543 results on '"K. Kelleher"'
Search Results
2. Varied midlatitude shortwave cloud radiative responses to Southern Hemisphere circulation shifts
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Mitchell K. Kelleher and Kevin M. Grise
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Hadley cell expansion ,midlatitude jet shifts ,shortwave cloud radiative effects ,Meteorology. Climatology ,QC851-999 - Abstract
Abstract Changes in midlatitude clouds as a result of shifts in general circulation patterns are widely thought to be a potential source of radiative feedbacks onto the climate system. Previous work has suggested that two general circulation shifts anticipated to occur in a warming climate, poleward shifts in the midlatitude jet streams and a poleward expansion of the Hadley circulation, are associated with differing effects on midlatitude clouds. This study examines two dynamical cloud‐controlling factors, mid‐tropospheric vertical velocity, and the estimated inversion strength (EIS) of the marine boundary layer temperature inversion, to explain why poleward shifts in the Southern Hemisphere midlatitude jet and Hadley cell edge have varying shortwave cloud‐radiative responses at midlatitudes. Changes in vertical velocity and EIS occur further equatorward for poleward shifts in the Hadley cell edge than they do for poleward shifts of the midlatitude jet. Because the sensitivity of shortwave cloud radiative effects (SWCRE) to variations in vertical velocity and EIS is a function of latitude, the SWCRE anomalies associated with jet and Hadley cell shifts differ. The dynamical changes associated with a poleward jet shift occur further poleward in a regime where the sensitivities of SWCRE to changes in vertical velocity and EIS balance, leading to a near‐net zero change in SWCRE in midlatitudes with a poleward jet shift. Conversely, the dynamical changes associated with Hadley cell expansion occur further equatorward at a latitude where the sensitivity of SWCRE is more strongly associated with changes in mid‐tropospheric vertical velocity, leading to a net shortwave cloud radiative warming effect in midlatitudes.
- Published
- 2022
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3. Midlatitude Cloud Radiative Effect Sensitivity to Cloud Controlling Factors in Observations and Models: Relationship with Southern Hemisphere Jet Shifts and Climate Sensitivity
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Kevin M. Grise and Mitchell K. Kelleher
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Atmospheric Science ,Jet (fluid) ,business.industry ,Climatology ,Middle latitudes ,Environmental science ,Climate sensitivity ,Cloud computing ,Sensitivity (control systems) ,business ,Southern Hemisphere ,Physics::Atmospheric and Oceanic Physics ,Cloud radiative effect - Abstract
An effective method to understand cloud processes and to assess the fidelity with which they are represented in climate models is the cloud controlling factor framework, in which cloud properties are linked with variations in large-scale dynamical and thermodynamical variables. This study examines how midlatitude cloud radiative effects (CRE) over oceans co-vary with four cloud controlling factors: mid-tropospheric vertical velocity, estimated inversion strength (EIS), near-surface temperature advection, and sea surface temperature (SST), and assesses their representation in CMIP6 models with respect to observations and CMIP5 models.CMIP5 and CMIP6 models overestimate the sensitivity of midlatitude CRE to perturbations in vertical velocity, and underestimate the sensitivity of midlatitude shortwave CRE to perturbations in EIS and temperature advection. The largest improvement in CMIP6 models is a reduced sensitivity of CRE to vertical velocity perturbations. As in CMIP5 models, many CMIP6 models simulate a shortwave cloud radiative warming effect associated with a poleward shift in the Southern Hemisphere (SH) midlatitude jet stream, an effect not present in observations. This bias arises because most models’ shortwave CRE are too sensitive to vertical velocity perturbations and not sensitive enough to EIS perturbations, and because most models overestimate the SST anomalies associated with SH jet shifts. The presence of this bias directly impacts the transient surface temperature response to increasing greenhouse gases over the Southern Ocean, but not the global-mean surface temperature. Instead, the models’ climate sensitivity is correlated with their shortwave CRE sensitivity to surface temperature advection perturbations near 40°S, with models with more realistic values of temperature advection sensitivity generally having higher climate sensitivity.
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- 2021
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4. Oncogenic metabolic rewiring independent of proliferative control in human mammary epithelial cells
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Wentao Dong, Mark A. Keibler, Sun Jin Moon, Patricia Cho, Nian Liu, Christian J. Berrios, Joanne K. Kelleher, Hadley D. Sikes, Othon Iliopoulos, Jonathan L. Coloff, Matthew G. Vander Heiden, and Gregory Stephanopoulos
- Abstract
SummaryThe use of isotopic tracers and metabolic flux analysis (MFA) has unveiled a number of metabolic pathways differentially activated in cancer cells. To support efforts to design effective metabolic therapies for cancer, we sought to distinguish metabolic behavior in cancer versus normal cells growing at the same rate. To this end, we performed13C-isotope tracing and MFA in human mammary epithelial cells (HMECs) harboring different combinations of oncogenes. By introducing a new quantity termed metabolic flux intensity, defined as pathway flux divided by specific growth rate, we showed that metabolism is dually controlled by proliferation and oncogenotypes.13C-MFA further revealed that oxidative pentose phosphate pathway (oxPPP), malate dehydrogenase (MDH) and isocitrate dehydrogenase (IDH) were most enhanced in cancerous HMECs. Drug targeting of these pathways selectively reduced growth in the tumorigenic HMEC line. Our study provides direct evidence that metabolism of cancer cells is different than that of normal proliferating cells.
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- 2022
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5. NTFD - a stand-alone application for the non-targeted detection of stable isotope-labeled compounds in GC/MS data.
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Karsten Hiller, André Wegner, Daniel Weindl, Thekla Cordes, Christian M. Metallo, Joanne K. Kelleher, and Gregory Stephanopoulos
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- 2013
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6. Impact of Extracellular Acidity on the Activity of P-glycoprotein and the Cytotoxicity of Chemotherapeutic Drugs
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Oliver Thews, Birgit Gassner, Debra K. Kelleher, Gerald Schwerd, and Michael Gekle
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P-glycoprotein ,acidity ,chemotoxicity ,intracellular Ca2+ concentration ,protein kinase C ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
The expression and activity of P-glycoprotein (pGP) play a role in the multidrug resistance of tumors. Because solid-growing tumors often show pronounced hypoxia or extracellular acidosis, this study attempted to analyze the impact of an acidic environment on the expression and activity of pGP and on the cytotoxicity of chemotherapeutic agents. For this, prostate carcinoma cells were exposed to an acidic extracellular environment (pH 6.6) for up to 24 hours. pGP activity was more than doubled after 3 to 6 hours of incubation in acidic medium, whereas cellular pGP expression remained constant, indicating that increased transport rate is the result of functional modulation. In parallel, the cytotoxic efficacy of daunorubicin showed pronounced reduction at low pH, an effect that was reversible on coincubation with a pGP inhibitor. A reduction of intracellular Ca2+ concentration by 35% under acidic conditions induced a higher transport rate of pGP, an effect comparable to that found on inhibition of protein kinase C (PKC). These data indicate that pGP activity is increased by acidic pH presumably as a result of lowered intracellular calcium levels and inhibition of PKC. These findings may explain the reduced cytotoxicity of chemotherapeutic agents in hypoxic/acidic tumors.
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- 2006
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7. Varied midlatitude shortwave cloud radiative responses to Southern Hemisphere circulation shifts
- Author
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Mitchell K. Kelleher and Kevin M. Grise
- Subjects
Atmospheric Science ,Circulation (fluid dynamics) ,Meteorology. Climatology ,Climatology ,Middle latitudes ,Radiative transfer ,Environmental science ,midlatitude jet shifts ,QC851-999 ,Shortwave ,Southern Hemisphere ,Hadley cell expansion ,shortwave cloud radiative effects - Abstract
Changes in midlatitude clouds as a result of shifts in general circulation patterns are widely thought to be a potential source of radiative feedbacks onto the climate system. Previous work has suggested that two general circulation shifts anticipated to occur in a warming climate, poleward shifts in the midlatitude jet streams and a poleward expansion of the Hadley circulation, are associated with differing effects on midlatitude clouds. This study examines two dynamical cloud‐controlling factors, mid‐tropospheric vertical velocity, and the estimated inversion strength (EIS) of the marine boundary layer temperature inversion, to explain why poleward shifts in the Southern Hemisphere midlatitude jet and Hadley cell edge have varying shortwave cloud‐radiative responses at midlatitudes. Changes in vertical velocity and EIS occur further equatorward for poleward shifts in the Hadley cell edge than they do for poleward shifts of the midlatitude jet. Because the sensitivity of shortwave cloud radiative effects (SWCRE) to variations in vertical velocity and EIS is a function of latitude, the SWCRE anomalies associated with jet and Hadley cell shifts differ. The dynamical changes associated with a poleward jet shift occur further poleward in a regime where the sensitivities of SWCRE to changes in vertical velocity and EIS balance, leading to a near‐net zero change in SWCRE in midlatitudes with a poleward jet shift. Conversely, the dynamical changes associated with Hadley cell expansion occur further equatorward at a latitude where the sensitivity of SWCRE is more strongly associated with changes in mid‐tropospheric vertical velocity, leading to a net shortwave cloud radiative warming effect in midlatitudes.
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- 2021
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8. Quantifying carbon sources for de novo lipogenesis in wild-type and IRS-1 knockout brown adipocytes
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Hyuntae Yoo, Gregory Stephanopoulos, and Joanne K. Kelleher
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insulin receptor substrate-1 ,13C ,isotopomer ,gas chromatography-mass spectrometry ,adipogenesis ,glucose ,Biochemistry ,QD415-436 - Abstract
Studies were conducted to evaluate the flux of various carbon sources to lipogenesis during brown adipocyte differentiation. 13C labeling and isotopomer spectral analysis quantified the contribution of metabolites to de novo lipogenesis in wild-type (WT) and insulin receptor substrate-1 knockout (KO) brown adipocytes. Both glucose (Glc) and glutamine (Gln) provided substantial fractions of the lipogenic acetyl CoA for both WT and KO cells in standard media, together contributing 60%. Adding acetoacetate (AcAc; 10 mM) to the medium resulted in a large flux of AcAc to lipid, representing 70% of the lipogenic acetyl CoA and decreasing the contribution of Glc plus Gln to 30%. For WT cells, the fractional synthesis of new fatty acids during 4 days of differentiation was 80% of the total. Similarly, 80% of the lipidic glycerol was derived from Glc in the medium; Gln was not a precursor for glycerol. When Gln was removed from the medium, the contribution of Glc to fatty acid synthesis doubled, replacing most of the contribution of Gln and maintaining total lipogenesis. Conversely, removal of Glc dramatically decreased lipogenesis.These results indicate that Glc's distinct role in lipid synthesis during differentiation cannot be replaced by other carbon sources, consistent with the role of Glc supplying NADPH and/or glycerol for triglyceride synthesis.
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- 2004
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9. Dissecting Mammalian Cell Metabolism through 13C- and 2H-Isotope Tracing: Interpretations at the Molecular and Systems Levels
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Joanne K. Kelleher, Wentao Dong, Sun Jin Moon, and Gregory Stephanopoulos
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Isotope ,Biochemistry ,Chemistry ,General Chemical Engineering ,Mammalian cell ,General Chemistry ,Metabolism ,Tracing ,Industrial and Manufacturing Engineering - Abstract
Isotopic tracers have been widely used to probe specific pathways within metabolic networks. Tracers are metabolized through various metabolic routes, generating differential labeling patterns. Cor...
