99,262 results on '"Jonsson A"'
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2. Healthy Live Births Should be Considered as Competing Events when Estimating the Total Effect of Prenatal Medication Use on Pregnancy Outcomes
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Latour, Chase D., Klose, Mark, Edwards, Jessie K., Song, Zoey, Funk, Michele Jonsson, and Wood, Mollie E.
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Statistics - Applications - Abstract
Pregnancy loss is recognized as an important competing event in studies of prenatal medication use. However, a healthy live birth also precludes subsequent adverse pregnancy outcomes, yet these events are often censored. Using Monte Carlo simulation, we examine bias that results from failure to account for healthy live birth as a competing event in estimates of the total effect of prenatal medication use on pregnancy outcomes. We simulated data for 12 trials estimating the effect of antihypertensive initiation versus non-initiation on two outcomes: (1) composite fetal death or severe prenatal preeclampsia and (2) small-for-gestational-age (SGA) live birth. We used time-to-event methods to estimate absolute risks, risk differences and risk ratios. For the composite outcome, we conducted two analyses where non-preeclamptic live birth was (1) a censoring event and (2) a competing event. For SGA live birth, we conducted three analyses where fetal death and non-SGA live birth were (1) censoring events, (2) a competing event and censoring event, respectively; and (3) competing events. In all analyses, censoring healthy live births led to inflated absolute risk estimates as well as bias and imprecise treatment effect estimates. Studies of prenatal exposures on pregnancy outcomes should analyze healthy live births as competing risks to estimate unbiased total treatment effects., Comment: 33 pages, 4 figures
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- 2024
3. Towards a Parameterized Approximation Dichotomy of MinCSP for Linear Equations over Finite Commutative Rings
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Dabrowski, Konrad K., Jonsson, Peter, Ordyniak, Sebastian, Osipov, George, and Wahlstroem, Magnus
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Computer Science - Data Structures and Algorithms ,F.2.2 ,G.2 - Abstract
We consider the MIN-r-LIN(R) problem: given a system S of length-r linear equations over a ring R, find a subset of equations Z of minimum cardinality such that S-Z is satisfiable. The problem is NP-hard and UGC-hard to approximate within any constant even when r=|R|=2, so we focus on parameterized approximability with solution size as the parameter. For a large class of infinite rings R called Euclidean domains, Dabrowski et al. [SODA-2023] obtained an FPT-algorithm for MIN-2-LIN(R) using an LP-based approach based on work by Wahlstr\"om [SODA-2017]. Here, we consider MIN-r-LIN(R) for finite commutative rings R, initiating a line of research with the ultimate goal of proving dichotomy theorems that separate problems that are FPT-approximable within a constant from those that are not. A major motivation is that our project is a promising step for more ambitious classification projects concerning finite-domain MinCSP and VCSP. Dabrowski et al.'s algorithm is limited to rings without zero divisors, which are only fields among finite commutative rings. Handling zero divisors seems to be an insurmountable obstacle for the LP-based approach. In response, we develop a constant-factor FPT-approximation algorithm for a large class of finite commutative rings, called Bergen rings, and thus prove approximability for chain rings, principal ideal rings, and Z_m for all m>1. We complement the algorithmic result with powerful lower bounds. For r>2, we show that the problem is not FPT-approximable within any constant (unless FPT=W[1]). We identify the class of non-Helly rings for which MIN-2-LIN(R) is not FPT-approximable. Under ETH, we also rule out (2-e)-approximation for every e>0 for non-lineal rings, which includes e.g. rings Z_{pq} where p and q are distinct primes. Towards closing the gaps between upper and lower bounds, we lay the foundation of a geometric approach for analysing rings.
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- 2024
4. APOKASC-3: The Third Joint Spectroscopic and Asteroseismic catalog for Evolved Stars in the Kepler Fields
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Pinsonneault, Marc H., Zinn, Joel C., Tayar, Jamie, Serenelli, Aldo, Garcia, Rafael A., Mathur, Savita, Vrard, Mathieu, Elsworth, Yvonne P., Mosser, Benoit, Stello, Dennis, Bell, Keaton J., Bugnet, Lisa, Corsaro, Enrico, Gaulme, Patrick, Hekker, Saskia, Hon, Marc, Huber, Daniel, Kallinger, Thomas, Cao, Kaili, Johnson, Jennifer A., Liagre, Bastien, Patton, Rachel A., Santos, Angela R. G., Basu, Sarbani, Beck, Paul G., Beers, Timothy C., Chaplin, William J., Cunha, Katia, Frinchaboy, Peter M., Girardi, Leo, Godoy-Rivera, Diego, Holtzman, Jon A., Jonsson, Henrik, Meszaros, Szabolcs, Reyes, Claudia, Rix, Hans-Walter, Shetrone, Matthew, Smith, Verne V., Spoo, Taylor, Stassun, Keivan G., and Wang, Ji
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Astrophysics - Solar and Stellar Astrophysics - Abstract
In the third APOKASC catalog, we present data for the complete sample of 15,808 evolved stars with APOGEE spectroscopic parameters and Kepler asteroseismology. We used ten independent asteroseismic analysis techniques and anchor our system on fundamental radii derived from Gaia $L$ and spectroscopic $T_{\rm eff}$. We provide evolutionary state, asteroseismic surface gravity, mass, radius, age, and the spectroscopic and asteroseismic measurements used to derive them for 12,418 stars. This includes 10,036 exceptionally precise measurements, with median fractional uncertainties in \nmax, \dnu, mass, radius and age of 0.6\%, 0.6\%, 3.8\%, 1.8\%, and 11.1\% respectively. We provide more limited data for 1,624 additional stars which either have lower quality data or are outside of our primary calibration domain. Using lower red giant branch (RGB) stars, we find a median age for the chemical thick disk of $9.14 \pm 0.05 ({\rm ran}) \pm 0.9 ({\rm sys})$ Gyr with an age dispersion of 1.1 Gyr, consistent with our error model. We calibrate our red clump (RC) mass loss to derive an age consistent with the lower RGB and provide asymptotic GB and RGB ages for luminous stars. We also find a sharp upper age boundary in the chemical thin disk. We find that scaling relations are precise and accurate on the lower RGB and RC, but they become more model dependent for more luminous giants and break down at the tip of the RGB. We recommend the usage of multiple methods, calibration to a fundamental scale, and the usage of stellar models to interpret frequency spacings., Comment: 43 pages, 25 figures, submitted ApJSupp. Comments welcome. Data tables available on request from pinsonneault.1@osu.edu
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- 2024
5. Global Seismic Monitoring using Operational Subsea Cable
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Mazur, Mikael, Karrenbach, Martin, Fontaine, Nicolas K., Ryf, Roland, Kamalov, Valey, Dallachiesa, Lauren, Jonsson, Örn, Hlynsson, Andre Anar, Hlynsson, Sigurdur, Chen, Haoshuo, Winter, David, Neilson, David T., Ruiz-Angulo, Angel, and Hjorleifsdottir, Vala
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Physics - Geophysics ,Electrical Engineering and Systems Science - Signal Processing - Abstract
We report tele-seismic waves detection from multiple earthquakes on an operational subsea cable from Iceland to Ireland. Using per-span laser interferometry with 100km spacing, we report clear detection of S-, P- and surface waves from multiple world-wide earthquakes, enabling seismic analysis for early warning applications., Comment: 3 pages, 2 figures. Conference submission
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- 2024
6. On Adaptive Frequency Sampling for Data-driven MOR Applied to Antenna Responses
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Åkerstedt, Lucas, Blanco, Darwin, and Jonsson, B. L. G.
