110 results on '"K D, Kim"'
Search Results
2. The Effect of Globus Pallidus Interna Deep Brain Stimulation on a Dystonia Patient with the Mutation Compared to Patients with DYT1 and DYT6
- Author
-
Jong Hyeon Ahn, Ah Reum Kim, Nayoung K. D. Kim, Woong-Yang Park, Ji Sun Kim, Minkyeong Kim, Jongkyu Park, Jung-Il Lee, Jin Whan Cho, Kyung Rae Cho, and Jinyoung Youn
- Subjects
Deep brain stimulation ,Dystonia ,DYT25 ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Objective The aim of this study was to investigate the efficacy of globus pallidus interna deep brain stimulation (GPi-DBS) for treating dystonia due to the GNAL mutation. Methods We provide the first report of a dystonia patient with a genetically confirmed GNAL mutation in the Korean population and reviewed the literature on patients with the GNAL mutation who underwent GPi-DBS. We compared the effectiveness of DBS in patients with the GNAL mutation compared to that in patients with DYT1 and DYT6 in a previous study. Results Patients with the GNAL mutation and those with DYT1 had higher early responder rates (GNAL, 5/5, 100%; DYT1, 7/7, 100%) than did patients with DYT6 (p = 0.047). The responder rates at late follow-up did not differ statistically among the three groups (p = 0.278). The decrease in the dystonia motor scale score in the GNAL group was 46.9% at early follow-up and 63.4% at late follow-up. Conclusion GPi-DBS would be an effective treatment option for dystonia patients with the GNAL mutation who are resistant to medication or botulinum toxin treatment.
- Published
- 2019
- Full Text
- View/download PDF
3. Clinical advantage of targeted sequencing for unbiased tumor mutational burden estimation in samples with low tumor purity
- Author
-
Nayoung K D Kim, Woong-Yang Park, Sehhoon Park, Se-Hoon Lee, Jin Seok Ahn, Myung-Ju Ahn, Keunchil Park, Jong-Mu Sun, Boram Lee, Tae Hee Hong, Hongui Cha, Joon Ho Shim, Jongsuk Chung, Chung Lee, Yoon-La Choi, Soohyun Hwang, Yoomi Lee, Hyun Ae Jung, Ji-Yeon Kim, and Yeon Hee Park
- Subjects
Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Background Tumor mutational burden (TMB) measurement is limited by low tumor purity of samples, which can influence prediction of the immunotherapy response, particularly when using whole-exome sequencing-based TMB (wTMB). This issue could be overcome by targeted panel sequencing-based TMB (pTMB) with higher depth of coverage, which remains unexplored.Methods We comprehensively reanalyzed four public datasets of immune checkpoint inhibitor (ICI)-treated cohorts (adopting pTMB or wTMB) to test each biomarker’s predictive ability for low purity samples (cut-off: 30%). For validation, paired genomic profiling with the same tumor specimens was performed to directly compare wTMB and pTMB in patients with breast cancer (paired-BRCA, n=165) and ICI-treated patients with advanced non-small-cell lung cancer (paired-NSCLC, n=156).Results Low tumor purity was common (range 30%–45%) in real-world samples from ICI-treated patients. In the survival analyzes of public cohorts, wTMB could not predict the clinical benefit of immunotherapy when tumor purity was low (log-rank p=0.874), whereas pTMB could effectively stratify the survival outcome (log-rank p=0.020). In the paired-BRCA and paired-NSCLC cohorts, pTMB was less affected by tumor purity, with significantly more somatic variants identified at low allele frequency (p
- Published
- 2020
- Full Text
- View/download PDF
4. Mutational and phenotypic spectrum of OTOF-related auditory neuropathy in Koreans: eliciting reciprocal interaction between bench and clinics
- Author
-
Bong Jik Kim, Jeong Hun Jang, Jin Hee Han, Hye-Rim Park, Doo Yi Oh, Seungmin Lee, Min Young Kim, Ah Reum Kim, Chung Lee, Nayoung K. D. Kim, Woong-Yang Park, Yun-Hoon Choung, and Byung Yoon Choi
- Subjects
OTOF ,Auditory neuropathy spectrum disorder ,Whole exome sequencing ,DFNB9 ,Auditory steady-state response ,Cochlear implantation ,Medicine - Abstract
Abstract Background While auditory neuropathy spectrum disorder (ANSD) is a heterogeneous disorder and its management quite varies depending upon the etiology, even including self-resolution, OTOF is an important molecular etiology of prelingual ANSD and has emerged as an attractive target for implementation of precision medicine in terms of timing and prognosis prediction of auditory rehabilitation. However, to date, the literature is lacking in the genotype–phenotype relationship of this gene as well as efficient molecular testing strategy in the clinic in many populations and to make things more complicated in Koreans, the most prevalent variant p.Arg1939Gln among Korean ANSD children frequently evaded detection by next generation sequencing (NGS), resulting in delayed genetic diagnosis and late cochlear implantation (CI). The aims of this study are to document the mutational and phenotypic spectrum of OTOF-related ANSD (DFNB9) in the Korean population, further establishing genotype–phenotype correlation and proposing a set of the most commonly found OTOF variants to be screened first. Methods Genetic diagnosis through the NGS-based sequencing was made on patients with ANSD in two tertiary hospitals. Genotype and phenotypes of eleven DFNB9 patients were reviewed. For data analysis, Mann–Whitney test and Fisher’s exact test were applied. Results This study disclosed four prevalent variants in Koreans: p.Arg1939Gln with an allele frequency of 40.9%, p.Glu841Lys (13.6%), p.Leu1011Pro and p.Arg1856Trp (9.1%). Three novel variants (c.4227 + 5G > C, p.Gly1845Glu, and p.Pro1931Thr) were identified. Interestingly, a significant association of p.Arg1939Gln with worse ASSR thresholds was observed despite consistently no ABR response. Ten of 11 DFNB9 patients received CI for auditory rehabilitation, showing favorable outcomes with more rapid improvement on early-CI group (age at CI ≤ 18 mo.) than late-CI group. Conclusions This study included the largest Korean DFNB9 cohort to date and proposed a set of the most frequent four OTOF variants, allowing the potential prioritization of exons during Sanger sequencing. Further, a significant association of p.Arg1939Gln homozygotes with poor residual hearing was observed. We may have to suspect p.Arg1939Gln homozygosity in cases of poor auditory thresholds in ANSD children with putative negative OTOF variants solely screened by NGS. Reciprocal feedback between bench and clinics regarding DFNB9 would complement each other.
- Published
- 2018
- Full Text
- View/download PDF
5. Prevalence and detection of low-allele-fraction variants in clinical cancer samples
- Author
-
Hyun-Tae Shin, Yoon-La Choi, Jae Won Yun, Nayoung K. D. Kim, Sook-Young Kim, Hyo Jeong Jeon, Jae-Yong Nam, Chung Lee, Daeun Ryu, Sang Cheol Kim, Kyunghee Park, Eunjin Lee, Joon Seol Bae, Dae Soon Son, Je-Gun Joung, Jeeyun Lee, Seung Tae Kim, Myung-Ju Ahn, Se-Hoon Lee, Jin Seok Ahn, Woo Yong Lee, Bo Young Oh, Yeon Hee Park, Jeong Eon Lee, Kwang Hyuk Lee, Hee Cheol Kim, Kyoung-Mee Kim, Young-Hyuck Im, Keunchil Park, Peter J. Park, and Woong-Yang Park
- Subjects
Science - Abstract
High-throughput sequencing is used to identify somatic variants in cancer patients. Here, the authors perform panel-based profiling of 5095 clinical samples and demonstrate that many clinically-actionable variants have low variant allele fractions, requiring assays with high detection sensitivity.
- Published
- 2017
- Full Text
- View/download PDF
6. gene amplification in patients with metastatic cancer
- Author
-
Su Jin Lee, Nayoung K. D. Kim, Se-Hoon Lee, Seung Tae Kim, Se Hoon Park, Joon Oh Park, Young Suk Park, Ho Yeong Lim, Won Ki Kang, Woong Yang Park, Hee Jin Bang, Kyoung-Mee Kim, Keunchil Park, and Jeeyun Lee
- Subjects
NGS cancer panel ,gene amplification ,TRK immunohistochemistry ,Medicine - Abstract
Purpose Neurotropic tropomyosin receptor kinase (NTRK) fusions have been identified in a variety of cancers, and tyrosine kinase inhibitors targeting the tropomyosin receptor kinase (TRK) receptor are currently in clinical trials. However, no reports are available on the effects of NTRK gene amplification. Methods Samples from patients enrolled in the sequencing program were analyzed using a next-generation sequencing (NGS) cancer panel. For cases in which NTRK amplification (defined as ≥ 4.0 copies) was identified, panTRK immunohistochemical (IHC) staining of tissue microarrays was performed. Results A total of 1,250 tumor specimens collected between February 2014 and January 2016 were analyzed using the NGS cancer panel. NTRK amplification was detected in 28 cases of various types of cancer. Among 27 cases, only four were positive for pan-TRK IHC. These four cases were melanoma, sarcoma, lung cancer, and gastric cancer. We found that 2.2% of cancer patients showed NTRK amplification using NGS cancer panel and NTRK amplification resulted in protein overexpression in 14.8% of these patients. Conclusion Patients with NTRK amplification and increased TRK protein expression may be considered for inclusion in clinical trials for NTRK inhibitors.
