition around medoids and hierarchical clustering techniques
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Pendyala Manasa, Pragya Ananth, Priyadarshini Natarajan, K. Somasundaram, E. R. Rajkumar, Kattur Soundarapandian Ravichandran, Venkatesh Balasubramanian, and Amir H. Gandomi
- Subjects
accidents ,Calinski–Harabasz index ,Davies–Bouldin index ,DBSCAN ,hierarchal clustering ,K‐means ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Electronic computers. Computer science ,QA75.5-76.95 - Abstract
Abstract Insufficient progress in the development of national highways and state highways, coupled with a lack of public awareness regarding road safety, has resulted in prevalent traffic congestion and a high rate of accidents. Understanding the dominant and contributing factors that may influence road traffic accident severity is essential. This study identified the primary causes and the most significant target‐specific causative factors for road accident severity. A modified partitioning around medoids model determined the dominant road accident features. These clustering algorithms will extract hidden information from the road accident data and generate new features for our implementation. Then, the proposed method is compared with the other state‐of‐the‐art clustering techniques with three performance metrics: the silhouette coefficient, the Davies–Bouldin index, and the Calinski–Harabasz index. This article's main contribution is analyzing six different scenarios (different angles of the problem) concerning grievous and non‐injury accidents. This analysis provides deeper insights into the problem and can assist transport authorities in Tamil Nadu, India, in deriving new rules for road traffic. The output of different scenarios is compared with hierarchical clustering, and the overall clustering of the proposed method is compared with other clustering algorithms. Finally, it is proven that the proposed method outperforms other recently developed techniques.
- Published
- 2024
- Full Text
- View/download PDF
33. NEXO: Neutrinoless double beta decay search beyond $10^{28}$ year half-life sensitivity
- Author
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G Adhikari, S Al Kharusi, E Angelico, G Anton, I J Arnquist, I Badhrees, J Bane, V Belov, E P Bernard, T Bhatta, A Bolotnikov, P A Breur, J P Brodsky, E Brown, T Brunner, E Caden, G F Cao, L Cao, C Chambers, B Chana, S A Charlebois, D Chernyak, M Chiu, B Cleveland, R Collister, S A Czyz, J Dalmasson, T Daniels, L Darroch, R DeVoe, M L Di Vacri, J Dilling, Y Y Ding, A Dolgolenko, M J Dolinski, A Dragone, J Echevers, M Elbeltagi, L Fabris, D Fairbank, W Fairbank, J Farine, S Ferrara, S Feyzbakhsh, Y S Fu, G Gallina, P Gautam, G Giacomini, W Gillis, C Gingras, D Goeldi, R Gornea, G Gratta, C A Hardy, K Harouaka, M Heffner, E W Hoppe, A House, A Iverson, A Jamil, M Jewell, X S Jiang, A Karelin, L J Kaufman, I Kotov, R Krücken, A Kuchenkov, K S Kumar, Y Lan, A Larson, K G Leach, B G Lenardo, D S Leonard, G Li, S Li, Z Li, C Licciardi, R Lindsay, R MacLellan, M Mahtab, P Martel-Dion, J Masbou, N Massacret, T McElroy, K McMichael, M Medina Peregrina, T Michel, B Mong, D C Moore, K Murray, J Nattress, C R Natzke, R J Newby, K Ni, F Nolet, O Nusair, J C Nzobadila Ondze, K Odgers, A Odian, J L Orrell, G S Ortega, C T Overman, S Parent, A Perna, A Piepke, A Pocar, J-F Pratte, N Priel, V Radeka, E Raguzin, G J Ramonnye, T Rao, H Rasiwala, S Rescia, F Retière, J Ringuette, V Riot, T Rossignol, P C Rowson, N Roy, R Saldanha, S Sangiorgio, X Shang, A K Soma, F Spadoni, V Stekhanov, X L Sun, M Tarka, S Thibado, A Tidball, J Todd, T Totev, S Triambak, R H M Tsang, T Tsang, F Vachon, V Veeraraghavan, S Viel, C Vivo-Vilches, P Vogel, J-L Vuilleumier, M Wagenpfeil, T Wager, M Walent, K Wamba, Q Wang, W Wei, L J Wen, U Wichoski, S Wilde, M Worcester, S X Wu, W H Wu, X Wu, Q Xia, W Yan, H Yang, L Yang, O Zeldovich, J Zhao, T Ziegler, Laboratoire de physique subatomique et des technologies associées (SUBATECH), Université de Nantes - UFR des Sciences et des Techniques (UN UFR ST), Université de Nantes (UN)-Université de Nantes (UN)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Physique Nucléaire et de Physique des Particules du CNRS (IN2P3)-IMT Atlantique Bretagne-Pays de la Loire (IMT Atlantique), Institut Mines-Télécom [Paris] (IMT)-Institut Mines-Télécom [Paris] (IMT), and nEXO
- Subjects
Nuclear and High Energy Physics ,background: effect ,Physics - Instrumentation and Detectors ,FOS: Physical sciences ,[PHYS.NEXP]Physics [physics]/Nuclear Experiment [nucl-ex] ,time-projection chambers ,01 natural sciences ,neutrinoless double beta decay ,Monte Carlo simulations ,double-beta decay: (0neutrino) ,0103 physical sciences ,neutrino: mass ,[PHYS.PHYS.PHYS-INS-DET]Physics [physics]/Physics [physics]/Instrumentation and Detectors [physics.ins-det] ,Nuclear Experiment (nucl-ex) ,010306 general physics ,Nuclear Experiment ,detector: design ,xenon: liquid ,010308 nuclear & particles physics ,neutrinos ,Instrumentation and Detectors (physics.ins-det) ,sensitivity ,time projection chamber ,3. Good health ,photon: scintillation counter ,copper ,radioactivity ,Xe-136 ,experimental results - Abstract
