205 results on '"Jonghe S"'
Search Results
2. Open science discovery of potent noncovalent SARS-CoV-2 main protease inhibitors.
- Author
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Boby, M.L., Fearon, D., Ferla, M., Filep, M., Koekemoer, L., Robinson, M.C., Chodera, J.D., Lee, A.A., London, N., Delft, A. von, Delft, F. von, Achdout, H., Aimon, A., Alonzi, D.S., Arbon, R., Aschenbrenner, J.C., Balcomb, B.H., Bar-David, E., Barr, H., Ben-Shmuel, A., Bennett, J., Bilenko, V.A., Borden, B., Boulet, P., Bowman, G.R., Brewitz, L., Brun, J., Bvnbs, S., Calmiano, M., Carbery, A., Carney, D.W., Cattermole, E., Chang, E., Chernyshenko, E., Clyde, A., Coffland, J.E., Cohen, G., Cole, J.C., Contini, A., Cox, L., Croll, T.I., Cvitkovic, M., Jonghe, S. De, Dias, A., Donckers, K., Dotson, D.L., Douangamath, A., Duberstein, S., Dudgeon, T., Dunnett, L.E., Eastman, P., Erez, N., Eyermann, C.J., Fairhead, M., Fate, G., Fedorov, O., Fernandes, R.S., Ferrins, L., Foster, R., Foster, H., Fraisse, L., Gabizon, R., García-Sastre, A., Gawriljuk, V.O., Gehrtz, P., Gileadi, C., Giroud, C., Glass, W.G., Glen, R.C., Glinert, I., Godoy, A.S., Gorichko, M., Gorrie-Stone, T., Griffen, E.J., Haneef, A., Hassell Hart, S, Heer, J., Henry, M., Hill, M., Horrell, S., Huang, Q.Y.J., Huliak, V.D., Hurley, M.F.D., Israely, T., Jajack, A., Jansen, J, Jnoff, E., Jochmans, D., John, T., Kaminow, B., Kang, L., Kantsadi, A.L., Kenny, P.W., Kiappes, J.L., Kinakh, S.O., Kovar, B., Krojer, T., La, V.N.T., Laghnimi-Hahn, S., Lefker, B.A., Levy, H., Lithgo, R.M., Logvinenko, I.G., Lukacik, P., Macdonald, H.B., MacLean, E.M., Makower, L.L., Malla, T.R., Marples, P.G., Matviiuk, T., McCorkindale, W., McGovern, B.L., Melamed, S., Melnykov, K.P., Michurin, O., Miesen, P., Mikolajek, H., Milne, B.F., Minh, D., Morris, A., Morris, G.M., Morwitzer, M.J., Moustakas, D., Mowbray, C.E., Nakamura, A.M., Neto, J.B., Neyts, J., Nguyen, L, Noske, G.D., Oleinikovas, V., Oliva, G., Overheul, G.J., Owen, C.D., Pai, R., Pan, J., Paran, N., Payne, A.M., Perry, B., Pingle, M., Pinjari, J., Politi, B., Powell, A., Pšenák, V., Pulido, I., Puni, R., Rangel, V.L., Reddi, R.N., Rees, P., Reid, S.P., Reid, L., Resnick, E., Ripka, E.G., Robinson, R.P., Rodriguez-Guerra, J., Rosales, R., Rufa, D.A., Saar, K., Saikatendu, K.S., Salah, E., Schaller, D., Scheen, J., Schiffer, C.A., Schofield, C.J., Shafeev, M., Shaikh, A., Shaqra, A.M., Shi, J., Shurrush, K., Singh, S., Sittner, A., Sjö, P., Skyner, R., Smalley, A., Smeets, B., Smilova, M.D., Solmesky, L.J., Spencer, J., Strain-Damerell, C., Swamy, V., Tamir, H., Taylor, J.C., Tennant, R.E., Thompson, W., Thompson, A., Tomásio, S., Tomlinson, C.W.E., Tsurupa, I.S., Tumber, A., Vakonakis, I., Rij, R.P. van, Vangeel, L., Varghese, F.S., Vaschetto, M., Vitner, E.B., Voelz, V., Volkamer, A., Walsh, M.A., Ward, W., Weatherall, C., Weiss, S., White, K.M., Wild, C.F., Witt, K.D., Wittmann, M., Wright, N., Yahalom-Ronen, Y., Yilmaz, N.K., Zaidmann, D., Zhang, I., Zidane, H., Zitzmann, N., Zvornicanin, S.N., Boby, M.L., Fearon, D., Ferla, M., Filep, M., Koekemoer, L., Robinson, M.C., Chodera, J.D., Lee, A.A., London, N., Delft, A. von, Delft, F. von, Achdout, H., Aimon, A., Alonzi, D.S., Arbon, R., Aschenbrenner, J.C., Balcomb, B.H., Bar-David, E., Barr, H., Ben-Shmuel, A., Bennett, J., Bilenko, V.A., Borden, B., Boulet, P., Bowman, G.R., Brewitz, L., Brun, J., Bvnbs, S., Calmiano, M., Carbery, A., Carney, D.W., Cattermole, E., Chang, E., Chernyshenko, E., Clyde, A., Coffland, J.E., Cohen, G., Cole, J.C., Contini, A., Cox, L., Croll, T.I., Cvitkovic, M., Jonghe, S. De, Dias, A., Donckers, K., Dotson, D.L., Douangamath, A., Duberstein, S., Dudgeon, T., Dunnett, L.E., Eastman, P., Erez, N., Eyermann, C.J., Fairhead, M., Fate, G., Fedorov, O., Fernandes, R.S., Ferrins, L., Foster, R., Foster, H., Fraisse, L., Gabizon, R., García-Sastre, A., Gawriljuk, V.O., Gehrtz, P., Gileadi, C., Giroud, C., Glass, W.G., Glen, R.C., Glinert, I., Godoy, A.S., Gorichko, M., Gorrie-Stone, T., Griffen, E.J., Haneef, A., Hassell Hart, S, Heer, J., Henry, M., Hill, M., Horrell, S., Huang, Q.Y.J., Huliak, V.D., Hurley, M.F.D., Israely, T., Jajack, A., Jansen, J, Jnoff, E., Jochmans, D., John, T., Kaminow, B., Kang, L., Kantsadi, A.L., Kenny, P.W., Kiappes, J.L., Kinakh, S.O., Kovar, B., Krojer, T., La, V.N.T., Laghnimi-Hahn, S., Lefker, B.A., Levy, H., Lithgo, R.M., Logvinenko, I.G., Lukacik, P., Macdonald, H.B., MacLean, E.M., Makower, L.L., Malla, T.R., Marples, P.G., Matviiuk, T., McCorkindale, W., McGovern, B.L., Melamed, S., Melnykov, K.P., Michurin, O., Miesen, P., Mikolajek, H., Milne, B.F., Minh, D., Morris, A., Morris, G.M., Morwitzer, M.J., Moustakas, D., Mowbray, C.E., Nakamura, A.M., Neto, J.B., Neyts, J., Nguyen, L, Noske, G.D., Oleinikovas, V., Oliva, G., Overheul, G.J., Owen, C.D., Pai, R., Pan, J., Paran, N., Payne, A.M., Perry, B., Pingle, M., Pinjari, J., Politi, B., Powell, A., Pšenák, V., Pulido, I., Puni, R., Rangel, V.L., Reddi, R.N., Rees, P., Reid, S.P., Reid, L., Resnick, E., Ripka, E.G., Robinson, R.P., Rodriguez-Guerra, J., Rosales, R., Rufa, D.A., Saar, K., Saikatendu, K.S., Salah, E., Schaller, D., Scheen, J., Schiffer, C.A., Schofield, C.J., Shafeev, M., Shaikh, A., Shaqra, A.M., Shi, J., Shurrush, K., Singh, S., Sittner, A., Sjö, P., Skyner, R., Smalley, A., Smeets, B., Smilova, M.D., Solmesky, L.J., Spencer, J., Strain-Damerell, C., Swamy, V., Tamir, H., Taylor, J.C., Tennant, R.E., Thompson, W., Thompson, A., Tomásio, S., Tomlinson, C.W.E., Tsurupa, I.S., Tumber, A., Vakonakis, I., Rij, R.P. van, Vangeel, L., Varghese, F.S., Vaschetto, M., Vitner, E.B., Voelz, V., Volkamer, A., Walsh, M.A., Ward, W., Weatherall, C., Weiss, S., White, K.M., Wild, C.F., Witt, K.D., Wittmann, M., Wright, N., Yahalom-Ronen, Y., Yilmaz, N.K., Zaidmann, D., Zhang, I., Zidane, H., Zitzmann, N., and Zvornicanin, S.N.
