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Since 2020, synchrotron radiation facilities in several Asia-Pacific countries have been collaborating in a major project called "SYNAPSE"(Synchrotrons for Neuroscience: an Asia-Pacific Scientific Enterprise). They use x-ray imaging to attack in a coordinated fashion one of the major issues in modern science: the structure of animal and human brains, including neurons and connections. The objective is to develop Google-like maps also including detailed structural and functional information for selected regions of interest. The sheer mass of data needed for the objective poses huge problems for the acquisition, processing, storage and use of images. In order to complete the task within a reasonable time, the key element of the SYNAPSE strategy is the parallel and coordinated work of several facilities on the same specimens. This article reviews different aspects of the enterprise, including the foundations of synchrotron radiation, coherence and of its role in advanced imaging, electron accelerators, x-ray optics and detectors. This will provide the foundation for an extensive presentation of the different components of SYNAPSE, with an overview of results already obtained within the consortium.

Spatiotemporal pH monitoring of single living cells across rigid cell and organelle membranes has been challenging, despite its significance in understanding cellular heterogeneity. Here, we developed a mechanically robust yet tolerably thin nanowire waveguide that enables in situ monitoring of pH dynamics at desired cellular compartments via direct optical communication. By chemically labeling fluorescein at one end of a poly(vinylbenzyl azide) nanowire, we continuously monitored pH variations of different compartments inside a living cell, successfully observing organelle-exclusive pH homeostasis and stimuli-selective pH regulations. Importantly, it was demonstrated for the first time that, during the mammalian cell cycle, the nucleus displays pH homeostasis in interphase but a tidal pH curve in the mitotic phase, implying the existence of independent pH-regulating activities by the nuclear envelope. The rapid and accurate local pH-reporting capability of our nanowire waveguide would be highly valuable for investigating cellular behaviors under diverse biological situations in living cells.

Mapping the large neural networks of animal and human brains is a fundamental but so far elusive task, because of the massive amount of data and the consequent prohibitively long image taking and processing times. We developed an effective strategy called “AXON” (Accelerated X-ray Observation of Neurons) to solve this problem. AXON can achieve comprehensive whole-brain mapping within a reasonable time by combining fast image taking and processing, plus two other critical performances: three-dimensional (3D) imaging with high and isotropic spatial resolution, and multi-scale resolution. We successfully tested this strategy with coordinated experiments at four synchrotron facilities in Japan, Taiwan, Singapore and Korea on two animal models, Drosophila and mouse. Its performances notably allowed full 3D mapping of the Drosophila brain in a few days. With reasonable improvements, AXON can deliver full mapping of large animal and human brains on a realistic time scale of a few years.

We elucidate the evolution of the entrained air in drop impact on a wide range of liquids, using ultrafast X-ray phase-contrast imaging. We elaborate the retraction mechanism of the entrapped air film in terms of liquid viscosity. We found the criterion for deciding if the entrapped air evolves into single or double bubbles, as determined by competition among inertia, capillarity, and viscosity. Low viscosity and low surface tension induce a small daughter droplet encapsulated by a larger air shell bubble, forming an antibubble. We demonstrate a phase diagram for air evolution regarding hydrodynamics.

The direct optical wiring (DOW) technology which is based on the 3D writing of optically transparent polymer wires using a meniscus-guided method is employed to develop multi-mode optical interconnects for VCSEL-MMF applications. This DOW method, similar in concept to conventional electrical wire bonding, does not require any chemical reactions. DOW bonding is used to optically connect high-speed VCSELs and standard OM3 multi-mode fibers (MMFs). The resulting simplified lens-free transmitter modules show a high coupling efficiency (65%) and 12 Gbit/sec error-free transmission per-channel, which is satisfactory for optical HDMI 2.1 applications. In the presentation, the 4K-60Hz performance transmitted through the HDMI2.1 will be demonstrated and extended single-mode results introduced. We believe that DOW bonding can be a powerful platform technology for optical interconnect and photonic integration for innovative industrial and academic photonic applications.