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Electrical Engineering and Systems Science - Systems and Control ,Physics - Computational Physics ,G.1.1 ,J.2 - Abstract
Frequency domain sweeps of array antennas are well-known to be time-intensive, and different surrogate models have been used to improve the performance. Data-driven model order reduction algorithms, such as the Loewner framework and vector fitting, can be integrated with these adaptive error estimates, in an iterative algorithm, to reduce the number of full-wave simulations required to accurately capture the requested frequency behavior of multiport array antennas. In this work, we propose two novel adaptive methods exploiting a block matrix function which is a key part of the Loewner framework generating system approach. The first algorithm leverages an inherent matrix parameter freedom in the block matrix function to identify frequency points with large errors, whereas the second utilizes the condition number of the block matrix function. Both methods effectively provide frequency domain error estimates, which are essential for improved performance. Numerical experiments on multiport array antenna S-parameters demonstrate the effectiveness of our proposed algorithms within the Loewner framework., Comment: 10 pages, 12 figures
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- 2024
7. Advanced perturbation scheme for efficient polarizability computations
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Nair, Anoop Ajaya Kumar, Bessner, Julian, Jacob, Timo, and Jónsson, Elvar Örn
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Physics - Chemical Physics - Abstract
We present an efficient momentum based perturbation scheme to evaluate polarizability tensors of small molecules and at the fraction of the computational cost compared to conventional energy based perturbation schemes. Furthermore, the simplicity of the scheme allows for the seamless integration into modern quantum chemistry codes. We apply the method to systems where the wavefunctions are described on a real-space grid and are therefore not subject to finite size basis set errors. In the grid-based scheme errors can be attributed to the resolution and the size of the grid-space. The applicability and generality of the method is exhibited by calculating polarizability tensors including the dipole-dipole and up to the quadrupole-quadrupole for a series of small molecules, representing the most common symmetry groups. By a direct comparison with standard techniques based on energy perturbation we show that the method reduces the number of explicit computations by a factor of 30. Numerical errors introduced due to the arrangement of the explicit point charges are eliminated with an extrapolation scheme to the effective zero-perturbation limit., Comment: 12 pages, 7 figures
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- 2024
8. Doping-Induced Enhancement of Hydrogen Evolution at MoS2 Electrodes
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Hanslin, Sander Ø., Jónsson, Hannes, and Akola, Jaakko
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Condensed Matter - Materials Science ,Condensed Matter - Mesoscale and Nanoscale Physics ,Physics - Chemical Physics ,Physics - Computational Physics - Abstract
Rate theory and DFT calculations of hydrogen evolution reaction (HER) on MoS2 with Co, Ni and Pt impurities show the significance of dihydrogen (H2*) complex where both hydrogen atoms are interacting with the surface. Stabilization of such a complex affects the competing Volmer-Heyrovsky (direct H2 release) and Volmer-Tafel (H2* intermediate) pathways. The resulting evolution proceeds with a very small overpotential for all dopants ($\eta$ = 0.1 to 0.2 V) at 25% edge substitution, significantly reduced from the already low $\eta$ = 0.27 V for the undoped edge. At full edge substitution, Co-MoS2 remains highly active ($\eta$ = 0.18 V) while Ni- and Pt-MoS2 are deactivated ($\eta$ = 0.4 to 0.5 V) due to unfavorable interaction with H2*. Instead of the single S-vacancy, the site of intrinsic activity in the basal plane was found to be the undercoordinated central Mo-atom in threefold S-vacancy configurations, enabling hydrogen evolution with $\eta$ = 0.52 V via a H2* intermediate. The impurity atoms interact favorably with the intrinsic sulfur vacancies on the basal plane, stabilizing but simultaneously deactivating the triple vacancy configuration. The calculated shifts in overpotential are consistent with reported measurements, and the dependence on doping level may explain variations in experimental observations.
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- 2024
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9. Tractable Offline Learning of Regular Decision Processes
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Deb, Ahana, Cipollone, Roberto, Jonsson, Anders, Ronca, Alessandro, and Talebi, Mohammad Sadegh
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Computer Science - Machine Learning ,Computer Science - Artificial Intelligence ,Computer Science - Formal Languages and Automata Theory - Abstract
This work studies offline Reinforcement Learning (RL) in a class of non-Markovian environments called Regular Decision Processes (RDPs). In RDPs, the unknown dependency of future observations and rewards from the past interactions can be captured by some hidden finite-state automaton. For this reason, many RDP algorithms first reconstruct this unknown dependency using automata learning techniques. In this paper, we show that it is possible to overcome two strong limitations of previous offline RL algorithms for RDPs, notably RegORL. This can be accomplished via the introduction of two original techniques: the development of a new pseudometric based on formal languages, which removes a problematic dependency on $L_\infty^\mathsf{p}$-distinguishability parameters, and the adoption of Count-Min-Sketch (CMS), instead of naive counting. The former reduces the number of samples required in environments that are characterized by a low complexity in language-theoretic terms. The latter alleviates the memory requirements for long planning horizons. We derive the PAC sample complexity bounds associated to each of these techniques, and we validate the approach experimentally., Comment: To appear in EWRL 2024
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- 2024
10. Revisiting N$_2$ with Neural-Network-Supported CI
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Schmerwitz, Yorick L. A., Thirion, Louis, Levi, Gianluca, Jónsson, Elvar Ö., Bilous, Pavlo, Jónsson, Hannes, and Hansmann, Philipp
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Physics - Chemical Physics - Abstract
We apply a recently proposed computational protocol for a neural-network-supported configuration interaction (NN CI) calculation to the paradigmatic N$_2$ molecule. By comparison of correlation energy, binding energy, and the full dissociation curve to experimental and full CI benchmarks, we demonstrate the applicability and robustness of our approach for the first time in the context of molecular systems, and offer thereby a new complementary tool in the family of machine-learning-based computation methods. The main advantage of the method lies in the efficiency of the neural-network-selected many-body basis set. Specifically, we approximate full CI results obtained on bases of $\approx 10^{10}$ Slater Determinants with only $\approx10^{5}$ determinants with good accuracy. The high efficiency of the NN CI approach underlines its potential for broader applications such as structural optimizations and even computation of spectroscopic observables in systems for which computational resources are a limiting factor., Comment: 8 pages, 4 figures
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- 2024
11. Factors Influencing Swedish Grades 4-6 Technology Teachers' Choice of Teaching and Learning Material in Programming Education
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Eva-Lena Bjursten, Tor Nilsson, and Gunnar Jonsson
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There is a recognized need to understand the current state of programming implementation in the Swedish compulsory school system. This study focused specifically on the implementation of programming in the school subject of technology for grades 4-6. In Sweden, the responsibility for choosing teaching and learning material lies with individual teachers. Recent studies have indicated the prevalence of visual programming languages (VPLs) in classrooms. However, no empirical research has specifically investigated why teachers select particular programming learning environments (PLEs) and the challenges they have overcome in this process. Therefore, this study aimed to explore the PLEs used by teachers and the factors influencing their choices. In addition, this study explored the role of pedagogical content knowledge (PCK) and the influence of systemic and situational amplifiers and filters in shaping the programming education landscape, highlighting the importance of understanding these factors for effective implementation. Semi-structured interviews were conducted with 14 experienced programming teachers in grades 4-6 to gather insights. The results revealed that VPLs, particularly Scratch, have been widely adopted, but the study also identified three textual programming languages being utilized. Furthermore, the findings indicate that teachers' previous education plays a significant role in shaping their PLE preferences. This suggests that programming education in both professional development and preservice teacher training is crucial for effective implementation. By investigating PLE choices and the factors influencing them, this study contributes to a better understanding of the current landscape of programming education in Sweden's compulsory school system.
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- 2024
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12. Silver electrodes are highly selective for CO in CO$_2$ electroreduction due to interplay between voltage dependent kinetics and thermodynamics
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Fiorentin, Michele Re, Risplendi, Francesca, Salvini, Clara, Zeng, Juqin, Cicero, Giancarlo, and Jónsson, Hannes
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Condensed Matter - Materials Science - Abstract
Electrochemical reduction is a promising way to make use of CO$_2$ as feedstock for generating renewable fuel and valuable chemicals. Several metals can be used in the electrocatalyst to generate CO and formic acid but hydrogen formation is an unwanted side reaction that can even be dominant. The lack of selectivity is in general a significant problem, but silver-based electrocatalysts have been shown to be highly selective for CO with over over 90% faradaic efficiency when the applied voltage is below -1 V vs. RHE. Hydrogen formation is then insignificant and little formate is formed even though it is thermodynamically favored. We present calculations of the activation free energy for the various elementary steps as a function of applied voltage at the three low index facets, Ag(111), Ag(100) and Ag(110), as well as experimental measurements on polycrystalline electrodes, to identify the reason for this high selectivity. The formation of formic acid is suppressed because of the low coverage of adsorbed hydrogen and kinetic hindrance to the formation of the HCOO* intermediate, while *COOH, a key intermediate in CO formation, is thermodynamically unstable until the applied voltage reaches -1 V vs. RHE, at which point the kinetics for its formation are more favorable than for hydrogen. The calculated results are consistent with experimental measurements carried out for acidic conditions and provide an atomic scale insight into the high CO selectivity of silver-based electrocatalysts.