- Published
- 2017
- Full Text
- View/download PDF
7. Characterization of background noise in capture-based targeted sequencing data
- Author
-
Gahee Park, Joo Kyung Park, Seung-Ho Shin, Hyo-Jeong Jeon, Nayoung K. D. Kim, Yeon Jeong Kim, Hyun-Tae Shin, Eunjin Lee, Kwang Hyuck Lee, Dae-Soon Son, Woong-Yang Park, and Donghyun Park
- Subjects
Next-generation sequencing ,Targeted deep sequencing ,Substitution rate ,Background error ,DNA fragmentation ,Plasma DNA ,Biology (General) ,QH301-705.5 ,Genetics ,QH426-470 - Abstract
Abstract Background Targeted deep sequencing is increasingly used to detect low-allelic fraction variants; it is therefore essential that errors that constitute baseline noise and impose a practical limit on detection are characterized. In the present study, we systematically evaluate the extent to which errors are incurred during specific steps of the capture-based targeted sequencing process. Results We removed most sequencing artifacts by filtering out low-quality bases and then analyze the remaining background noise. By recognizing that plasma DNA is naturally fragmented to be of a size comparable to that of mono-nucleosomal DNA, we were able to identify and characterize errors that are specifically associated with acoustic shearing. Two-thirds of C:G > A:T errors and one quarter of C:G > G:C errors were attributed to the oxidation of guanine during acoustic shearing, and this was further validated by comparative experiments conducted under different shearing conditions. The acoustic shearing step also causes A > G and A > T substitutions localized to the end bases of sheared DNA fragments, indicating a probable association of these errors with DNA breakage. Finally, the hybrid selection step contributes to one-third of the remaining C:G > A:T and one-fifth of the C > T errors. Conclusions The results of this study provide a comprehensive summary of various errors incurred during targeted deep sequencing, and their underlying causes. This information will be invaluable to drive technical improvements in this sequencing method, and may increase the future usage of targeted deep sequencing methods for low-allelic fraction variant detection.
- Published
- 2017
- Full Text
- View/download PDF
8. Good Laboratory Standards for Clinical Next-Generation Sequencing Cancer Panel Tests
- Author
-
Jihun Kim, Woong-Yang Park, Nayoung K. D. Kim, Se Jin Jang, Sung-Min Chun, Chang-Ohk Sung, Jene Choi, Young-Hyeh Ko, Yoon-La Choi, Hyo Sup Shim, and Jae-Kyung Won
- Subjects
High-throughput nucleotide sequencing ,Molecular pathology ,Neoplasms ,Quality control ,Practice guidelines as topic ,Pathology ,RB1-214 - Abstract
Next-generation sequencing (NGS) has recently emerged as an essential component of personalized cancer medicine due to its high throughput and low per-base cost. However, no sufficient guidelines for implementing NGS as a clinical molecular pathology test are established in Korea. To ensure clinical grade quality without inhibiting adoption of NGS, a taskforce team assembled by the Korean Society of Pathologists developed laboratory guidelines for NGS cancer panel testing procedures and requirements for clinical implementation of NGS. This consensus standard proposal consists of two parts: laboratory guidelines and requirements for clinical NGS laboratories. The laboratory guidelines part addressed several important issues across multistep NGS cancer panel tests including choice of gene panel and platform, sample handling, nucleic acid management, sample identity tracking, library preparation, sequencing, analysis and reporting. Requirements for clinical NGS tests were summarized in terms of documentation, validation, quality management, and other required written policies. Together with appropriate pathologist training and international laboratory standards, these laboratory standards would help molecular pathology laboratories to successfully implement NGS cancer panel tests in clinic. In this way, the oncology community would be able to help patients to benefit more from personalized cancer medicine.
- Published
- 2017
- Full Text
- View/download PDF
9. Evaluation of somatic copy number estimation tools for whole-exome sequencing data.
- Author
-
Jae-Yong Nam, Nayoung K. D. Kim, Sang Cheol Kim, Je-Gun Joung, Ruibin Xi, Semin Lee, Peter J. Park, and Woong-Yang Park
- Published
- 2016
- Full Text
- View/download PDF
10. Discovery of actionable genetic alterations with targeted panel sequencing in children with relapsed or refractory solid tumors.
- Author
-
Ji Won Lee, Nayoung K D Kim, Soo Hyun Lee, Hee Won Cho, Youngeun Ma, Hee Young Ju, Keon Hee Yoo, Ki Woong Sung, Hong Hoe Koo, and Woong-Yang Park
- Subjects
Medicine ,Science - Abstract
Advances in genomic technologies and the development of targeted therapeutics are making the use of precision medicine increasingly possible. In this study, we explored whether precision medicine can be applied for the management of refractory/relapsed pediatric solid tumors by discovering actionable alterations using targeted panel sequencing. Samples of refractory/relapsed pediatric solid tumors were tested using a targeted sequencing panel covering the exonic DNA sequences of 381 cancer genes and introns across 22 genes to detect clinically significant genomic aberrations in tumors. The molecular targets were tiered from 1 to 5 based on the presence of actionable genetic alterations, strength of supporting evidence, and drug availability in the Republic of Korea. From January 2016 to October 2018, 55 patients were enrolled. The median time from tissue acquisition to drug selection was 29 d (range 14-39), and tumor profiling was successful in 53 (96.4%) patients. A total of 27 actionable alterations in tiers 1-4 were detected in 20 patients (36.4%), and the majority of actionable alterations were copy number variations. The tiers of molecular alterations were tier 1 (clinical evidence) in 4 variants, tier 2 (preclinical evidence) in 8 variants, tier 3 (consensus opinion) in 2 variants, and tier 4 (actionable variants with a drug that is available in other countries but not in the Republic of Korea) in 9 variants. In one patient with relapsed neuroblastoma with ALK F1174L mutation and ALK amplification, lorlatinib was used in a compassionate use program, and it showed some efficacy. In conclusion, using a targeted sequencing panel to discover actionable alterations in relapsed/refractory pediatric solid tumors was practical and feasible.
- Published
- 2019
- Full Text
- View/download PDF
11. Development of High Voltage Multilayer Ceramic Capacitor
- Author
-
Hyungsuk K. D. Kim
- Published
- 2023
- Full Text
- View/download PDF
12. Differences in the Vegetation within Deogyusan National Park and the Surrounding Landscape: Implications for National Park Conservation
- Author
-
S. C. Jeong, I. W. Lee, J. Y. Lee, and K. D. Kim
- Subjects
Ecology, Evolution, Behavior and Systematics - Published
- 2021
- Full Text
- View/download PDF
13. A Study on the Development of Playback Control Software for Mark5B VSI System
- Author
-
S. J. Oh, J. H. Yeom, D. G. Roh, H. S. Chung, K. D. Kim, and Roger Cappallo
- Subjects
Mark5B ,playback ,VLBI standard interface ,Korean VLBI network ,Astronomy ,QB1-991 - Abstract
We developed the playback control software for a high-speed playback system which is a component of the Korea-Japan Joint VLBI Correlator (KJJVC). The Mark5B system, which is a recorder and playback system used in the Korean VLBI Network (KVN), has two kinds of operation mode. That is to say, the station unit (SU) mode, which is for the present Mark4 system, and the VSI mode, which is for the new VLBI standard interface (VSI) system. The software for SU is already developed and widely used in the Mark4 type VLBI system, but the software for VSI has only been developed for recording. The new VLBI system is designed with a VSI interface for compatibility between different systems. Therefore, the playback control software development of the VSI mode is needed for KVN. In this work, we developed the playback control software of the Mark5B VSI mode. The developed playback control software consists of an application part for data playing back, a data input/output part for the VSI board, a module for the StreamStor RAID board, and a user interface part, including an observation time control part. To verify the performance of developed playback control software, the playback and correlation experiments were performed using the real observation data in Mark5B system and KJJVC. To check the observation time control, the data playback experiment was performed between the Mark5B and Raw VLBI Data Buffer (RVDB) systems. Through the experimental results, we confirmed the performance of developed playback control software in the Mark5B VSI mode.