The nEXO neutrinoless double beta decay experiment is designed to use a time projection chamber and 5000 kg of isotopically enriched liquid xenon to search for the decay in $^{136}$Xe. Progress in the detector design, paired with higher fidelity in its simulation and an advanced data analysis, based on the one used for the final results of EXO-200, produce a sensitivity prediction that exceeds the half-life of $10^{28}$ years. Specifically, improvements have been made in the understanding of production of scintillation photons and charge as well as of their transport and reconstruction in the detector. The more detailed knowledge of the detector construction has been paired with more assays for trace radioactivity in different materials. In particular, the use of custom electroformed copper is now incorporated in the design, leading to a substantial reduction in backgrounds from the intrinsic radioactivity of detector materials. Furthermore, a number of assumptions from previous sensitivity projections have gained further support from interim work validating the nEXO experiment concept. Together these improvements and updates suggest that the nEXO experiment will reach a half-life sensitivity of $1.35\times 10^{28}$ yr at 90% confidence level in 10 years of data taking, covering the parameter space associated with the inverted neutrino mass ordering, along with a significant portion of the parameter space for the normal ordering scenario, for almost all nuclear matrix elements. The effects of backgrounds deviating from the nominal values used for the projections are also illustrated, concluding that the nEXO design is robust against a number of imperfections of the model., Comment: 26 pages, 19 figures, version accepted by Journal of Phys. G
- Published
- 2021
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34. An Experimental Investigation of Tube-in-Tube Type Heat Exchanger to Enhance Heat Transfer Using Titanium Oxide TiO2-Water Nanofluid
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B. Kamala Priya, P. Vijay Kumar, and K. Soma Sekhar
- Subjects
symbols.namesake ,Nanofluid ,Materials science ,Mass flow ,Heat transfer ,Heat exchanger ,symbols ,Tube (fluid conveyance) ,Heat transfer coefficient ,Péclet number ,Composite material ,Nusselt number - Abstract
This paper presents the results of the enhancement of heat transfer performance and parametric study of the tube in a tube heat exchanger using TiO2-water nanofluid. Initially, a tube in tube heat exchanger experimental set up is fabricated with hot water flows in the outer tube and distilled water flows in the inner tube. Experiments have been conducted to estimate the heat transfer parameters such as Nusselt number, heat transfer coefficient, and Peclet number for different mass flow rates of heat transfer fluids. Later, distilled water is replaced with TiO2-water nanofluid, which flows in the inner tube; hot water flows in the outer tube. Experiments were conducted for different volume concentrations of TiO2–water nanofluid, and the variations in heat transfer parameters such as Nusselt number, heat transfer coefficient, and Peclet number were observed and analyzed. Finally, the performance of TiO2/water nanofluid was compared with distilled water and observed that the TiO2/water nanofluid causes the enhancement of the heat transfer coefficient, Nusselt number of the tube in a tube heat exchanger.
- Published
- 2021
35. Profiling of systemic and brain steroids in male songbirds: Seasonal changes in neurosteroids
- Author
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Cecilia Jalabert, Kiran K. Soma, and Chunqi Ma
- Subjects
Male ,medicine.medical_specialty ,Neuroactive steroid ,Estrone ,medicine.drug_class ,Endocrinology, Diabetes and Metabolism ,Dehydroepiandrosterone ,030209 endocrinology & metabolism ,Sexual Behavior, Animal ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,chemistry.chemical_compound ,0302 clinical medicine ,Endocrinology ,Tandem Mass Spectrometry ,Corticosterone ,Internal medicine ,medicine ,Seasonal breeder ,Animals ,Androstenedione ,Aromatase ,Progesterone ,Whole blood ,Estradiol ,biology ,Endocrine and Autonomic Systems ,Brain ,Androgen ,chemistry ,biology.protein ,Sparrows ,030217 neurology & neurosurgery ,Chromatography, Liquid - Abstract
Steroids are secreted by the gonads and adrenal glands into the blood to modulate neurophysiology and behaviour. In addition, the brain can metabolise circulating steroids and synthesise steroids de novo. Songbirds show high levels of neurosteroid synthesis. In the present study, we developed and validated a liquid chromatography-tandem mass spectrometry (LC-MS/MS) assay for the measurement of 10 steroids in whole blood, plasma and microdissected brain tissue (1-2 mg) of song sparrows. Our assay is highly accurate, precise, specific and sensitive. Moreover, the liquid-liquid extraction is fast, simple and effective. We quantified steroids in the blood and brain of wild male song sparrows in both breeding and non-breeding seasons. As expected, systemic androgen levels were higher in the breeding season than in the non-breeding season. Brain androgens were detectable only in the breeding season; androstenedione and 5α-dihydrotestosterone levels were up to 20-fold higher in specific brain regions than in blood. Oestrogens were not detectable in blood in both seasons. Oestrone and 17β-oestradiol were detectable in brain in the breeding season only (up to 1.4 ng g-1 combined). Progesterone levels in several regions were higher in the non-breeding season than the breeding season, despite the lack of seasonal changes in systemic progesterone. Corticosterone levels in the blood were higher in the breeding season than in the non-breeding season but showed few seasonal differences in the brain. In general, the steroid levels presented here are lower than those in previous reports using immunoassays, because of the higher specificity of mass spectrometry. We conclude that (i) brain steroid levels can differ greatly from circulating steroid levels and (ii) brain steroid levels show region-specific seasonal patterns that are not a simple reflection of circulating steroid levels. This approach using ultrasensitive LC-MS/MS is broadly applicable to other species and allows steroid profiling in microdissected brain regions.