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- 2024
13. (Twisted) canonical supermultiplets and their resolutions as open-closed homotopy algebras
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Jonsson, Simon
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Mathematical Physics ,High Energy Physics - Theory - Abstract
We argue that some supersymmetric multiplets can naturally be equipped with the structure of an open-closed homotopy algebra. This structure is readily described through the pure spinor superfield formalism, which in particular associates a canonical multiplet for each choice of supersymmetry algebra. We study the open-closed homotopy algebra associated to (twists of) (resolutions of) the canonical multiplet, and show that it fits into a span of open-closed homotopy algebras, extending results of Cederwall et al. arXiv:2304.01258., Comment: 28 pages
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- 2024
14. CSPs with Few Alien Constraints
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Jonsson, Peter, Lagerkvist, Victor, and Osipov, George
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Computer Science - Computational Complexity ,Computer Science - Artificial Intelligence - Abstract
The constraint satisfaction problem asks to decide if a set of constraints over a relational structure $\mathcal{A}$ is satisfiable (CSP$(\mathcal{A})$). We consider CSP$(\mathcal{A} \cup \mathcal{B})$ where $\mathcal{A}$ is a structure and $\mathcal{B}$ is an alien structure, and analyse its (parameterized) complexity when at most $k$ alien constraints are allowed. We establish connections and obtain transferable complexity results to several well-studied problems that previously escaped classification attempts. Our novel approach, utilizing logical and algebraic methods, yields an FPT versus pNP dichotomy for arbitrary finite structures and sharper dichotomies for Boolean structures and first-order reducts of $(\mathbb{N},=)$ (equality CSPs), together with many partial results for general $\omega$-categorical structures.
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- 2024
15. Notions of Fermionic Entropies of a Causal Fermion System
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Finster, Felix, Jonsson, Robert H., Lottner, Magdalena, Much, Albert, and Murro, Simone
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Mathematical Physics ,Quantum Physics - Abstract
The fermionic von Neumann entropy, the fermionic entanglement entropy and the fermionic relative entropy are defined for causal fermion systems. Our definition makes use of entropy formulas for quasi-free fermionic states in terms of the reduced one-particle density operator. Our definitions are illustrated in various examples for Dirac spinors in two- and four-dimensional Minkowski space, in the Schwarzschild black hole geometry and for fermionic lattices. We review area laws for the two-dimensional diamond and a three-dimensional spatial region in Minkowski space. The connection is made to the computation of the relative entropy using modular theory., Comment: 36 pages, LaTeX, 2 figures
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- 2024
16. Homotopy representations of extended holomorphic symmetry in holomorphic twists
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Jonsson, Simon, Kim, Hyungrok, and Young, Charles Alastair Stephen
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High Energy Physics - Theory ,Mathematical Physics ,81T13 (Primary) 17B55, 17B81, 32A38 (Secondary) - Abstract
We argue that holomorphic twists of supersymmetric field theories naturally come with a symmetry $L_\infty$-algebra that nontrivially extends holomorphic symmetry. This symmetry acts on spacetime fields only up to homotopy, and the extension is only visible at the level of higher components of the action. We explicitly compute this for the holomorphic twist of ten-dimensional supersymmetric Yang-Mills theory, which produces a nontrivial action of a higher $L_\infty$-algebra on (a graded version) of five-dimensional affine space., Comment: 26 pages. Added additional references and minor clarifications
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- 2024
17. Hierarchical Average-Reward Linearly-solvable Markov Decision Processes
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Infante, Guillermo, Jonsson, Anders, and Gómez, Vicenç
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Computer Science - Machine Learning ,Computer Science - Artificial Intelligence - Abstract
We introduce a novel approach to hierarchical reinforcement learning for Linearly-solvable Markov Decision Processes (LMDPs) in the infinite-horizon average-reward setting. Unlike previous work, our approach allows learning low-level and high-level tasks simultaneously, without imposing limiting restrictions on the low-level tasks. Our method relies on partitions of the state space that create smaller subtasks that are easier to solve, and the equivalence between such partitions to learn more efficiently. We then exploit the compositionality of low-level tasks to exactly represent the value function of the high-level task. Experiments show that our approach can outperform flat average-reward reinforcement learning by one or several orders of magnitude.
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- 2024
18. On the Rees algebra and the conductor of an ideal
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Gasanova, Oleksandra, Herzog, Jürgen, Kling, Filip Jonsson, and Moradi, Somayeh
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Mathematics - Commutative Algebra ,13A30 (Primary) 05E40 (Secondary) - Abstract
For an ideal $I$ in a Noetherian ring $R$, we introduce and study its conductor as a tool to explore the Rees algebra of $I$. The conductor of $I$ is an ideal $C(I)\subset R$ obtained from the defining ideals of the Rees algebra and the symmetric algebra of $I$ by a colon operation. Using this concept we investigate when adding an element to an ideal preserves the property of being of linear type. In this regard, a generalization of a result by Valla in terms of the conductor ideal is presented. When the conductor of a graded ideal in a polynomial ring is the graded maximal ideal, a criteria is given for when the Rees algebra and the symmetric algebra have the same Krull dimension. Finally, noting the fact that the conductor of a monomial ideal is a monomial ideal, the conductor of some families of monomial ideals, namely bounded Veronese ideals and edge ideals of graphs, are determined., Comment: 16 pages, 1 figure
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- 2024
19. Performance Evaluation of MLO for XR Streaming: Can Wi-Fi 7 Meet the Expectations?
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Carrascosa-Zamacois, Marc, Galati-Giordano, Lorenzo, Wilhelmi, Francesc, Fontanesi, Gianluca, Jonsson, Anders, Geraci, Giovanni, and Bellalta, Boris
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Computer Science - Networking and Internet Architecture ,Computer Science - Information Theory - Abstract
Extended Reality (XR) has stringent throughput and delay requirements that are hard to meet with current wireless technologies. Missing these requirements can lead to worsened picture quality, perceived lag between user input and corresponding output, and even dizziness for the end user. In this paper, we study the capability of upcoming Wi-Fi 7, and its novel support for Multi-Link Operation (MLO), to cope with these tight requirements. Our study is based on simulation results extracted from an MLO-compliant simulator that realistically reproduces VR traffic. Results show that MLO can sustain VR applications. By jointly using multiple links with independent channel access procedures, MLO can reduce the overall delay, which is especially useful in the uplink, as it has more stringent requirements than the downlink, and is instrumental in delivering the expected performance. We show that using MLO can allow more users per network than an equivalent number of links using SLO. We also show that while maintaining the same overall bandwidth, a higher number of MLO links with narrow channels leads to lower delays than a lower number of links with wider channels.
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- 2024
20. Immutable in Principle, Upgradeable by Design: Exploratory Study of Smart Contract Upgradeability
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Qasse, Ilham, Hamdaqa, Mohammad, and Jónsson, Björn Þór
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Computer Science - Software Engineering - Abstract
Smart contracts, known for their immutable nature to ensure trust via automated enforcement, have evolved to require upgradeability due to unforeseen vulnerabilities and the need for feature enhancements post-deployment. This contradiction between immutability and the need for modifications has led to the development of upgradeable smart contracts. These contracts are immutable in principle yet upgradable by design, allowing updates without altering the underlying data or state, thus preserving the contract's intent while allowing improvements. This study aims to understand the application and implications of upgradeable smart contracts on the Ethereum blockchain. By introducing a dataset that catalogs the versions and evolutionary trajectories of smart contracts, the research explores key dimensions: the prevalence and adoption patterns of upgrade mechanisms, the likelihood and occurrences of contract upgrades, the nature of modifications post-upgrade, and their impact on user engagement and contract activity. Through empirical analysis, this study identifies upgradeable contracts and examines their upgrade history to uncover trends, preferences, and challenges associated with modifications. The evidence from analyzing over 44 million contracts shows that only 3% have upgradeable characteristics, with only 0.34% undergoing upgrades. This finding underscores a cautious approach by developers towards modifications, possibly due to the complexity of upgrade processes or a preference for maintaining stability. Furthermore, the study shows that upgrades are mainly aimed at feature enhancement and vulnerability mitigation, particularly when the contracts' source codes are accessible. However, the relationship between upgrades and user activity is complex, suggesting that additional factors significantly affect the use of smart contracts beyond their evolution.