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- 2019
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10. Examining Southern Ocean Cloud Controlling Factors on Daily Time Scales and Their Connections to Midlatitude Weather Systems
- Author
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Mitchell K. Kelleher and Kevin M. Grise
- Subjects
Atmospheric Science ,010504 meteorology & atmospheric sciences ,business.industry ,Cloud computing ,010502 geochemistry & geophysics ,01 natural sciences ,Anticyclone ,Middle latitudes ,Climatology ,General Circulation Model ,Radiative transfer ,Extratropical cyclone ,Environmental science ,business ,Shortwave ,Large model ,0105 earth and related environmental sciences - Abstract
Clouds and their associated radiative effects are a large source of uncertainty in global climate models. One region with particularly large model biases in shortwave cloud radiative effects (CRE) is the Southern Ocean. Previous research has shown that many dynamical “cloud controlling factors” influence shortwave CRE on monthly time scales and that two important cloud controlling factors over the Southern Ocean are midtropospheric vertical velocity and estimated inversion strength (EIS). Model errors may thus arise from biases in representing cloud controlling factors (atmospheric dynamics) or in representing how clouds respond to those cloud controlling factors (cloud parameterizations), or some combination thereof. This study extends previous work by examining cloud controlling factors over the Southern Ocean on daily time scales in both observations and global climate models. This allows the cloud controlling factors to be examined in the context of transient weather systems. Composites of EIS and midtropospheric vertical velocity are constructed around extratropical cyclones and anticyclones to examine how the different dynamical cloud controlling factors influence shortwave CRE around midlatitude weather systems and to assess how models compare to observations. On average, models tend to produce a realistic cyclone and anticyclone, when compared to observations, in terms of the dynamical cloud controlling factors. The difference between observations and models instead lies in how the models’ shortwave CRE respond to the dynamics. In particular, the models’ shortwave CRE are too sensitive to perturbations in midtropospheric vertical velocity and, thus, they tend to produce clouds that excessively brighten in the frontal region of the cyclone and excessively dim in the center of the anticyclone.
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- 2019
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11. Neutral sterols of rat epididymis: high concentrations of dehydrocholesterols in rat caput epididymidis
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Bernhard Lindenthal, Tayseer A. Aldaghlas, Joanne K. Kelleher, Stephan M. Henkel, René Tolba, Gerhard Haidl, and Klaus von Bergmann
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cholesterol ,desmosterol ,7-dehydrocholesterol ,spermatozoa ,testis ,Smith-Lemli-Opitz syndrome ,Biochemistry ,QD415-436 - Abstract
Phospholipids and sterols are known to have multiple functions in reproductive tissue of mammals. High concentrations of the cholesterol precursor desmosterol have been described in testis, epididymis, and spermatozoa of various species. These findings and the recent discovery of some cholesterol precursors as meiosis-activating sterols suggest important functions of cholesterol precursors in fertility. Many sterol intermediates appear from the 19-step conversion of lanosterol, the first sterol synthesized in the cascade of cholesterol synthesis, to cholesterol. The biochemical basis of the genetically inherited Smith-Lemli-Opitz syndrome has been described as a defective conversion of 7-dehydrocholesterol to cholesterol. Since this discovery, interest has focused on this special cholesterol precursor. Here, we report high concentrations of 7- and 8-dehydrocholesterol in caput epididymidis and spermatozoa derived from caput epididymidis of Sprague-Dawley and Wistar rats, which comprised up to 30% of total sterols. In contrast to caput epididymidis, 7- and 8-dehydrocholesterol were barely detected in cauda epididymidis or testis. Desmosterol increased several times from caput to cauda epididymidis. This is the first report of the natural appearance of high concentrations of dehydrocholesterols in mammalian tissue, and it underlines the putative importance of cholesterol precursors in reproductive tissue.—Lindenthal, B., T. A. Aldaghlas, J. K. Kelleher, S. M. Henkel, R. Tolba, G. Haidl, and K. von Bergmann. Neutral sterols of rat epididymis: high concentrations of dehydrocholesterols in rat caput epididymidis. J. Lipid Res. 2001. 42: 1089–1095.
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- 2001
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12. Differential Substrate Use in EGF- and Oncogenic KRAS-Stimulated Human Mammary Epithelial Cells
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Aasavari S. Phanse, Lucas B. Sullivan, Matthew G. Vander Heiden, Sun Jin Moon, Mark A. Keibler, Jonathan L. Coloff, Aaron M. Hosios, Gregory Stephanopoulos, Nian Liu, Orlando D. Arevalo, Joanne K. Kelleher, Keegan Korthauer, Kailing Ho, Othon Iliopoulos, Wentao Dong, Keene L. Abbott, and Jennifer G. Lee
- Subjects
0301 basic medicine ,Carcinogenesis ,Glutamine ,Glutamic Acid ,Breast Neoplasms ,medicine.disease_cause ,Biochemistry ,Article ,Proto-Oncogene Proteins p21(ras) ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Epidermal growth factor ,medicine ,Tumor Cells, Cultured ,Animals ,Humans ,Breast ,Lactic Acid ,Mammary Glands, Human ,Molecular Biology ,Fatty acid synthesis ,Cell Proliferation ,Glucose Transporter Type 1 ,biology ,Epidermal Growth Factor ,Chemistry ,Cell growth ,Epithelial Cells ,Cell Biology ,Cell biology ,Gene Expression Regulation, Neoplastic ,030104 developmental biology ,Glucose ,030220 oncology & carcinogenesis ,Lipogenesis ,Cancer cell ,biology.protein ,GLUT1 ,Female ,KRAS - Abstract
Many metabolic phenotypes in cancer cells are also characteristic of proliferating non-transformed mammalian cells, and attempts to distinguish between phenotypes resulting from oncogenic perturbation from those associated with increased proliferation are limited. Here, we examined the extent to which metabolic changes corresponding to oncogenic KRAS expression differed from those corresponding to epidermal growth factor (EGF)-driven proliferation in human mammary epithelial cells (HMECs). Removal of EGF from culture medium reduced growth rates and glucose/glutamine consumption in control HMECs despite limited changes in respiration and fatty acid synthesis, while the relative contribution of branched-chain amino acids to the TCA cycle and lipogenesis increased in the near-quiescent conditions. Most metabolic phenotypes measured in HMECs expressing mutant KRAS were similar to those observed in EGF-stimulated control HMECs that were growing at comparable rates. However, glucose and glutamine consumption as well as lactate and glutamate production were lower in KRAS-expressing cells cultured in media without added EGF, and these changes correlated with reduced sensitivity to GLUT1 inhibitor and phenformin treatment. Our results demonstrate the strong dependence of metabolic behavior on growth rate, and provide a model to distinguish the metabolic influences of oncogenic mutations and non-oncogenic growth.
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- 2021
13. Monte Carlo spreadsheet modeling of stable isotope biosynthesis.
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Thomas M. Masterson and Joanne K. Kelleher
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- 1996
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14. Acetyl-L-carnitine flux to lipids in cells estimated using isotopomer spectral analysis
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L Lligona-Trulla, A Arduini, T A Aldaghlas, M Calvani, and J K Kelleher
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Biochemistry ,QD415-436 - Abstract
Acetyl-L-carnitine is known as a reservoir of activated acetyl units and as a modulator of metabolic function. The objective of this study was to quantify the fate of the acetyl moiety of acetyl-L-carnitine in lipogenic pathways. Lipogenesis was studied in an adipocyte model, differentiated 3T3-L1 cells, and a hepatoma cell, HepG2 cells. Lipogenesis and ketogenesis were examined in rat hepatocytes. Both de novo synthesis and elongation of fatty acids were investigated using gas chromatography/mass spectrometry and [1,2-(13)C]acetyl-L-carnitine. Comparisons were performed with [13C]glucose and [13C]acetate. Isotopomer Spectral Analysis, a stable isotope method for differentiating between the enrichment of the precursor and the amount of synthesis was used to analyze the data. Acetyl-L-carnitine was generally less effective than acetate as a precursor for de novo lipogenesis. The effects of acetyl-L-carnitine were not identical to those of acetate plus carnitine as expected if acetyl-L-carnitine flux to acetyl CoA is controlled by carnitine acetyl transferase. Acetyl-L-carnitine (2 mM) contributed approximately 10% of the lipogenic acetyl-CoA used for synthesis and elongation as well as 6% of the ketogenic acetyl-CoA. No differences were found between the precursor enrichment for de novo lipogenesis and for elongation of saturated fatty acids. Flux of acetyl-L-carnitine to lipid was increased, not decreased, by the ATP citrate lyase inhibitor, -hydroxycitrate. In contrast, flux of glucose to lipid was dramatically decreased by this inhibitor. These results indicate that flux of acetyl-L-carnitine to lipid can bypass citrate and utilize cytosolic acetyl-CoA synthesis.
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- 1997
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15. Remote Consultations (RCs): a Survey of Oncology Practices and Patient Experience
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A. Anasova, K. Kelleher, C. Dancyger, E. Hales, N. Suttie, B. Bryne, V. Gajapathy, G. Anand, and K. Khan
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Oncology ,Radiology, Nuclear Medicine and imaging - Published
- 2022
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16. Ketogenic essential amino acids modulate lipid synthetic pathways and prevent hepatic steatosis in mice.
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Yasushi Noguchi, Natsumi Nishikata, Nahoko Shikata, Yoshiko Kimura, Jose O Aleman, Jamey D Young, Naoto Koyama, Joanne K Kelleher, Michio Takahashi, and Gregory Stephanopoulos
- Subjects
Medicine ,Science - Abstract
Although dietary ketogenic essential amino acid (KAA) content modifies accumulation of hepatic lipids, the molecular interactions between KAAs and lipid metabolism are yet to be fully elucidated.We designed a diet with a high ratio (E/N) of essential amino acids (EAAs) to non-EAAs by partially replacing dietary protein with 5 major free KAAs (Leu, Ile, Val, Lys and Thr) without altering carbohydrate and fat content. This high-KAA diet was assessed for its preventive effects on diet-induced hepatic steatosis and whole-animal insulin resistance. C57B6 mice were fed with a high-fat diet, and hyperinsulinemic ob/ob mice were fed with a high-fat or high-sucrose diet. The high-KAA diet improved hepatic steatosis with decreased de novo lipogenesis (DNL) fluxes as well as reduced expressions of lipogenic genes. In C57B6 mice, the high-KAA diet lowered postprandial insulin secretion and improved glucose tolerance, in association with restored expression of muscle insulin signaling proteins repressed by the high-fat diet. Lipotoxic metabolites and their synthetic fluxes were also evaluated with reference to insulin resistance. The high-KAA diet lowered muscle and liver ceramides, both by reducing dietary lipid incorporation into muscular ceramides and preventing incorporation of DNL-derived fatty acids into hepatic ceramides.Our results indicate that dietary KAA intake improves hepatic steatosis and insulin resistance by modulating lipid synthetic pathways.