- Published
- 2020
36. Author response for 'Profiling of systemic and brain steroids in male songbirds:seasonal changes in neurosteroids'
- Author
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Chunqi Ma, Cecilia Jalabert, and Kiran K. Soma
- Subjects
Neuroactive steroid ,Profiling (information science) ,Biology ,Neuroscience - Published
- 2020
37. Finite Element Model for Transmission and Absorption of Occlusal Impact Force
- Author
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N. Haibara, T. Ishida, and K Soma
- Subjects
Materials science ,Transmission (telecommunications) ,Impact ,Absorption (electromagnetic radiation) ,Molecular physics ,Finite element method - Published
- 2020
38. Measurement of the Spectral Shape of the β-Decay of ^{137}Xe to the Ground State of ^{137}Cs in EXO-200 and Comparison with Theory
- Author
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S, Al Kharusi, G, Anton, I, Badhrees, P S, Barbeau, D, Beck, V, Belov, T, Bhatta, M, Breidenbach, T, Brunner, G F, Cao, W R, Cen, C, Chambers, B, Cleveland, M, Coon, A, Craycraft, T, Daniels, L, Darroch, S J, Daugherty, J, Davis, S, Delaquis, A, Der Mesrobian-Kabakian, R, DeVoe, J, Dilling, A, Dolgolenko, M J, Dolinski, J, Echevers, W, Fairbank, D, Fairbank, J, Farine, S, Feyzbakhsh, P, Fierlinger, D, Fudenberg, P, Gautam, R, Gornea, G, Gratta, C, Hall, E V, Hansen, J, Hoessl, P, Hufschmidt, M, Hughes, A, Iverson, A, Jamil, C, Jessiman, M J, Jewell, A, Johnson, A, Karelin, L J, Kaufman, T, Koffas, J, Kostensalo, R, Krücken, A, Kuchenkov, K S, Kumar, Y, Lan, A, Larson, B G, Lenardo, D S, Leonard, G S, Li, S, Li, Z, Li, C, Licciardi, Y H, Lin, R, MacLellan, T, McElroy, T, Michel, B, Mong, D C, Moore, K, Murray, P, Nakarmi, O, Njoya, O, Nusair, A, Odian, I, Ostrovskiy, A, Piepke, A, Pocar, F, Retière, A L, Robinson, P C, Rowson, D, Ruddell, J, Runge, S, Schmidt, D, Sinclair, K, Skarpaas, A K, Soma, V, Stekhanov, J, Suhonen, M, Tarka, S, Thibado, J, Todd, T, Tolba, T I, Totev, R, Tsang, B, Veenstra, V, Veeraraghavan, P, Vogel, J-L, Vuilleumier, M, Wagenpfeil, J, Watkins, M, Weber, L J, Wen, U, Wichoski, G, Wrede, S X, Wu, Q, Xia, D R, Yahne, L, Yang, Y-R, Yen, O Ya, Zeldovich, and T, Ziegler
- Abstract
We report on a comparison between the theoretically predicted and experimentally measured spectra of the first-forbidden nonunique β-decay transition ^{137}Xe(7/2^{-})→^{137}Cs(7/2^{+}). The experimental data were acquired by the EXO-200 experiment during a deployment of an AmBe neutron source. The ultralow background environment of EXO-200, together with dedicated source deployment and analysis procedures, allowed for collection of a pure sample of the decays, with an estimated signal to background ratio of more than 99 to 1 in the energy range from 1075 to 4175 keV. In addition to providing a rare and accurate measurement of the first-forbidden nonunique β-decay shape, this work constitutes a novel test of the calculated electron spectral shapes in the context of the reactor antineutrino anomaly and spectral bump.