- Abstract
Item does not contain fulltext, We report the results of the COVID Moonshot, a fully open-science, crowdsourced, and structure-enabled drug discovery campaign targeting the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) main protease. We discovered a noncovalent, nonpeptidic inhibitor scaffold with lead-like properties that is differentiated from current main protease inhibitors. Our approach leveraged crowdsourcing, machine learning, exascale molecular simulations, and high-throughput structural biology and chemistry. We generated a detailed map of the structural plasticity of the SARS-CoV-2 main protease, extensive structure-activity relationships for multiple chemotypes, and a wealth of biochemical activity data. All compound designs (>18,000 designs), crystallographic data (>490 ligand-bound x-ray structures), assay data (>10,000 measurements), and synthesized molecules (>2400 compounds) for this campaign were shared rapidly and openly, creating a rich, open, and intellectual property-free knowledge base for future anticoronavirus drug discovery.
- Published
- 2023
3. Mouse organoids as an in vitro tool to study the in vivo intestinal response to cytotoxicants
- Author
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Jardi, F., primary, Kelly, C., additional, Teague, C., additional, Fowler-Williams, H., additional, Sevin, D. C., additional, Rodrigues, D., additional, Jo, H., additional, Ferreira, S., additional, Herpers, B., additional, Van Heerden, M., additional, de Kok, T., additional, Pin, C., additional, Lynch, A., additional, Duckworth, C. A., additional, De Jonghe, S., additional, Lammens, L., additional, and Pritchard, D. M., additional
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- 2022
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4. Methods to evaluate and improve the injection site tolerability of intravenous formulations prior to first-in-human testing
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Eichenbaum, G., Zhou, J., De Smedt, A., De Jonghe, S., Looszova, A., Arien, T., Van Goethem, F., Vervoort, I., Shukla, U., and Lammens, L.
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- 2013
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5. P07-12 Impaired renal function is a confounding factor in the use of plasma citrulline as a marker of intestinal toxicity in rodents
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Jardi, F., van Heerden, M., Chamanza, R., Frisk, A.-L., Verslegers, M., De Jonghe, S., Breidenbach, L., Trairatphisan, P., Kunnen, S., Wijaya, L.S., Feyen, B., Blasco, N. Maicas, and Yanochko-Hoffman, G.
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- 2024
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6. The oral protease inhibitor (PF-07321332) protects Syrian hamsters against infection with SARS-CoV-2 variants of concern
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Abdelnabi, R, Foo, CS, Jochmans, D, Vangeel, L, De Jonghe, S, Augustijns, P, Mols, R, Weynand, B, Wattanakul, T, Hoglund, RM, Tarning, J, Mowbray, CE, Sjö, P, Escudié, F, Scandale, I, Chatelain, E, and Neyts, J
- Subjects
Multidisciplinary ,Lactams ,Mesocricetus ,Proline ,Viral Protease Inhibitors ,SARS-CoV-2 ,fungi ,General Physics and Astronomy ,Administration, Oral ,COVID-19 ,General Chemistry ,Respiratory Mucosa ,Virus Replication ,General Biochemistry, Genetics and Molecular Biology ,COVID-19 Drug Treatment ,Disease Models, Animal ,A549 Cells ,Leucine ,Cricetinae ,Chlorocebus aethiops ,Nitriles ,Animals ,Humans ,Vero Cells ,Coronavirus 3C Proteases - Abstract
There is an urgent need for potent and selective antivirals against SARS-CoV-2. Pfizer developed PF-07321332 (PF-332), a potent inhibitor of the viral main protease (Mpro, 3CLpro) that can be dosed orally and that is in clinical development. We here report that PF-332 exerts equipotent in vitro activity against the four SARS-CoV-2 variants of concerns (VoC) and that it can completely arrest replication of the alpha variant in primary human airway epithelial cells grown at the air-liquid interface. Treatment of Syrian Golden hamsters with PF-332 (250 mg/kg, twice daily) completely protected the animals against intranasal infection with the beta (B.1.351) and delta (B.1.617.2) SARS-CoV-2 variants. Moreover, treatment of SARS-CoV-2 (B.1.617.2) infected animals with PF-332 completely prevented transmission to untreated co-housed sentinels. ispartof: NATURE COMMUNICATIONS vol:13 issue:1 ispartof: location:England status: published
- Published
- 2021
7. HIV-1 REVERSE TRANSCRIPTASE COMPLEX WITH DNA AND D-ASPARTATE TENOFOVIR WITH BOUND MANGANESE
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Gu, W., primary, Martinez, S.E., additional, Nguyen, H., additional, Xu, H., additional, Herdewijn, P., additional, de Jonghe, S., additional, and Das, K., additional
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- 2021
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8. HIV-1 REVERSE TRANSCRIPTASE COMPLEX WITH DNA AND L-GLUTAMATE TENOFOVIR WITH BOUND MANGANESE
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Gu, W., primary, Martinez, S.E., additional, Nguyen, H., additional, Xu, H., additional, Herdewijn, P., additional, de Jonghe, S., additional, and Das, K., additional
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- 2021
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9. HIV-1 REVERSE TRANSCRIPTASE COMPLEX WITH DNA AND L-METHIONINE TENOFOVIR
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Gu, W., primary, Martinez, S.E., additional, Nguyen, H., additional, Xu, H., additional, Herdewijn, P., additional, de Jonghe, S., additional, and Das, K., additional
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- 2021
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10. HIV-1 REVERSE TRANSCRIPTASE COMPLEX WITH DNA AND L-METHIONINE TENOFOVIR WITH BOUND MANGANESE
