1. Complete Genome Sequences of Seven Vibrio anguillarum Strains as Derived from PacBio Sequencing
- Author
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Jenny Johansson Söderberg, Peik Haugen, Cecilie Bækkedal, and Kåre Olav Holm
- Subjects
0301 basic medicine ,Vibrio anguillarum ,Letter ,030106 microbiology ,Virulence ,VDP::Mathematics and natural science: 400::Basic biosciences: 470::Bioinformatics: 475 ,Computational biology ,Biology ,Genome ,03 medical and health sciences ,IS-elements ,Genetic variation ,Genetics ,Insertion sequence ,Ecology, Evolution, Behavior and Systematics ,Vibrio ,chromosomal integrons ,PacBio sequencing ,Whole Genome Sequencing ,High-Throughput Nucleotide Sequencing ,Pan-genome ,Chromosome ,Molecular Sequence Annotation ,Sequence Analysis, DNA ,Integrases ,biology.organism_classification ,insertion sequences ,VDP::Matematikk og Naturvitenskap: 400::Basale biofag: 470::Bioinformatikk: 475 ,030104 developmental biology ,DNA Transposable Elements ,integrases ,Genome, Bacterial - Abstract
Supplementary data available. We report here the complete genome sequences of seven Vibrio anguillarum strains isolated from multiple geographic locations, thus increasing the total number of genomes of finished quality to 11. The genomes were de novo assembled from long-sequence PacBio reads. Including draft genomes, a total of 44 V. anguillarum genomes are currently available in the genome databases. They represent an important resource in the study of, for example, genetic variations and for identifying virulence determinants. In this article, we present the genomes and basic genome comparisons of the 11 complete genomes, including a BRIG analysis, and pan genome calculation. We also describe some structural features of superintegrons on chromosome 2 s, and associated insertion sequence (IS) elements, including 18 new ISs (ISVa3 − ISVa20), both of importance in the complement of V. anguillarum genomes.
- Published
- 2018