- Published
- 2020
39. Sucrose consumption alters steroid and dopamine signalling in the female rat brain
- Author
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Kim L. Schmidt, Daniel J. Tobiansky, George V Kachkovski, Kiran K. Soma, E. Angela Murphy, and Reilly T. Enos
- Subjects
0301 basic medicine ,medicine.medical_specialty ,Neuroactive steroid ,Endocrinology, Diabetes and Metabolism ,Dopamine ,030209 endocrinology & metabolism ,Biology ,Nucleus accumbens ,03 medical and health sciences ,chemistry.chemical_compound ,Eating ,0302 clinical medicine ,Endocrinology ,Corticosterone ,Dietary Sucrose ,Pregnancy ,Internal medicine ,medicine ,Animals ,Glucose tolerance test ,Tyrosine hydroxylase ,medicine.diagnostic_test ,Brain ,Rats ,030104 developmental biology ,chemistry ,Hypothalamus ,Models, Animal ,Female ,FOSB ,medicine.drug ,Signal Transduction - Abstract
Sucrose consumption is associated with type 2 diabetes, cardiovascular disease, and cognitive deficits. Sucrose intake during pregnancy might have particularly prominent effects on metabolic, endocrine, and neural physiology. It remains unclear how consumption of sucrose affects parous females, especially in brain circuits that mediate food consumption and reward processing. Here, we examine whether a human-relevant level of sucrose before, during, and after pregnancy (17–18 weeks total) influences metabolic and neuroendocrine physiology in female rats. Females were fed either a control diet or a macronutrient-matched, isocaloric sucrose diet (25% of kcal from sucrose). Metabolically, sucrose impairs glucose tolerance, increases liver lipids, and increases a marker of adipose inflammation, but has no effect on body weight or overall visceral adiposity. Sucrose also decreases corticosterone levels in serum but not in the brain. Sucrose increases progesterone levels in serum and in the brain and increases the brain:serum ratio of progesterone in the mesocorticolimbic system and hypothalamus. These data suggest a dysregulation of systemic and local steroid signalling. Moreover, sucrose decreases tyrosine hydroxylase (TH), a catecholamine-synthetic enzyme, in the medial prefrontal cortex. Finally, sucrose consumption alters the expression pattern of FOSB, a marker of phasic dopamine signalling, in the nucleus accumbens. Overall, chronic consumption of sucrose at a human-relevant level alters metabolism, steroid levels, and brain dopamine signalling in a female rat model.
- Published
- 2020
40. Measurement of Steroid Fatty Acyl Esters in Blood and Brain
- Author
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Sofia L Gray, Kiran K. Soma, Cecilia Jalabert, and Chunqi Ma
- Subjects
Text mining ,Biochemistry ,business.industry ,Chemistry ,Endocrinology, Diabetes and Metabolism ,medicine.medical_treatment ,medicine ,Steroid Hormones, Nuclear Receptors, and Collaborators ,Steroid Hormones and Receptors ,business ,AcademicSubjects/MED00250 ,Steroid - Abstract
Steroid fatty acyl esters (FAEs) are a class of steroid conjugates that are abundant in circulation, have long half-lives, and are stored in lipid-rich tissues. Steroid-FAEs are present in many species, but their functions are poorly understood. They can be metabolized to active, unconjugated steroids and therefore may act as a reservoir of steroids. Dehydroepiandrosterone (DHEA) is an androgen precursor that can be conjugated to various fatty acids. DHEA also modulates aggression in several species, including songbirds, rodents and humans. Recent studies suggest that DHEA-FAEs might be present in songbird blood and/or brain, in part, to regulate aggression. Here, we (1) investigated the abundance of multiple fatty acids in songbird blood and (2) developed an indirect method to measure DHEA-FAEs in songbird blood and brain. First, preliminary work demonstrated high circulating levels of total (esterified and non-esterified) fatty acids, especially oleic, linoleic, and palmitic acids. These data, in conjunction with previous research, suggest that these fatty acids might be conjugated to steroids, including DHEA. Second, we successfully developed a saponification technique to indirectly measure DHEA-FAEs. Saponification cleaves the bond between the steroid molecule and the fatty acid, and we then measure the unconjugated steroid. DHEA-FAEs were incubated in 0.5M potassium hydroxide in ethanol for 30 min at room temperature, and steroids were subsequently extracted twice with dichloromethane. Unconjugated DHEA was quantified using liquid chromatography-tandem mass spectrometry (LC-MS/MS), the gold standard in steroid measurement. DHEA recovery was 88% using reference standards in neat solution. We validated this method with song sparrow plasma and chicken serum and obtained recoveries of 94-105% with intra-assay variation of 2.6%. Future research will directly measure specific DHEA-FAEs (e.g. DHEA-oleate) in blood and brain using LC-MS/MS. This research will elucidate the possible roles of steroid-FAEs in brain function and the regulation of steroid-dependent behavior. This work may also clarify the identities, levels and functions of steroid-FAEs in other species, including rodent models and humans. These data have implications for basic and clinical neuroendocrinology, offering insights into a possible storage system for steroids that may influence social behaviour.
- Published
- 2021
41. Total colorings of some classes of four regular circulant graphs
- Author
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R. Navaneeth, J. Geetha, K. Somasundaram, and Hung-Lin Fu
- Subjects
Total coloring ,circulant graphs ,05C15 (primary) ,05b15 (secondary) ,Mathematics ,QA1-939 - Abstract
AbstractThe total chromatic number, [Formula: see text] is the minimum number of colors which need to be assigned to obtain a total coloring of the graph G. The Total Coloring Conjecture (TCC) made independently by Behzad and Vizing that for any graph, [Formula: see text] where [Formula: see text] represents the maximum degree of G. In this paper we obtained the total chromatic number for some classes of four regular circulant graphs.