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Gu, W., primary, Martinez, S.E., additional, Nguyen, H., additional, Xu, H., additional, Herdewijn, P., additional, de Jonghe, S., additional, and Das, K., additional
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- 2021
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11. HIV-1 REVERSE TRANSCRIPTASE COMPLEX WITH DNA AND L-GLUTAMATE TENOFOVIR
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Gu, W., primary, Martinez, S.E., additional, Nguyen, H., additional, Xu, H., additional, Herdewijn, P., additional, de Jonghe, S., additional, and Das, K., additional
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- 2021
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12. Transcriptomic approach to improve the understanding of 5-fluorouracil (5-FU) induced intestinal toxicity in vitro and in vivo
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Rodrigues, D. F., de Souza, T., Coyle, L., Schrooders, Y., Jardi, F., de Jonghe, S., van Heerden, M., Lammens, L., Jennen, D., Kleinjans, J. C., de Kok, T. M., Toxicogenomics, RS: GROW - R1 - Prevention, RS: MHeNs - R3 - Neuroscience, RS: FSE MaCSBio, RS: FPN MaCSBio, and RS: FHML MaCSBio
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- 2019
13. Optimization of a 5-Fluorouracil-induced intestinal injury model in mice to construct a multi-scale predictive model of drug-induced intestinal toxicity
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Jardi, F., Van Heerden, M., Vereyken, L., Erkens, T., Rodrigues, D. F., Kleinjans, J. C. S., de Kok, T. M., Ferreria, S., Gardner, I., Fisher, C., Pritchard, M., Lynch, A., Sevin, D., Beattie, K., Pin, C., Lammens, L., de Jonghe, S., Toxicogenomics, RS: MHeNs - R3 - Neuroscience, RS: GROW - R1 - Prevention, RS: FSE MaCSBio, RS: FPN MaCSBio, and RS: FHML MaCSBio
- Published
- 2019
14. Synthesis of a 3′-Deoxy-C-Nucleoside Phosphonate Bearing 9-Deazaadenine as Base Moiety
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Nie, P., Groaz, E., De Jonghe, S., Andrei, G., and Herdewijn, P.
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Nucleoside mimics ,C-Nucleosides ,Glycosylation ,Epimerization ,Phosphonates - Published
- 2018
15. Substrate-dependence of competitive nucleotide pyrophosphatase / phosphodiesterase1 (NPP1)
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Lee, S.-Y., Sarkar, S., Bhattarai, S., Namasivayam, V., Jonghe, S., Stephan, H., Herdewijn, P., El-Tayeb, A., and Müller, C. E.
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enzyme assay ,NPP1 inhibitors ,nucleotide pyrophosphatase 1 ,NPP1 ,Ectonucleotidase inhibitors ,p-nitrophenyl 5'-thymidine monophosphate - Abstract
Nucleotide pyrophosphatase / phosphodiesterase type 1 (NPP1) is a membrane glycoprotein involved in the hydrolysis of extracellular nucleotides. Its major substrate is ATP which is converted to AMP and diphosphate. NPP1 was proposed as a new therapeutic target in brain cancer and immuno-oncology. Several NPP1 inhibitors have been reported to date, most of which were evaluated versus the artificial substrate p-nitrophenyl 5’-thymidine monophosphate (p-Nph-5’-TMP). Recently, we observed large discrepancies in inhibitory potencies for a class of competitive NPP1 inhibitors when tested versus the artificial substrate p-Nph-5’-TMP as compared to the natural substrate ATP. Therefore, the goal of the present study was to investigate whether inhibitors of human NPP1 generally display substrate dependent inhibitory potency. Systematic evaluation of nucleotidic as well as non-nucleotidic NPP1 inhibitors revealed significant differences in determined Ki values for competitive, but not for non- and un-competitive inhibitors when tested versus the frequently used artificial substrate p-Nph-5’-TMP as compared to ATP. Allosteric modulation of NPP1 by p-Nph-5’- TMP may explain these discrepancies. Results obtained using the AMP derivative p41 nitrophenyl 5’-adenosine monophosphate (p-Nph-5’-AMP) as an alternative artificial substrate correlated much better with those employing the natural substrate ATP.
- Published
- 2017
16. Comparative pathogenesis of a subtype A with a subtype B avian pneumovirus in turkeys
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Van de Zande S, De Jonghe S, Hans Nauwynck, and Maurice Pensaert
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Pathology ,medicine.medical_specialty ,Air sacs ,General Immunology and Microbiology ,medicine.diagnostic_test ,Biology ,Immunofluorescence ,Virology ,Virus ,Avian pneumovirus ,Pathogenesis ,medicine.anatomical_structure ,Food Animals ,Viral replication ,medicine ,Animal Science and Zoology ,Respiratory system ,Respiratory tract - Abstract
This paper describes a study in which the pathogenesis of avian pneumovirus strains, isolated in Belgium, and belonging to the two subtypes A and B, were compared in 2-week-old turkeys. After oculonasal inoculation, animals were either observed for clinical signs or killed for pathological and virological examination. Virus titration and immunofluorescence were performed on the conjunctivae, turbinates, sinuses, upper and lower part of the trachea, lungs and air sacs. No differences were seen between the two subtypes concerning respiratory signs, or macroscopic and microscopic lesions in the respiratory tract. Slight variations were found in site and extent of virus replication. First, only subtype A was able to invade the lower parts of the respiratory tract (bronchi), whereas viral antigens were not detected in the lungs with subtype B. Secondly, the subtype A strain infected two times more epithelial cells at all levels of the upper respiratory tract compared to subtype B. Thirdly, the amount of virus produced at different sites along the respiratory tract was lower in subtype B-inoculated turkeys than in subtype A-inoculated ones.