- Published
- 2010
- Full Text
- View/download PDF
14. REDOX BEHAVIOR AND DIFFUSIVITY OF ANTIMONY AND CERIUM ION IN ALKALI ALKALINE EARTH SILICATE GLASS MELTS
- Author
-
K. D. Kim and S. H. Lee
- Subjects
Antimony ion ,Cerium ion ,Redox equilibrium ,CRT model glass melts ,Square wave voltammetry ,Clay industries. Ceramics. Glass ,TP785-869 - Abstract
Redox behavior and diffusivity of antimony and cerium ion in alkali alkaline earth silicate CRT (Cathode Ray Tube) model glass melts were studied by means of square wave voltammetry under the frequency range of 5-1000 Hz and in the temperature range of 800-1400°C. According to voltammogram, peaks due to Sb³⁺/Sb⁰ were positioned in the negative potential region while peaks due to Sb⁵⁺/Sb³⁺ and Ce⁴⁺/Ce³⁺ were found in the positive potential region. By using some equations, correlation for peak potential versus temperature and peak current versus reciprocal frequency was examined, respectively. Their correlation showed a linear relation in the applied temperature and frequency range. Based on the linear relationship, thermodynamic and kinetic properties for each redox reaction were suggested.
- Published
- 2010
15. Discovery of CDH23 as a Significant Contributor to Progressive Postlingual Sensorineural Hearing Loss in Koreans.
- Author
-
Bong Jik Kim, Ah Reum Kim, Chung Lee, So Young Kim, Nayoung K D Kim, Mun Young Chang, Jihye Rhee, Mi-Hyun Park, Soo Kyung Koo, Min Young Kim, Jin Hee Han, Seung-Ha Oh, Woong-Yang Park, and Byung Yoon Choi
- Subjects
Medicine ,Science - Abstract
CDH23 mutations have mostly been associated with prelingual severe-to-profound sensorineural hearing loss (SNHL) in either syndromic or nonsyndromic SNHL (DFNB12). Herein, we demonstrate the contribution of CDH23 mutations to postlingual nonsyndromic SNHL (NS-SNHL). We screened 32 Korean adult probands with postlingual NS-SNHL sporadically or in autosomal recessive fashion using targeted panel or whole exome sequencing. We identified four (12.5%, 4/32) potential postlingual DFNB12 families that segregated the recessive CDH23 variants, qualifying for our criteria along with rapidly progressive SNHL. Three of the four families carried one definite pathogenic CDH23 variant previously known as the prelingual DFNB12 variant in a trans configuration with rare CDH23 variants. To determine the contribution of rare CDH23 variants to the postlingual NS-SNHL, we checked the minor allele frequency (MAF) of CDH23 variants detected from our postlingual NS-SNHL cohort and prelingual NS-SNHL cohort, among the 2040 normal control chromosomes. The allele frequency of these CDH23 variants in our postlingual cohort was 12.5%, which was significantly higher than that of the 2040 control chromosomes (5.53%), confirming the contribution of these rare CDH23 variants to postlingual NS-SNHL. Furthermore, MAF of rare CDH23 variants from the postlingual NS-SNHL group was significantly higher than that from the prelingual NS-SNHL group. This study demonstrates an important contribution of CDH23 mutations to poslingual NS-SNHL and shows that the phenotypic spectrum of DFNB12 can be broadened even into the presbycusis, depending on the pathogenic potential of variants. We also propose that pathogenic potential of CDH23 variants and the clinical fate of DFNB12 may be predicted by MAF.
- Published
- 2016
- Full Text
- View/download PDF
16. A Design Study of 100GHz Band Local Oscillator System by Using Yig Oscillator
- Author
-
Changhoon Lee, K. D. Kim, H. R. Kim, M. H. Jung, S. T. Han, D. H. Jae, and T. S. Kim
- Subjects
radio astronomy observation ,receiver system ,local oscillator ,PLL system ,Astronomy ,QB1-991 - Abstract
In this paper, we make a design study for a local oscillator system of the 100 GHz band cosmic radio receiving system. We use the YIG oscillator with digital driver which is the main oscillator. This oscillator has a good frequency and phase stability at some temperature variation, and the easy computer aided control characteristics. This total system designed to two subsystem, first is the oscillator system include YIG oscillator, tripler, harmonic mixer and triplexer etc., second is the PLL system to supply the precise and stable local oscillator frequency to mixer. The proposed local oscillator system in this paper can be used in a single or multi pixel receiver because this system can be lock the local oscillator frequency automatically using PC.
- Published
- 2003
- Full Text
- View/download PDF
17. Downsloping high-frequency hearing loss due to inner ear tricellular tight junction disruption by a novel ILDR1 mutation in the Ig-like domain.
- Author
-
Nayoung K D Kim, Tomohito Higashi, Kyoung Yeul Lee, Ah Reum Kim, Shin-ichiro Kitajiri, Min Young Kim, Mun Young Chang, Veronica Kim, Seung-Ha Oh, Dongsup Kim, Mikio Furuse, Woong-Yang Park, and Byung Yoon Choi
- Subjects
Medicine ,Science - Abstract
The immunoglobulin (Ig)-like domain containing receptor 1 (ILDR1) gene encodes angulin-2/ILDR1, a recently discovered tight junction protein, which forms tricellular tight junction (tTJ) structures with tricellulin and lipolysis-stimulated lipoprotein receptor (LSR) at tricellular contacts (TCs) in the inner ear. Previously reported recessive mutations within ILDR1 have been shown to cause severe to profound nonsyndromic sensorineural hearing loss (SNHL), DFNB42. Whole-exome sequencing of a Korean multiplex family segregating partial deafness identified a novel homozygous ILDR1 variant (p.P69H) within the Ig-like domain. To address the pathogenicity of p.P69H, the angulin-2/ILDR1 p.P69H variant protein, along with the previously reported pathogenic ILDR1 mutations, was expressed in angulin-1/LSR knockdown epithelial cells. Interestingly, partial mislocalization of the p.P69H variant protein and tricellulin at TCs was observed, in contrast to a severe mislocalization and complete failure of tricellulin recruitment of the other reported ILDR1 mutations. Additionally, three-dimensional protein modeling revealed that angulin-2/ILDR1 contributed to tTJ by forming a homo-trimer structure through its Ig-like domain, and the p.P69H variant was predicted to disturb homo-trimer formation. In this study, we propose a possible role of angulin-2/ILDR1 in tTJ formation in the inner ear and a wider audiologic phenotypic spectrum of DFNB42 caused by mutations within ILDR1.
- Published
- 2015
- Full Text
- View/download PDF
18. A Design Study of the 400MHz Wide-Band Digital Autocorrelation Spectrometer
- Author
-
C. H. Lee, K. D. Kim, S. T. Han, T. S. Kim, H. K. Choi, D. Y. Byun, and B. C. Koo
- Subjects
autocorrelation spectrometer ,digital study ,radio astronomy ,Astronomy ,QB1-991 - Abstract
Abstract In this paper, we performed the design study of a wide-band digital autocorrelation spectrometer for the observation study of an extra-galaxy's spectral lines and the survey research of the special radio sources in field of the radio astronomy observational research. The autocorrelation spectrometer designed in this paper can be used to their spectrometer of any system because this spectrometer has a wide dynamic power and frequency range properties. In this system we use the aliasing sampling method to minimize the band loss. For the output signal of the correlator we can increase the signal processing speed using by a special DSP chip, the integration and the FFT using hardware, so this spectrometer can support the newest developed technique for the radio astronomy observation so called ``On the fly" method.
- Published
- 2002
- Full Text
- View/download PDF
19. Betulinic acid inhibits high-fat diet-induced obesity and improves energy balance by activating AMPK
- Author
-
Sung Hyun Yang, K.-D. Kim, Hoe-Yune Jung, Jong-Seong Jeon, J.-B. Kim, C.-K. Hyun, Hye Guk Ryu, C.H. Park, B.-H. Choi, H.Y. Yoo, Bobae Kim, Kyong-Tai Kim, and S. Fang
- Subjects
Male ,medicine.medical_specialty ,Endocrinology, Diabetes and Metabolism ,Medicine (miscellaneous) ,030209 endocrinology & metabolism ,Oxidative phosphorylation ,AMP-Activated Protein Kinases ,030204 cardiovascular system & hematology ,Diet, High-Fat ,Weight Gain ,Mice ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Lipid oxidation ,Non-alcoholic Fatty Liver Disease ,3T3-L1 Cells ,Internal medicine ,Betulinic acid ,Nonalcoholic fatty liver disease ,Adipocytes ,medicine ,Animals ,Obesity ,Phosphorylation ,Betulinic Acid ,Adiposity ,Nutrition and Dietetics ,Chemistry ,AMPK ,medicine.disease ,Triterpenes ,Enzyme Activation ,Mice, Inbred C57BL ,Disease Models, Animal ,Endocrinology ,Liver ,Anti-Obesity Agents ,Steatosis ,Energy Metabolism ,Pentacyclic Triterpenes ,Cardiology and Cardiovascular Medicine ,Thermogenesis ,Signal Transduction - Abstract
Background and aim Metabolic syndromes are prevalent worldwide and result in various complications including obesity, cardiovascular disease and type II diabetes. Betulinic acid (BA) is a naturally occurring triterpenoid that has anti-inflammatory properties. We hypothesized that treatment with BA may result in decreased body weight gain, adiposity and hepatic steatosis in a diet-induced mouse model of obesity. Methods and results Mice fed a high-fat diet and treated with BA showed less weight gain and tissue adiposity without any change in calorie intake. Gene expression profiling of mouse tissues and cell lines revealed that BA treatment increased expression of lipid oxidative genes and decreased that of lipogenesis-related genes. This modulation was mediated by increased AMP-activated protein kinase (AMPK) phosphorylation, which facilitates energy expenditure, lipid oxidation and thermogenic capacity and exerts protective effects against obesity and nonalcoholic fatty liver disease. Overall, BA markedly inhibited the development of obesity and nonalcoholic fatty liver disease in mice fed a high-fat diet, and AMPK activation in various tissues and enhanced thermogenesis are two possible mechanisms underlying the antiobesity and antisteatogenic effects of BA. Conclusions The current findings suggest that treatment with BA is a potential dietary strategy for preventing obesity and nonalcoholic fatty liver disease.