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- 2010
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17. Hair cortisol and depression among homeless youth
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J.L. Ford, N. Slesnick, K. Kelleher, L.J. Chavez, E. Holowacz, E. Luthy, L. Pinkus, B. Brakenhoff, and X. Feng
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Psychiatry and Mental health ,Endocrinology ,Endocrine and Autonomic Systems ,Endocrinology, Diabetes and Metabolism ,Biological Psychiatry - Published
- 2021
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18. Factor structure, stability, and congruence in the functional movement screen
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Tyson A.C. Beach, David M. Frost, Andrew M. Johnson, Leila K. Kelleher, and James P. Dickey
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education.field_of_study ,movement testing ,Varimax rotation ,05 social sciences ,Population ,Congruence coefficient ,050401 social sciences methods ,Physical Therapy, Sports Therapy and Rehabilitation ,030229 sport sciences ,Test validity ,Factor structure ,Injury prediction ,03 medical and health sciences ,0302 clinical medicine ,0504 sociology ,Congruence (geometry) ,fitness testing ,Statistics ,Principal component analysis ,Medicine and Health Sciences ,Orthopedics and Sports Medicine ,education ,Functional movement ,Mathematics - Abstract
© 2017 Taylor & Francis. The scoring scheme for the functional movement screen implicitly assumes that the factor structure is consistent, stable, and congruent across different populations. To determine if this is the case, we compared principal components analyses of three samples: a healthy, general population (n = 100), a group of varsity athletes (n = 101), and a group of firefighters (n = 397). The congruence of the principal components derived through these analyses were evaluated across all of the samples, using Tucker’s congruence coefficient. Factor extraction was guided by parallel analyses, and interpretation was facilitated by Varimax rotation. We observed factor instability, low factor congruence, and inconsistent factor structure. Additionally, we observed a two-factor structure of the functional movement screen in all of our sample groups. These analyses suggest that, although the independent elements of the functional movement screen may continue to be used, use of the composite score is not supported by the factor structure of the measure.
- Published
- 2017
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19. Relationships between the Functional Movement Screen Score and Y-Balance Test Reach Distances
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Andrew M. Johnson, Ryan J. Frayne, Jordin M. Higgs, Leila K. Kelleher, Tyson A.C. Beach, and James P. Dickey
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Correlation ,Dynamic postural control ,medicine.medical_specialty ,Physical medicine and rehabilitation ,Leg length ,Statistics ,medicine ,Fitness Testing ,Balance test ,Dynamic balance ,Functional movement ,Mathematics ,Postural control - Abstract
Background: The Functional Movement Screen (FMS) is used to evaluate key movement patterns, functional symmetry, and identify individuals that are at elevated risk of injury. The purpose of this study was to assess whether dynamic postural control is a significant component of the composite FMS score by comparing it with Y-Balance Test (YBT) reach distances. Methods: Seventy-eight participants (including 40 males) performed the standardized FMS protocol followed by the YBT. The YBT reach distances were normalized to leg length and averaged between sides and trials. The individual reach directions were evaluated, and were also summed to form an aggregate YBT distance (TotalY). Results: We observed weak correlations between the composite FMS score and normalized posterolateral reach, normalized posteromedial reach, and the TotalY (r=0.36, 0.37, and 0.36, respectively; all p< 0.05). There was no correlation between the composite FMS score and normalized anterior reach (r=0.22; p=0.053). Together these findings demonstrate partial correspondence between the two tests. Conclusion: This indicates that dynamic postural control is a small component of the aggregate FMS score.
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- 2017
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20. Comparison of radon (Rn-222) concentration in Portugal and Finland underground waters
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I. Lopes, K. Kelleher, and P. Vesterbacka
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Health, Toxicology and Mutagenesis ,Liquid scintillation counting ,Public Health, Environmental and Occupational Health ,chemistry.chemical_element ,Mineralogy ,Radon ,010403 inorganic & nuclear chemistry ,01 natural sciences ,Pollution ,Original research ,030218 nuclear medicine & medical imaging ,0104 chemical sciences ,Analytical Chemistry ,03 medical and health sciences ,0302 clinical medicine ,Nuclear Energy and Engineering ,chemistry ,Environmental science ,Radiology, Nuclear Medicine and imaging ,Spectroscopy ,Groundwater - Abstract
Intercomparison results of Radon (Rn-222) measurements using two phase liquid scintillation counting (LSC) technique was performed. The results obtained are in good agreement with the assigned levels. Several water samples from different Portuguese underground catchments were also analyzed. In general, the waters showed acceptable Rn-222 levels, however, 20% presented concentrations between 500 and 1000 Bq L−1 and 5% higher than 1000 Bq L−1. In Finland, the mean Rn-222 concentration obtained in drilled wells was 460 Bq L−1 and in wells dug in soil 50 Bq L−1. Approximately 10% of drilled wells exceeded a radon concentration of 1000 Bq L−1.
- Published
- 2017
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21. Comprehensive metabolic modeling of multiple13C-isotopomer data sets to study metabolism in perfused working hearts
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Deborah M. Muoio, Scott B. Crown, Joanne K. Kelleher, Maciek R. Antoniewicz, and Rosanne Rouf
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Male ,0301 basic medicine ,Isolated Heart Preparation ,Physiology ,Energetics and Metabolism ,Biology ,Models, Biological ,Isotopomers ,Mice ,03 medical and health sciences ,chemistry.chemical_compound ,Acetyl Coenzyme A ,Heart perfusion ,Physiology (medical) ,Metabolic flux analysis ,Pyruvic Acid ,Animals ,Metabolic modeling ,Lactic Acid ,Heart metabolism ,Carbon Isotopes ,Myocardium ,Models, Cardiovascular ,Metabolism ,Metabolic Flux Analysis ,Glucose ,030104 developmental biology ,Biochemistry ,chemistry ,Pyruvic acid ,Energy Metabolism ,Cardiology and Cardiovascular Medicine ,Biological system ,Metabolic Networks and Pathways ,Oleic Acid - Abstract
In many forms of cardiomyopathy, alterations in energy substrate metabolism play a key role in disease pathogenesis. Stable isotope tracing in rodent heart perfusion systems can be used to determine cardiac metabolic fluxes, namely those relative fluxes that contribute to pyruvate, the acetyl-CoA pool, and pyruvate anaplerosis, which are critical to cardiac homeostasis. Methods have previously been developed to interrogate these relative fluxes using isotopomer enrichments of measured metabolites and algebraic equations to determine a predefined metabolic flux model. However, this approach is exquisitely sensitive to measurement error, thus precluding accurate relative flux parameter determination. In this study, we applied a novel mathematical approach to determine relative cardiac metabolic fluxes using13C-metabolic flux analysis (13C-MFA) aided by multiple tracer experiments and integrated data analysis. Using13C-MFA, we validated a metabolic network model to explain myocardial energy substrate metabolism. Four different13C-labeled substrates were queried (i.e., glucose, lactate, pyruvate, and oleate) based on a previously published study. We integrated the analysis of the complete set of isotopomer data gathered from these mouse heart perfusion experiments into a single comprehensive network model that delineates substrate contributions to both pyruvate and acetyl-CoA pools at a greater resolution than that offered by traditional methods using algebraic equations. To our knowledge, this is the first rigorous application of13C-MFA to interrogate data from multiple tracer experiments in the perfused heart. We anticipate that this approach can be used widely to study energy substrate metabolism in this and other similar biological systems.
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- 2016
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22. Compartmentation of Metabolism of the C12-, C9-, and C5-n-dicarboxylates in Rat Liver, Investigated by Mass Isotopomer Analysis
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Kristyen Tomcik, Zhicheng Jin, Henri Brunengraber, Guo-Fang Zhang, Joanne K. Kelleher, and Fang Bian
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Fatty acid metabolism ,Catabolism ,Stereochemistry ,Methylmalonic acidemia ,Cell Biology ,Metabolism ,Peroxisome ,medicine.disease ,Biochemistry ,Citric acid cycle ,chemistry.chemical_compound ,chemistry ,medicine ,Propionic acidemia ,Acetylcarnitine ,Molecular Biology ,medicine.drug - Abstract
We investigated the compartmentation of the catabolism of dodecanedioate (DODA), azelate, and glutarate in perfused rat livers, using a combination of metabolomics and mass isotopomer analyses. Livers were perfused with recirculating or nonrecirculating buffer containing one fully 13C-labeled dicarboxylate. Information on the peroxisomal versus mitochondrial catabolism was gathered from the labeling patterns of acetyl-CoA proxies, i.e. total acetyl-CoA, the acetyl moiety of citrate, C-1 + 2 of β-hydroxybutyrate, malonyl-CoA, and acetylcarnitine. Additional information was obtained from the labeling patterns of citric acid cycle intermediates and related compounds. The data characterize the partial oxidation of DODA and azelate in peroxisomes, with terminal oxidation in mitochondria. We did not find evidence of peroxisomal oxidation of glutarate. Unexpectedly, DODA contributes a substantial fraction to anaplerosis of the citric acid cycle. This opens the possibility to use water-soluble DODA in nutritional or pharmacological anaplerotic therapy when other anaplerotic substrates are impractical or contraindicated, e.g. in propionic acidemia and methylmalonic acidemia.
- Published
- 2015
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23. The incidence of S. aureus bacteraemia in acute hospitals of the Mid-Western Area, Ireland, 2002-2004
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D Whyte, Barbara Slevin, D Barron, Liz Boyle, R Monahan, R FitzGerald, K Kelleher, and J De Freitas
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Staphylococcus aureus ,medicine.medical_specialty ,Critical Care ,Epidemiology ,Bacteremia ,Bed days ,medicine.disease_cause ,Risk Assessment ,Sensitivity and Specificity ,Antibiotic resistance ,Risk Factors ,Virology ,medicine ,Humans ,Intensive care medicine ,Cross Infection ,business.industry ,Incidence ,Incidence (epidemiology) ,Public health ,Public Health, Environmental and Occupational Health ,Reproducibility of Results ,Staphylococcal Infections ,biochemical phenomena, metabolism, and nutrition ,bacterial infections and mycoses ,medicine.disease ,Methicillin-resistant Staphylococcus aureus ,Hospitalization ,Population Surveillance ,Acute Disease ,Emergency medicine ,Methicillin Resistance ,business ,Ireland - Abstract
Concerns about healthcare-associated infections and the global crisis in antimicrobial resistance has combined to accentuate the fears around so-called "superbugs". In Ireland there is no single agreed indicator regarded as a true measure of the level of methicillin resistant Staphylococcus aureus (MRSA) in hospitals. The objective of this study was to compare two crude measures of MRSA - the percentage of bacteraemia caused by MRSA and the incidence rate (per 1000 bed days used) of MRSA bacteraemia in six acute hospitals. We examined all blood cultures positive for S. aureus (methicillin sensitive and resistant) from 2002 to 2004 in the Health Service Executive (HSE) Mid-Western Area of Ireland. Hospital In-Patient Enquiry (HIPE) data was used to determine monthly in-patient bed days used. Of 245 patient episodes of bacteraemia, 119 were MRSA. The trends in the percentage of isolates that were MRSA and the incidence rate calculated were compared. The incidence rate appears to be a more reliable and robust indicator of MRSA in hospitals than the percentage. Despite many difficulties in interpreting indicators of MRSA they should not preclude the regular publication of data at least at regional level in Ireland.
- Published
- 2017
24. Effects of water-filtered infrared-A and of heat on cell death, inflammation, antioxidative potential and of free radical formation in viable skin – First results
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Katinka Jung, Helmut Piazena, Ralf Uebelhack, Manfred Kietzmann, Werner Müller, Peter J. Meffert, Thomas Herrling, Wolfgang F Pittermann, and Debra K. Kelleher
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Free Radicals ,Convective heat transfer ,Infrared Rays ,Radical ,Biophysics ,Analytical chemistry ,Apoptosis ,Inflammation ,Antioxidants ,Dinoprostone ,chemistry.chemical_compound ,Bromide ,medicine ,Animals ,Radiology, Nuclear Medicine and imaging ,Viability assay ,Prostaglandin E2 ,Free Radical Formation ,Skin ,Formazans ,Radiation ,Radiological and Ultrasound Technology ,Chemistry ,Temperature ,Water ,Cattle ,medicine.symptom ,Ex vivo ,medicine.drug - Abstract
The effects of water-filtered infrared-A (wIRA) and of convective heat on viability, inflammation, inducible free radicals and antioxidative power were investigated in natural and viable skin using the ex vivo Bovine Udder System (BUS) model. Therefore, skin samples from differently treated parts of the udder of a healthy cow were analyzed using the 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) test, by prostaglandin E2 (PGE2) measurement and by electron spin resonance (ESR) spectroscopy. Neither cell viability, the inflammation status, the radical status or the antioxidative defence systems of the skin were significantly affected by wIRA applied within 30 min by using an irradiance of 1900 W m(-2) which is of relevance for clinical use, but which exceeded the maximum solar IR-A irradiance at the Earth's surface more than 5 times and which resulted in a skin surface temperature of about 45 °C without cooling and of about 37 °C with convective cooling by air ventilation. No significant effects on viability and on inflammation were detected when convective heat was applied alone under equivalent conditions in terms of the resulting skin surface temperatures and exposure time. As compared with untreated skin, free radical formation was almost doubled, whereas the antioxidative power was reduced to about 50% after convective heating to about 45 °C.