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- 2016
17. Liver monocytes and kupffer cells remain transcriptionally distinct during chronic viral infection
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Garde, M.D.B. (Martijn) van de, Movita, D. (Dowty), Van Der Heide, M. (Marieke), Herschke, F. (Florence), De Jonghe, S. (Sandra), Gama, L. (Lucio), Boonstra, P.A. (André), Vanwolleghem, T. (Thomas), Garde, M.D.B. (Martijn) van de, Movita, D. (Dowty), Van Der Heide, M. (Marieke), Herschke, F. (Florence), De Jonghe, S. (Sandra), Gama, L. (Lucio), Boonstra, P.A. (André), and Vanwolleghem, T. (Thomas)
- Abstract
Due to the scarcity of immunocompetent animal models for chronic viral hepatitis, little is known about the role of the innate intrahepatic immune system during viral replication in the liver. These insights are however fundamental for the understanding of the inappropriate adaptive immune responses during the chronic phase of the infection. We apply the Lymphocytic Choriomenigitis Virus (LCMV) clone 13 mouse model to examine chronic virus-host interactions of Kupffer cells (KC) and infiltrating monocytes (IM) in an infected liver. LCMV infection induced overt clin
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- 2016
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18. Liver Monocytes and Kupffer Cells Remain Transcriptionally Distinct during Chronic Viral Infection
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Garde, Martijn, Movita, Dowty, Mulder, Marieke, Herschke, F, De Jonghe, S, Gama, L, Boonstra, Andre, Vanwolleghem, Thomas, Garde, Martijn, Movita, Dowty, Mulder, Marieke, Herschke, F, De Jonghe, S, Gama, L, Boonstra, Andre, and Vanwolleghem, Thomas
- Published
- 2016
19. Inflammatory monocytes recruited to the liver within 24 hours after virus-induced inflammation resemble kupffer cells but are functionally distinct
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Movita, D. (Dowty), Garde, M.D.B. (Martijn) van de, Biesta, P.J. (Paula), Kreefft, K. (Kim), Haagmans, B.L. (Bart), Zuniga, E. (Elina), Herschke, F. (Florence), De Jonghe, S. (Sandra), Janssen, H.L.A. (Harry), Gama, L. (Lucio), Boonstra, P.A. (André), Vanwolleghem, T. (Thomas), Movita, D. (Dowty), Garde, M.D.B. (Martijn) van de, Biesta, P.J. (Paula), Kreefft, K. (Kim), Haagmans, B.L. (Bart), Zuniga, E. (Elina), Herschke, F. (Florence), De Jonghe, S. (Sandra), Janssen, H.L.A. (Harry), Gama, L. (Lucio), Boonstra, P.A. (André), and Vanwolleghem, T. (Thomas)
- Abstract
Due to a scarcity of immunocompetent animal models for viral hepatitis, little is known about the early innate immune responses in the liver. In various hepatotoxic models, both pro- and anti-inflammatory activities of recruited monocytes have been described. In this study, we compared the effect of liver inflammation induced by the Toll-like receptor 4 ligand lipopolysaccharide (LPS) with that of a persistent virus, lymphocytic choriomeningitis virus (LCMV) clone 13, on early innate intrahepatic immune responses in mice. LCMV infection induces a remarkable influx of inflammatory monocytes in the liver within 24 h, accompanied by increased transcript levels of several proinflammatory cytokines and chemokines in whole liver. Importantly, while a single LPS injection results in similar recruitment of inflammatory monocytes to the liver, the functional properties of the infiltrating cells are dramatically different in response to LPS versus LCMV infection. In fact, intrahepatic inflammatory monocytes are skewed toward a secretory phenotype with impaired phagocytosis in LCMV-induced liver inflammation but exhibit increased endocytic capacity after LPS challenge. In contrast, F4/80high-Kupffer cells retain their steady-state endocytic functions upon LCMV infection. Strikingly, the gene expression levels of inflammatory monocytes dramatically change upon LCMV exposure and resemble those of Kupffer cells. Since inflammatory monocytes outnumber Kupffer cells 24 h after LCMV infection, it is highly likely that inflammatory monocytes contribute to the intrahepatic inflammatory response during the early phase of infection. Our findings are instrumental in understanding the early immunological events during virus-induced liver disease and point toward inflammatory monocytes as potential target cells for future treatment options in viral hepatitis.
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- 2015
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20. Evaluation of miR122, and protein markers as potential biomarkers for acute hepatic injury in rats
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Verheyen, G.R., primary, Starckx, S., additional, De Jonghe, S., additional, Steemans, K., additional, Batheja, A., additional, Vinken, P., additional, Van Gompel, J., additional, and Lammens, L., additional
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- 2011
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21. Analysis of clinical relevance of cardiac lesions seen in a high dose rat from a toxicity study
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Hanton, G., primary, De Jonghe, S., additional, Roosen, W., additional, Lammens, L., additional, Vynckier, A., additional, and Martens, M., additional
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- 2010
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22. Miscellaneous
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De Jonghe, S., primary, Lammens, L., additional, Raoof, A., additional, Steemans, K., additional, Broeckaert, F., additional, Verbeeck, J., additional, Van Goethem, F., additional, and Hanton, G., additional
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- 2009
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23. Comparative pathogenesis of a subtype A with a subtype B avian pneumovirus in turkeys
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Van de Zande, Saskia, primary, Nauwynck, H., additional, De Jonghe, S., additional, and Pensaert, M., additional
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- 1999
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24. High incidence of otognathia in a sheep population
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De Jonghe, S., primary, Ramakers, B., additional, Simoens, P., additional, and Ducatelle, R., additional
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- 1999
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25. Verrucous endocarditis due to Escherichia coli in a Persian cat
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De Jonghe, S., primary, Ducatelle, R., additional, Haesebrouck, F., additional, and Roels, S., additional
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- 1998
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26. Miscellaneous: P17: Lethal rhinitis/sinusitis in rodents by aspiration of formulation in gavage studies: Importance of evaluation of the nose
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De Jonghe, S., Lammens, L., Raoof, A., Steemans, K., Broeckaert, F., Verbeeck, J., Van Goethem, F., and Hanton, G.
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- 2009
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27. Synthesis and Biological Evaluation of Ceramide Analogues with Substituted Aromatic Rings or an Allylic Fluoride in the Sphingoid Moiety
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Overmeire, I. Van, Boldin, S. A., Venkataraman, K., Zisling, R., Jonghe, S. De, Calenbergh, S. Van, Keukeleire, D. De, Futerman, A. H., and Herdewijn, P.
- Abstract
The biological activity of synthetic ceramide analogues, having modified sphingoid and N-acyl chains, as well as fluorine substituents in the allylic position, was investigated in hippocampal neurons. Their influence on axonal growth was compared to that of C
6 -N-acyl analogues of natural ceramides.d -erythro-Ceramides with a phenyl group in the sphingoid moiety and a short N-acyl chain were able to reverse the inhibitory effect of fumonisin B1 (FB1 ), but not ofd -threo-1-phenyl-2-decanoylamino-3-morpholino-1-propanol (PDMP), on accelerated axonal growth in hippocampal neurons. Moreover, we demonstrated that a ceramide analogue with an aromatic ring in the sphingoid moiety is recognized as a substrate by glucosylceramide synthase, which suggests that the observed biological effects are mediated by activation of the ceramide analogue via glucosylation. Introduction of a methyl, pentyl, fluoro, or methoxy substituent in the para position of the phenyl ring in the sphingoid moiety yielded partly active compounds. Likewise, substitution of the benzene ring for a thienyl group did not abolish the ability to reverse the inhibition of accelerated axonal growth by FB1 . Bothd -erythro- andl -threo-ceramide analogues, having an allylic fluorine substituent, partly reversed the FB1 inhibition.- Published
- 2000
28. Synthesis and Apoptogenic Activity of Fluorinated Ceramide and Dihydroceramide Analogues
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Jonghe, S. De, Overmeire, I. Van, Gunst, J., Bruyn, A. De, Hendrix, C., Calenbergh, S. Van, Busson, R., Keukeleire, D. De, Philippe, J., and Herdewijn, P.