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- 2024
21. Bisimulation Metrics are Optimal Transport Distances, and Can be Computed Efficiently
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Calo, Sergio, Jonsson, Anders, Neu, Gergely, Schwartz, Ludovic, and Segovia-Aguas, Javier
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Computer Science - Machine Learning ,Mathematics - Optimization and Control ,Statistics - Machine Learning - Abstract
We propose a new framework for formulating optimal transport distances between Markov chains. Previously known formulations studied couplings between the entire joint distribution induced by the chains, and derived solutions via a reduction to dynamic programming (DP) in an appropriately defined Markov decision process. This formulation has, however, not led to particularly efficient algorithms so far, since computing the associated DP operators requires fully solving a static optimal transport problem, and these operators need to be applied numerous times during the overall optimization process. In this work, we develop an alternative perspective by considering couplings between a flattened version of the joint distributions that we call discounted occupancy couplings, and show that calculating optimal transport distances in the full space of joint distributions can be equivalently formulated as solving a linear program (LP) in this reduced space. This LP formulation allows us to port several algorithmic ideas from other areas of optimal transport theory. In particular, our formulation makes it possible to introduce an appropriate notion of entropy regularization into the optimization problem, which in turn enables us to directly calculate optimal transport distances via a Sinkhorn-like method we call Sinkhorn Value Iteration (SVI). We show both theoretically and empirically that this method converges quickly to an optimal coupling, essentially at the same computational cost of running vanilla Sinkhorn in each pair of states. Along the way, we point out that our optimal transport distance exactly matches the common notion of bisimulation metrics between Markov chains, and thus our results also apply to computing such metrics, and in fact our algorithm turns out to be significantly more efficient than the best known methods developed so far for this purpose.
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- 2024
22. Single Atom Substituents in Copper Surfaces May Adsorb Multiple CO Molecules
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Christiansen, Magnus A. H., Peña-Torres, Alejandro, Jónsson, Elvar Ö., and Jónsson, Hannes
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Condensed Matter - Materials Science - Abstract
Copper is a good CO2 electroreduction catalyst as products beyond CO form, but efficiency and selectivity is low. Experiments have shown that admixture of other elements can help, and computational screening studies have pointed out various promising candidates based on the adsorption of a single CO molecule as a descriptor. Our calculations of CO adsorption on surfaces where a first row transition metal atom replaces a Cu atom show that multiple CO molecules, not just one, bind to the substitutional atom. For Fe, Co, and Ni atoms, a decrease in binding energy is found, but the reverse trend, namely increasing bond strength, is found for V, Cr, and Mn and the first three CO molecules. Magnetic moment, charge, and position of the substitutional atom are also strongly affected by the CO adsorption in most cases. Magnetic moment is stepwise reduced to zero, and the outward displacement of the substitutional atom increased., Comment: 8 pages, 2 figures
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- 2024
23. Support in Daily Living for Young Adults with Neurodevelopmental Conditions in Sweden: A Qualitative Description of Current Practice
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Maria Löthberg, Tatja Hirvikoski, Sonya Girdler, Sven Bölte, and Ulf Jonsson
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In Sweden, people living independently and requiring daily living support can access 'housing support', a form of practical, educational, and social support provided by the municipalities. About two-thirds of those receiving this support have neurodevelopmental conditions, primarily autism or ADHD. Many are young adults in the process of adapting to new roles and expectations in different life domains, including education, work, and accommodation. This study aimed to provide a qualitative description of support workers' views on current practice in housing support for young adults (aged 18 to 29) with neurodevelopmental conditions. Semi-structured telephone interviews were conducted with 34 housing support workers across 19 Swedish regions. An inductive qualitative content analysis approach was used. The interviews depicted a complex service, subject to "organizational" aspects (roles, responsibilities, availability, and allocation), the joint effort of "key players" (young adults, relatives, and support workers), and practical aspects of "service provision" (finding common ground for the work, and delivery of support). Some elements of the service were poorly designed for the target group. The support workers expressed a need for more knowledge about neurodevelopmental conditions, but also described new insights related to remote delivery of support. The results raise important questions about how housing support should be organized and delivered to strike the right balance between support and autonomy, meet specific needs, and ensure equal services across municipalities. Future research should adopt multiple perspectives and approaches, to help translate best practice and available evidence into a flexible and sustainable service.
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- 2024
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24. School Absenteeism in Autistic Children and Adolescents: A Scoping Review
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Viviann Nordin, Maud Palmgren, Anna Lindbladh, Sven Bölte, and Ulf Jonsson
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School absenteeism is a major societal problem, with a range of potential adverse long-term consequences. This scoping review aimed to provide a comprehensive overview of the research on school absenteeism in autistic children and adolescents, expose important gaps in the literature, and explore possibilities for future systematic reviews. Five relevant databases were searched systematically from inception to June 2023, yielding a total of 46 eligible reports from 42 separate studies. All studies were conducted in high-income countries, and most were published in the last decade. Three major themes emerged: occurrence, contextual factors, and interventions. The results of large-scale population-based studies clearly suggested that autistic children and adolescents were absent from school more often than their non-autistic peers, which partly was attributable to co-occurring conditions. Bullying also emerged as a potential risk factor. Only a few preliminary studies were available on targeted interventions, emphasizing the need for more robust studies. More research is also needed on the mechanisms leading to and maintaining school absenteeism in this group of learners. Overall, the diversity of research questions, methods, and definitions used in this body of research suggests that systematic reviews with narrow focus on a few key questions may still be premature.
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- 2024
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25. SIMS: A deep-learning label transfer tool for single-cell RNA sequencing analysis
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Gonzalez-Ferrer, Jesus, Lehrer, Julian, O’Farrell, Ash, Paten, Benedict, Teodorescu, Mircea, Haussler, David, Jonsson, Vanessa D, and Mostajo-Radji, Mohammed A
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Information and Computing Sciences ,Biological Sciences ,Machine Learning ,Stem Cell Research - Induced Pluripotent Stem Cell - Human ,Networking and Information Technology R&D (NITRD) ,Neurosciences ,Stem Cell Research ,Human Genome ,Bioengineering ,Stem Cell Research - Induced Pluripotent Stem Cell ,Machine Learning and Artificial Intelligence ,Genetics ,1.1 Normal biological development and functioning ,Neurological ,Single-Cell Analysis ,Humans ,Deep Learning ,Sequence Analysis ,RNA ,Animals ,Brain ,Neurons ,Organoids ,Cell Differentiation ,Mice ,RNA sequencing ,TabNet ,brain organoids ,cell atlas ,label transfer ,machine learning ,neurodevelopment ,neuroscience data ,reference mapping ,single cell analysis - Abstract
Cell atlases serve as vital references for automating cell labeling in new samples, yet existing classification algorithms struggle with accuracy. Here we introduce SIMS (scalable, interpretable machine learning for single cell), a low-code data-efficient pipeline for single-cell RNA classification. We benchmark SIMS against datasets from different tissues and species. We demonstrate SIMS's efficacy in classifying cells in the brain, achieving high accuracy even with small training sets (
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- 2024
26. Fine Tuning of the Rotational Rate of Light-Driven, Second Generation Molecular Motors by Fluorine Substitutions
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Tambovtsev, Ivan, Schmerwitz, Yorick L. A., Levi, Gianluca, Darmoroz, Darina D., Nesterov, Pavel V., Orlova, Tetiana, and Jónsson, Hannes
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Physics - Chemical Physics - Abstract
The relaxation time of several second generation molecular motors is analysed by calculating the minimum energy path between the metastable and stable states and evaluating the transition rate within harmonic transition state theory based on energetics obtained from density functional theory. Comparison with published experimental data shows remarkably good agreement and demonstrates the predictive capability of the theoretical approach. While previous measurements by Feringa and coworkers [Chem.\,Eur.\,J.\,(2017) 23, 6643] have shown that a replacement of the stereogenic hydrogen by a fluorine atom increases the relaxation time because of destabilization of the transition state for the thermal helix inversion, we find that a replacement of CH$_3$ by a CF$_3$ group at the same site shortens the relaxation time because of elevated energy of the metastable state without a significant shift in the transition state energy. Since these two fluorine substitutions have an opposite effect on the relaxation time, the two combined can provide a way to fine tune the rotational speed of a molecular motor.