- Published
- 2024
- Full Text
- View/download PDF
42. Sex steroid profiles in zebra finches: Effects of reproductive state and domestication
- Author
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Ondi L. Crino, Mark C. Mainwaring, Kang Nian Yap, Katherine L. Buchanan, Kiran K. Soma, Nora H. Prior, Emma S. Tomlinson Guns, Simon C. Griffith, Hans Adomat, and Chunqi Ma
- Subjects
Male ,0106 biological sciences ,0301 basic medicine ,medicine.medical_specialty ,animal structures ,Zoology ,Dehydroepiandrosterone ,Biology ,010603 evolutionary biology ,01 natural sciences ,Domestication ,03 medical and health sciences ,chemistry.chemical_compound ,Endocrinology ,Internal medicine ,medicine ,Animals ,Androstenedione ,Gonadal Steroid Hormones ,Zebra finch ,reproductive and urinary physiology ,Testosterone ,Androsterone ,Reproduction ,biology.organism_classification ,Songbird ,030104 developmental biology ,nervous system ,chemistry ,Sex steroid ,behavior and behavior mechanisms ,Pregnenolone ,Female ,Animal Science and Zoology ,Finches ,medicine.drug - Abstract
The zebra finch is a common model organism in neuroscience, endocrinology, and ethology. Zebra finches are generally considered opportunistic breeders, but the extent of their opportunism depends on the predictability of their habitat. This plasticity in the timing of breeding raises the question of how domestication, a process that increases environmental predictability, has affected their reproductive physiology. Here, we compared circulating steroid levels in various "strains" of zebra finches. In Study 1, using radioimmunoassay, we examined circulating testosterone levels in several strains of zebra finches (males and females). Subjects were wild or captive (Captive Wild-Caught, Wild-Derived, or Domesticated). In Study 2, using liquid chromatography-tandem mass spectrometry (LC-MS/MS), we examined circulating sex steroid profiles in wild and domesticated zebra finches (males and females). In Study 1, circulating testosterone levels in males differed across strains. In Study 2, six steroids were detectable in plasma from wild zebra finches (pregnenolone, progesterone, dehydroepiandrosterone (DHEA), testosterone, androsterone, and 5α-dihydrotestosterone (5α-DHT)). Only pregnenolone and progesterone levels changed across reproductive states in wild finches. Compared to wild zebra finches, domesticated zebra finches had elevated levels of circulating pregnenolone, progesterone, DHEA, testosterone, androstenedione, and androsterone. These data suggest that domestication has profoundly altered the endocrinology of this common model organism. These results have implications for interpreting studies of domesticated zebra finches, as well as studies of other domesticated species.
- Published
- 2017
43. Differential activation of endocrine-immune networks by arthritis challenge: Insights from colony-specific responses
- Author
-
Todd S. Woodward, Tamara S. Bodnar, Joanne Weinberg, Katie M. Lavigne, Matthew D. Taves, and Kiran K. Soma
- Subjects
Male ,0301 basic medicine ,medicine.medical_specialty ,Chemokine ,medicine.medical_treatment ,Science ,Arthritis ,Endocrine System ,Disease ,Host Specificity ,Article ,Arthritis, Rheumatoid ,03 medical and health sciences ,0302 clinical medicine ,Immune system ,Internal medicine ,medicine ,Animals ,Hormone metabolism ,Multidisciplinary ,biology ,medicine.disease ,Arthritis, Experimental ,Hormones ,Pathophysiology ,Rats ,Disease Models, Animal ,030104 developmental biology ,Endocrinology ,Cytokine ,Organ Specificity ,Immune System ,Rheumatoid arthritis ,Immunology ,biology.protein ,Cytokines ,Medicine ,Female ,Inflammation Mediators ,Biomarkers ,030217 neurology & neurosurgery - Abstract
Rheumatoid arthritis (RA) is a chronic inflammatory condition with variable clinical presentation and disease progression. Importantly, animal models of RA are widely used to examine disease pathophysiology/treatments. Here, we exploited known vendor colony-based differences in endocrine/immune responses to gain insight into inflammatory modulators in arthritis, utilizing the adjuvant-induced arthritis (AA) model. Our previous study found that Sprague-Dawley (SD) rats from Harlan develop more severe AA, have lower corticosteroid binding globulin, and have different patterns of cytokine activation in the hind paw, compared to SD rats from Charles River. Here, we extend these findings, demonstrating that Harlan rats show reduced hypothalamic cytokine responses to AA, compared to Charles River rats, and identify colony-based differences in cytokine profiles in hippocampus and spleen. To go beyond individual measures, probing for networks of variables underlying differential responses, we combined datasets from this and the previous study and performed constrained principal component analysis (CPCA). CPCA revealed that with AA, Charles River rats show activation of chemokine and central cytokine networks, whereas Harlan rats activate peripheral immune/hypothalamic-pituitary-adrenal networks. These data suggest differential underlying disease mechanism(s), highlighting the power of evaluating multiple disease biomarkers, with potential implications for understanding differential disease profiles in individuals with RA.