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- 1999
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29. Structure-Activity Relationship of Short-Chain Sphingoid Bases as Inhibitors of Sphingosine Kinase
- Author
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Jonghe, S. De, Overmeire, I. Van, Poulton, S., Hendrix, C., Busson, R., Calenbergh, S. Van, Keukeleire, D. De, Spiegel, S., and Herdewijn, P.
- Published
- 1999
- Full Text
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30. Verrucous endocarditis due to Escherichia coliin a Persian cat
- Author
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De Jonghe, S., Ducatelle, R., Haesebrouck, F., and Roels, S.
- Abstract
Verrucous endocarditis of the aortic valves was diagnosed postmortem in a Persian cat that died after showing clinical signs of dyspnoea, hypothermia and anorexia. Bacterial colonies were evident on Giemsa‐stained sections of the valves and Escherichia coliwas isolated from the endocarditis lesions.
- Published
- 1998
- Full Text
- View/download PDF
31. Thoracoabdominal aortic aneurysm in two ponies.
- Author
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Simoens, P., Vercruysse, J., De Jonghe, S., and Ducatelle, R.
- Published
- 1999
32. Synthesis and biological evaluation of C-nucleoside analogues : Synthese en biologische evaluatie van C-nucleoside analogen
- Author
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Nie, P, De Jonghe, S, Groaz, E, and Herdewyn, P
- Abstract
C-Nucleosides are an important family of compounds with promising biological activities. In C-nucleosides, the labile C-N glycosidic linkage of classical N-nucleosides is replaced by a more stable C-C bond, which makes C-nucleosides resistant against hydrolysis. Some naturally occurring C-nucleosides such as formycin and showdomycin are potent antibiotics, while pseudouridine, an isomer of uridine, is able to stabilize RNA duplexes by replacing uridine. A number of synthetic C-nucleosides display potent antiviral activity. The most significant examples are BCX4430 (galidesivir) and GS-5734 (remdesivir), which are both currently being developed as drugs for the treatment of Ebola virus (EBOV) infections. Nucleoside phosphonates are isosteres of nucleoside monophosphates, in which the labile P-O bond is substituted by a stable P-C bond. Hence, nucleoside phosphonates possess an improved metabolic stability against phosphatase-catalyzed hydrolysis. In addition, the presence of a phosphonate moiety allows to skip the first phosphorylation step that is required for nucleoside activation. The most successful examples of nucleoside phosphonates are acyclic nucleoside phosphonates, such as adefovir, tenofovir, and cidofovir, which received marketing approval as antiviral drugs. The main goal of this Ph.D. thesis was to investigate the chemical and biological properties of novel C-nucleosides as well as C-nucleoside phosphonates. To this aim, 9-deazaadenine and pyrrolo[2,1-f][1,2,4]triazin-4-amine were selected as nucleobases, based on their promising biological profile. In the first part of this thesis (Chapter 2), the synthesis and antiviral evaluation of a 5'-phosphonate-C-nucleoside with 9-deazaadenine as nucleobase is described. The initial introduction of a phosphonate moiety onto a benzoyl protected 5'-acetoxy-[2'S]-9-deazaadenosine derivative was unsatisfactory, since an unexpected epimerization at the 2'-position occurred upon removal of the benzoyl groups under basic conditions. However, an efficient synthetic route was established through the stereoselective installation of the phosphonomethoxy group at the anomeric 5'-position of [5'R]-acetoxy-[2'R]-9-deazaadenosine, followed by a base-promoted epimerization reaction to provide the desired [2'S] compound. Such C-nucleoside phosphonate and its prodrug were submitted for antiviral evaluation against a panel of RNA viruses such as RSV, Zika virus, Influenza A H1N1, Polio virus, and MERS coronavirus. Unfortunately, no significant antiviral activity or cytotoxicity was observed. To further study the properties of 5'-phosphonate-C-nucleosides, a 3'-deoxy derivative and its corresponding phosphonoamidate prodrug were synthesized, as discussed in Chapter 3. The 2'-deoxy-9-deazaadenosine derivative was prepared from a 2'-bromo intermediate via reduction under Barton-McCombie deoxygenation conditions. The target 5'-phosphonate-3'-deoxy-C-nucleoside was then obtained by a base-promoted epimerization reaction as established in Chapter 2. The assessment of the antiviral activity of this 5'-phosphonate-3'-deoxy-C-nucleoside and its prodrug against a number of DNA viruses (including HSV, CMV, and VZV) revealed that they completely lacked antiviral activity and cytotoxicity. In Chapter 4, the synthesis and antiproliferative evaluation of xylo-C-nucleosides containing pyrrolo[2,1-f][1,2,4]triazin-4-amine as nucleobase are described. The synthesis started with the coupling between a benzyl protected d-xylono-1,4-lactone and 4-(methylthio)pyrrolo[2,1-f][1,2,4]triazine under basic conditions. A survey of several reaction conditions for the deprotection of the benzyl groups revealed that a palladium-catalyzed hydrogen transfer reaction allowed to isolate the target compound in good yield. An in vitro antiproliferative assay showed that this xylo-C-nucleoside was active against a panel of tumor cell lines such as the human leukemia HL-60 (IC50 = 1.9 µM) and lung cancer NCI-H460 (IC50 = 2.0 µM) cells. To extend the scope of our study in the field of C-nucleoside phosphonates, the synthesis of a l-threose C-nucleoside with a phosphonomethoxy moiety at the 3'-position and pyrrolo[2,1-f][1,2,4]triazin-4-amine as nucleobase is described in Chapter 5. This C-nucleoside was obtained by coupling a benzyl protected l-threono-1,4-lactone with 4-(methylthio)pyrrolo[2,1-f][1,2,4]triazine. A tert-butyldiphenylsilyl group was selected for the regioselective protection of the 3'-hydroxyl group and then cleaved to give the key intermediate with a free hydroxyl group at the 3'-position. A phosphonate unit was successfully introduced under basic conditions to give the desired compound. Unfortunately, antiviral evaluation against RNA viruses and DNA viruses revealed that the synthesized threose C-nucleosides exhibited no significant antiviral activity or cytotoxicity. Further screening against HBV is currently undergoing. status: published
- Published
- 2019
33. Discovery of (3-Phenylcarbamoyl-3,4-dihydro-2 H -pyrrol-2-yl)phosphonates as Imidazoline I 2 Receptor Ligands with Anti-Alzheimer and Analgesic Properties.