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- 2014
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25. The Sand Seas of Titan: Cassini RADAR Observations of Longitudinal Dunes
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Howard A. Zebker, L. Roth, Ralph D. Lorenz, Bryan Stiles, Charles Elachi, Y. Anderson, Ellen R. Stofan, Roberto Seu, K. Kelleher, Giovanni Picardi, Gian Gabriele Ori, K. L. Mitchell, E. Reffet, Duane O. Muhleman, Jonathan I. Lunine, Jani Radebaugh, Enrico Flamini, G. Boubin, Yonggyu Gim, Lauren Wye, S. D. Wall, G. Francescetti, Robert West, Matthew A. Allison, S. Vetrella, Rosaly M. C. Lopes, G. Hamilton, Philip S. Callahan, Laurence A. Soderblom, R. Boehmer, S. Shaffer, Steven J. Ostro, Randolph L. Kirk, Pierre Encrenaz, Scott Hensley, M. A. Janssen, Flora Paganelli, William L. Johnson, Francesco Posa, Charles A. Wood, R. D., Lorenz, S., Wall, J., Radebaugh, G., Boubin, E., Reffet, M., Janssen, E., Stofan, R., Lope, R., Kirk, C., Elachi, J., Lunine, K., Mitchell, F., Paganelli, L., Soderblom, C., Wood, L., Wye, H., Zebker, Y., Anderson, S., Ostro, M., Allison, R., Boehmer, P., Callahan, P., Encrenaz, G. G., Ori, Franceschetti, Giorgio, Y., Gim, G., Hamilton, S., Hensley, W., Johnson, K., Kelleher, D., Muhleman, G., Picardi, F., Posa, L., Roth, R., Seu, S., Shaffer, B., Stile, Vetrella, Sergio, E., Flamini, R., West, Lunar and Planetary Laboratory [University of Arizona] (LPL), University of Arizona, Jet Propulsion Laboratory, California Institute of Technology (JPL), Proxemy Research, Bowie, US Geological Survey, Flagstaff, Planetary Science Institute, Tucson, AZ 85719, USA and Wheeling Jesuit College, Wheeling, Stanford University, Goddard Institute for Space Studies, National Aeronautics and Space Administration New York, Observatoire de Paris, Université Paris sciences et lettres (PSL), Laboratoire d'Etude du Rayonnement et de la Matière en Astrophysique (LERMA), École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Observatoire de Paris, Université Paris sciences et lettres (PSL)-Université de Cergy Pontoise (UCP), Université Paris-Seine-Université Paris-Seine-Centre National de la Recherche Scientifique (CNRS), Instrumentation et télédétection, Laboratoire d'Etude du Rayonnement et de la Matière en Astrophysique et Atmosphères = Laboratory for Studies of Radiation and Matter in Astrophysics and Atmospheres (LERMA), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut national des sciences de l'Univers (INSU - CNRS)-Observatoire de Paris, Université Paris sciences et lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-CY Cergy Paris Université (CY)-École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-CY Cergy Paris Université (CY), International Research School of Planetary Sciences, Dipartimento di Scienze, Università d'Annunzio, Facoltá di Ingegneria, Geological and Planetary Sciences, California Institute of Technology, Pasadena, Universitá La Sapienza, Istituto Nazionale per la Fisica della Materia (INFM) and Dip. Interateneo di Fisica, and Agenzia Spaziale Italiana (ASI)
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Geologic Sediments ,Radar ,Multidisciplinary ,Extraterrestrial Environment ,Titan moon ,Wind ,Hydrocarbons ,Radar observations ,Radar imaging ,Wavelength ,symbols.namesake ,Saturn ,Surface winds ,symbols ,Cassini ,Particle Size ,Spacecraft ,[PHYS.ASTR]Physics [physics]/Astrophysics [astro-ph] ,Titan (rocket family) ,Methane ,Geomorphology ,Geology ,Remote sensing - Abstract
The most recent Cassini RADAR images of Titan show widespread regions (up to 1500 kilometers by 200 kilometers) of near-parallel radar-dark linear features that appear to be seas of longitudinal dunes similar to those seen in the Namib desert on Earth. The Ku-band (2.17-centimeter wavelength) images show approximately 100-meter ridges consistent with duneforms and reveal flow interactions with underlying hills. The distribution and orientation of the dunes support a model of fluctuating surface winds of approximately 0.5 meter per second resulting from the combination of an eastward flow with a variable tidal wind. The existence of dunes also requires geological processes that create sand-sized (100- to 300-micrometer) particulates and a lack of persistent equatorial surface liquids to act as sand traps.
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- 2006
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26. Biomechanical Research on Bowed String Musicians: A Scoping Study
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James P. Dickey, Leila K. Kelleher, and Kody R. Campbell
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Violin ,Engineering ,Communication ,Data collection ,History and Philosophy of Science ,business.industry ,String (computer science) ,Applied psychology ,Related research ,General Medicine ,Scoping study ,State of the science ,business - Abstract
Performing arts biomechanics is concerned with quantifying the musculoskeletal demands of artistic tasks. The growing body of related research has prompted this scoping study, solely focused on quantitative research, to summarize the state of the science, identify knowledge gaps, and identify opportunities for future research. OBJECTIVES: To identify, summarize, and categorize quantitative research on the biomechanics of violin, viola, cello, and double bass players, using scoping study methodology. METHODS: Established scoping study methodology was used to identify and categorize existing research. We identified 74 articles for review. Of these, 34 met our scoping study criteria and were included in this study. RESULTS: Twenty-one of the 34 articles that met the scoping criteria were published since 2000. Investigations using electromyography (16 studies) and kinematics (15 studies) comprise the bulk of the research. Two studies employed force transducers for data collection. Violinists were the most frequently studied musicians (22 studies) and double bass players were the least (1 study). Fewer than half of the studies used solely professional musicians as their subjects (13 studies). CONCLUSIONS: This scoping study confirmed that quantitative biomechanical research into bowed string musicians has been performed with increasing frequency and that there are voids in the research, particularly in investigating mechanisms of injury and protective strategies. Currently, arts biomechanics research is largely descriptive in nature. There are few studies that investigate protective strategies, although it is expected that the field will progress to incorporate this type of research.
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- 2013
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27. Saturn’s thermal emission at 2.2-cm wavelength as imaged by the Cassini RADAR radiometer
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Michael Allison, Kevin H. Baines, Andrew P. Ingersoll, K. Kelleher, Y. Anderson, A. L. Laraia, Fabiano Oyafuso, Samuel Gulkis, Scott Edgington, and M. A. Janssen
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Physics ,Radiometer ,Atmospheric models ,Astronomy ,Astronomy and Astrophysics ,Latitude ,Atmosphere ,Wavelength ,Space and Planetary Science ,Brightness temperature ,Saturn ,Physics::Space Physics ,Radiative transfer ,Astrophysics::Earth and Planetary Astrophysics ,Physics::Atmospheric and Oceanic Physics ,Astrophysics::Galaxy Astrophysics - Abstract
We present well-calibrated, high-resolution maps of Saturn’s thermal emission at 2.2-cm wavelength obtained by the Cassini RADAR radiometer through the Prime and Equinox Cassini missions, a period covering approximately 6 years. The absolute brightness temperature calibration of 2% achieved is more than twice better than for all previous microwave observations reported for Saturn, and the spatial resolution and sensitivity achieved each represent nearly an order of magnitude improvement. The brightness temperature of Saturn in the microwave region depends on the distribution of ammonia, which our radiative transfer modeling shows is the only significant source of absorption in Saturn’s atmosphere at 2.2-cm wavelength. At this wavelength the thermal emission comes from just below and within the ammonia cloud-forming region, and yields information about atmospheric circulations and ammonia cloud-forming processes. The maps are presented as residuals compared to a fully saturated model atmosphere in hydrostatic equilibrium. Bright regions in these maps are readily interpreted as due to depletion of ammonia vapor in, and, for very bright regions, below the ammonia saturation region. Features seen include the following: a narrow equatorial band near full saturation surrounded by bands out to about 10° planetographic latitude that demonstrate highly variable ammonia depletion in longitude; narrow bands of depletion at −35° latitude; occasional large oval features with depleted ammonia around −45° latitude; and the 2010–2011 storm, with extensive saturated and depleted areas as it stretched halfway around the planet in the northern hemisphere. Comparison of the maps over time indicates a high degree of stability outside a few latitudes that contain active regions.
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- 2013
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28. Cofactor Balance by Nicotinamide Nucleotide Transhydrogenase (NNT) Coordinates Reductive Carboxylation and Glucose Catabolism in the Tricarboxylic Acid (TCA) Cycle
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Joanne K. Kelleher, Paulo A. Gameiro, Laura A. Laviolette, Gregory Stephanopoulos, and Othon Iliopoulos
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Citric Acid Cycle ,Mice, Nude ,Mitochondrion ,Biochemistry ,NADP Transhydrogenase, AB-Specific ,Cofactor ,Cell Line ,Mitochondrial Proteins ,Mice ,health services administration ,Animals ,Molecular Biology ,chemistry.chemical_classification ,biology ,Cell Biology ,Tricarboxylic acid ,NAD ,Pyruvate carboxylase ,Citric acid cycle ,Glutamine ,Glucose ,Metabolism ,Isocitrate dehydrogenase ,chemistry ,Gene Knockdown Techniques ,biology.protein ,NAD+ kinase ,Oxidation-Reduction ,NADP - Abstract
Cancer and proliferating cells exhibit an increased demand for glutamine-derived carbons to support anabolic processes. In addition, reductive carboxylation of α-ketoglutarate by isocitrate dehydrogenase 1 (IDH1) and 2 (IDH2) was recently shown to be a major source of citrate synthesis from glutamine. The role of NAD(P)H/NAD(P)(+) cofactors in coordinating glucose and glutamine utilization in the tricarboxylic acid (TCA) cycle is not well understood, with the source(s) of NADPH for the reductive carboxylation reaction remaining unexplored. Nicotinamide nucleotide transhydrogenase (NNT) is a mitochondrial enzyme that transfers reducing equivalents from NADH to NADPH. Here, we show that knockdown of NNT inhibits the contribution of glutamine to the TCA cycle and activates glucose catabolism in SkMel5 melanoma cells. The increase in glucose oxidation partially occurred through pyruvate carboxylase and rendered NNT knockdown cells more sensitive to glucose deprivation. Importantly, knocking down NNT inhibits reductive carboxylation in SkMel5 and 786-O renal carcinoma cells. Overexpression of NNT is sufficient to stimulate glutamine oxidation and reductive carboxylation, whereas it inhibits glucose catabolism in the TCA cycle. These observations are supported by an impairment of the NAD(P)H/NAD(P)(+) ratios. Our findings underscore the role of NNT in regulating central carbon metabolism via redox balance, calling for other mechanisms that coordinate substrate preference to maintain a functional TCA cycle.