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- 2024
27. First joint oscillation analysis of Super-Kamiokande atmospheric and T2K accelerator neutrino data
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Super-Kamiokande, collaborations, T2K, Abe, S., Abe, K., Akhlaq, N., Akutsu, R., Alarakia-Charles, H., Ali, A., Hakim, Y. I. Alj, Monsalve, S. Alonso, Amanai, S., Andreopoulos, C., Anthony, L. H. V., Antonova, M., Aoki, S., Apte, K. A., Arai, T., Arihara, T., Arimoto, S., Asada, Y., Asaka, R., Ashida, Y., Atkin, E. T., Babu, N., Barbi, M., Barker, G. J., Barr, G., Barrow, D., Bates, P., Batkiewicz-Kwasniak, M., Beauchêne, A., Berardi, V., Berns, L., Bhadra, S., Bhuiyan, N., Bian, J., Blanchet, A., Blondel, A., Bodur, B., Bolognesi, S., Bordoni, S., Boyd, S. B., Bravar, A., Bronner, C., Bubak, A., Avanzini, M. Buizza, Burton, G. T., Caballero, J. A., Calabria, N. F., Cao, S., Carabadjac, D., Carter, A. J., Cartwright, S. L., Casado, M. P., Catanesi, M. G., Cervera, A., Chakrani, J., Chalumeau, A., Chen, S., Cherdack, D., Choi, K., Chong, P. S., Chvirova, A., Cicerchia, M., Coleman, J., Collazuol, G., Cook, L., Cormier, F., Cudd, A., Dalmazzone, C., Daret, T., Dasgupta, P., Davis, C., Davydov, Yu. I., De Roeck, A., De Rosa, G., Dealtry, T., Delogu, C. C., Densham, C., Dergacheva, A., Dharmapal, R., Di Lodovico, F., Lopez, G. Diaz, Dolan, S., Douqa, D., Doyle, T. A., Drapier, O., Duffy, K. E., Dumarchez, J., Dunne, P., Dygnarowicz, K., D'ago, D., Edwards, R., Eguchi, A., Elias, J., Emery-Schrenk, S., Erofeev, G., Ershova, A., Eurin, G., Fannon, J. E. P., Fedorova, D., Fedotov, S., Feltre, M., Feng, J., Feng, L., Ferlewicz, D., Fernandez, P., Finch, A. J., Aguirre, G. A. Fiorentini, Fiorillo, G., Fitton, M. D., Patiño, J. M. Franco, Friend, M., Fujii, Y., Fujisawa, C., Fujita, S., Fukuda, Y., Furui, Y., Gao, J., Gaur, R., Giampaolo, A., Giannessi, L., Giganti, C., Glagolev, V., Goldsack, A., Gonin, M., Rosa, J. González, Goodman, E. A. G., Gorin, A., Gorshanov, K., Gousy-Leblanc, V., Grassi, M., Griskevich, N. J., Guigue, M., Hadley, D., Haigh, J. T., Han, S., Harada, M., Harris, D. A., Hartz, M., Hasegawa, T., Hassani, S., Hastings, N. C., Hayato, Y., Heitkamp, I., Henaff, D., Hill, J., Hino, Y., Hiraide, K., Hogan, M., Holeczek, J., Holin, A., Holvey, T., Van, N. T. Hong, Honjo, T., Horiuchi, S., Hosokawa, K., Hu, Z., Hu, J., Iacob, F., Ichikawa, A. K., Ieki, K., Ikeda, M., Iovine, N., Ishida, T., Ishino, H., Ishitsuka, M., Ishizuka, T., Ito, H., Itow, Y., Izmaylov, A., Izumiyama, S., Jakkapu, M., Jamieson, B., Jang, M. C., Jang, J. S., Jenkins, S. J., Jesús-Valls, C., Ji, J. Y., Jia, M., Jiang, J., Jonsson, P., Joshi, S., Jung, C. K., Jung, S., Kabirnezhad, M., Kaboth, A. C., Kajita, T., Kakuno, H., Kameda, J., Kanemura, Y., Kaneshima, R., Karpova, S., Kasetti, S. P., Kashiwagi, Y., Kasturi, V. S., Kataoka, Y., Katori, T., Kawamura, Y., Kawaue, M., Kearns, E., Khabibullin, M., Khotjantsev, A., Kikawa, T., Kim, S. B., King, S., Kiseeva, V., Kisiel, J., Kneale, L., Kobayashi, H., Kobayashi, T., Kobayashi, M., Koch, L., Kodama, S., Kolupanova, M., Konaka, A., Kormos, L. L., Koshio, Y., Koto, T., Kowalik, K., Kudenko, Y., Kudo, Y., Kuribayashi, S., Kurjata, R., Kurochka, V., Kutter, T., Kuze, M., Kwon, E., La Commara, M., Labarga, L., Lachat, M., Lachner, K., Lagoda, J., Lakshmi, S. M., LamersJames, M., Langella, A., Laporte, J. -F., Last, D., Latham, N., Laveder, M., Lavitola, L., Lawe, M., Learned, J. G., Lee, Y., Lee, S. H., Silverio, D. Leon, Levorato, S., Lewis, S., Li, X., Li, W., Lin, C., Litchfield, R. P., Liu, S. L., Liu, Y. M., Long, K. R., Longhin, A., Moreno, A. Lopez, Lu, X., Ludovici, L., Lux, T., Machado, L. N., Maekawa, Y., Magaletti, L., Mahn, K., Mahtani, K. K., Malek, M., Mandal, M., Manly, S., Marino, A. D., Martens, K., Marti, Ll., Martin, D. G. R., Martin, J. F., Martin, D., Martini, M., Maruyama, T., Matsubara, T., Matsumoto, R., Mattiazzi, M., Matveev, V., Mauger, C., Mavrokoridis, K., Mazzucato, E., McCauley, N., McElwee, J. M., McFarland, K. S., McGrew, C., McKean, J., Mefodiev, A., Megias, G. D., Mehta, P., Mellet, L., Menjo, H., Metelko, C., Mezzetto, M., Migenda, J., Mijakowski, P., Miki, S., Miller, E., Minamino, A., Mine, S., Mineev, O., Mirabito, J., Miura, M., Bueno, L. Molina, Moon, D. H., Mori, M., Moriyama, S., Morrison, P., Muñoz, A., Mueller, Th. A., Munford, D., Munteanu, L., Nagai, Y., Nagai, K., Nakadaira, T., Nakagiri, K., Nakahata, M., Nakajima, Y., Nakamura, A., Nakamura, K., Nakamura, K. D., Nakamura, T., Nakanishi, F., Nakano, Y., Nakaya, T., Nakayama, S., Nakayoshi, K., Naseby, C. E. R., Ngoc, T. V., Nguyen, V. Q., Nguyen, D. T., Nicholson, M., Niewczas, K., Ninomiya, K., Nishijima, K., Nishimori, S., Nishimura, Y., Noguchi, Y., Nosek, T., Nova, F., Novella, P., Nugent, J. C., Odagawa, T., Okazaki, R., Okazawa, H., Okinaga, W., Okumura, K., Okusawa, T., Ommura, Y., Onda, N., Ospina, N., Osu, L., Oyama, Y., O'Flaherty, M., O'Keeffe, H. M., O'Sullivan, L., Périssé, L., Paganini, P., Palladino, V., Paolone, V., Pari, M., Park, R. G., Parlone, J., Pasternak, J., Payne, D., Penn, G. C., de Perio, P., Pershey, D., Pfaff, M., Pickering, L., Pintaudi, G., Pistillo, C., Pointon, B. W., Popov, B., Yrey, A. Portocarrero, Porwit, K., Posiadala-Zezula, M., Prabhu, Y. S., Prasad, H., Pronost, G., Prouse, N. W., Pupilli, F., Quilain, B., Quyen, P. T., Raaf, J. L., Radermacher, T., Radicioni, E., Radics, B., Ramirez, M. A., Ramsden, R. M., Ratoff, P. N., Reh, M., Riccio, C., Richards, B., Rogly, R., Rondio, E., Roth, S., Roy, N., Rubbia, A., Russo, L., Rychter, A., Saenz, W., Sakai, S., Sakashita, K., Samani, S., Santos, A. D., Sato, Y., Sato, K., Schefke, T., Schloesser, C. M., Scholberg, K., Scott, M., Seiya, Y., Sekiguchi, T., Sekiya, H., Seo, J. W., Sgalaberna, D., Shaikhiev, A., Shi, W., Shiba, H., Shibayama, R., Shigeta, N., Shima, S., Shimamura, R., Shimizu, K., Shinoki, M., Shiozawa, M., Shiraishi, Y., Shvartsman, A., Skrobova, N., Skwarczynski, K., Smy, M. B., Smyczek, D., Sobczyk, J. T., Sobel, H. W., Soler, F. J. P., Sonoda, Y., Speers, A. J., Spina, R., Stroke, Y., Suslov, I. A., Suvorov, S., Suzuki, S., Suzuki, A., Suzuki, S. Y., Suzuki