- Published
- 2019
- Full Text
- View/download PDF
20. Application of the Transition Model of Edge Pedestal Properties in jϕ-α Space to a KSTAR-like Tokamak
- Author
-
Sun-Whe Kim, K. D. Kim, and Oh Kuen Kwon
- Subjects
010302 applied physics ,Materials science ,Tokamak ,Condensed matter physics ,Plasma parameters ,General Physics and Astronomy ,02 engineering and technology ,Plasma ,Edge (geometry) ,021001 nanoscience & nanotechnology ,01 natural sciences ,Ballooning ,law.invention ,Pedestal ,Physics::Plasma Physics ,law ,KSTAR ,0103 physical sciences ,0210 nano-technology ,Current density - Abstract
We calculated the transition of edge pedestal properties in jϕ-α space for a KSTAR-like plasma and compared the results with those from the analytical transition model. The transition is from a critical equilibrium that is marginally stable to the peeling or the ballooning mode to another critical equilibrium when plasma parameters such as triangularity, elongation, and βp change. The transition should not be confused with the L-H transition. We have divided the transition into two. The first transition is when plasma parameters change for fixed pedestal width while the second transition is when the pedestal width changes for fixed plasma parameters. The direction of the first transition when triangularity or elongation increases is as such that jϕ decreases and α increases. The direction of the first transition with varying βp depends on the choice of how the temperature or the current density is modified. The direction of the second transition is determined from the stability condition of the new equilibrium after the first transition.
- Published
- 2019
- Full Text
- View/download PDF
21. Boundary implications for frequency response of interval FIR and IIR filters.
- Author
-
Nirmal K. Bose and K. D. Kim
- Published
- 1991
- Full Text
- View/download PDF
22. Correction: Park et al. Genetic Study in Korean Pediatric Patients with Steroid-Resistant Nephrotic Syndrome or Focal Segmental Glomerulosclerosis. J. Clin. Med. 2020, 9, 2013
- Author
-
Eujin Park, Chung Lee, Nayoung K. D. Kim, Yo Han Ahn, Young Seo Park, Joo Hoon Lee, Seong Heon Kim, Min Hyun Cho, Heeyeon Cho, Kee Hwan Yoo, Jae Il Shin, Hee Gyung Kang, Il-Soo Ha, Woong-Yang Park, and Hae Il Cheong
- Subjects
General Medicine - Abstract
In the original article [...]
- Published
- 2022
- Full Text
- View/download PDF
23. Junction Location Identifier (JuLI): Accurate Detection of DNA Fusions in Clinical Sequencing for Precision Oncology
- Author
-
Hyun-Tae, Shin, Nayoung K D, Kim, Jae Won, Yun, Boram, Lee, Sungkyu, Kyung, Ki-Wook, Lee, Daeun, Ryu, Jinho, Kim, Joon Seol, Bae, Donghyun, Park, Yoon-La, Choi, Se-Hoon, Lee, Myung-Ju, Ahn, Keunchil, Park, and Woong-Yang, Park
- Subjects
Oncogene Proteins, Fusion ,Clinical Decision-Making ,Computational Biology ,High-Throughput Nucleotide Sequencing ,Reproducibility of Results ,Genomics ,Medical Oncology ,Immunohistochemistry ,Polymerase Chain Reaction ,Sensitivity and Specificity ,Workflow ,Chromosome Breakpoints ,Cell Line, Tumor ,Neoplasms ,Humans ,Genetic Testing ,Precision Medicine ,Algorithms ,DNA Damage - Abstract
Accurate detection of genomic fusions by high-throughput sequencing in clinical samples with inadequate tumor purity and formalin-fixed, paraffin-embedded tissue is an essential task in precise oncology. We developed the fusion detection algorithm Junction Location Identifier (JuLI) for optimization of high-depth clinical sequencing. Novel filtering steps were implemented to minimize false positives in the clinical setting. The algorithm was comprehensively validated using high-depth sequencing data from cancer cell lines and clinical samples and genome sequencing data from NA12878. JuLI showed improved performance mainly in positive predictive value over state-of-the-art fusion callers in cases with high-depth clinical sequencing and rescued a driver fusion from false negative in plasma cell-free DNA using joint calling.
- Published
- 2019
24. Differential disruption of autoinhibition and defect in assembly of cytoskeleton during cell division decide the fate of human
- Author
-
Bong Jik, Kim, Takehiko, Ueyama, Takushi, Miyoshi, Seungmin, Lee, Jin Hee, Han, Hye-Rim, Park, Ah Reum, Kim, Jayoung, Oh, Min Young, Kim, Yong Seok, Kang, Doo Yi, Oh, Jiwon, Yun, Sang Mee, Hwang, Nayoung K D, Kim, Woong-Yang, Park, Shin-Ichiro, Kitajiri, and Byung Yoon, Choi
- Subjects
Male ,Formins ,Microtubules ,Actin Cytoskeleton ,Protein Domains ,Mutation ,Exome Sequencing ,Humans ,Female ,Mutant Proteins ,Hearing Loss ,Cell Division ,Cytoskeleton ,Genetic Association Studies - Abstract
Diaphanous-related formin 1 (DIA1), which assembles the unbranched actin microfilament and microtubule cytoskeleton, is encoded byHere, we report the first constitutively active mutant in the DID (p.A265S) of humans with only hearing loss and not blood cell abnormality through whole exome sequencing. The previously reported DAD mutants and our DID mutant (p.A265S) shared the finding of diminished autoinhibitory interaction, abnormally upregulated actin polymerisation activity and increased localisations at the plasma membrane. However, the obvious defect in the DIA1-driven assembly of cytoskeleton 'during cell division' was only from the DAD mutants, not from p.A265S, which did not show any blood cell abnormality. We also evaluated the five DID mutants in the hydrophobic pocket since four of these five additional mutants were predicted to critically disrupt interaction between the DID and DAD. These additional pathogenic DID mutants revealed varying degrees of defect in the DIA1-driven cytoskeleton assembly, including nearly normal phenotype during cell division as well as obvious impaired autoinhibition, again coinciding with our key observation in DIA1 mutant (p.A265S) in the DID.Here, we report the first mutant in the DID of humans with only hearing loss. The differential cell biological phenotypes of DIA1 during cell division appear to be potential determinants of the clinical severity of
- Published
- 2019
25. The Effect of Globus Pallidus Interna Deep Brain Stimulation on a Dystonia Patient with the GNAL Mutation Compared to Patients with DYT1 and DYT6
- Author
-
Jong Hyeon, Ahn, Ah Reum, Kim, Nayoung K D, Kim, Woong-Yang, Park, Ji Sun, Kim, Minkyeong, Kim, Jongkyu, Park, Jung-Il, Lee, Jin Whan, Cho, Kyung Rae, Cho, and Jinyoung, Youn
- Subjects
Dystonia ,Deep brain stimulation ,GNAL ,Brief Communication ,nervous system diseases ,DYT25 - Abstract
Objective The aim of this study was to investigate the efficacy of globus pallidus interna deep brain stimulation (GPi-DBS) for treating dystonia due to the GNAL mutation. Methods We provide the first report of a dystonia patient with a genetically confirmed GNAL mutation in the Korean population and reviewed the literature on patients with the GNAL mutation who underwent GPi-DBS. We compared the effectiveness of DBS in patients with the GNAL mutation compared to that in patients with DYT1 and DYT6 in a previous study. Results Patients with the GNAL mutation and those with DYT1 had higher early responder rates (GNAL, 5/5, 100%; DYT1, 7/7, 100%) than did patients with DYT6 (p = 0.047). The responder rates at late follow-up did not differ statistically among the three groups (p = 0.278). The decrease in the dystonia motor scale score in the GNAL group was 46.9% at early follow-up and 63.4% at late follow-up. Conclusion GPi-DBS would be an effective treatment option for dystonia patients with the GNAL mutation who are resistant to medication or botulinum toxin treatment.