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- 2013
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29. Radiolabelling and preliminary evaluation of 68Ga-tetrapyrrole derivatives as potential tracers for PET
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Elisabeth Eppard, Frederic Zoller, Frank Rösch, Franz-Peter Montforts, Patrick J. Riss, and Debra K. Kelleher
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Male ,Cancer Research ,medicine.medical_treatment ,Gallium Radioisotopes ,Photodynamic therapy ,Endocytosis ,chemistry.chemical_compound ,Drug Stability ,Radioligand ,medicine ,Animals ,Humans ,Radiology, Nuclear Medicine and imaging ,Radiochemistry ,medicine.diagnostic_test ,Blood Proteins ,Porphyrin ,Tetrapyrrole ,In vitro ,Rats ,Tetrapyrroles ,chemistry ,Biochemistry ,Positron emission tomography ,Isotope Labeling ,Positron-Emission Tomography ,Molecular Medicine ,Radionuclide Generator - Abstract
article i nfo Tetrapyrroles are multisided natural products which are of relevance in clinical medicine. Owing to their specific accumulation in tumour tissue, porphyrins, metalloporphyrins and chlorins have been used as in photodynamic therapy and optical imaging. Moreover, their specific uptake into inflammatory atheromatous plaques via LDL endocytosis has been reported. The present study is concerned with the synthesis of 68 Ga labelled porphyrin derivatives and an in vitro assessment of the utility of radiotracers in positron emission tomography. A set of five porphyrin derivatives were labelled using 68 Ga from a commercially obtained radionuclide generator. Dedicated post-processing of the generator eluate was conducted to allow for labelling in aqueous media and also under anhydrous conditions. Challenge studies and incubation in human serum confirmed the stability of the tracers. Plasma protein binding was investigated in order to confirm the presence of freely diffusible radioligand in plasma. A preliminary microPET study in a tumour-bearing rat resulted in a clear visualisation of the tumour.
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- 2013
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30. Metabolic requirements for cancer cell proliferation
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Joanne K. Kelleher, Thomas M. Wasylenko, Mark A. Keibler, Gregory Stephanopoulos, Matthew G. Vander Heiden, Othon Iliopoulos, Massachusetts Institute of Technology. Department of Biology, Massachusetts Institute of Technology. Department of Chemical Engineering, Koch Institute for Integrative Cancer Research at MIT, Keibler, Mark Andrew, Wasylenko, Thomas Michael, Kelleher, Joanne K, Vander Heiden, Matthew G., and Stephanopoulos, Gregory
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0301 basic medicine ,Anabolism ,Research ,Proliferation ,Biology ,Biosynthesis ,Cancer metabolism ,3. Good health ,Flux balance analysis ,Cell biology ,Stoichiometric analysis ,Metabolic modeling ,Serine ,03 medical and health sciences ,Psychiatry and Mental health ,chemistry.chemical_compound ,Metabolic pathway ,030104 developmental biology ,Isocitrate dehydrogenase ,chemistry ,Biochemistry ,NAD+ kinase ,Flux (metabolism) - Abstract
Background: The study of cancer metabolism has been largely dedicated to exploring the hypothesis that oncogenic transformation rewires cellular metabolism to sustain elevated rates of growth and division. Intense examination of tumors and cancer cell lines has confirmed that many cancer-associated metabolic phenotypes allow robust growth and survival; however, little attention has been given to explicitly identifying the biochemical requirements for cell proliferation in a rigorous manner in the context of cancer metabolism. Results: Using a well-studied hybridoma line as a model, we comprehensively and quantitatively enumerate the metabolic requirements for generating new biomass in mammalian cells; this indicated a large biosynthetic requirement for ATP, NADPH, NAD+, acetyl-CoA, and amino acids. Extension of this approach to serine/glycine and glutamine metabolic pathways suggested lower limits on serine and glycine catabolism to supply one-carbon unit synthesis and significant availability of glutamine-derived carbon for biosynthesis resulting from nitrogen demands alone, respectively. We integrated our biomass composition results into a flux balance analysis model, placing upper bounds on mitochondrial NADH oxidation to simulate metformin treatment; these simulations reproduced several empirically observed metabolic phenotypes, including increased reductive isocitrate dehydrogenase flux. Conclusions: Our analysis clarifies the differential needs for central carbon metabolism precursors, glutamine-derived nitrogen, and cofactors such as ATP, NADPH, and NAD+, while also providing justification for various extracellular nutrient uptake behaviors observed in tumors. Collectively, these results demonstrate how stoichiometric considerations alone can successfully predict empirically observed phenotypes and provide insight into biochemical dynamics that underlie responses to metabolic perturbations., National Institutes of Health (U.S.) (Grant 1R01DK075850-01), National Institutes of Health (U.S.) (Grant 1R01CA160458-01A1)
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- 2016
31. Blood-borne virus transmission in healthcare settings in Ireland: review of patient notification exercises 1997–2011
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K. Kelleher, L. Thornton, and S. Donohue
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Microbiology (medical) ,medicine.medical_specialty ,HIV Infections ,Infectious Disease Transmission, Professional-to-Patient ,Health services ,Documentation ,Surveys and Questionnaires ,Health care ,Blood-Borne Pathogens ,Humans ,Medicine ,Disease Notification ,Cross Infection ,business.industry ,Transmission (medicine) ,General Medicine ,Blood borne virus ,Hepatitis B ,Hepatitis C ,Infectious Diseases ,Key informants ,Family medicine ,Healthcare settings ,Structured interview ,Physical therapy ,business ,Ireland - Abstract
A review of patient notification exercises (PNEs) carried out in Ireland between 1997 and 2011 to investigate potential exposure to blood-borne viruses (BBVs) in healthcare settings was undertaken to inform future policy and practice. A questionnaire was sent to key informants in the health services to identify all relevant PNEs. Structured interviews were conducted with key investigators, and available documentation was examined. Ten BBV-related PNEs were identified. Despite testing over 2000 patients, only one case of transmission was found. However, in-depth local investigations before undertaking the PNEs identified six cases of healthcare-associated transmission.
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- 2012
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32. ENETS Newsletter Summer/Fall 2011
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Yukinori Kato, Michela Tessari, Maria Florencia Gallelli, Elena Gonzalez-Rey, Eduardo Arzt, Yoshiko Kuroda, Sonoko Ogawa, Kazuyo Nagata, Maria Fernanda Cabrera-Blatter, Sergio Melotto, Tanja Wolloscheck, Mariko Nakata, Mariana Haedo, Emilio Merlo Pich, Debra K. Kelleher, Marta Soaje, Katsumi Toda, Marta Labeur, Johanna Stalla, Mumeko C. Tsuda, Marily Theodoropoulou, Isabella Spiwoks-Becker, Marta Caro, Mauro Corsi, Fiorella Campo Verde Arboccó, Vivian J A Costantini, Druck Reinhardt Druck Basel, Günter K. Stalla, Rainer Spessert, Herbert A. Schmid, Satz Mengensatzproduktion, Sandrine M. Dupre, Gisela E. Pennacchio, Matteo Sartori, Francesca Michielin, Enzo Valerio, Fabio Maria Sabbatini, Ryohei Kurihara, Melisa M. Bonafede, Luciana Souza-Moreira, Víctor Castillo, Veronika Weyer, Nils H. Rohleder, Shinji Tsukahara, Stefano Lepore, Elena Vicentini, Oliver Rickes, Kai Xiao, Graciela A. Jahn, Susana R. Valdez, and Jenny Campos-Salinas
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Cellular and Molecular Neuroscience ,medicine.medical_specialty ,Endocrinology ,Endocrine and Autonomic Systems ,Endocrinology, Diabetes and Metabolism ,Internal medicine ,medicine ,Psychology - Published
- 2011
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33. Dewatering Characteristics of Cambi Thermal Hydrolysis Biosolids: Centrifuges vs. BFPs
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K. Kelleher, Sudhir Murthy, John Machisko, Matthew J. Higgins, Alan Cooper, Ersin Kasirga, Paul Fountain, Kean Lee, and Perry Schafer
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Biosolids ,Chemistry ,General Engineering ,Thermal hydrolysis ,Pulp and paper industry ,Dewatering - Published
- 2011
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34. An assessment of aquatic radiation pathways in Ireland
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O. Hanley, L. McKittrick, F. Clyne, K. Kelleher, L. Currivan, and D. Pollard
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education.field_of_study ,Renewable Energy, Sustainability and the Environment ,Health, Toxicology and Mutagenesis ,media_common.quotation_subject ,Population ,Public Health, Environmental and Occupational Health ,Irish sea ,Radiation exposure ,Geography ,Nuclear Energy and Engineering ,Environmental health ,Dose assessment ,Habit ,National average ,Safety, Risk, Reliability and Quality ,education ,Waste Management and Disposal ,media_common - Abstract
Members of the public are exposed to radiation because of where they live and their habits bring them into contact with sources of radiation. They may be exposed directly by the source, by direct irradiation or inhalation of released activity or indirectly by exposure to contaminated environmental materials such as food. Consequently habit data are an essential part of dose assessment for members of the public [1]. Previously no detailed surveys had been undertaken in Ireland of habit data relevant to the assessment of doses to the population from radioactivity in the marine environment. Instead RPII dose assessments were made on the basis of assumed or notional data inferred from habit surveys undertaken elsewhere and from national average consumption figures. Following a tender process the Centre for Environment, Fisheries & Aquaculture Science, Cefas, UK, were commissioned to undertake a Habits Survey. Its report [2] provides an assessment of aquatic radiation exposure pathways in Ireland relating to anthropogenic radioactivity in the Irish Sea.
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- 2011
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35. Nontargeted Elucidation of Metabolic Pathways Using Stable-Isotope Tracers and Mass Spectrometry
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Joanne K. Kelleher, Karsten Hiller, Christian M. Metallo, and Gregory Stephanopoulos
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Chromatography ,Stable isotope ratio ,Glutamine ,Metabolite ,Combined use ,Computational biology ,Mass spectrometry ,Gas Chromatography-Mass Spectrometry ,Analytical Chemistry ,chemistry.chemical_compound ,Metabolic pathway ,Metabolomics ,chemistry ,Cell Line, Tumor ,Isotope Labeling ,Metabolic flux analysis ,Humans ,Quantitative analysis (chemistry) ,Algorithms ,Metabolic Networks and Pathways - Abstract
Systems level tools for the quantitative analysis of metabolic networks are required to engineer metabolism for biomedical and industrial applications. While current metabolomics techniques enable high-throughput quantification of metabolites, these methods provide minimal information on the rates and connectivity of metabolic pathways. Here we present a new method, nontargeted tracer fate detection (NTFD), that expands upon the concept of metabolomics to solve the above problems. Through the combined use of stable isotope tracers and chromatography coupled to mass spectrometry, our computational analysis enables the quantitative detection of all measurable metabolites derived from a specific labeled compound. Without a priori knowledge of a reaction network or compound library, NTFD provides information about relative flux magnitudes into each metabolite pool by determining the mass isotopomer distribution for all labeled compounds. This novel method adds a new dimension to the metabolomics tool box and provides a framework for global analysis of metabolic fluxes.