When a liquid drop impacts on a heated substrate, it can remain deposited, or violently boil in contact, or lift off with or without ever touching the surface. The latter is known as the Leidenfrost effect. The duration and area of the liquid--substrate contact is highly relevant for the heat transfer, as well as other effects such as corrosion. However, most experimental studies rely on side view imaging to determine contact times, and those are often mixed with the time until the drop lifts off from the substrate. Here, we develop and validate a reliable method of contact time determination using high-speed X-ray and Total Internal Reflection measurements. We exemplarily compare contact and lift-off times on flat silicon and sapphire substrates. We show that drops can rebound even without formation of a complete vapor layer, with a wide range of lift-off times. On sapphire, we find a local minimum of lift-off times much shorter than by capillary rebound in the comparatively low-temperature regime of transition boiling / thermal atomization. We elucidate the underlying mechanism related to spontaneous rupture of the lamella and receding of the contact area., S. H. Lee and K. Harth contributed equally to this work

Microbubbles have been used as a soft template to produce hollow structures for diverse applications in chemistry, materials science, and biomedicine. It is a challenge, however, to control their size and position at single-entity level. We report on an on-demand method to produce and place a single microbubble with programmed size and position. The method exploits scanning an electrolyte-filled micropipette to place a hydrogen (H2) bubble, generated by water electrolysis, on the desired position. The bubble growth is self-limited after the bubble size fits to the pipet aperture, yielding well-controlled bubble size. The bubble growth dynamics within the pipet is successfully investigated by a methodology that combines phase-contrast X-ray imaging and electric-current measurement. We show that the microbubbles, accurately controlled in size and position, can be used for the fabrication of various polypyrrole microcontainer arrays. We expect the scanning-pipet strategy could be generalized for manipulating...

Highly stretchable polymer composite microtubes of poly(methyl methacrylate)/polypyrrole (PMMA/PPy) were produced as a microarch shape by a meniscus-guided approach using colloidal solutions of the composite polymers. The polymer composite (PMMA/PPy) microarches show high stretchability up to 80% maintaining the electrical properties. Moreover, the microarches endure repeated stretching over 10 4 ( 9 × 10 2 ) cycles at 20% (80%) stretching without degradation of the electrical properties. The stretchable PMMA/PPy microtube arches are demonstrated as gas sensors with persistent sensitivities and response (recovery) times up to 80% stretching for various NH 3 concentrations. These robust properties of the stretchable PMMA/PPy microtube arch sensors can be suitable for portable sensing devices operating under extreme stretching conductions to be used in research laboratories and chemical processing industries for chemical leak detection and environmental monitoring.

Bulk AlN crystals grown by sublimation on SiC substrates exhibit relatively high dislocation densities. The kind of defect formation at early growth stages influences the structural quality of the grown crystals. In this work, the dislocation distribution near to the interface is understood through investigation of thin (≤1.5 mm) continuous (non-cracked) freestanding crystals obtained in one process with the evaporation of the substrates. The AlN specimens were characterized using synchrotron radiation imaging techniques. We revealed by triple-axis X-ray diffraction study that, near to the former interface, randomly distributed dislocations configured to form boundaries between $$\sim $$ 0.02 $$^{\circ }$$ misoriented sub-grains (from [0001] direction). Threading dislocation structure similar to that in epitaxial GaN films was not detected. To explain these observations, a theoretical model of misfit stress relaxation near the interface is suggested.

The physical vapor transport growth of aluminium nitride (AlN) layers was performed in one process with the evaporation of silicon carbide (SiC) substrates. In this paper, we show that the rate of SiC evaporation is slow in a narrow process window for AlN growth but increases in the presence of AlN vapor. The properties of the substrates influence the evaporation process; therefore an investigation is done to understand this phenomenon. We first describe the evaporation behavior of a SiC substrate depending on its size, thickness, structure and polarity. Then we demonstrate the surface morphology and structural quality of the AlN layers grown on C-polar SiC. In the case of a step-flow growth, our method allows us to obtain thin freestanding layers with moderate dislocation densities and rocking curve widths comparable to those of bulk crystals.

Dynamic wetting behaviors on soft solids are important to interpret complex biological processes from cell-substrate interactions. Despite intensive research studies over the past half-century, the underlying mechanisms of spreading behaviors are not clearly understood. The most interesting feature of wetting on soft matter is the formation of a "wetting ridge", a surface deformation by a competition between elasticity and capillarity. Dynamics of the wetting ridge formed at the three-phase contact line underlies the dynamic wetting behaviors, but remains largely unexplored mostly due to limitations in indirect observation. Here, we directly visualize wetting ridge dynamics during continuous- and stick-slip motions on a viscoelastic surface using X-ray microscopy. Strikingly, we discover that the ridge spreads spontaneously during stick and triggers contact line depinning (stick-to-slip transition) by changing the ridge geometry which weakens the contact line pinning. Finally, we clarify 'viscoelastic-braking', 'stick-slipping', and 'stick-breaking' spreading behaviors through the ridge dynamics. In stick-breaking, no ridge-spreading occurs and contact line pinning (hysteresis) is enhanced by cusp-bending while preserving a microscopic equilibrium at the ridge tip. We have furthered the understanding of spreading behaviors on soft solids and demonstrated the value of X-ray microscopy in elucidating various dynamic wetting behaviors on soft solids as well as puzzling biological issues.