- Published
- 2019
26. Ecological status and the spread of false brome in the Andrews Forest, Western Oregon, USA
- Author
-
K. D. Kim
- Subjects
Geography ,geography.geographical_feature_category ,biology ,Habitat ,Ecology ,Brachypodium sylvaticum ,Tributary ,Introduced species ,Experimental forest ,STREAMS ,biology.organism_classification ,Ecology, Evolution, Behavior and Systematics ,Invasive species - Abstract
This objective of this study is to investigate how false brome, Brachypodium sylvaticum newly invasive plant in the Northwest region in USA is distributed and spread at an experimental forest, H.J. Andrews Forest. I checked out the distribution of false brome at diverse habitat including roads, junctions between roads, streams and tributaries from the roads and stream in H.J. Andrews Forest. False brome were distributed along roads and streams in the Andrews Forest, and invaded into interiors between road and stream networks. This study showed that the invasion of false brome can be accelerated by road and streams networks over years and exotic plants like false brome can have a possibility to establish in a conserved area of H.J. Andrews Forest.
- Published
- 2015
- Full Text
- View/download PDF
27. Magnetic anisotropy and magnetodielectric coefficients in Cr2O3 and Fe0.4Cr1.6O3
- Author
-
Gregory P. Carman, David M. Pisani, Kotekar P. Mohanchandra, I. Banerjee, and Hyungsuk K. D. Kim
- Subjects
Materials science ,Condensed matter physics ,Mechanical Engineering ,Doping ,Metals and Alloys ,Crystal structure ,Coercivity ,Condensed Matter::Materials Science ,Magnetic anisotropy ,Magnetization ,Mechanics of Materials ,Condensed Matter::Superconductivity ,Materials Chemistry ,Condensed Matter::Strongly Correlated Electrons ,Multiferroics ,Maxima ,Néel temperature - Abstract
The temperature dependence of magnetization, magnetic anisotropy, coercive field and the magnetodielectric coefficient of Cr2O3 (undoped) and Fe0.4Cr1.6O3 (doped) was experimentally investigated. Test data shows that the presence of Fe ions at the interstitial spaces of the Cr2O3 crystal lattice decreases the Neel Temperature by ∼80 K when compared to the undoped Cr2O3. Also both the doped and undoped samples display maxima in magnetic anisotropy and magnetodielectric coefficient as a function of temperature. The maxima for the Fe doped samples occurs at a temperature approximately 80 K below the temperature measured for the Cr2O3 samples, i.e. similar to the shift observed in the Neel Temperature. These results suggest that Neel Temperature, magnetic anisotropy, and the magnetodielectric coefficients are physically interrelated through competing principal exchange interactions and may provide a useful approach to search for new multiferroic materials.
- Published
- 2014
- Full Text
- View/download PDF
28. A New Color Space Based Constellation Diagram and Modulation Scheme for Color Independent VLC
- Author
-
K.-D. Kim, Y. Park, Pankaz Das, and B.-Y. Kim
- Subjects
Scheme (programming language) ,light color space ,visible light communication ,lcsh:Computer engineering. Computer hardware ,General Computer Science ,constellation diagram ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,Visible light communication ,lcsh:TK7885-7895 ,Color space ,gcm ,Optics ,Electrical and Electronic Engineering ,computer.programming_language ,Computer Science::Information Theory ,Physics ,business.industry ,mapping and demapping ,Constellation diagram ,GCM transcription factors ,Light intensity ,Modulation ,lcsh:Electrical engineering. Electronics. Nuclear engineering ,business ,computer ,lcsh:TK1-9971 - Abstract
In this paper, generation of a constellation diagram, data to light intensity mapping, and light intensity to data demapping are introduced for the visible light communication (VLC) systems. We propose a new constellation diagram and modulation scheme named generalized color modulation (GCM) based on light color space which can be uniquely applied to modulate the light signals used to deliver data information regardless of target colors of VLC signals. At first, we describe the generation of a constellation in a light color space considering the target color of VLC signals. Then we represent the data symbols as constellation points, resulting in every data symbol having a specific position and corresponding color in the light color space. After that, we determine the position of received signal points in the light color space at the receiver by manipulating the intensities of received signals from the photo detectors. Finally, we convert these received points to data symbols by matching them to the constellation points generated by the receiver. We consider both single color and multiple colors scenarios and investigate two cases to obtain the color information at the receiver. Simulation results show that our proposed scheme can be applied to the development of a more efficient VLC system.
- Published
- 2012
29. A biometric study of C-shaped root canal systems in mandibular second molars using cone-beam computed tomography
- Author
-
D.-G. Seo, Y. Gu, Y.-A. Yi, S.-J. Lee, J.-S. Jeong, Y. Lee, S.-W. Chang, J.-K. Lee, W. Park, K.-D. Kim, and K.-Y. Kum
- Subjects
Orthodontics ,Mandibular second molar ,Cone beam computed tomography ,medicine.anatomical_structure ,Biometrics ,business.industry ,Root canal ,C shaped ,medicine ,Dentistry ,business ,General Dentistry - Published
- 2012
- Full Text
- View/download PDF
30. Effect of Sol-Gel Prepared ZnO Electron Selective Layer on the Performance of Inverted Organic Solar Cells
- Author
-
W. H. Shim, M. Y. Park, D. S. Park, Y. T. Kim, S. Y. Park, J.-H. Lim, K. H. Lee, Y. S. Jeong, Y. D. Kim, K.-D. Kim, H. O. Seo, and D. C. Lim
- Subjects
Materials science ,Organic solar cell ,business.industry ,Photovoltaic system ,Energy conversion efficiency ,General Chemistry ,Surface finish ,Condensed Matter Physics ,Optics ,Electrode ,Surface roughness ,Optoelectronics ,General Materials Science ,business ,Layer (electronics) ,Sol-gel - Abstract
ZnO buffer layer was prepared as electron selective layers (ESL) for photo-induced electron transport and hole blocking in inverted organic solar cells (IOSCs) by sol-gel process. The effects of thickness and surface roughness of ZnO ESL on the performance of IOSCs were investigated. Power Conversion Efficiency (PCE) of the IOSC strongly varied as a function of ZnO film thickness and surface roughness, in particular, when the film thickness was
- Published
- 2011
- Full Text
- View/download PDF
31. Local Green Teams
- Author
-
K.-D Kim, J Kelly, C Thomas, and I.-K Song
- Subjects
Engineering ,business.industry ,media_common.quotation_subject ,Energy Engineering and Power Technology ,ComputerApplications_COMPUTERSINOTHERSYSTEMS ,Local community ,Engineering management ,Smart grid ,State (polity) ,Software deployment ,Sustainability ,Electrical and Electronic Engineering ,business ,Simulation ,media_common - Abstract
The Republic of Korea and the State of Illinois are jointly exploring shared opportunities for smart grid development and deployment that can support local community sustainability initiatives and bring the promised benefits to citizens of both Korea and Illinois. In this article, the authors highlight local community sustainability and economic development initiatives in Illinois that can be supported by smart grid systems, and the authors discuss opportunities inherent in the design and verification of the Korea Smart Power Grid for communities planning to implement smart grid solutions.
- Published
- 2011
- Full Text
- View/download PDF
32. An IF–FISH Approach for Covisualization of Gene Loci and Nuclear Architecture in Fission Yeast
- Author
-
O. Iwasaki, Ken-ichi Noma, and K.-D. Kim
- Subjects
0301 basic medicine ,Centromere ,ved/biology.organism_classification_rank.species ,Fluorescent Antibody Technique ,Computational biology ,Genome ,Article ,03 medical and health sciences ,Schizosaccharomyces ,medicine ,Nuclear membrane ,Enhancer ,Model organism ,Gene ,In Situ Hybridization, Fluorescence ,Genomic organization ,Genetics ,biology ,ved/biology ,biology.organism_classification ,030104 developmental biology ,medicine.anatomical_structure ,Genetic Loci ,Chromosomes, Fungal ,Genome, Fungal - Abstract
Recent genomic studies have revealed that chromosomal structures are formed by a hierarchy of organizing processes ranging from gene associations, including interactions among enhancers and promoters, to topologically associating domain formations. Gene associations identified by these studies can be characterized by microscopic analyses. Fission yeast is a model organism, in which gene associations have been broadly mapped across the genome, although many of those associations have not been further examined by cell biological approaches. To address the technically challenging process of the visualization of associating gene loci in the fission yeast nuclei, we provide, in detail, an IF-FISH procedure that allows for covisualizing both gene loci and nuclear structural markers such as the nuclear membrane and nucleolus.