- Author
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Bagán A, López-Ruiz A, Abás S, Ruiz-Cantero MC, Vasilopoulou F, Taboada-Jara T, Griñán-Ferré C, Pallàs M, Muguruza C, Diez-Alarcia R, Callado LF, Entrena JM, Cobos EJ, Pérez B, Morales-García JA, Molins E, De Jonghe S, Daelemans D, Brea J, Val C, Loza MI, Hernández-Hernández E, García-Sevilla JA, García-Fuster MJ, Díaz C, Fernández-Godino R, Genilloud O, Beljkaš M, Oljačić S, Nikolic K, and Escolano C
- Abstract
Imidazoline I
2 -IRs) are altered in Alzheimer's disease (AD) patients and are associated with analgesia. I2 -IRs) are altered in Alzheimer's disease (AD) patients and are associated with analgesia. I2 -IRs are not structurally described, and their pharmacological characterization relies on their modulation by highly affine ligands. Herein, we describe the synthesis of (3-phenylcarbamoyl-3,4-dihydro-2 H -pyrrol-2-yl)phosphonates endowed with relevant affinities for I2 -IRs in human brain tissues. The optimal ADME and pharmacokinetic profile of a selected compound, 12d, secured its in vivo exploration in a senescence accelerated prone 8 mice revealing improvement in the cognitive impairment and unveiling the mechanism of action by analyzing specific AD biomarkers. The treatment of a capsaicin-induced mechanical hypersensitivity murine model with 12d revealed analgesic properties devoid of motor coordination issues. The target engagement of 12d was demonstrated by suppression of the analgesic effect by pretreatment with idazoxan. Overall, 12d is a putative candidate for advancing preclinical phases and supports the modulation of I2 -IRs as an innovative approach for therapeutics.- Published
- 2025
- Full Text
- View/download PDF
34. Optimization of SARS-CoV-2 M pro Inhibitors by a Structure-Based Multilevel Virtual Screening Method.
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Jing L, Zhao F, Zheng L, Meng B, Gao S, Laporte M, Jochmans D, De Jonghe S, Neyts J, Zhan P, Kang D, and Liu X
- Subjects
- Humans, Molecular Docking Simulation, COVID-19 Drug Treatment, Coronavirus 3C Proteases antagonists & inhibitors, Coronavirus 3C Proteases chemistry, Coronavirus 3C Proteases metabolism, Structure-Activity Relationship, Drug Evaluation, Preclinical methods, COVID-19 virology, Lactams, Leucine, Nitriles, Proline, SARS-CoV-2 drug effects, Antiviral Agents pharmacology, Antiviral Agents chemistry, Molecular Dynamics Simulation
- Abstract
With the aim of developing novel anti-SARS-CoV-2 drugs to address the ongoing evolution and emergence of drug-resistant strains, the reported SARS-CoV-2 M
pro inhibitor WU-04 was selected as a lead to find novel, highly potent, and broad-spectrum inhibitors. Using a fragment-based multilevel virtual screening strategy, 15 hit compounds were identified and subsequently synthesized. Among them, A5 (IC50 = 1.05 μM), A6 (IC50 = 1.08 μM), and A9 (IC50 = 0.154 μM) demonstrated potent SARS-CoV-2 Mpro inhibition comparable to or slightly weaker than WU-04 . Antiviral activity evaluations revealed that compound A9 exhibited the strongest antiviral activity with an EC50 value of 0.18 μM, quite comparable to the marketed drug Nirmatrelvir (EC50 = 0.123 μM) and inferior to WU-04 (EC50 = 0.042 μM). Molecular dynamics simulations elucidated the key interactions between compounds A5 , A6 , A9 , and the binding pocket of SARS-CoV-2 Mpro , providing valuable insights into their mechanisms of action. These findings identify compound A9 as a promising lead for anti-SARS-CoV-2 drug development.- Published
- 2025
- Full Text
- View/download PDF
35. Synthesis of 3-heteroaryl-pyrrolo[2,3-b]pyridines as potent inhibitors of AP-2-associated protein kinase 1 (AAK1) with antiviral activity.
- Author
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Ravi NP, Van Eynde W, Karim M, Nhu Tran DH, Agrawal A, Schols D, Voet A, Einav S, Dehaen W, and De Jonghe S
- Subjects
- Humans, Structure-Activity Relationship, Molecular Structure, Dengue Virus drug effects, Dengue Virus enzymology, Dose-Response Relationship, Drug, Protein Serine-Threonine Kinases antagonists & inhibitors, Protein Serine-Threonine Kinases metabolism, Animals, Microbial Sensitivity Tests, Antiviral Agents pharmacology, Antiviral Agents chemical synthesis, Antiviral Agents chemistry, Pyridines pharmacology, Pyridines chemical synthesis, Pyridines chemistry, Protein Kinase Inhibitors pharmacology, Protein Kinase Inhibitors chemical synthesis, Protein Kinase Inhibitors chemistry, Pyrroles pharmacology, Pyrroles chemical synthesis, Pyrroles chemistry
- Abstract
Inhibition of AP-2-associated protein kinase 1 (AAK1) has been shown to be a promising avenue for the development of broad-spectrum antiviral agents. On a previously described AAK1 inhibitor based on a pyrrolo[2,3-b]pyridine scaffold, the concept of isosterism was applied, by replacing a carboxamide linker by various five-membered heterocycles. It led to the discovery of a novel series of AAK1 inhibitors with IC
50 values in the low nM range, that also displayed antiviral activity against the dengue virus and Venezuelan equine encephalitis virus., Competing Interests: Declaration of competing interest The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: Steven De Jonghe and Shirit Einav reports financial support was provided by US Department of Defense. Steven De Jonghe and Shirit Einav reports financial support was provided by Defense Threat Reduction Agency. Wim Dehaen reports equipment, drugs, or supplies was provided by Hercules Foundation of the Flemish Government. Wim Dehaen reports equipment, drugs, or supplies was provided by FWO-Vlaanderen. If there are other authors, they declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Masson SAS. All rights reserved.)- Published
- 2024
- Full Text
- View/download PDF
36. Correction to "Synthesis of a 3'-Fluoro-3'-deoxytetrose Adenine Phosphonate".
- Author
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De S, De Jonghe S, and Herdewijn P
- Published
- 2024
- Full Text
- View/download PDF
37. Protecting Group Control of Hydroxyketone-Hemiketal Tautomeric Equilibrium Enables the Stereoselective Synthesis of a 1 ' -Azido C -Nucleoside.
- Author
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Panda S, Orimoloye MO, Poudel TN, De Jonghe S, Jochmans D, Neyts J, and Aldrich CC
- Subjects
- Stereoisomerism, Ketones chemistry, Molecular Structure, Nucleosides chemistry, Nucleosides chemical synthesis, Azides chemistry
- Abstract
The synthesis of 1 ' -azido C -nucleosides is described to expand the set of azide-functionalized nucleosides for bioorthogonal applications and as potential antiviral drugs. Lewis acid-promoted azidation of a nucleoside hemiketal resulted in the formation of a tetrazole through a Schmidt reaction manifold. Conformational control to prevent ring-chain tautomerism enabled efficient 1 ' -azidation with complete β-diastereoselectivity. The unique reactivity and further derivation of the 1 ' -azido C -nucleosides are also reported.