- Published
- 2017
44. Tyramide Signal Amplification Permits Immunohistochemical Analyses of Androgen Receptors in the Rat Prefrontal Cortex
- Author
-
Chunqi Ma, Kiran K. Soma, and Katelyn L. Low
- Subjects
Male ,0301 basic medicine ,medicine.medical_specialty ,Histology ,medicine.drug_class ,Biotin ,Prefrontal Cortex ,Tyramine ,Hippocampus ,03 medical and health sciences ,Sex Factors ,0302 clinical medicine ,Internal medicine ,medicine ,Animals ,Rats, Long-Evans ,Prefrontal cortex ,biology ,Articles ,Androgen ,Immunohistochemistry ,Rats, Inbred F344 ,Rats ,Androgen receptor ,030104 developmental biology ,Endocrinology ,medicine.anatomical_structure ,nervous system ,Receptors, Androgen ,Forebrain ,biology.protein ,Female ,Orbitofrontal cortex ,Neuron ,Anatomy ,NeuN ,Neuroscience ,030217 neurology & neurosurgery - Abstract
Research on neural androgen receptors (ARs) has traditionally focused on brain regions that regulate reproductive and aggressive behaviors, such as the hypothalamus and amygdala. Although many cells in the prefrontal cortex (PFC) also express ARs, the number of ARs per cell appears to be much lower, and thus, AR immunostaining is often hard to detect and quantify in the PFC. Here, we demonstrate that biotin tyramide signal amplification (TSA) dramatically increases AR immunoreactivity in the rat brain, including critical regions of the PFC such as the medial PFC (mPFC) and orbitofrontal cortex (OFC). We show that TSA is useful for AR detection with both chromogenic and immunofluorescent immunohistochemistry. Double-labeling studies reveal that AR+ cells in the PFC and hippocampus are NeuN+ but not GFAP+ and thus primarily neuronal. Finally, in gonadally intact rats, more AR+ cells are present in the mPFC and OFC of males than of females. Future studies can use TSA to further examine AR immunoreactivity across ages, sexes, strains, and different procedures (e.g., fixation methods). In light of emerging evidence for the androgen regulation of executive function and working memory, these results may help understand the distribution and roles of ARs in the PFC.
- Published
- 2017
45. Early-life antibiotic treatment enhances the pathogenicity of CD4+ T cells during intestinal inflammation
- Author
-
Georgia Perona-Wright, Mathieu Lupien, Tiago Medina, Daniel D. De Carvalho, Sebastian Scheer, Frann Antignano, Alex Murison, Cheryl H. Arrowsmith, Kiran K. Soma, Colby Zaph, Matthew D. Taves, and Alistair Chenery
- Subjects
0301 basic medicine ,medicine.medical_specialty ,medicine.drug_class ,T cell ,Immunology ,Antibiotics ,Biology ,Inflammatory bowel disease ,03 medical and health sciences ,chemistry.chemical_compound ,Corticosterone ,In vivo ,Internal medicine ,medicine ,Immunology and Allergy ,Cell Biology ,computer.file_format ,medicine.disease ,Phenotype ,030104 developmental biology ,Endocrinology ,medicine.anatomical_structure ,chemistry ,ABX test ,computer ,Ex vivo - Abstract
The incidence of inflammatory bowel diseases (IBDs) has steadily increased in recent decades—a phenomenon that cannot be explained by genetic mutations alone. Other factors, including the composition of the intestinal microbiome, are potentially important contributors to the increased occurrence of this group of diseases. Previous reports have shown a correlation between early-life antibiotic (Abx) treatment and an increased incidence of IBD. In this report, we investigated the effects of early-life Abx treatments on the pathogenicity of CD4+ T cells using an experimental T cell transfer model of IBD. Our results show that CD4+ T cells isolated from adult mice that had been treated with Abx during gestation and in early life induced a faster onset of IBD in Rag1-deficient mice compared with CD4+ T cells of untreated mice. Ex vivo functional analyses of IBD-inducing CD4+ T cells did not show significant differences in their immunologic potential ex vivo, despite their in vivo phenotype. However, genome-wide gene-expression analysis revealed that these cells displayed dysregulated expression of genes associated with cell-cycle regulation, metabolism, and cellular stress. Analysis of Abx-treated CD4+ T cell donors showed systemically elevated levels of the stress hormone corticosterone throughout life compared with untreated donors. The cohousing of Abx-treated mice with untreated mice decreased serum corticosterone, and a consequent transfer of the cells from cohoused mice into Rag1-deficient mice restored the onset and severity of disease to that of untreated animals. Thus, our results suggest that early-life Abx treatment results in a stress response with high levels of corticosterone that influences CD4+ T cell function.