- Published
- 2016
- Full Text
- View/download PDF
33. Comparative Ultrastructure of Cucumbers Pretreated with Plant Growth-promoting Rhizobacteria, DL-3-aminobutyric Acid or Amino Salicylic Acid after Inoculation with Colletotrichum orbiculare
- Author
-
Yong Chull Jeun, K. D. Kim, Ki Woo Kim, and J. W. Hyun
- Subjects
Hyphal growth ,biology ,Hypha ,Physiology ,fungi ,Colletotrichum orbiculare ,food and beverages ,Pseudomonas fluorescens ,Plant Science ,Rhizobacteria ,biology.organism_classification ,Microbiology ,chemistry.chemical_compound ,chemistry ,Genetics ,Agronomy and Crop Science ,Systemic acquired resistance ,Intracellular ,Salicylic acid - Abstract
The infection behaviour of Colletotrichum orbiculare was observed using a transmission electron microscope (TEM) in the leaves of cucumber plants preinoculated with plant growth-promoting rhizobacteria (PGPR) Serratia marcescens (90-166) or Pseudomonas fluorescens (89B61) after inoculation with the anthracnose pathogen. Moreover, the structural defence mechanisms mediated by pretreating DL-3-amino butyric acid or amino salicylic acid was compared with those mediated by these two PGPR. In untreated plants broadly spread intercellular/intracellular hyphae were found in leaf tissues. The cytoplasm of fungal hyphae appeared intact and the electron densities of intercellular and intracellular hyphae were not high even at 5 days after fungal inoculation, indicating lack of defence responses. However, in the leaves of plants preinoculated with both PGPR active defence responses were observed, i.e. sheath formation at penetration sites, and accumulations of endoplasmic reticula or of numerous vesicles around intracellular hyphae. Furthermore, the electron densities of most intracellular and intercellular hyphae were higher than those of untreated control plants. In the leaves of plants pretreated with both chemicals, the hyphae of the pathogen were rarely observed at 5 days after challenge inoculation. Similar to the case of PGPR-pretreated plants, the most intercellular and intracellular hyphae in plant tissues were electron dense. However, no active defence responses were observed in leaf tissues. Moreover, in some cases, hyphal growth was restricted to the epidermal cell layer, and in particular, was not observed to develop in mesophyll cells of the plants. These results suggest that the mechanisms of systemic-ally induced resistance are differently expressed by preinoculating with PGPR or by pretreating with chemicals.
- Published
- 2007
- Full Text
- View/download PDF
34. Clinical Targeted Next-Generation Sequencing Panels for Detection of Somatic Variants in Gliomas.
- Author
-
Hyemi Shin, Jason K. Sa, Joon Seol Bae, Harim Koo, Seonwhee Jin, Hee Jin Cho, Seung Won Choi, Jong Min Kyoung, Ja Yeon Kim, Yun Jee Seo, Je-Gun Joung, Nayoung K. D. Kim, Dae-Soon Son, Jongsuk Chung, Taeseob Lee, Doo-Sik Kong, Jung Won Choi, Ho Jun Seol, Jung-Il Lee, and Yeon-Lim Suh
- Subjects
NUCLEOTIDE sequencing ,FLUORESCENCE in situ hybridization ,GLIOMAS ,SOMATIC mutation ,TUMOR diagnosis ,OLIGODENDROGLIOMAS - Abstract
Purpose Targeted next-generation sequencing (NGS) panels for solid tumors have been useful in clinical framework for accurate tumor diagnosis and identifying essential molecular aberrations. However, most cancer panels have been designed to address a wide spectrum of pan-cancer models, lacking integral prognostic markers that are highly specific to gliomas. Materials and Methods To address such challenges, we have developed a glioma-specific NGS panel, termed "GliomaSCAN," that is capable of capturing single nucleotide variations and insertion/deletion, copy number variation, and selected promoter mutations and structural variations that cover a subset of intron regions in 232 essential glioma-associated genes. We confirmed clinical concordance rate using pairwise comparison of the identified variants from whole exome sequencing (WES), immunohistochemical analysis, and fluorescence in situ hybridization. Results Our panel demonstrated high sensitivity in detecting potential genomic variants that were present in the standard materials. To ensure the accuracy of our targeted sequencing panel, we compared our targeted panel to WES. The comparison results demonstrated a high correlation. Furthermore, we evaluated clinical utility of our panel in 46 glioma patients to assess the detection capacity of potential actionable mutations. Thirty-two patients harbored at least one recurrent somatic mutation in clinically actionable gene. Conclusion We have established a glioma-specific cancer panel. GliomaSCAN highly excelled in capturing somatic variations in terms of both sensitivity and specificity and provided potential clinical implication in facilitating genome-based clinical trials. Our results could provide conceptual advance towards improving the response of genomically guided molecularly targeted therapy in glioma patients. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
35. Adaptive refinement techniques based on tetrahedral and hexahedral grids for finite element analysis of mold filling in casting processes
- Author
-
K. D. Kim, Jun-Ho Jeong, and Dong-Yol Yang
- Subjects
Engineering ,Engineering drawing ,business.industry ,Mechanical Engineering ,Grid method multiplication ,Computational Mechanics ,General Physics and Astronomy ,Grid ,Casting ,Finite element method ,Computer Science Applications ,Computational science ,Mechanics of Materials ,Mesh generation ,Tetrahedron ,Volume of fluid method ,Hexahedron ,business - Abstract
A 3-D finite element model combined with a volume tracking method is presented in this work to simulate the mold filling for casting processes. Especially, the analysis involves an adaptive grid method that is created under a criterion of element categorization of filling states and locations in the total region at each time step. By using an adaptive grid wherein the elements, finer than those in internal and external regions, are distributed at the surface region through refinement and coarsening procedures, a more efficient analysis of transient fluid flow with free surface is achieved. Adaptive grid based on VOF method is developed in tetrahedral and hexahedral elements. Through a 3-D analysis of the benchmark test of the casting process using two types of elements, the efficiency of the proposed adaptive grid method is verified.
- Published
- 2006
- Full Text
- View/download PDF
36. Fabrication of fluorine-doped diamond-like carbon stamps for UV nanoimprint lithography
- Author
-
Ali Ozhan Altun, K D Kim, E S Lee, Dae-Geun Choi, Jun-Ho Jeong, and J J Rha
- Subjects
Fabrication ,Plasma etching ,Materials science ,Diamond-like carbon ,business.industry ,Mechanical Engineering ,Bioengineering ,Nanotechnology ,General Chemistry ,engineering.material ,medicine.disease_cause ,Nanoimprint lithography ,law.invention ,Coating ,Mechanics of Materials ,Etching (microfabrication) ,law ,Transmittance ,engineering ,medicine ,Optoelectronics ,General Materials Science ,Electrical and Electronic Engineering ,business ,Ultraviolet - Abstract
Two fluorine-doped diamond-like carbon (F-DLC) stamps with sub-100 nm line patterns were fabricated using a direct etching method. These were applied successfully to ultraviolet (UV) nanoimprint lithography without requiring an anti-adhesion layer coating. Tests were performed to determine the optimum fluorine concentration for the F-DLC stamps. The ideal stamp material consisted of 25 at.% F-DLC with a contact angle of 85°, UV transmittance of 16.4-26.8%, and hardness of 4.5 GPa. The O(2) plasma etch rate of the DLC was increased considerably by the fluorine doping, making it comparable to the etch rate of polymethyl methacrylate (PMMA). Thus, only PMMA was used as the etch mask in the fabrication of the stamps.
- Published
- 2006
- Full Text
- View/download PDF
37. Design and Development of Fluidized Bed Cleaning System for on Heat Treatment Parts (I) - Design and Development the Experimental Fluidized Bed Cleaner and Experiments on its Cleaning Efficiency
- Author
-
K D Kim and C S Kim
- Subjects
Liquid state ,Waste management ,Fluidized bed ,Chemistry ,Mechanical Engineering ,Engineering (miscellaneous) ,Agricultural and Biological Sciences (miscellaneous) ,Analysis method ,Computer Science Applications - Abstract
This study was conducted to perform for comparative analysis of the cleaning efficiency on 3 kinds of cleaning liquid state, 3 steps of cleaning temperature and 6 steps of cleaning time (2.5, 5, 7.5, 10, 12.5, 15 minute). 3 kinds of cleaning liquid state are the non fluidized bed, liquid fluidized bed and liquid/solid fluidized bed. UV spectrophotometer was used in estimation of cleaning efficiency, which it is experimental equipment using the absorptiometric analysis method. Cleaning efficiency by cleaning time was increase from 2.5 minutes to 15 minutes, liquid/siolid fluidized bed was indicated the highest cleaning efficiency among the 3 kinds of cleaning liquid state and of cleaning temperature at liquid/solid fluidized bed was indicated the highest cleaning efficiency as 98% among the 3 steps of cleaning temperature.
- Published
- 2006
- Full Text
- View/download PDF
38. 2D quantum mechanical device modeling and simulation: Centre-channel (CC) and double-gate (DG) MOSFET
- Author
-
Taeyoung Won and K.-D. Kim
- Subjects
Physics ,business.industry ,General Chemical Engineering ,General Chemistry ,Condensed Matter Physics ,Modeling and simulation ,Continuity equation ,Computational chemistry ,Modeling and Simulation ,MOSFET ,Optoelectronics ,General Materials Science ,Double gate ,business ,Wave function ,Quantum ,Energy (signal processing) ,Information Systems ,Communication channel - Abstract
In this paper, a novel device structure (Si1 − x Ge x /Si/Si1 − x Ge x hetero-structure), which is named as “center-channel (CC) double-gate (DG) MOSFET,” is proposed. Device performance of the proposed FET structure was investigated with our two-dimensional quantum-mechanical simulator which produces a self-consistent solution of Poisson–Schrodinger equations and the current continuity equation. The CC operation of CC-NMOS is confirmed from the electron density distribution and the band lineups as well as the lowest energy wave function. Current–voltage characteristics including the trans-conductance (G m) of CC-MOSFET are carefully compared with those of the conventional DG-NMOS to evaluate the distinct feature of the proposed FET structure. Our simulation revealed that the proposed FET demonstrates the enhanced (about (∼1.6 × ) current drive and 60% G m. Finally, the short-channel effects of CC and DG MOSFET, both of which demonstrate excellent sub-threshold behaviors and open the possibility of device...