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- 2010
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36. New Cassini RADAR results for Saturn’s icy satellites
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Howard A. Zebker, Steven J. Ostro, Philip S. Callahan, Richard West, Bryan Stiles, Ralph D. Lorenz, C. Veeramachaneni, M. A. Janssen, G. Hamilton, K. Kelleher, William T. K. Johnson, Y. Anderson, Yonggyu Gim, Lauren Wye, and R. Boehmer
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Solar System ,Meteoroid ,Space and Planetary Science ,Asteroid ,Saturn ,Astronomy ,Asteroid belt ,Astronomy and Astrophysics ,Albedo ,Enceladus ,Regolith ,Geology - Abstract
Cassini radar tracks on Saturn’s icy satellites through the end of the Prime Mission in 2008 have increased the number of radar albedo estimates from 10 ( Ostro et al., 2006 ) to 73. The measurements sample diverse subradar locations (and for Dione, Rhea, and Iapetus almost always use beamwidths less than half the target angular diameters), thereby constraining the satellites’ global radar albedo distributions. The echoes result predominantly from volume scattering, and their strength is thus strongly sensitive to ice purity and regolith maturity. The combination of the Cassini data set and Arecibo 13-cm observations of Enceladus, Tethys, Dione, Rhea ( Black et al., 2007 ), and Iapetus ( Black et al., 2004 ) discloses an unexpectedly complex pattern of 13-to-2-cm wavelength dependence. The 13-cm albedos are generally smaller than 2-cm albedos and lack the correlation seen between 2-cm and optical geometric albedos. Enceladus and Iapetus are the most interesting cases. We infer from hemispheric albedo variations that the E-ring has a prominent effect on the 13-cm radar “lightcurve”. The uppermost trailing-side regolith is too fresh for meteoroid bombardment to have developed larger-scale heterogeneities that would be necessary to elevate the 13-cm radar albedo, whereas all of Enceladus is clean and mature enough for the 2-cm albedo to be uniformly high. For, Iapetus, the 2-cm albedo is strongly correlated with optical albedo: low for the optically dark, leading-side material and high for the optically bright, trailing-side material. However, Iapetus’ 13-cm albedo values show no significant albedo dichotomy and are several times lower than 2-cm values, being indistinguishable from the weighted mean of 13-cm albedos for main-belt asteroids, 0.15 ± 0.10. The leading side’s optically dark contaminant must be present to depths of at least one to several decimeters, so 2-cm albedos can mimic the optical dichotomy; however, it does not have to extend any deeper than that. The fact that both hemispheres of Iapetus look Asteroid-like at 13 cm means that coherent backscattering itself is not nearly as effective as it is at 2 cm. Since Iapetus’ entire surface is mature regolith, the wavelength dependence must involve composition, not structure. Either the composition is a function of depth everywhere (with electrical loss much greater at depths greater than a decimeter or two), or the intrinsic electrical loss of some pervasive constituent is much higher at 13 cm than at 2 cm. Ammonia is a candidate for such a contaminant. If ammonia’s electrical properties do not depend on frequency, and if ammonia is globally much less abundant within the upper one or two decimeters than at greater depths, then coherent backscattering would effectively be shut down at 13 cm, explaining the Asteroid-like 13-cm albedo.
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- 2010
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37. Effects of Infrared-A Irradiation on Skin: Discrepancies in Published Data Highlight the Need for an Exact Consideration of Physical and Photobiological Laws and Appropriate Experimental Settings
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Helmut Piazena and Debra K. Kelleher
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Acute effects ,Metabolic energy ,Infrared Rays ,Infrared ,Chemistry ,Skin exposure ,Heat pain ,General Medicine ,Models, Theoretical ,Radiation ,Models, Biological ,Biochemistry ,Biophysical Phenomena ,Photobiology ,Law ,Tissue damage ,Humans ,Irradiation ,Physical and Theoretical Chemistry ,Skin - Abstract
Skin exposure to infrared (IR) radiation should be limited in terms of irradiance, exposure time and frequency in order to avoid acute or chronic damage. Recommendations aimed at protecting humans from the risks of skin exposure to IR (e.g. ICNIRP, ACGIH) are only defined in terms of acute effects (e.g. heat pain and cardiovascular collapse), whereas the actual exposure conditions (e.g. spectral distribution, exposure geometry, frequency and number of exposures, thermal exchange with the environment, metabolic energy production and regulatory responses) are not taken into consideration. Since the IR component of solar radiation reaching the Earth's surface is mainly IR-A, and considering the increased use of devices emitting artificially generated IR-A radiation, this radiation band is of special interest. A number of in vitro and/or in vivo investigations assessing cellular or tissue damage caused by IR-A radiation have been undertaken. While such studies are necessary for the development of safety recommendations, the results of measurements undertaken to examine the interaction between skin and IR radiation emitted from different sources presented in this study, together with the detailed examination of the literature reveals a wide spectrum of contradictory findings, which in some instances may be related to methodological shortcomings or fundamental errors in the application of physical and photobiological laws, thus highlighting the need for physically and photobiologically appropriate experiments.
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- 2010
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38. Pathophysiological and vascular characteristics of tumours and their importance for hyperthermia: Heterogeneity is the key issue
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Debra K. Kelleher and Peter Vaupel
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Hyperthermia ,Cancer Research ,Pathology ,medicine.medical_specialty ,Fever ,Physiology ,Microcirculation ,Hyperthermia Treatment ,Blood flow ,Oxygenation ,Hypoxia (medical) ,Biology ,medicine.disease ,Oxygen Consumption ,Neoplasms ,Physiology (medical) ,Internal medicine ,Hemorheology ,medicine ,Cardiology ,Humans ,medicine.symptom ,Acidosis - Abstract
Tumour blood flow before and during clinically relevant mild hyperthermia exhibits pronounced heterogeneity. Flow changes upon heating are not predictable and are both spatially and temporally highly variable. Flow increases may result in improved heat dissipation to the extent that therapeutically relevant tissue temperatures may not be achieved. This holds especially true for tumours or tumour regions in which flow rates are substantially higher than in the surrounding normal tissues. Changes in tumour oxygenation tend to reflect alterations in blood flow upon hyperthermia. An initial improvement in the oxygenation status, followed by a return to baseline levels (or even a drop to below baseline at high thermal doses) has been reported for some tumours, whereas a predictable and universal occurrence of sustained increases in O(2) tensions upon mild hyperthermia is questionable and still needs to be verified in the clinical setting. Clarification of the pathogenetic mechanisms behind possible sustained increases is mandatory. High-dose hyperthermia leads to a decrease in the extracellular and intracellular pH and a deterioration of the energy status, both of which are known to be parameters capable of acting as direct sensitisers and thus pivotal factors in hyperthermia treatment. The role of the tumour microcirculatory function, hypoxia, acidosis and energy status is complex and is further complicated by a pronounced heterogeneity. These latter aspects require additional critical evaluation in clinically relevant tumour models in order for their impact on the response to heat to be clarified.
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- 2010
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39. Effect of Anaplerotic Fluxes and Amino Acid Availability on Hepatic Lipoapoptosis
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Michael Adsetts Edberg Hansen, Yasushi Noguchi, Jamey D. Young, Gregory Stephanopoulos, Joanne K. Kelleher, and Jose O. Aleman
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Ceramide ,Glutamine ,Palmitates ,Apoptosis ,Fatty Acids, Nonesterified ,Biology ,Ceramides ,Biochemistry ,Gas Chromatography-Mass Spectrometry ,chemistry.chemical_compound ,Cytosol ,Cell Line, Tumor ,Lactate dehydrogenase ,Animals ,Humans ,Glycolysis ,Amino Acids ,Molecular Biology ,Essential amino acid ,chemistry.chemical_classification ,Dose-Response Relationship, Drug ,L-Lactate Dehydrogenase ,Cell Biology ,Rats ,Amino acid ,Citric acid cycle ,Metabolism and Bioenergetics ,Metabolic pathway ,Liver ,chemistry ,Reactive Oxygen Species ,Oxidation-Reduction ,Oleic Acid - Abstract
To identify metabolic pathways involved in hepatic lipoapoptosis, metabolic flux analysis using [U-(13)C(5)]glutamine as an isotopic tracer was applied to quantify phenotypic changes in H4IIEC3 hepatoma cells treated with either palmitate alone (PA-cells) or both palmitate and oleate in combination (PA/OA-cells). Our results indicate that palmitate inhibited glycolysis and lactate dehydrogenase fluxes while activating citric acid cycle (CAC) flux and glutamine uptake. This decoupling of glycolysis and CAC fluxes occurred during the period following palmitate exposure but preceding the onset of apoptosis. Oleate co-treatment restored most fluxes to their control levels, resulting in steatotic lipid accumulation while preventing apoptosis. In addition, palmitate strongly increased the cytosolic NAD(+)/NADH ratio, whereas oleate co-treatment had the opposite effect on cellular redox. We next examined the influence of amino acids on these free fatty acid-induced phenotypic changes. Increased medium amino acids enhanced reactive oxygen species (ROS) generation and apoptosis in PA-cells but not in PA/OA-cells. Overloading the medium with non-essential amino acids induced apoptosis, but essential amino acid overloading partially ameliorated apoptosis. Glutamate was the most effective single amino acid in promoting ROS. Amino acid overloading also increased cellular palmitoyl-ceramide; however, ceramide synthesis inhibitors had no effect on measurable indicators of apoptosis. Our results indicate that free fatty acid-induced ROS generation and apoptosis are accompanied by the decoupling of glycolysis and CAC fluxes leading to abnormal cytosolic redox states. Amino acids play a modulatory role in these processes via a mechanism that does not involve ceramide accumulation.
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- 2009
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40. Titan's surface at 2.2-cm wavelength imaged by the Cassini RADAR radiometer: Calibration and first results
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Yonggyu Gim, Ralph D. Lorenz, Charles Elachi, R. L. Kirk, Robert West, William T. K. Johnson, A. Le Gall, R. Boehmer, Philip S. Callahan, L. Roth, M. A. Janssen, Y. Anderson, Rosaly M. C. Lopes, Flora Paganelli, S. D. Wall, Bryan Stiles, G. Hamilton, and K. Kelleher
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Physics ,Radiometer ,business.industry ,Polarimetry ,Astronomy and Astrophysics ,law.invention ,symbols.namesake ,Optics ,Space and Planetary Science ,law ,Brightness temperature ,Emissivity ,symbols ,Radiometry ,Surface layer ,Radar ,business ,Titan (rocket family) ,Remote sensing - Abstract
The first comprehensive calibration and mapping of the thermal microwave emission from Titan's surface is reported based on radiometric data obtained at 2.2-cm wavelength by the passive radiometer included in the Cassini Radar instrument. The data reported were accumulated from 69 separate observational segments in Titan passes from Ta (October 2004) through T30 (May 2007) and include emission from 94% of Titan's surface. They are diverse in the key observing parameters of emission angle, polarization, and spatial resolution, and their reduction into calibrated global mosaic maps involved several steps. Analysis of the polarimetry obtained at low to moderate resolution (50+ km) enabled integration of the radiometry into a single mosaic of the equivalent brightness temperature at normal incidence with a relative precision of about 1 K. The Huygens probe measurement of Titan's surface temperature and radiometry obtained on Titan's dune fields allowed us to infer an absolute calibration estimated to be accurate to a level approaching 1 K. The results provide evidence for a surface that is complex and varied on large scales. The radiometry primarily constrains physical properties of the surface, where we see strong evidence for subsurface (volume) scattering as a dominant mechanism that determines the emissivity, with the possibility of a fluffy or graded-density surface layer in many regions. The results are consistent with, but not necessarily definitive of a surface composition resulting from the slow deposition and processing of organic compounds from the atmosphere.