- Published
- 2024
- Full Text
- View/download PDF
38. Synthesis and functional screening of novel inhibitors targeting the HDAC6 zinc finger ubiquitin-binding domain.
- Author
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Geurs S, Staessens E, Bredael K, Borghgraef S, De Ridder J, Persoons L, De Jonghe S, Schols D, Mann MK, Harding RJ, Franceus J, Desmet T, Van Hecke K, Clarisse D, De Bosscher K, and D'hooghe M
- Subjects
- Humans, Structure-Activity Relationship, Ubiquitin metabolism, Molecular Structure, Dose-Response Relationship, Drug, Molecular Docking Simulation, Antiviral Agents pharmacology, Antiviral Agents chemical synthesis, Antiviral Agents chemistry, Antineoplastic Agents pharmacology, Antineoplastic Agents chemical synthesis, Antineoplastic Agents chemistry, Cell Line, Tumor, Cell Proliferation drug effects, Histone Deacetylase 6 antagonists & inhibitors, Histone Deacetylase 6 metabolism, Histone Deacetylase Inhibitors pharmacology, Histone Deacetylase Inhibitors chemical synthesis, Histone Deacetylase Inhibitors chemistry, Zinc Fingers
- Abstract
Histone deacetylase 6 (HDAC6) is a promising target for treating neurodegenerative disorders, several cancer types and viral infections. Unique among HDACs, the HDAC6 isoform possesses a zinc finger ubiquitin-binding domain (UBD) crucial for managing misfolded protein aggregates and facilitating viral infection. HDAC6 binds aggregated polyubiquitinated proteins through its UBD, mediating their transport to the aggresome and subsequent removal via autophagy. Despite the importance of the UBD in proteostasis and viral infection, its pharmacological inhibition has been minimally explored thus far, with research largely focused on the deacetylase domain. We synthesized a diverse library of new compounds designed to target the HDAC6-UBD, termed HZUBi, with varied core structures including quinazolinone, oxindole and tetrahydrothiopyrano[4,3-b]indole, aimed at enhancing UBD interaction and extending into the side pocket. New structure-activity relationships were established, computational docking and molecular dynamics studies were performed and the functional impact of selected inhibitors was assessed in the context of multiple myeloma and viral infection. Several new HZUBi could displace a ubiquitin peptide from HDAC6-UBD in a differential manner, although to a lower extent than the literature reference compound HZUBi-3e. Despite exhibiting in vitro target engagement, neither HZUBi-3e nor its ester prodrug HZUBi-1e enhanced proteasome inhibitor-mediated multiple myeloma cell killing. Finally, none of the screened HZUBi triggered anti-viral activity., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2025 Elsevier Masson SAS. All rights reserved.)
- Published
- 2025
- Full Text
- View/download PDF
39. Exploring 4,7-Disubstituted Pyrimido[4,5- d ]pyrimidines as Antiviral and Anticancer Agents.
- Author
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Georgiou EA, Paraskevas K, Koutra C, Persoons L, Schols D, De Jonghe S, and Kostakis IK
- Subjects
- Humans, Cell Line, Tumor, Structure-Activity Relationship, Cell Proliferation drug effects, Molecular Structure, Antiviral Agents pharmacology, Antiviral Agents chemistry, Antiviral Agents chemical synthesis, Antineoplastic Agents pharmacology, Antineoplastic Agents chemistry, Antineoplastic Agents chemical synthesis, Pyrimidines pharmacology, Pyrimidines chemistry, Pyrimidines chemical synthesis
- Abstract
Thirteen new 4,7-disubstituted pyrimido[4,5- d ]pyrimidines were synthesized via a straightforward methodology starting from thiourea. The anti-proliferative activity of these compounds was evaluated across a diverse panel of eight cancer cell lines, with derivatives 7d and 7h showing efficacy against several hematological cancer types. Furthermore, all compounds were assessed for their antiviral potency against a panel of viruses. Compounds featuring a cyclopropylamino group and an aminoindane moiety exhibited remarkable efficacy against human coronavirus 229E (HCoV-229E). These findings highlight the pyrimidino[4,5- d ]pyrimidine scaffold as an interesting framework for the design of novel antiviral agents against HCoVs, with compounds 7a , 7b , and 7f emerging as strong candidates for further investigation.
- Published
- 2024
- Full Text
- View/download PDF
40. 3-nitropyridine analogues as novel microtubule-targeting agents.
- Author
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Herman J, Vanstreels E, Bardiot D, Prota AE, Gaillard N, Gao LJ, Vercruysse T, Persoons L, Daems T, Waer M, Herdewijn P, Louat T, Steinmetz MO, De Jonghe S, Sprangers B, and Daelemans D
- Subjects
- Animals, Humans, Mice, Cell Line, Tumor, Tubulin Modulators pharmacology, Tubulin Modulators chemistry, Crystallography, X-Ray, Xenograft Model Antitumor Assays, Cell Proliferation drug effects, Microtubules drug effects, Microtubules metabolism, Tubulin metabolism, Pyridines chemistry, Pyridines pharmacology, Antineoplastic Agents pharmacology, Antineoplastic Agents chemistry
- Abstract
Microtubule-targeting agents are an important class of anti-cancer drugs; their full potential is however not realized because of significant myelotoxicity and neurotoxicity. We here report 3-nitropyridine analogues as a novel group of microtubule-targeting agents with potent anti-cancer effects against a broad range of cancer types. We show that these 3-nitropyridines induce cell cycle arrest in the G2-M phase and inhibit tubulin polymerization by interacting with tubulin. Determination of the tubulin-4AZA2996 structure by X-ray crystallography demonstrated that this class of compounds binds to the colchicine-site of tubulin. Furthermore, the anti-cancer effect was demonstrated both in vitro and in vivo in a murine heterotopic xenograft model of colon cancer. When administered intravenously, 4AZA2891 effectively inhibited cancer growth. Whereas 3-nitropyridine compounds do not induce myelotoxicity at pharmacological doses, the neurotoxicity associated with microtubule-targeting agents is still present., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2024 Herman et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