- Published
- 2005
- Full Text
- View/download PDF
39. Effects of Aqueous Extracts from Soils in Nonsanitary Waste Landfills on Germination and Seedling Growth of Some Herbaceous Species
- Author
-
K. D. Kim
- Subjects
Health, Toxicology and Mutagenesis ,Germination ,Complex Mixtures ,Toxicology ,Plant Roots ,Magnoliopsida ,Soil ,Species Specificity ,Water Movements ,Soil Pollutants ,Korea ,biology ,General Medicine ,Herbaceous plant ,biology.organism_classification ,Pollution ,Soil contamination ,Refuse Disposal ,Solubility ,Agronomy ,Wastewater ,Seedlings ,Seedling ,Soil water ,Shoot ,Phytotoxicity ,Plant Shoots ,Environmental Monitoring - Published
- 2005
- Full Text
- View/download PDF
40. Real-time compensatory control of thermal errors for high-speed machine tools
- Author
-
S-C Chung, K-D Kim, and M-S Kim
- Subjects
Engineering ,business.product_category ,Temperature control ,Offset (computer science) ,business.industry ,Mechanical Engineering ,Surface finish ,Industrial and Manufacturing Engineering ,Machine tool ,Machining ,Control theory ,Surface roughness ,business ,Error detection and correction ,Infinite impulse response - Abstract
This paper proposes a developmental procedure of a real-time thermal error compensator for a high-speed machine tool (HSMT). A vertical-type HSMT having a slant column with lightweight moving slides is used to investigate thermal characteristics. Since spindle speed is very fast in the HSMT, a large amount of thermal drift error occurs within a few minutes of operation. Owing to tooling problems of the high-speed spindle, axial offset errors also appear on the machined surfaces. If-then rules and thermal mode approaches are applied to remove defects of the machined surfaces. An infinite impulse response filter is used to compensate for surface roughness of the machine surface. A personal-computer-based error compensation scheme has been developed for the real-time thermal error compensation. Compensation interval of the developed compensator is selected to satisfy correction requirement of thermal errors of the HSMT. Experimental results confirm the validity of the developed compensator and show that the accuracy of machined surface is dramatically improved.
- Published
- 2004
- Full Text
- View/download PDF
41. Occurrence of Superconductivity in <font>Ba</font>-Doped <font>NdSr</font>2<font>(Cu,Mo)</font>3<font>O</font>z
- Author
-
H. K. Lee and K. D. Kim
- Subjects
Diffraction ,Superconductivity ,Tetragonal crystal system ,Materials science ,Condensed matter physics ,Electrical resistivity and conductivity ,Seebeck coefficient ,Doping ,Analytical chemistry ,Statistical and Nonlinear Physics ,Crystallite ,Condensed Matter Physics ,Magnetic susceptibility - Abstract
Polycrystalline samples of Nd ( Sr 2-y Ba y)( Cu 3-x Mo x) O z (0 ≤ y ≤ 0.5, 0.1 ≤ x ≤ 0.3) with tetragonal structure were synthesized and investigated by powder X-ray diffraction, electrical resistivity, magnetic susceptibility and thermoelectric power measurements. Contrary to the absence of superconductivity of the Ba-free samples, superconductivity can be achieved by partially substituting Ba for Sr in semiconducting NdSr 2( Cu 3-x Mo x) O z (0.15 ≤ x ≤ 0.3). Thermoelectric power measurements reveal that all the samples are in the underdoped state and the partial substitution of Ba for Sr results in an increase of the carrier density on the superconducting layers.
- Published
- 2003
- Full Text
- View/download PDF
42. A co-rotational 8-node assumed strain shell element for postbuckling analysis of laminated composite plates and shells
- Author
-
Gilson R. Lomboy, K. D. Kim, and Sung-Cheon Han
- Subjects
Materials science ,Applied Mathematics ,Mechanical Engineering ,Shell element ,Composite number ,Computational Mechanics ,Stiffness ,Ocean Engineering ,Viscoelasticity ,Condensed Matter::Soft Condensed Matter ,Physics::Fluid Dynamics ,Computational Mathematics ,Nonlinear system ,Computational Theory and Mathematics ,Shear (geology) ,medicine ,Bending moment ,medicine.symptom ,Composite material ,Resultant force - Abstract
The formulation of a nonlinear composite shell element is presented for the solution of stability problems of composite plates and shells. The formulation of the geometrical stiffness presented here is exactly defined on the midsurface and is efficient for analyzing stability problems of thin and thick laminated plates and shells by incorporating bending moment and transverse shear resultant forces. The composite element is free of both membrane and shear locking behaviour by using the assumed natural strain method such that the element performs very well as thin shells. The transverse shear stiffness is defined by an equilibrium approach instead of using the shear correction factor. The proposed formulation is computationally efficient and the test results showed good agreement. In addition the effect of the viscoelastic material is investigated on the postbuckling behaviour of laminated composite shells.
- Published
- 2003
- Full Text
- View/download PDF
43. A 4-node assumed strain quasi-conforming shell element with 6 degrees of freedom
- Author
-
K. D. Kim, George Z. Voyiadjis, and Gilson R. Lomboy
- Subjects
Numerical Analysis ,Engineering ,business.industry ,Applied Mathematics ,Mathematical analysis ,Gauss ,General Engineering ,Extrapolation ,Shell (structure) ,Bending ,Structural engineering ,Degrees of freedom (mechanics) ,Cardinal point ,Node (circuits) ,Element (category theory) ,business - Abstract
SUMMARY Quasi-conforming formulations of 4-node stress-resultant shell elements are presented. The element formulations use interrelated displacement-rotation interpolations. The formulation also includes drilling degrees of freedom, which improves membrane behavior and allows the modeling of stiened plates and shells. The proposed treatment for bending provides very good results in the 4-node shell element. The stiness matrices for the present elements are explicitly expressed and the stresses are taken accurately at the nodal points. Compared to elements using Gauss integration, where the stresses are most accurate at the integration points, the extrapolation procedure needed for post-processing is eliminated in the present shell element. A lot of numerical tests were carried out for the validation of the present 4-node shell element and the results are in good agreement with references. Copyright ? 2003 John Wiley & Sons, Ltd.
- Published
- 2003
- Full Text
- View/download PDF
44. Plant invasion and management in turf-dominated waste landfills in South Korea
- Author
-
K. D. Kim
- Subjects
chemistry.chemical_classification ,biology ,Setaria viridis ,Ecology ,Soil organic matter ,Soil Science ,Digitaria sanguinalis ,Introduced species ,Development ,Native plant ,biology.organism_classification ,Invasive species ,Detrended correspondence analysis ,Agronomy ,chemistry ,Environmental Chemistry ,Environmental science ,Organic matter ,General Environmental Science - Abstract
A floristic survey was conducted in turf-dominated fields on some waste landfills in South Korea, to quantify the degree of plant invasion in those degraded lands. The dominant species, except turf (Zoysia japonica), were Conyza canadensis, Setaria viridis, Digitaria sanguinalis and Aster tripolium. Mean species number declined linearly with distance from the edge of the turf stands. Biomass of each species ranged between 0.1 g and 122.6 g, decreasing linearly with distance from the edge of the stand and declining exponentially with turf coverage. Mean soil moisture storage and organic matter content were 12.59 per cent and 5.81 per cent, respectively. Sum of relative cover, frequency and biomass of all species with environmental variables (distance from the stand edge, turf cover, soil moisture storage, soil organic matter content and the ratio of species number of exotic plants to that of native plants) were ordinated by DCA (detrended correspondence analysis). The first axis of the DCA was positively correlated with distance from the stand edge and turf cover and the second axis of the DCA was negatively correlated with soil organic matter content. Highly and lowly invasive species were indicated from DCA results. From analysis of dispersal type, barochore and anemochore were the most widespread of other dispersal types but it was suggested that anthropochore played an important role in plant invasion in these degraded wastelands. Establishment of an edge transition zone, enhancement of turf cover and reduction in traffic is recommended as management options for turf fields. Copyright © 2002 John Wiley & Sons, Ltd.