The morphology of a macrodefect in a single-crystal silicon carbide wafer has been investigated by the computer simulation of an experimental X-ray phase-contrast image. A micropipe, i.e., a long cavity with a small (elliptical in the general case) cross section, in a single crystal has been considered as a macrodefect. A far-field image of micropipe has been measured with the aid of synchrotron radiation without a monochromator. The parameters of micropipe elliptical cross section are determined based on one projection in two directions: parallel and perpendicular to the X-ray beam propagation direction, when scanning along the pipe axis. The results demonstrate the efficiency of the phase contrast method supplemented with computer simulation for studying such macrodefects when the defect position in the sample volume is unknown beforehand.

Quantitative probing of Cu(2+) ions naturally present in single living cells is realized by developing a quantum-dot-embedded nanowire-waveguide probe. The intracellular Cu(2+) ion concentration is quantified by direct monitoring of photoluminescence quenching during the insertion of the nanowire in a living neuron. The measured intracellular Cu(2+) ion concentration is 3.34 ± 1.04 × 10(-6) m (mean ± s.e.m.) in single hippocampal neurons.

Transient dynamics of a Leidenfrost vapor layer in drop impact is studied using x-ray imaging. It is shown that a vapor disk first forms, growing in thickness, following Fourier's law. At a certain thickness, ripples generate near the edge and propagate to the center by capillary waves, improving evaporation.

The characteristics of synchrotron X-ray sources--quite different from those of conventional sources--are exploited by several new imaging techniques. These techniques expand the capabilities of conventional radiology and find interesting application in special cases. We briefly review the basic principle, applications and limitations of the most important of them: monochromatic mammography, two-wavelength digital subtraction angiography, phase-contrast/edge-enhancement imaging, diffraction-enhanced imaging and microtomography.

The optical glow of ceramics that becomes established during the constant state of flash, known as Stage III in flash sintering experiments, is investigated. The specimen temperature in this state is obtained from in situ experiments at the Pohang Light Source II. The measurements of the specimen temperature agree very well with the predictions from the black body radiation model. The optical emission spectrum from the specimen is measured from the visible into the deep infrared, and compared with black body radiation that would have been expected from Joule heating. It is concluded that the specimens radiate by electroluminescence, which is ascribed to electron–hole recombination of excitons. The phenomenon is likely the same as discovered by Nernst at the turn of the twentieth century.

The dendritic planarity of Purkinje cells is critical for cerebellar circuit formation. In the absence of Crk and CrkL, the Reelin pathway does not function resulting in partial Purkinje cell migration and defective dendritogenesis. However, the relationships among Purkinje cell migration, dendritic development and Reelin signaling have not been clearly delineated. Here, we use synchrotron X-ray microscopy to obtain 3-D images of Golgi-stained Purkinje cell dendrites. Purkinje cells that failed to migrate completely exhibited conical dendrites with abnormal 3-D arborization and reduced dendritic complexity. Furthermore, their spines were fewer in number with a distorted morphology. In contrast, Purkinje cells that migrated successfully displayed planar dendritic and spine morphologies similar to normal cells, despite reduced dendritic complexity. These results indicate that, during cerebellar formation, Purkinje cells migrate into an environment that supports development of dendritic planarity and spine formation. While Reelin signaling is important for the migration process, it does not make a direct major contribution to dendrite formation. Electronic supplementary material The online version of this article (doi:10.1007/s00429-014-0780-2) contains supplementary material, which is available to authorized users.

We report for the first time single nanowires (NWs) with ambipolar (positive/negative) photoresponse that changes sign depending on the illumination wavelength. The single NWs were grown by the meniscus-guided method using inorganic (ZnO nanoparticles)-organic (PEDOT:PSS) hybrid materials. The ambipolar photoresponse of the single NWs enabled us to develop an unprecedented spectrum-discriminating NW photodetector array.

Quantitative probing of the Cu(2+) ions naturally present in single living cells is accomplished by a probe made from a quantum-dot-embedded-nanowire waveguide. After inserting the active nanowire-based waveguide probe into single living cells, J. H. Je and co-workers directly observe photoluminescence (PL) quenching of the embedded quantum dots by the Cu(2+) ions diffused into the probe as described on page 4071. This results in quantitative measurement of intracellular Cu(2+) ions.

The fountain pen approach, as a means for transferring materials to substrates, has shown numerous incarnations in recent years for creating 2D micro/nanopatterns and even generating 3D free-form nanostructures using a variety of material “inks”. While the idea of filled reservoirs used to deliver material to a substrate via a capillary remains unchanged since antiquity, the advent of precise micromanipulation systems and functional material “inks” allows the extension of this mechanism to more high-tech applications. Herein, the recent growth in meniscus guided fountain pen approaches for benchtop micro/nanofabrication, which has occurred in the last decade, is discussed. Particular attention is given to the theory, equipment, and experimentation encompassing this unique direct writing approach. A detailed exploration of the diverse ink systems and functional device applications borne from this strategy is put forth to reveal its rapid expansion to a broad range of scientific and engineering disciplines. As such, this informative review is provided for researchers considering adoption of this recent advancement of a familiar technology.

