Wieland Meyer, Laurence Delhaes, Nausicaa Gantois, Michael Arabatzis, Duong Vu, Mauro de Medeiros Muniz, Françoise Dromer, Maria Lucia Taylor, Josep Guarro, Alejandra Giraldo, Rosely Maria Zancopé-Oliveira, Walter Gams, Dea Garcia-Hermoso, Marcelo R. S. Briones, Analy Salles de Azevedo Melo, Aristea Velegraki, Stéphane Ranque, Sharon C.-A. Chen, Conchita Toriello, Carole Cassagne, Célia Pais, Célia Maria de Almeida Soares, Arnaldo Lopes Colombo, Marie Desnos-Ollivier, Fanrong Kong, Laszlo Irinyi, Annie Ying Sun, Catriona Halliday, Shu Yao Duan, David Ellis, Juliana Alves Parente Rocha, Laura Rosio Castañón-Olivares, José F. Cano-Lira, Carolina Serena, Marcelo Sandoval-Denis, Paula Sampaio, Sybren de Hoog, Gianluigi Cardinali, Françoise Botterel, Ian Arthur, Renaud Piarroux, Anne-Cécile Normand, Zuotao Zhao, Vincent Robert, Aziza Khan, Renata C. Ferreira, Conrad L. Schoch, Xianyu Zeng, Charles Mary, Karina Bellinghausen Merseguel, Barbara Robbertse, Daniel Estrada-Bárcenas, Dirk Stubbe, Keith Cássia da Cunha, Angela Satie Nishikaku, Marijke Hendrickx, Tania C. Sorrell, [et al.], and Universidade do Minho
Human and animal fungal pathogens are a growing threat worldwide leading to emerging infections and creating new risks for established ones. There is a growing need for a rapid and accurate identification of pathogens to enable early diagnosis and targeted antifungal therapy. Morphological and biochemical identification methods are time-consuming and require trained experts. Alternatively, molecular methods, such as DNA barcoding, a powerful and easy tool for rapid monophasic identification, offer a practical approach for species identification and less demanding in terms of taxonomical expertise. However, its wide-spread use is still limited by a lack of quality-controlled reference databases and the evolving recognition and definition of new fungal species/complexes. An international consortium of medical mycology laboratories was formed aiming to establish a quality controlled ITS database under the umbrella of the ISHAM working group on "DNA barcoding of human and animal pathogenic fungi." A new database, containing 2800 ITS sequences representing 421 fungal species, providing the medical community with a freely accessible tool at http://www.isham.org and http://its.mycologylab.org/ to rapidly and reliably identify most agents of mycoses, was established. The generated sequences included in the new database were used to evaluate the variation and overall utility of the ITS region for the identification of pathogenic fungi at intra-and interspecies level. The average intraspecies variation ranged from 0 to 2.25%. This highlighted selected pathogenic fungal species, such as the dermatophytes and emerging yeast, for which additional molecular methods/genetic markers are required for their reliable identification from clinical and veterinary specimens., This study was supported by an National Health and Medical Research Council of Australia (NH&MRC) grant [#APP1031952] to W Meyer, S Chen, V Robert, and D Ellis; CNPq [350338/2000-0] and FAPERJ [E-26/103.157/2011] grants to RM Zancope-Oliveira; CNPq [308011/2010-4] and FAPESP [2007/08575-1] Fundacao de Amparo Pesquisa do Estado de So Paulo (FAPESP) grants to AL Colombo; PEst-OE/BIA/UI4050/2014 from Fundacao para a Ciencia e Tecnologia (FCT) to C Pais; the Belgian Science Policy Office (Belspo) to BCCM/IHEM; the MEXBOL program of CONACyT-Mexico, [ref. number: 1228961 to ML Taylor and [122481] to C Toriello; the Institut Pasteur and Institut de Veil le Sanitaire to F Dromer and D Garcia-Hermoso; and the grants from the Conselho Nacional de Desenvolvimento Cientifico e Tecnologico (CNPq) and the Fundacao de Amparo a Pesquisa do Estado de Goias (FAPEG) to CM de Almeida Soares and JA Parente Rocha. I Arthur would like to thank G Cherian, A Higgins and the staff of the Molecular Diagnostics Laboratory, Division of Microbiology and Infectious Diseases, Path West, QEII Medial Centre. Dromer would like to thank for the technical help of the sequencing facility and specifically that of I, Diancourt, A-S Delannoy-Vieillard, J-M Thiberge (Genotyping of Pathogens and Public Health, Institut Pasteur). RM Zancope-Oliveira would like to thank the Genomic/DNA Sequencing Platform at Fundacao Oswaldo Cruz-PDTIS/FIOCRUZ [RPT01A], Brazil for the sequencing. B Robbertse and CL Schoch acknowledge support from the Intramural Research Program of the NIH, National Library of Medicine. T Sorrell's work is funded by the NH&MRC of Australia; she is a Sydney Medical School Foundation Fellow., info:eu-repo/semantics/publishedVersion