- Published
- 2002
- Full Text
- View/download PDF
45. Atypical hemolytic uremic syndrome: Korean pediatric series
- Author
-
Jiwon M, Lee, Young Seo, Park, Joo Hoon, Lee, Se Jin, Park, Jae Il, Shin, Yong-Hoon, Park, Kee Hwan, Yoo, Min Hyun, Cho, Su-Young, Kim, Seong Heon, Kim, Mee Kyung, Namgoong, Seung Joo, Lee, Jun Ho, Lee, Hee Yeon, Cho, Kyoung Hee, Han, Hee Gyung, Kang, Il Soo, Ha, Jun-Seok, Bae, Nayoung K D, Kim, Woong-Yang, Park, and Hae Il, Cheong
- Subjects
Male ,Incidence ,Infant ,Gene Frequency ,Child, Preschool ,Complement Factor H ,Mutation ,Republic of Korea ,Humans ,Female ,Genetic Predisposition to Disease ,Child ,Multiplex Polymerase Chain Reaction ,Atypical Hemolytic Uremic Syndrome ,Autoantibodies - Abstract
Atypical hemolytic uremic syndrome (aHUS) is a rare disease with a genetic predisposition. Few studies have evaluated the disease in the Asian population. We studied a Korean pediatric cohort to delineate the clinical characteristics and genotypes.A multicenter cohort of 51 Korean children with aHUS was screened for mutations using targeted exome sequencing covering 46 complement related genes. Anti-complement-factor-H autoantibody (anti-CFH) titers were measured. Multiplex ligation-dependent probe amplification assay was performed to detect deletions in the complement factor-H related protein genes (CFHR) in the patients as well as in 100 healthy Korean controls. We grouped the patients according to etiology and compared the clinical features using Mann-Whitney U-test and chi-squared test.Fifteen patients (group A, 29.7%) had anti-CFH, and mutations were detected in 11 (group B, 21.6%), including one with combined mutations. The remaining 25 (group C, 49.0%) were negative for both. The prevalence of anti-CFH was higher than the worldwide level. Group A had a higher onset age than group B, although the difference was not significant. Group B had the worst renal outcome. Gene frequencies of homozygous CFHR1 deletion were 73.3%, 2.7% and 1% in group A, group B + C and the control, respectively.The incidence of anti-CFH in the present Korean aHUS cohort was high. Clinical outcomes largely conformed to the previous reports. Although the sample size was limited, this cohort provides a reassessment of clinicogenetic features of aHUS in Korean children.
- Published
- 2014
46. Effects of dietary protein and energy levels on the growth, protein utilization and body composition of juvenile masu salmon (Oncorhynchus masouBrevoort)
- Author
-
S. M. Lee and K. D. Kim
- Subjects
food.ingredient ,Protein efficiency ratio ,Linoleic acid ,Aquatic Science ,Biology ,Eicosapentaenoic acid ,Feed conversion ratio ,Soybean oil ,chemistry.chemical_compound ,food ,chemistry ,medicine ,Food science ,Docosapentaenoic acid ,medicine.symptom ,Weight gain ,Protein sparing - Abstract
A feeding trial of three dietary protein levels (30, 40 and 50%) and two dietary energy levels (19 and 21 MJ kg−1 diet) factorial design with three replications was conducted to investigate the proper dietary protein and energy levels for the growth of juvenile masu salmon (Oncorhynchus masou Brevoort). Fish, average weight 21.9 g, were fed the experimental diets for 10 weeks. Weight gain and feed efficiency ratio of fish improved as dietary protein and energy levels increased (P
- Published
- 2001
- Full Text
- View/download PDF
47. Estimation of confidence intervals of quantiles for the Weibull distribution
- Author
-
Jose D. Salas, K.-D. Kim, and Jun Haeng Heo
- Subjects
education.field_of_study ,Environmental Engineering ,Population ,Confidence interval ,Robust confidence intervals ,Sample size determination ,Statistics ,Confidence distribution ,Environmental Chemistry ,Safety, Risk, Reliability and Quality ,education ,CDF-based nonparametric confidence interval ,General Environmental Science ,Water Science and Technology ,Weibull distribution ,Mathematics ,Quantile - Abstract
Estimation of confidence limits and intervals for the two- and three-parameter Weibull distributions are presented based on the methods of moment (MOM), probability weighted moments (PWM), and maximum likelihood (ML). The asymptotic variances of the MOM, PWM, and ML quantile estimators are derived as a function of the sample size, return period, and parameters. Such variances can be used for estimating the confidence limits and confidence intervals of the population quantiles. Except for the two-parameter Weibull model, the formulas obtained do not have simple forms but can be evaluated numerically. Simulation experiments were performed to verify the applicability of the derived confidence intervals of quantiles. The results show that overall, the ML method for estimating the confidence limits performs better than the other two methods in terms of bias and mean square error. This is specially so for γ≥0.5 even for small sample sizes (e.g. N=10). However, the drawback of the ML method for determining the confidence limits is that it requires that the shape parameter be bigger than 2. The Weibull model based on the MOM, ML, and PWM estimation methods was applied to fit the distribution of annual 7-day low flows and 6-h maximum annual rainfall data. The results showed that the differences in the estimated quantiles based on the three methods are not large, generally are less than 10%. However, the differences between the confidence limits and confidence intervals obtained by the three estimation methods may be more significant. For instance, for the 7-day low flows the ratio between the estimated confidence interval to the estimated quantile based on ML is about 17% for T≥2 while it is about 30% for estimation based on MOM and PWM methods. In addition, the analysis of the rainfall data using the three-parameter Weibull showed that while ML parameters can be estimated, the corresponding confidence limits and intervals could not be found because the shape parameter was smaller than 2.
- Published
- 2001
- Full Text
- View/download PDF
48. Toxic culture filtrates produced byCalonectria ilicicola, causal agent of red crown rot of soybean
- Author
-
J. S. Russin, J. P. Snow, K. E. Damann, and K. D. Kim
- Subjects
Toxin ,Crown (botany) ,food and beverages ,Virulence ,Wilting ,Plant Science ,Biology ,medicine.disease_cause ,Microbiology ,Horticulture ,Insect Science ,medicine ,Cultivar ,Incubation ,Volume concentration ,Fungal isolate - Abstract
Eleven soybean cultivars with different levels of susceptibility to virulent isolate SG915 ofCalonectria ilicicola were examined for reaction to metabolites produced by the isolate. When the culture filtrate from isolate SG915 was applied to trifoliates from 11 cultivars, cvs. ‘Cajun’ and ‘Asgrow 7986’ exhibited reduced wilting severity. However, there was no correlation between sensitivity to culture filtrate and susceptibility to the fungal isolate. Wilting severity on cv. ‘Riverside 699’ was greatest when trifoliates were treated with culture filtrates from isolates SG915 (highly virulent) and C31 (less virulent). The dilution end-point for culture filtrates of virulent isolate SG915 was determined to be 1:8. Nonautoclaved culture filtrates caused complete wilt of soybean trifoliates after 36 h, but autoclaved culture filtrates demonstrated a reduced ability to wilt leaves. Electrolyte leakage from treated leaf tissues increased over time regardless of the concentrations of culture filtrate tested. The greatest electrolyte losses were observed during the initial 30 min incubation of leaf tissues. The highest concentration of culture filtrate (50%, v/v) induced more electrolyte loss than the low concentration (10%, v/v) or control. These results suggest that toxic metabolites ofC. ilicicola may be involved in disease development with leaf symptom expression.
- Published
- 2001
- Full Text
- View/download PDF
49. Effect of Cuticular Wax Layers of Green and Red Pepper Fruits on Infection by Colletotrichum gloeosporioides
- Author
-
B. J. Oh, K. D. Kim, and Y. S. Kim
- Subjects
Physiology ,Genetics ,Plant Science ,Agronomy and Crop Science - Published
- 1999
- Full Text
- View/download PDF
50. Differential Interactions of aColletotrichum gloeosporioides isolate with green and red pepper fruits
- Author
-
B. J. Oh, J. Yang, and K. D. Kim
- Subjects
Appressorium ,Wax ,Inoculation ,food and beverages ,Plant Science ,Fungus ,Biology ,biology.organism_classification ,Glomerella cingulata ,Conidium ,Germination ,Insect Science ,visual_art ,Botany ,Pepper ,visual_art.visual_art_medium - Abstract
Differential interactions ofColletotrichum gloeosporioides isolate KG 13 with green and red pepper fruits (Capsicum annuum were found when it was inoculated on unwounded and wounded fruits. The isolate produced the typically necrotic, sunken anthracnose symptom on unwounded and wounded green fruits, and wounded red ones, but not on unwounded red ones. Appressorial formation of the fungus on the surfaces of compatible green fruits was higher than on incompatible red ones up to 12 h after inoculation. More and longer infection pegs from appressoria were produced on green than on red fruits. When cuticular wax layers of green and red fruits were removed by dipping in chloroform, red ones only produced larger lesions and more conidia than water-dipped controls did. However, differences in lesion diameter and conidial production were not observed between green and red fruits wounded by pin-pricking. In addition, concentrations of wax extracted from the surface of green and red fruits affected conidial germination and appressorial formation of the fungus. These findings suggest that the isolate KG 13 ofC. gloeosporioides may react differentially to green and red pepper fruits, probably due to the physical and chemical differences in cuticular layers of the fruits.
- Published
- 1999
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.