, Y., Sánchez, F., Tada, T., Tada, M., Tairafune, S., Takagi, Y., Takeda, A., Takemoto, Y., Takeuchi, Y., Takhistov, V., Takifuji, K., Tanaka, H., Tanaka, H. K., Tanigawa, H., Taniuchi, N., Tano, T., Tarrant, A., Tashiro, T., Teklu, A., Terada, K., Tereshchenko, V. V., Thamm, N., Thiesse, M. D., Thompson, L. F., Toki, W., Tomiya, T., Touramanis, C., Tsui, K. M., Tsukamoto, T., Tzanov, M., Uchida, Y., Vagins, M. R., Vargas, D., Varghese, M., Vasseur, G., Villa, E., Vinning, W. G. S., Virginet, U., Vladisavljevic, T., Wachala, T., Wakabayashi, D., Wallace, H. T., Walsh, J. G., Walter, C. W., Wan, L., Wang, X., Wang, Y., Wark, D., Wascko, M. O., Watanabe, E., Weber, A., Wendell, R. A., Wester, T., Wilking, M. J., Wilkinson, C., Wilson, S. T., Wilson, J. R., Wood, K., Wret, C., Wu, Y., Xia, J., Xie, Z., Xu, B. D., Xu, Y. -H., Yamamoto, K., Yamamoto, T., Yamauchi, K., Yanagisawa, C., Yang, G., Yang, B. S., Yang, J. Y., Yankelevich, A., Yano, T., Yasutome, K., Yershov, N., Yevarouskaya, U., Yokoyama, M., Yoo, J., Yoshida, T., Yoshida, S., Yoshimoto, Y., Yoshimura, N., Yoshioka, Y., Yu, M., Yu, I., Zaki, R., Zaldivar, B., Zalewska, A., Zalipska, J., Zaremba, K., Zarnecki, G., Zhang, J., Zhang, A. Q., Zhang, B., Zhao, X. Y., Zhong, H., Zhu, T., Ziembicki, M., Zimmerman, E. D., Zito, M., and Zsoldos, S.
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High Energy Physics - Experiment - Abstract
The Super-Kamiokande and T2K collaborations present a joint measurement of neutrino oscillation parameters from their atmospheric and beam neutrino data. It uses a common interaction model for events overlapping in neutrino energy and correlated detector systematic uncertainties between the two datasets, which are found to be compatible. Using 3244.4 days of atmospheric data and a beam exposure of $19.7(16.3) \times 10^{20}$ protons on target in (anti)neutrino mode, the analysis finds a 1.9$\sigma$ exclusion of CP-conservation (defined as $J_{CP}=0$) and a preference for the normal mass ordering., Comment: 12 pages, 4 figures
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- 2024
28. Parsimonious Optimal Dynamic Partial Order Reduction
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Abdulla, Parosh Aziz, Atig, Mohamed Faouzi, Das, Sarbojit, Jonsson, Bengt, and Sagonas, Konstantinos
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Computer Science - Programming Languages ,Computer Science - Software Engineering - Abstract
Stateless model checking is a fully automatic verification technique for concurrent programs that checks for safety violations by exploring all possible thread schedulings. It becomes effective when coupled with Dynamic Partial Order Reduction (DPOR), which introduces an equivalence on schedulings and reduces the amount of needed exploration. DPOR algorithms that are optimal are particularly effective in that they guarantee to explore exactly one execution from each equivalence class. Unfortunately, existing sequence-based optimal algorithms may in the worst case consume memory that is exponential in the size of the analyzed program. In this paper, we present Parsimonious-OPtimal DPOR (POP), an optimal DPOR algorithm for analyzing multi-threaded programs under sequential consistency, whose space consumption is polynomial in the worst case. POP combines several novel algorithmic techniques, including (i) a parsimonious race reversal strategy, which avoids multiple reversals of the same race, (ii) an eager race reversal strategy to avoid storing initial fragments of to-be-explored executions, and (iii) a space-efficient scheme for preventing redundant exploration, which replaces the use of sleep sets. Our implementation in Nidhugg shows that these techniques can significantly speed up the analysis of concurrent programs, and do so with low memory consumption. Comparison to TruSt, a related optimal DPOR algorithm that represents executions as graphs, shows that POP's implementation achieves similar performance for smaller benchmarks, and scales much better than TruSt's on programs with long executions.
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- 2024
29. Out-of-time-order asymptotic observables are quasi-isomorphic to time-ordered amplitudes
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Borsten, Leron, Jonsson, Simon, and Kim, Hyungrok
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High Energy Physics - Theory ,Mathematical Physics ,81T18 (Primary) 17B55, 18G50 (Secondary) - Abstract
Asymptotic observables in quantum field theory beyond the familiar $S$-matrix have recently attracted much interest, for instance in the context of gravity waveforms. Such observables can be understood in terms of Schwinger-Keldysh-type 'amplitudes' computed by a set of modified Feynman rules involving cut internal legs and external legs labelled by time-folds. In parallel, a homotopy-algebraic understanding of perturbative quantum field theory has emerged in recent years. In particular, passing through homotopy transfer, the $S$-matrix of a perturbative quantum field theory can be understood as the minimal model of an associated (quantum) $L_\infty$-algebra. Here we bring these two developments together. In particular, we show that Schwinger-Keldysh amplitudes are naturally encoded in an $L_\infty$-algebra, similar to ordinary scattering amplitudes. As before, they are computed via homotopy transfer, but using deformation-retract data that are not canonical (in contrast to the conventional $S$-matrix). We further show that the $L_\infty$-algebras encoding Schwinger-Keldysh amplitudes and ordinary amplitudes are quasi-isomorphic (meaning, in a suitable sense, equivalent). This entails a set of recursion relations that enable one to compute Schwinger-Keldysh amplitudes in terms of ordinary amplitudes or vice versa., Comment: 27 pages. Published version: typos corrected and the review in sec. 5.1 includes clarifying remarks
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- 2024
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30. The tangled warp of the Milky Way
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Jónsson, Viktor Hrannar and McMillan, Paul J.