- Published
- 2009
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41. Identification and assessment of elevated exposure to natural radiation in Balkan region (Serbia)
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Ilia V. Yarmoshenko, Michael Zhukovsky, Giancarlo Ciotoli, Kenzo Fujimoto, Igor T. Čeliković, F. Trotti, Jerzy W. Mietelski, Maciej Budzanowski, Predrag Ujić, Hans Vanmarcke, Francesco Bochicchio, Krzysztof Kozak, S.E. Simopoulos, J. P. Mc Laughlin, Pawel Olko, N. Veselinović, K. Kelleher, Sarata Kumar Sahoo, Shinji Tokonami, A. Birovljev, B. Jakupi, Michael P. R. Waligórski, Johan Paridaens, Zora S. Žunić, R. C. Ramola, and Gordana Milic
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education.field_of_study ,Renewable Energy, Sustainability and the Environment ,Health, Toxicology and Mutagenesis ,Population ,Public Health, Environmental and Occupational Health ,Natural (archaeology) ,Toxicology ,Geography ,Nuclear Energy and Engineering ,Identification (biology) ,Population exposure ,Safety, Risk, Reliability and Quality ,Montenegro ,education ,Waste Management and Disposal ,Environmental planning ,Natural radioactivity - Abstract
The paper deals with a specific aspect of a general survey, that is being carried out during last ten years in several regions of Serbia (former Yugoslavia, former Serbia and Montenegro) to assess population exposure to natural radioactivity based on geochemical and integrative pattern research approach. The originality regarding this work is related to the facts such as follows: the first identification and assessment of high areas of natural radiation in Serbia which provides insight into its regional characteristics, the interpretation of the results in terms of geological aspects, building types and human habits, the first introduction and field applicability of both (surface and volume trap) retro techniques in Serbia and assessment of doses and risks to the population in investigated high natural radiation rural communities.
- Published
- 2009
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42. A comparison of retrospective radon gas measurement techniques carried out in the Serbian spa of Niška Banja
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Igor T. Čeliković, P James Mclaughlin, Olivera Cuknic, Jugoslav Nikolic, Rodoljub Simovic, Predrag Ujić, S Zora Zunic, Johan Paridaens, Gordana Milic, and K. Kelleher
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surface trap ,chemistry.chemical_element ,Radon ,010501 environmental sciences ,01 natural sciences ,030218 nuclear medicine & medical imaging ,Radium ,03 medical and health sciences ,volume trap ,0302 clinical medicine ,retrospective measurement ,lcsh:Nuclear and particle physics. Atomic energy. Radioactivity ,Safety, Risk, Reliability and Quality ,Field campaign ,0105 earth and related environmental sciences ,Hydrology ,Measurement method ,business.industry ,Radon gas ,Trap (plumbing) ,Nuclear Energy and Engineering ,chemistry ,Radon Progeny ,Environmental science ,indoor radon ,lcsh:QC770-798 ,Surface trap ,Nuclear medicine ,business - Abstract
Indoor radon retrospective concentrations were obtained and compared using two radon measurement methods. Both methods rely on the measurement of the long-lived radon progeny 210Pb, collected either on the surfaces (surface trap technique), most frequently glass, or in a volume trap, usually sponge from furniture (volume trap technique). These techniques have been used to retrospectively estimate radon gas concentrations that have existed in dwellings in the past. The work presented here compares the results provided by the surface trap technique devised at the University College of Dublin, Ireland, and the volume trap technique devised at the Scientific Research Center, Mol, Belgium. The field campaign was carried out by the research team of the ECE Laboratory of the Vinca Institute of Nuclear Sciences at the spa of Niska Banja, identified as a region of Serbia with a high indoor radon and ground water radium and radon content.
- Published
- 2009
43. Metabolomic and Mass Isotopomer Analysis of Liver Gluconeogenesis and Citric Acid Cycle
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Lili Yang, Takhar Kasumov, Rajan S. Kombu, Shu-Han Zhu, Andrea V. Cendrowski, France David, Vernon E. Anderson, Joanne K. Kelleher, and Henri Brunengraber
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medicine.medical_specialty ,Metabolite ,Biology ,Biochemistry ,Redox ,chemistry.chemical_compound ,Glyceraldehyde ,Internal medicine ,medicine ,Citrate synthase ,Molecular Biology ,Dihydroxyacetone phosphate ,Cell Biology ,Aminooxyacetic acid ,Lactic acid ,Citric acid cycle ,Isocitrate dehydrogenase ,Endocrinology ,chemistry ,Gluconeogenesis ,biology.protein ,Pyruvic acid ,Efflux ,Phosphoenolpyruvate carboxykinase ,Citric acid - Abstract
In this second of two companion articles, we compare the mass isotopomer distribution of metabolites of liver gluconeogenesis and citric acid cycle labeled from NaH(13)CO(3) or dimethyl [1,4-(13)C(2)]succinate. The mass isotopomer distribution of intermediates reveals the reversibility of the isocitrate dehydrogenase + aconitase reactions, even in the absence of a source of alpha-ketoglutarate. In addition, in many cases, a number of labeling incompatibilities were found as follows: (i) glucose versus triose phosphates and phosphoenolpyruvate; (ii) differences in the labeling ratios C-4/C-3 of glucose versus (glyceraldehyde 3-phosphate)/(dihydroxyacetone phosphate); and (iii) labeling of citric acid cycle intermediates in tissue versus effluent perfusate. Overall, our data show that gluconeogenic and citric acid cycle intermediates cannot be considered as sets of homogeneously labeled pools. This probably results from the zonation of hepatic metabolism and, in some cases, from differences in the labeling pattern of mitochondrial versus extramitochondrial metabolites. Our data have implications for the use of labeling patterns for the calculation of metabolic rates or fractional syntheses in liver, as well as for modeling liver intermediary metabolism.
- Published
- 2008
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44. Quantifying Reductive Carboxylation Flux of Glutamine to Lipid in a Brown Adipocyte Cell Line
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Maciek R. Antoniewicz, Gregory Stephanopoulos, Hyuntae Yoo, and Joanne K. Kelleher
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Glutamine ,Citric Acid Cycle ,Carboxylic Acids ,Biology ,Mitochondrion ,Biochemistry ,Cell Line ,Mice ,chemistry.chemical_compound ,Acetyl Coenzyme A ,Animals ,Inner mitochondrial membrane ,Molecular Biology ,Fatty acid synthesis ,Oxalates ,Glutaminolysis ,Fatty Acids ,Cell Differentiation ,Cell Biology ,Lipids ,Isocitrate Dehydrogenase ,Mitochondria ,Citric acid cycle ,Metabolism and Bioenergetics ,Adipocytes, Brown ,Isocitrate dehydrogenase ,chemistry ,Ketoglutaric Acids ,NAD+ kinase - Abstract
We previously reported that glutamine was a major source of carbon for de novo fatty acid synthesis in a brown adipocyte cell line. The pathway for fatty acid synthesis from glutamine may follow either of two distinct pathways after it enters the citric acid cycle. The glutaminolysis pathway follows the citric acid cycle, whereas the reductive carboxylation pathway travels in reverse of the citric acid cycle from α-ketoglutarate to citrate. To quantify fluxes in these pathways we incubated brown adipocyte cells in [U-13C]glutamine or [5-13C]glutamine and analyzed the mass isotopomer distribution of key metabolites using models that fit the isotopomer distribution to fluxes. We also investigated inhibitors of NADP-dependent isocitrate dehydrogenase and mitochondrial citrate export. The results indicated that one third of glutamine entering the citric acid cycle travels to citrate via reductive carboxylation while the remainder is oxidized through succinate. The reductive carboxylation flux accounted for 90% of all flux of glutamine to lipid. The inhibitor studies were compatible with reductive carboxylation flux through mitochondrial isocitrate dehydrogenase. Total cell citrate and α-ketoglutarate were near isotopic equilibrium as expected if rapid cycling exists between these compounds involving the mitochondrial membrane NAD/NADP transhydrogenase. Taken together, these studies demonstrate a new role for glutamine as a lipogenic precursor and propose an alternative to the glutaminolysis pathway where flux of glutamine to lipogenic acetyl-CoA occurs via reductive carboxylation. These findings were enabled by a new modeling tool and software implementation (Metran) for global flux estimation.
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- 2008
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45. IDENTIFICATION OF POTENT CYCLIC PEPTIDES THAT BIND TO PLATELET GLYCOPROTEIN IB ALPHA AND SELECTIVELY INHIBIT VON WILLEBRAND FACTOR DEPENDENT HIGH-SHEAR PLATELET AGGREGATION
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K. Kelleher, T. DeSilva, K. Cunningham, D. Tsao, Robert G. Schaub, J. Jacob, T. M. Smith, R. Kriz, S. Benard, L. Carter, L. Lin, and G. Shaw
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chemistry.chemical_classification ,Shear (sheet metal) ,Von Willebrand factor ,biology ,Platelet aggregation ,Chemistry ,biology.protein ,Alpha (ethology) ,Hematology ,Platelet membrane glycoprotein ,Molecular biology ,Cyclic peptide - Published
- 2007
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46. Cryovolcanic features on Titan's surface as revealed by the Cassini Titan Radar Mapper
- Author
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G. Boubin, Michael Allison, Ellen R. Stofan, Charles Elachi, G. Hamilton, Steven J. Ostro, L. Roth, Randolph L. Kirk, William T. K. Johnson, Stephen D. Wall, Y. Anderson, S. Shaffer, Roberto Seu, Philip S. Callahan, Lauren Wye, R. Boehmer, Bryan Stiles, Gian Gabriele Ori, Jani Radebaugh, Karl L. Mitchell, Giovanni Picardi, Howard A. Zebker, Laurence A. Soderblom, Duane O. Muhleman, Richard West, S. Vetrella, Enrico Flamini, R. D. Lorenz, Roberto Orosei, Andrew Dominic Fortes, Jonathan I. Lunine, Yonggyu Gim, K. Kelleher, L. E. Robshaw, Catherine D. Neish, E. Reffet, Pierre Encrenaz, Scott Hensley, Flora Paganelli, Michael Janssen, Rosaly M. C. Lopes, Francesco Posa, Charles A. Wood, G. Francescetti, Jet Propulsion Laboratory, California Institute of Technology (JPL), Proxemy Research, Bowie, Lunar and Planetary Laboratory [University of Arizona] (LPL), University of Arizona, Istituto di Fisica dello Spazio Interplanetario (IFSI), National Research Council of Italy | Consiglio Nazionale delle Ricerche (CNR), US Geological Survey, Flagstaff, Wheeling Jesuit University, Environmental Sciences Department, Lancaster University, University College of London [London] (UCL), Goddard Institute for Space Studies, National Aeronautics and Space Administration New York, Observatoire de Paris, Université Paris sciences et lettres (PSL), Laboratoire d'Etude du Rayonnement et de la Matière en Astrophysique (LERMA), École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Observatoire de Paris, Université Paris sciences et lettres (PSL)-Université de Cergy Pontoise (UCP), Université Paris-Seine-Université Paris-Seine-Centre National de la Recherche Scientifique (CNRS), Instrumentation et télédétection, Laboratoire d'Etude du Rayonnement et de la Matière en Astrophysique et Atmosphères = Laboratory for Studies of Radiation and Matter in Astrophysics and Atmospheres (LERMA), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut national des sciences de l'Univers (INSU - CNRS)-Observatoire de Paris, Université Paris sciences et lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-CY Cergy Paris Université (CY)-École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-CY Cergy Paris Université (CY), Agenzia Spaziale Italiana (ASI), Facoltá di Ingegneria, Geological and Planetary Sciences, California Institute of Technology, Pasadena, International Research School of Planetary Sciences, Dipartimento di Scienze, Università d'Annunzio, Istituto di Astrofisica Spaziale e Fisica cosmica - Roma (IASF-Roma), Istituto Nazionale di Astrofisica (INAF), Universitá La Sapienza, INFM and Dipartimento Interateneo di Fisica, and Stanford University
- Subjects
Synthetic aperture radar ,Solar System ,geography ,satellites of saturn ,titan ,volcanism ,geography.geographical_feature_category ,biology ,Lava ,Astronomy and Astrophysics ,Venus ,biology.organism_classification ,Astrobiology ,law.invention ,symbols.namesake ,Volcano ,Space and Planetary Science ,law ,Radar imaging ,symbols ,Radar ,[PHYS.ASTR]Physics [physics]/Astrophysics [astro-ph] ,Titan (rocket family) ,Geology - Abstract
International audience; The Cassini Titan Radar Mapper obtained Synthetic Aperture Radar images of Titan's surface during four fly-bys during the mission's first year. These images show that Titan's surface is very complex geologically, showing evidence of major planetary geologic processes, including cryovolcanism. This paper discusses the variety of cryovolcanic features identified from SAR images, their possible origin, and their geologic context. The features which we identify as cryovolcanic in origin include a large (180 km diameter) volcanic construct (dome or shield), several extensive flows, and three calderas which appear to be the source of flows. The composition of the cryomagma on Titan is still unknown, but constraints on rheological properties can be estimated using flow thickness. Rheological properties of one flow were estimated and appear inconsistent with ammonia-water slurries, and possibly more consistent with ammonia-water-methanol slurries. The extent of cryovolcanism on Titan is still not known, as only a small fraction of the surface has been imaged at sufficient resolution. Energetic considerations suggest that cryovolcanism may have been a dominant process in the resurfacing of Titan.