- Published
- 2016
46. Effects of aging on testosterone and androgen receptors in the mesocorticolimbic system of male rats
- Author
-
Kiran K. Soma, Katelyn L. Low, Ryan J. Tomm, Chunqi Ma, Stan B. Floresco, and Daniel J. Tobiansky
- Subjects
Male ,medicine.medical_specialty ,Aging ,Neuroactive steroid ,medicine.drug_class ,Prefrontal Cortex ,Nucleus accumbens ,Nucleus Accumbens ,03 medical and health sciences ,Behavioral Neuroscience ,Executive Function ,0302 clinical medicine ,Endocrinology ,Internal medicine ,Rats, Inbred BN ,medicine ,Animals ,Testosterone ,Prefrontal cortex ,Behavior, Animal ,Endocrine and Autonomic Systems ,business.industry ,musculoskeletal, neural, and ocular physiology ,Ventral Tegmental Area ,Androgen ,Rats, Inbred F344 ,030227 psychiatry ,Rats ,Ventral tegmental area ,Androgen receptor ,medicine.anatomical_structure ,nervous system ,Receptors, Androgen ,Orbitofrontal cortex ,business ,psychological phenomena and processes ,030217 neurology & neurosurgery - Abstract
As males age, systemic testosterone (T) levels decline. T regulates executive function, a collection of cognitive processes that are mediated by the mesocorticolimbic system. Here, we examined young adult (5 months) and aged (22 months) male Fischer 344 × Brown Norway rats, and measured systemic T levels in serum and local T levels in microdissected nodes of the mesocorticolimbic system (ventral tegmental area (VTA), nucleus accumbens (NAc), medial prefrontal cortex (mPFC), and orbitofrontal cortex (OFC)). We also measured androgen receptor (AR) immunoreactivity (-ir) in the mesocorticolimbic system. As expected, systemic T levels decreased with age. Local T levels in mesocorticolimbic regions – except the VTA – also decreased with age. Mesocorticolimbic T levels were higher than serum T levels at both ages. AR-ir was present in the VTA, NAc, mPFC, and OFC and decreased with age in the mPFC. Taken together with previous results, the data suggest that changes in androgen signaling may contribute to changes in executive function during aging.
- Published
- 2019
47. 290-LB: Repeated Neonatal Oral Sucrose Treatment Affects Growth and Insulin-Like Growth Factor-1 in Mice
- Author
-
Alejandra M. Wiedeman, Kiran K. Soma, Cynthia Yamilka Ramirez Contreras, Melody Salehzadeh, Arya E. Mehran, Nicha Boonpattrawong, Liisa Holsti, Ei-Xia Mussai, Angela M. Devlin, and Manon Ranger
- Subjects
chemistry.chemical_compound ,Insulin-like growth factor ,Health services ,Sucrose ,chemistry ,business.industry ,Endocrinology, Diabetes and Metabolism ,medicine.medical_treatment ,Internal Medicine ,Physiology ,Medicine ,business - Abstract
Premature infants ( Disclosure C.Y. Ramirez Contreras: None. E. Mussai: None. A.M. Wiedeman: None. A. Mehran: None. M. Salehzadeh: None. N. Boonpattrawong: None. M. Ranger: None. K.K. Soma: None. L. Holsti: Other Relationship; Self; Provincial Health Services Association. A.M. Devlin: None. Funding British Columbia Children's Hospital Research Institute
- Published
- 2019
48. Precision Analysis of the Xe136 Two-Neutrino ββ Spectrum in KamLAND-Zen and Its Impact on the Quenching of Nuclear Matrix Elements
- Author
-
A. Gando, T. O'Donnell, Y. Kamei, Sanshiro Enomoto, S. Hirata, S. Hayashida, Yu. Efremenko, K. Soma, M Ha Minh, S. Umehara, Hugon J Karwowski, Fedor Šimkovic, Hideki Watanabe, Y. Gando, K. Tamae, John G. Learned, S. Matsuda, B. K. Fujikawa, B. E. Berger, K. Ueshima, S. Otsuka, J. A. Detwiler, Lindley Winslow, S. Obara, D. M. Markoff, K. Hosokawa, Akira Ono, J. Maricic, H. Ozaki, N. Ota, Toyohiko Kinoshita, D. Chernyak, M. P. Decowski, Y. Honda, Ken-Ichi Fushimi, A. Suzuki, T. Mitsui, T. Hachiya, K. Nakamura, A. Kozlov, Koji Ishidoshiro, Werner Tornow, K. Kamizawa, Y Takemoto, Kunio Inoue, I. Shimizu, R Dvornický, Tsugio Sato, S. Yoshida, H. Ikeda, Y. Shibukawa, A. Takeuchi, J. Shirai, Y. Shirahata, M. Koga, and Javier Fernandez Menendez
- Subjects
Nuclear physics ,Physics ,Formalism (philosophy of mathematics) ,Quasiparticle ,Nuclear shell model ,General Physics and Astronomy ,Electron ,Neutrino - Abstract
We present a precision analysis of the ^{136}Xe two-neutrino ββ electron spectrum above 0.8 MeV, based on high-statistics data obtained with the KamLAND-Zen experiment. An improved formalism for the two-neutrino ββ rate allows us to measure the ratio of the leading and subleading 2νββ nuclear matrix elements (NMEs), ξ_{31}^{2ν}=-0.26_{-0.25}^{+0.31}. Theoretical predictions from the nuclear shell model and the majority of the quasiparticle random-phase approximation (QRPA) calculations are consistent with the experimental limit. However, part of the ξ_{31}^{2ν} range allowed by the QRPA is excluded by the present measurement at the 90% confidence level. Our analysis reveals that predicted ξ_{31}^{2ν} values are sensitive to the quenching of NMEs and the competing contributions from low- and high-energy states in the intermediate nucleus. Because these aspects are also at play in neutrinoless ββ decay, ξ_{31}^{2ν} provides new insights toward reliable neutrinoless ββ NMEs.