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Astrophysics - Astrophysics of Galaxies - Abstract
We determine the influence of the Milky Way's warp on the kinematics of stars across the disc, and therefore measure its precession rate and line of nodes under different assumptions. We do this by applying Jeans' first equation to a model of a rigidly precessing warp. The predictions of these models are fit to the average vertical velocities of stars with measured line-of-sight velocities in Gaia DR3 data. We test models in which the warp's line of nodes and precession speed are fixed, and models in which they are allowed to vary linearly with radius. We also test models in which the velocity of stars radially in the disc is included in Jeans' equation. The kinematic data is best fit by models with a line of nodes that is 40 degrees offset from the Sun's Galactic azimuth, significantly leading the line of nodes found from the positions of stars. These models have a warp precession speed of around 13 km/s/kpc in the direction of Galactic rotation, close to other recent estimates. We find that including the velocity of stars radially in the disc in our kinematic model leads to a significantly worse fit to the data, and implausible warp parameters. We conclude that the Milky Way's warp appears to be rapidly precessing, but the structure and kinematics of the warped disc are not consistent within the approximation of a fixed, precessing, warp shape. This implies that the Milky Way's warp is dynamically evolving, which is a challenge to models of the warp's creation, and must be considered in the context of other known disturbances of the disc., Comment: Explainer video available at https://www.youtube.com/watch?v=8Wl81JC7l7k. A&A accepted. 13 pages, 10 figures
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- 2024
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31. Experimental Evaluation of Moving Target Compensation in High Time-Bandwidth Noise Radar
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Ankel, Martin, Jonsson, Robert S., Tholen, Mats, Bryllert, Tomas, Ulander, Lars M. H., and Delsing, Per
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Electrical Engineering and Systems Science - Signal Processing - Abstract
In this article, the effect a moving target has on the signal-to-interference-plus-noise-ratio (SINR) for high time-bandwidth noise radars is investigated. To compensate for cell migration we apply a computationally efficient stretch processing algorithm that is tailored for batched processing and suitable for implementation onto a real-time radar processor. The performance of the algorithm is studied using experimental data. In the experiment, pseudorandom noise, with a bandwidth of 100 MHz, is generated and transmitted in real-time. An unmanned aerial vehicle (UAV), flown at a speed of 11 m/s, is acting as a target. For an integration time of 1 s, the algorithm is shown to yield an increase in SINR of roughly 13 dB, compared to no compensation. It is also shown that coherent integration times of 2.5 s can be achieved., Comment: Presented at 2023 20th European Radar Conference (EuRAD)
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- 2024
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32. Planning with a Learned Policy Basis to Optimally Solve Complex Tasks
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Infante, Guillermo, Kuric, David, Jonsson, Anders, Gómez, Vicenç, and van Hoof, Herke
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Computer Science - Machine Learning ,Computer Science - Artificial Intelligence - Abstract
Conventional reinforcement learning (RL) methods can successfully solve a wide range of sequential decision problems. However, learning policies that can generalize predictably across multiple tasks in a setting with non-Markovian reward specifications is a challenging problem. We propose to use successor features to learn a policy basis so that each (sub)policy in it solves a well-defined subproblem. In a task described by a finite state automaton (FSA) that involves the same set of subproblems, the combination of these (sub)policies can then be used to generate an optimal solution without additional learning. In contrast to other methods that combine (sub)policies via planning, our method asymptotically attains global optimality, even in stochastic environments.
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- 2024
33. Identification of mechanisms of magnetic transitions using an efficient method for converging on first order saddle points
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Sallermann, Moritz, Schrautzer, Hendrik, Bessarab, Pavel, and Jónsson, Hannes
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Physics - Computational Physics ,Condensed Matter - Mesoscale and Nanoscale Physics - Abstract
A method for locating first order saddle points on the energy surface of magnetic systems is described and several applications presented. The starting point of the iterative algorithm involved in the method can be anywhere, even close to a local energy minimum representing an initial state of a magnetic system and, in contrast to chain-of-states methods, the final state need not be specified. Convergence on the saddle points is guided by a negative energy gradient whose component along the minimum mode of the system is inverted, effectively transforming the neighbourhood of the saddle point to that of a local minimum. The method requires only the lowest two eigenvalues and corresponding eigenvectors of the Hessian of the system's energy and they are found using a quasi-Newton limited-memory Broyden-Fletcher-Goldfarb-Shanno solver for the minimization of the Rayleigh quotient without evaluation of the Hessian itself. The efficient implementation of the method and its linear scaling with the system size make it applicable to large systems. Applications are presented to transitions in systems that reveal significant complexity of co-existing magnetic states, such as skyrmions, skyrmion bags, skyrmion tubes, chiral bobbers and globules., Comment: 16 Pages, 10 Figures
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- 2024
34. Regularity of the solution to a real Monge--Amp\`ere equation on the boundary of a simplex
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Andreasson, Rolf, Hultgren, Jakob, Jonsson, Mattias, Mazzon, Enrica, and McCleerey, Nicholas
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Mathematics - Analysis of PDEs ,Mathematics - Differential Geometry ,35J96, 53A15 (primary), 14J32, 14J33, 14T90, 32Q25 (secondary) - Abstract
Motivated by conjectures in Mirror Symmetry, we continue the study of the real Monge--Amp\`ere operator on the boundary of a simplex. This can be formulated in terms of optimal transport, and we consider, more generally, the problem of optimal transport between symmetric probability measures on the boundary of a simplex and of the dual simplex. For suitably regular measures, we obtain regularity properties of the transport map, and of its convex potential. To do so, we exploit boundary regularity results for optimal transport maps by Caffarelli, together with the symmetries of the simplex., Comment: 13 pages
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- 2024
35. Evidence of sharp transitions between octahedral and capped trigonal prism states of the solvation shell of Fe$^{+3}$(aq)
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Goswami, Amrita, Peña-Torres, Alejandro, Jónsson, Elvar Ö., Egorov, Sergei A., and Jónsson, Hannes
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Physics - Chemical Physics - Abstract
The structure of the solvation shell of aqueous Fe$^{+3}$ ion has been a subject of controversy due to discrepancies between experiments and different levels of theory. We address this issue by performing simulations for a wide range of ion concentrations, using various empirical potential energy functions, as well as density functional theory calculations of selected configurations. The solvation shell undergoes abrupt transitions between two states: an octahedral (OH) state with 6-fold coordination, and a capped trigonal prism (CTP) state with 7-fold coordination. The lifetime of these states is concentration dependent. In dilute $\mathrm{FeCl_3}$ solutions, the lifetime of the two states is similar ($\approx 1$ ns). However, the lifetime of the OH state increases with ion concentration, while that of the CTP state decreases slightly. When a uniform negative background charge is used instead of explicit counterions, the lifetime of the OH state is greatly overestimated. These findings underscore the need for further experimental measurements as well as high-level simulations over sufficiently long timescales and low concentration.
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- 2023
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36. Inhomogeneous Skin Formation and Its Effect on the Tensile Behavior of a High Pressure Die Cast Recycled Secondary AlSi10MnMg(Fe) Alloy
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Dalai, Biswajit, Jonsson, Simon, da Silva, Manel, Yu, Liang, and Kajberg, Jörgen
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- 2024
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37. Identification of meaningful individual-level change thresholds for worsening on the patient-reported outcomes version of the common terminology criteria for adverse events (PRO-CTCAE®)
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Lee, Minji K., Mitchell, Sandra A., Basch, Ethan, Mazza, Gina L., Langlais, Blake T., Thanarajasingam, Gita, Ginos, Brenda F., Rogak, Lauren, Meek, Eric A., Jansen, Jennifer, Deal, Allison M., Carr, Philip, Blinder, Victoria S., Jonsson, Mattias, Mody, Gita N., Mendoza, Tito R., Bennett, Antonia V., Schrag, Deborah, and Dueck, Amylou C.
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- 2024
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38. A longitudinal single-cell atlas of anti-tumour necrosis factor treatment in inflammatory bowel disease
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Thomas, Tom, Friedrich, Matthias, Rich-Griffin, Charlotte, Pohin, Mathilde, Agarwal, Devika, Pakpoor, Julia, Lee, Carl, Tandon, Ruchi, Rendek, Aniko, Aschenbrenner, Dominik, Jainarayanan, Ashwin, Voda, Alexandru, Siu, Jacqueline H. Y., Sanches-Peres, Raphael, Nee, Eloise, Sathananthan, Dharshan, Kotliar, Dylan, Todd, Peter, Kiourlappou, Maria, Gartner, Lisa, Ilott, Nicholas, Issa, Fadi, Hester, Joanna, Turner, Jason, Nayar, Saba, Mackerodt, Jonas, Zhang, Fan, Jonsson, Anna, Brenner, Michael, Raychaudhuri, Soumya, Kulicke, Ruth, Ramsdell, Danielle, Stransky, Nicolas, Pagliarini, Ray, Bielecki, Piotr, Spies, Noah, Marsden, Brian, Taylor, Stephen, Wagner, Allon, Klenerman, Paul, Walsh, Alissa, Coles, Mark, Jostins-Dean, Luke, Powrie, Fiona M., Filer, Andrew, Travis, Simon, Uhlig, Holm H., Dendrou, Calliope A., and Buckley, Christopher D.