- Published
- 2007
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47. Pgc-1α and Nr4a1 Are Target Genes of Circadian Melatonin and Dopamine Release in Murine Retina
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Debra K. Kelleher, Gianluca Tosini, P. Michael Iuvone, Uwe Wolfrum, Kenkichi Baba, Tanja Wolloscheck, Rainer Spessert, S. Anna Sargsyan, and Stefanie Kunst
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Male ,medicine.medical_specialty ,Dopamine ,DNA Mutational Analysis ,Biology ,Melatonin receptor ,Retina ,Melatonin ,Mice ,Internal medicine ,medicine ,Nuclear Receptor Subfamily 4, Group A, Member 1 ,Animals ,Circadian rhythm ,Receptor ,Regulation of gene expression ,DNA ,Adaptation, Physiological ,Peroxisome Proliferator-Activated Receptor Gamma Coactivator 1-alpha ,eye diseases ,Circadian Rhythm ,Mice, Inbred C57BL ,Endocrinology ,Gene Expression Regulation ,Dopamine receptor ,Mutation ,Female ,sense organs ,Signal transduction ,hormones, hormone substitutes, and hormone antagonists ,medicine.drug ,Signal Transduction ,Transcription Factors - Abstract
Purpose The neurohormones melatonin and dopamine mediate clock-dependent/circadian regulation of inner retinal neurons and photoreceptor cells and in this way promote their functional adaptation to time of day and their survival. To fulfill this function they act on melatonin receptor type 1 (MT1 receptors) and dopamine D4 receptors (D4 receptors), respectively. The aim of the present study was to screen transcriptional regulators important for retinal physiology and/or pathology (Dbp, Egr-1, Fos, Nr1d1, Nr2e3, Nr4a1, Pgc-1α, Rorβ) for circadian regulation and dependence on melatonin signaling/MT1 receptors or dopamine signaling/D4 receptors. Methods This was done by gene profiling using quantitative polymerase chain reaction in mice deficient in MT1 or D4 receptors. Results The data obtained determined Pgc-1α and Nr4a1 as transcriptional targets of circadian melatonin and dopamine signaling, respectively. Conclusions The results suggest that Pgc-1α and Nr4a1 represent candidate genes for linking circadian neurohormone release with functional adaptation and healthiness of retina and photoreceptor cells.
- Published
- 2015
48. Transcriptional regulation of nucleoredoxin-like genes takes place on a daily basis in the retina and pineal gland of rats
- Author
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Stefanie Kunst, Tanja Wolloscheck, Debra K. Kelleher, and Rainer Spessert
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Male ,medicine.medical_specialty ,Physiology ,Circadian clock ,Laser Capture Microdissection ,Biology ,Pineal Gland ,Retina ,Pinealocyte ,Rats, Sprague-Dawley ,Pineal gland ,Internal medicine ,Retinitis pigmentosa ,medicine ,Animals ,Photoreceptor Cells ,Circadian rhythm ,RNA, Messenger ,Regulation of gene expression ,Homeodomain Proteins ,Genes, Homeobox ,Nuclear Proteins ,Darkness ,medicine.disease ,Sensory Systems ,Circadian Rhythm ,Rats ,Endocrinology ,medicine.anatomical_structure ,Gene Expression Regulation ,Female ,sense organs ,Oxidoreductases - Abstract
The nucleoredoxin-like gene Nxnl1 (Txnl6) and its paralogue Nxnl2 encode the rod-derived cone viability factors (RdCVF and RdCVF2), which increase the resistance to photooxidative damage and have therapeutic potential for the survival of cones in retinitis pigmentosa. In this study, the transcription of Nxnl genes was investigated as a function of the day/night cycle in rats. The transcript levels of Nxnl1 and Nxnl2 were seen to display daily rhythms with steadily increasing values during the light phase and peak expression around dark onset in preparations of whole retina, photoreceptor cells and—but only in regard to Nxnl1—in photoreceptor-related pinealocytes. The cycling of Nxnl1 but not that of Nxnl2 persisted in constant darkness in the retina. This suggests that daily regulation of Nxnl1 is driven by a circadian clock, whereas that of Nxnl2 is promoted by environmental light. The present data indicate clock- and light-dependent regulations of nucleoredoxin-like genes that may be part of a protective shield against photooxidative damage.
- Published
- 2015
49. Development and verification of a protocol to quantify hip joint kinematics: an evaluation of ice hockey goaltender pads on hip motion
- Author
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Ryan J. Frayne, Leila K. Kelleher, Peter K. Wegscheider, and James P. Dickey
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medicine.medical_specialty ,Adolescent ,Rotation ,Movement ,Posture ,Poison control ,Physical Therapy, Sports Therapy and Rehabilitation ,Kinematics ,Thigh ,Ice hockey ,Young Adult ,Protective Clothing ,medicine ,Femoracetabular Impingement ,Humans ,Orthopedics and Sports Medicine ,Computer vision ,Range of Motion, Articular ,Joint (geology) ,Femoroacetabular impingement ,Protocol (science) ,Artifact (error) ,business.industry ,medicine.disease ,Surgery ,Biomechanical Phenomena ,medicine.anatomical_structure ,Hockey ,Case-Control Studies ,Hip Joint ,Artificial intelligence ,business ,Hip Injuries - Abstract
Background: The butterfly save technique is commonly used by ice hockey goaltenders and has recently been identified as a potential mechanism for hip joint injuries due to the extreme body positions involved. Unfortunately, commonly used kinematic marker sets that determine these body positions are heavily influenced by skin motion artifact and are obscured by protective equipment, making it difficult to obtain reliable measures of hip motion. Purpose: To create a new kinematic protocol that could be used when protective equipment prevents typical marker placements and to use this protocol to quantify hip kinematics and butterfly performance in 4 different goalie pad conditions. Study Design: Controlled laboratory study. Methods: A new marker set consisting of marker clusters attached to the lateral thigh and posterior leg was developed. This marker set was verified by evaluating the root mean square (RMS) difference between the developed testing marker set and the calibrated anatomic systems technique marker set during passive range of motion (ROM) tests. The testing marker set was then used in a repeated-measures study in which 12 junior goaltenders performed 5 butterfly movements on synthetic ice, in 4 different goalie pad conditions (control, flexible-wide leg channel, flexible-tight leg channel, and stiff-wide leg channel). Results: The grouped RMS differences and SDs calculated during verification were 1.43° ± 0.41°, 1.0° ± 0.39°, and 3.32° ± 1.32° for hip flexion-extension, abduction-adduction, and internal-external rotation, respectively. There was no significant main effect of goal pad condition on the peak amount of hip internal rotation; however, there was a significant main effect of goal pad condition on the butterfly width ( P = .022). Post hoc comparisons revealed that the butterfly width was significantly smaller in the control pad condition compared with the flexible-tight pad condition ( P = .03). Conclusion: The new marker set enabled measurements of hip joint kinematics while subjects are wearing protective equipment that are not possible with other marker sets. Interindividual variations in performance of the butterfly technique influenced the amount of hip internal rotation achieved; however, on average, goaltenders exceeded their active internal ROM during butterfly movements. Clinical Relevance: Exceeding internal rotation range of hip motion may make goaltenders susceptible to hip injuries such as femoral acetabular impingement.
- Published
- 2015
50. A New Architecture for Coastal Inundation and Flood Warning Prediction
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Shaowu Bao, David A. Dickey, Lian Xie, M. Davidson, Thomas R. Karl, Machuan Peng, K Kelleher, Huiqing Liu, Meng Xia, and Leonard J. Pietrafesa
- Subjects
Flood warning ,Coastal hazards ,Meteorology ,Climatology ,Natural hazard ,Streamflow ,Flooding (psychology) ,Environmental science ,Storm surge ,Ocean Engineering ,Storm ,Oceanography ,Coastal flood - Abstract
The marine atmosphere, coastal ocean, estuary, harbor and river water systems constitute a physically coupled system. While these systems have always been heavily impacted by coastal storms, increases in population density, infrastructure, and personal and business merchandise have exacerbated the economic and personal impacts of these events over the past half century. As such there has been increased focus on the need for more timely and accurate forecasts of impending events. Traditionally model forecast architectures for coastal storm surge, flooding and inundation of coastal and inland areas have taken the approach of dealing with each system separately: rivers, estuaries, harbors and offshore facing areas. However, given advances in coupled modeling and the availability of real-time data, the ability to accurately predict and project coastal, estuary and inland flooding related to the passage of high energy and wet atmospheric events is rapidly emerging and requires a new paradigm in system architecture. No longer do monthly averaged winds or river discharge or water levels have to be invoked in developing hindcasts for planning purposes or for real-time forecasts. In 1999 a hurricane associated flood on the North Carolina coast took 56 lives and caused more than $6 billion in economic impacts. None of the models existing at that time were able to properly forecast the massive flooding and clearly called for a new model paradigm. Here we propose a model system that couples atmospheric information to fully three dimensional, non-linear time dependent ocean basin, coastal and estuary hydrodynamic models coupled to interactive river models with input of real or modeled winds, observed or modeled precipitation, measured and modeled water levels, and streamflow. The river and estuarine components must both be capable of going into modes of storage or accelerated discharge. Spatial scales must downscale in the horizontal from thousands to tens meters and in the vertical from hundreds to several centimeters. Topography and elevation data should be of the highest resolution available, necessary for highly accurate predictions of the timing and location of the inundation and retreat of flood waters. Precipitation information must be derived from the optimal mix of direct radar, satellite and ground-based observations. Creating the capability described above will advance the modernization of hydrologic services provided by the National Oceanic & Atmospheric Administration and provide more accurate and timely forecasts and climatologies of coastal and estuary flooding. The goal of these climatologies and improved forecasts is to provide better information to local and regional planners, emergency managers, highway patrols and to improve the capacity of coastal communities to mitigate against the impacts of coastal flooding.
- Published
- 2006
- Full Text
- View/download PDF
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