- Published
- 2019
49. Pubertal development of estradiol-induced hypothalamic progesterone synthesis
- Author
-
Margaret A. Mohr, Paul E. Micevych, Angela M. Wong, Kiran K. Soma, and Ryan J. Tomm
- Subjects
Stimulation ,Gonadotropin-releasing hormone ,Reproductive health and childbirth ,Medical and Health Sciences ,Gonadotropin-Releasing Hormone ,Behavioral Neuroscience ,0302 clinical medicine ,Endocrinology ,Kisspeptin ,Tandem Mass Spectrometry ,Sexual Maturation ,Progesterone ,media_common ,Neurons ,Pediatric ,Chromatography ,Liquid ,Estradiol ,Biological Sciences ,Hypothalamus ,Ovariectomized rat ,Female ,Luteinizing hormone ,hormones, hormone substitutes, and hormone antagonists ,medicine.medical_specialty ,medicine.drug_class ,media_common.quotation_subject ,1.1 Normal biological development and functioning ,Biology ,Behavioral Science & Comparative Psychology ,Article ,03 medical and health sciences ,Underpinning research ,Internal medicine ,medicine ,Animals ,Rats, Long-Evans ,Ovulation ,Brain Chemistry ,Endocrine and Autonomic Systems ,Contraception/Reproduction ,Neurosciences ,Long-Evans ,Luteinizing Hormone ,Estrogen ,030227 psychiatry ,Rats ,Astrocytes ,Liquid chromatography tandem mass spectrometry ,Nerve Net ,030217 neurology & neurosurgery ,Chromatography, Liquid - Abstract
In females, a hallmark of puberty is the luteinizing hormone (LH) surge that triggers ovulation. Puberty initiates estrogen positive feedback onto hypothalamic circuits, which underlie the stimulation of gonadotropin releasing hormone (GnRH) neurons. In reproductively mature female rodents, both estradiol (E2) and progesterone (P4) signaling are necessary to stimulate the surge release of GnRH and LH. Estradiol membrane-initiated signaling facilitates progesterone (neuroP) synthesis in hypothalamic astrocytes, which act on E2-induced progesterone receptors (PGR) to stimulate kisspeptin release, thereby activating GnRH release. How the brain changes during puberty to allow estrogen positive feedback remains unknown. In the current study, we hypothesized that a critical step in estrogen positive feedback was the ability for estradiol-induced neuroP synthesis. To test this idea, hypothalamic neuroP levels were measured in groups of prepubertal, pubertal and young adult female Long Evans rats. Steroids were measured with liquid chromatography tandem mass spectrometry (LC-MS/MS). Hypothalamic neuroP increases from pre-puberty to young adulthood in both gonad-intact females and ovariectomized rats treated with E2. The pubertal development of hypothalamic E2-facilitated progesterone synthesis appears to be one of the neural switches facilitating reproductive maturation.
- Published
- 2019
50. Reprint of 'Concepts derived from the Challenge Hypothesis'
- Author
-
Wolfgang Goymann, Cecilia Jalabert, John C. Wingfield, and Kiran K. Soma
- Subjects
endocrine system ,Endocrine and Autonomic Systems ,Aggression ,Biology ,Social cue ,biology.organism_classification ,030227 psychiatry ,Songbird ,03 medical and health sciences ,Behavioral Neuroscience ,Testosterone Secretion ,0302 clinical medicine ,Endocrinology ,Challenge hypothesis ,medicine ,medicine.symptom ,Neuroscience ,030217 neurology & neurosurgery ,Testosterone ,Hormone - Abstract
The Challenge Hypothesis was developed to explain why and how regulatory mechanisms underlying patterns of testosterone secretion vary so much across species and populations as well as among and within individuals. The hypothesis has been tested many times over the past 30years in all vertebrate groups as well as some invertebrates. Some experimental tests supported the hypothesis but many did not. However, the emerging concepts and methods extend and widen the Challenge Hypothesis to potentially all endocrine systems, and not only control of secretion, but also transport mechanisms and how target cells are able to adjust their responsiveness to circulating levels of hormones independently of other tissues. The latter concept may be particularly important in explaining how tissues respond differently to the same hormone concentration. Responsiveness of the hypothalamo-pituitary-gonad (HPG) axis to environmental and social cues regulating reproductive functions may all be driven by gonadotropin-releasing hormone (GnRH) or gonadotropin-inhibiting hormone (GnIH), but the question remains as to how different contexts and social interactions result in stimulation of GnRH or GnIH release. These concepts, although suspected for many decades, continue to be explored as integral components of environmental endocrinology and underlie fundamental mechanisms by which animals, including ourselves, cope with a changing environment. Emerging mass spectrometry techniques will have a tremendous impact enabling measurement of multiple steroids in specific brain regions. Such data will provide greater spatial resolution for studying how social challenges impact multiple steroids within the brain. Potentially the Challenge Hypothesis will continue to stimulate new ways to explore hormone-behavior interactions and generate future hypotheses.
- Published
- 2019
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