Colloids (colloidal particles or nanoparticles) and their in-situ characterizations are important topics in colloid and interface science. In-situ visualization of colloids with X-ray microscopy is a growing frontier. Here, after a brief introduction on the method, we focus on its application for identifying nanoscale wettability of colloidal particles at fluid interfaces, which is a critical factor in colloidal self-assembly. We discuss a quantitative study on colloidal wettability with two microscopic methods: (i) X-ray microscopy by visualizing natural oil–water interfaces and (ii) confocal microscopy by visualizing fluorescently-labeled interfaces. Both methods show consistent estimation results in colloid–fluid interfacial tensions. This comparison strongly suggests a feasibility of X-ray microscopy as a promising in-situ protocol in colloid research, without fluorescent staining. Finally, we address a prospect of X-ray imaging for colloid and interface science.

We propose a theoretical explanation for the experimentally observed feature in phase contrast images of micropipes in silicon carbide in a white synchrotron radiation (SR) beam, which consists in the fact that the contrast of various micropipes or various regions of the same micropipe is of different colors. The contrast is most often white (the intensity is higher than the background) at the center and black at the edges; however, the sign sometimes changes, and the contrast becomes black at the center and white at the edges. We discuss the results of experiments performed at the SR source in Pohang, Republic of Korea. The cause of the contrast change can be a change in the angle between the micropipe axis and the SR beam direction. At not overly small angles, the phase progression in a section of the micropipe is small and the contrast is standard. If the angle becomes very small, the size of the longitudinal section of the micropipe by the beam increases, which leads to wave field oscillations in the region of the section. At large distances in the white beam, these oscillations are averaged, and averaging results in black contrast.

It has been generally accepted that any reaction between micropipes in silicon carbide (SiC) crystals requires a direct contact of the micropipes. We propose a new model of contact-free reactions that are realized through the emission and absorption of full-core dislocations by micropipes. This model can explain the correlated reduction in micropipe radii in the samples with low micropipe densities which has been observed in synchrotron radiation (SR) phase contrast images supported by computer simulations. We provide a theoretical description of a contact-free reaction between two parallel micropipes.

An interesting feature in phase-contrast images of micropipes in silicon carbide in white synchrotron radiation beam was experimentally studied and theoretically explained. This feature consists in that a change in micropipe cross-section sizes does not lead to changes in its image sizes, but has an effect only on the contrast. The experiment was performed on the synchrotron radiation source in Pohang, South Korea. On the one hand, this effect is explained by a small phase progression caused by the micropipe, and, on the other hand, by satisfying the conditions for Fraunhofer diffraction, when the transverse micropipe size is smaller than the first Fresnel zone diameter. As a rule, the near-field conditions are satisfied in X-ray optics when only object edges are imaged. However, micropipes are so small that the standard edge theory is inapplicable. A universal intensity distribution profile was obtained for micropipes with very small cross sections.

Sliced SiC boule grown by physical vapor transport is investigated using synchrotron white beam phase contrast imaging combined with Bragg diffraction. The evolution of defects is revealed. In the early growth stage, foreign polytype inclusions not only induce massive generation of full-core dislocations and dislocated micropipes but also attract them, forming slit-type pores at the boundaries of inclusions. In the intermediate stage, when inclusions stop to grow and become overgrown by the matrix, the pore density significantly reduces, which is attributed to their transformation into new micropipes. In the later stage, the micropipe density decreases, providing evidence for their partial annihilation and healing. Mechanisms for the evolution from inclusions to pores and finally to micropipes during the crystal growth are further discussed.

Heteroepitaxial ZnO films were grown by pulsed laser deposition on various substrates such as GaN-buffered C-Al 2 O 3 , C-Al 2 O 3 , A-Al 2 O 3 , and R-Al 2 O 3 . The epitaxy nature of the films was investigated mainly by synchrotron X-ray diffraction. The results showed that the GaN interlayer plays a positive role in growing an unstrained, well-aligned epitaxial ZnO film on the basal plane of Al 2 O 3 . Importantly, the ZnO film grown on R-Al 2 O 3 has two differently aligned domains. The dominant (1 1 0) oriented domain has much better alignment in the in-plane direction than the minor portion of (0 0 1) oriented domain, while in the out-of-plane direction the two domains have almost the same mosaic distribution.