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- 2024
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39. Using Nomograms Wisely: Predicting Sentinel Node Positivity in Melanoma
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Rojas-Garcia, Priscila, Ma, Bryan, Jonsson, Eva Lindell, Genereux, Olivia, McKinnon, Gregory, Brenn, Thomas, Assadzadeh, Golpira Elmi, and Temple-Oberle, Claire
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- 2024
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40. Performance and Micro-Pacing Strategies in Biathlon Skiing
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Staunton, Craig A., Jonsson Kårström, Malin, Björklund, Glenn, and Laaksonen, Marko S.
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- 2024
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41. Adult mental health outcomes of adolescent depression and co-occurring alcohol use disorder: a longitudinal cohort study
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Bohman, Hannes, Låftman, Sara Brolin, Alaie, Iman, Ssegonja, Richard, and Jonsson, Ulf
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- 2024
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42. Gene-based burden tests of rare germline variants identify six cancer susceptibility genes
- Author
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Ivarsdottir, Erna V., Gudmundsson, Julius, Tragante, Vinicius, Sveinbjornsson, Gardar, Kristmundsdottir, Snaedis, Stacey, Simon N., Halldorsson, Gisli H., Magnusson, Magnus I., Oddsson, Asmundur, Walters, G. Bragi, Sigurdsson, Asgeir, Saevarsdottir, Saedis, Beyter, Doruk, Thorleifsson, Gudmar, Halldorsson, Bjarni V., Melsted, Pall, Stefansson, Hreinn, Jonsdottir, Ingileif, Sørensen, Erik, Pedersen, Ole B., Erikstrup, Christian, Bøgsted, Martin, Pøhl, Mette, Røder, Andreas, Stroomberg, Hein Vincent, Gögenur, Ismail, Hillingsø, Jens, Bojesen, Stig E., Lassen, Ulrik, Høgdall, Estrid, Ullum, Henrik, Brunak, Søren, Ostrowski, Sisse R., Sonderby, Ida Elken, Frei, Oleksandr, Djurovic, Srdjan, Havdahl, Alexandra, Moller, Pal, Dominguez-Valentin, Mev, Haavik, Jan, Andreassen, Ole A., Hovig, Eivind, Agnarsson, Bjarni A., Hilmarsson, Rafn, Johannsson, Oskar Th., Valdimarsson, Trausti, Jonsson, Steinn, Moller, Pall H., Olafsson, Jon H., Sigurgeirsson, Bardur, Jonasson, Jon G., Tryggvason, Geir, Holm, Hilma, Sulem, Patrick, Rafnar, Thorunn, Gudbjartsson, Daniel F., and Stefansson, Kari
- Published
- 2024
- Full Text
- View/download PDF
43. Is the Position of Power More Relevant than Gender for Commercialization of Research? An Explorative Longitudinal Study over 21 Years
- Author
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Jonsson, Lars
- Published
- 2024
- Full Text
- View/download PDF
44. Preschool Teachers’ Experiences of Using Projected Images and Videos in Attempted Play-responsive Science Teaching
- Author
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Lund, Kristina, Redfors, Andreas, and Jonsson, Agneta
- Published
- 2024
- Full Text
- View/download PDF
45. Genetic architecture of oral glucose-stimulated insulin release provides biological insights into type 2 diabetes aetiology
- Author
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Madsen, A. L., Bonàs-Guarch, S., Gheibi, S., Prasad, R., Vangipurapu, J., Ahuja, V., Cataldo, L. R., Dwivedi, O., Hatem, G., Atla, G., Guindo-Martínez, M., Jørgensen, A. M., Jonsson, A. E., Miguel-Escalada, I., Hassan, S., Linneberg, A., Ahluwalia, Tarunveer S., Drivsholm, T., Pedersen, O., Sørensen, T. I. A., Astrup, A., Witte, D., Damm, P., Clausen, T. D., Mathiesen, E., Pers, T. H., Loos, R. J. F., Hakaste, L., Fex, M., Grarup, N., Tuomi, T., Laakso, M., Mulder, H., Ferrer, J., and Hansen, T.
- Published
- 2024
- Full Text
- View/download PDF
46. Tracheal intubation in critically ill adults with a physiologically difficult airway. An international Delphi study
- Author
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Karamchandani, Kunal, Nasa, Prashant, Jarzebowski, Mary, Brewster, David J., De Jong, Audrey, Bauer, Philippe R., Berkow, Lauren, Brown, III, Calvin A., Cabrini, Luca, Casey, Jonathan, Cook, Tim, Divatia, Jigeeshu Vasishtha, Duggan, Laura V., Ellard, Louise, Ergan, Begum, Jonsson Fagerlund, Malin, Gatward, Jonathan, Greif, Robert, Higgs, Andy, Jaber, Samir, Janz, David, Joffe, Aaron M., Jung, Boris, Kovacs, George, Kwizera, Arthur, Laffey, John G., Lascarrou, Jean-Baptiste, Law, J. Adam, Marshall, Stuart, McGrath, Brendan A., Mosier, Jarrod M., Perin, Daniel, Roca, Oriol, Rollé, Amélie, Russotto, Vincenzo, Sakles, John C., Shrestha, Gentle S., Smischney, Nathan J., Sorbello, Massimiliano, Tung, Avery, Jabaley, Craig S., and Myatra, Sheila Nainan
- Published
- 2024
- Full Text
- View/download PDF
47. The Impact of HCl on Alkali-Induced Corrosion of Stainless Steels/FeCrAl Alloy at 600 °C: The Story After Breakaway
- Author
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Ssenteza, Vicent, Jonsson, Torbjörn, Nockert, Johanna, and Liske, Jesper
- Published
- 2024
- Full Text
- View/download PDF
48. Genetic links between ovarian ageing, cancer risk and de novo mutation rates
- Author
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Stankovic, Stasa, Shekari, Saleh, Huang, Qin Qin, Gardner, Eugene J., Ivarsdottir, Erna V., Owens, Nick D. L., Mavaddat, Nasim, Azad, Ajuna, Hawkes, Gareth, Kentistou, Katherine A., Beaumont, Robin N., Day, Felix R., Zhao, Yajie, Jonsson, Hakon, Rafnar, Thorunn, Tragante, Vinicius, Sveinbjornsson, Gardar, Oddsson, Asmundur, Styrkarsdottir, Unnur, Gudmundsson, Julius, Stacey, Simon N., Gudbjartsson, Daniel F., Kennedy, Kitale, Wood, Andrew R., Weedon, Michael N., Ong, Ken K., Wright, Caroline F., Hoffmann, Eva R., Sulem, Patrick, Hurles, Matthew E., Ruth, Katherine S., Martin, Hilary C., Stefansson, Kari, Perry, John R. B., and Murray, Anna
- Published
- 2024
- Full Text
- View/download PDF
49. Saproxylic beetles in Swedish boreal production forests in relation to local and landscape factors
- Author
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Gustafsson, Lena, Andersson, Jon, Jonsson, Mattias, Jönsson, Mari, Löfroth, Therese, Strengbom, Joachim, Weslien, Jan-Olov, and Johansson, Victor
- Published
- 2024
- Full Text
- View/download PDF
50. Patient-Reported Outcomes After Switching to a 2-Drug Regimen of Fixed-Dose Combination Dolutegravir/Lamivudine: 48-Week Results from the SALSA Study
- Author
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Kumar, Princy, Clarke, Amanda E., Jonsson-Oldenbüttel, Celia, Deltoro, Miguel García, Di Giambenedetto, Simona, Brites, Carlos, Hocqueloux, Laurent, Lu, Po-Liang, Oyee, James, Oglesby, Alan, Wynne, Brian, Jones, Bryn, Evitt, Lee A., Fox, Dainielle, Kisare, Michelle, and Priest, Julie
- Published
- 2024
- Full Text
- View/download PDF
Catalog
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