- Published
- 2024
- Full Text
- View/download PDF
41. Steroidal 21-imidazolium salt derivatives: Synthesis and anticancer activity.
- Author
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Sucman NS, Ya Bilan D, Cojocari SV, Pogrebnoi VS, Stîngaci EP, Khripach VA, Zhabinskii VN, Tsybruk TV, Grabovec IP, Panibrat OV, Persoons L, Schols D, Froeyen M, Shova S, De Jonghe S, and Macaev FZ
- Subjects
- Humans, Male, Cell Line, Tumor, Cell Proliferation drug effects, Drug Screening Assays, Antitumor, Salts chemistry, Salts pharmacology, Salts chemical synthesis, Steroid 17-alpha-Hydroxylase antagonists & inhibitors, Steroid 17-alpha-Hydroxylase metabolism, Steroids chemistry, Steroids pharmacology, Steroids chemical synthesis, Structure-Activity Relationship, Heterocyclic Compounds chemical synthesis, Heterocyclic Compounds chemistry, Heterocyclic Compounds pharmacology, Antineoplastic Agents pharmacology, Antineoplastic Agents chemical synthesis, Antineoplastic Agents chemistry, Imidazoles chemistry, Imidazoles pharmacology, Imidazoles chemical synthesis
- Abstract
Nitrogen-containing steroids are known as prostate cancer therapeutics. In this work, a series of pregnane derivatives bearing an imidazolium moiety were synthesized using Δ
16 -20-ketones as starting material. An improved approach for the construction of the 20-keto-21-heterocycle-substituted fragment involved the rearrangement of 16,17-epoxides with HCl, followed by reaction of the formed α-chloroketone with 1-substituted imidazoles. Binding affinity analysis of the imidazolium steroids and their synthetic intermediates to human CYP17A1 showed only type I (substrate-like) interactions. The strongest affinity was observed for 16α,17α-epoxy-5α-pregnan-20-on-3β-ol (Kd = 0.66 ± 0.05 µM). The steroid derivatives have been evaluated for antitumor activity against a range of prostate cancer cells as well as against various other solid tumor and hematologic cancer cell lines. All 21-imidazolium salts were active against the hormone-dependent prostate cancer line LNCaP. The most pronounced cytotoxicity in solid tumor and hematologic cancer cell lines was observed for intermediate product, 21-chloro-5α-pregn-16-en-20-on-3β-ol. Among the imidazolium salts, the derivatives with a single bond were more cytotoxic than their unsaturated congeners., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Inc. All rights reserved.)- Published
- 2024
- Full Text
- View/download PDF
42. Synthesis and evaluation of isothiazolo[4,5- b ]pyridines as cyclin G-associated kinase (GAK) inhibitors.
- Author
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Ivanova Y, Spittaels S, Gao LJ, Schols D, Van Meervelt L, Froeyen M, Dehaen W, and De Jonghe S
- Subjects
- Humans, Structure-Activity Relationship, Protein Serine-Threonine Kinases antagonists & inhibitors, Protein Serine-Threonine Kinases metabolism, Models, Molecular, Molecular Structure, Intracellular Signaling Peptides and Proteins, Protein Kinase Inhibitors pharmacology, Protein Kinase Inhibitors chemical synthesis, Protein Kinase Inhibitors chemistry, Pyridines chemistry, Pyridines pharmacology, Pyridines chemical synthesis, Thiazoles chemistry, Thiazoles pharmacology, Thiazoles chemical synthesis
- Abstract
Isothiazolo[4,3- b ]pyridines have been extensively explored as inhibitors of cyclin G-associated kinase (GAK). In order to expand the structure-activity relationship study and to discover other chemotypes that act as GAK inhibitors, the closely related isothiazolo[4,5- b ]pyridine scaffold was explored. An easy and efficient synthetic procedure to access 3,5- and 3,6-dihalogenated isothiazolo[4,5- b ]pyridines as key building blocks was developed. Regioselective functionalization with various substituents was performed. None of the newly synthesized isothiazolo[4,5- b ]pyridines were active as GAK inhibitors. Molecular modeling was applied to rationalise their inactivity as GAK binders.
- Published
- 2024
- Full Text
- View/download PDF
43. The Biodistribution of the Spike Protein after Ad26.COV2.S Vaccination Is Unlikely to Play a Role in Vaccine-Induced Immune Thrombotic Thrombocytopenia.
- Author
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Marquez-Martinez S, Khan S, Lubbe JV, Solforosi L, Costes LMM, Choi Y, Boedhoe S, Verslegers M, Heerden MV, Roosen W, Jonghe S, Kristyanto H, Rezelj V, Hendriks J, Serroyen J, Tolboom J, Wegmann F, and Zahn RC
- Abstract
Ad26.COV2.S vaccination can lead to vaccine-induced immune thrombotic thrombocytopenia (VITT), a rare but severe adverse effect, characterized by thrombocytopenia and thrombosis. The mechanism of VITT induction is unclear and likely multifactorial, potentially including the activation of platelets and endothelial cells mediated by the vaccine-encoded spike protein (S protein). Here, we investigated the biodistribution of the S protein after Ad26.COV2.S dosing in three animal models and in human serum samples. The S protein was transiently present in draining lymph nodes of rabbits after Ad26.COV2.S dosing. The S protein was detected in the serum in all species from 1 day to 21 days after vaccination with Ad26.COV2.S, but it was not detected in platelets, the endothelium lining the blood vessels, or other organs. The S protein S1 and S2 subunits were detected at different ratios and magnitudes after Ad26.COV2.S or COVID-19 mRNA vaccine immunization. However, the S1/S2 ratio did not depend on the Ad26 platform, but on mutation of the furin cleavage site, suggesting that the S1/S2 ratio is not VITT related. Overall, our data suggest that the S-protein biodistribution and kinetics after Ad26.COV2.S dosing are likely not main contributors to the development of VITT, but other S-protein-specific parameters require further investigation.
- Published
- 2024
- Full Text
- View/download PDF
44. PIP4K2C inhibition reverses autophagic flux impairment induced by SARS-CoV-2.
- Author
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Karim M, Mishra M, Lo CW, Saul S, Cagirici HB, Tran DHN, Agrawal A, Ghita L, Ojha A, East MP, Gammeltoft KA, Sahoo MK, Johnson GL, Das S, Jochmans D, Cohen CA, Gottwein J, Dye J, Neff N, Pinsky BA, Laitinen T, Pantsar T, Poso A, Zanini F, Jonghe S, Asquith CRM, and Einav S
- Abstract
In search for broad-spectrum antivirals, we discovered a small molecule inhibitor, RMC-113, that potently suppresses the replication of multiple RNA viruses including SARS-CoV-2 in human lung organoids. We demonstrated selective dual inhibition of the lipid kinases PIP4K2C and PIKfyve by RMC-113 and target engagement by its clickable analog. Advanced lipidomics revealed alteration of SARS-CoV-2-induced phosphoinositide signature by RMC-113 and linked its antiviral effect with functional PIP4K2C and PIKfyve inhibition. We discovered PIP4K2C's roles in SARS-CoV-2 entry, RNA replication, and assembly/egress, validating it as a druggable antiviral target. Integrating proteomics, single-cell transcriptomics, and functional assays revealed that PIP4K2C binds SARS-CoV-2 nonstructural protein 6 and regulates virus-induced impairment of autophagic flux. Reversing this autophagic flux impairment is a mechanism of antiviral action of RMC-113. These findings reveal virus-induced autophagy regulation via PIP4K2C, an understudied kinase, and propose dual inhibition of PIP4K2C and PIKfyve as a candidate strategy to combat emerging viruses.
- Published
- 2024
- Full Text
- View/download PDF
45. Identification of novel human CC chemokine receptor 8 (CCR8) antagonists via the synthesis of naphthalene amide and sulfonamide isosteres.
- Author
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Verhaegen Y, Liu L, Nguyen TT, Loy TV, Schols D, Voet ARD, Dehaen W, and De Jonghe S
- Subjects
- Humans, Chemokine CCL1 metabolism, Amides, Receptors, CCR8, Sulfonamides pharmacology, Naphthalenes pharmacology, Chemokines, CC metabolism, Receptors, Chemokine chemistry, Receptors, Chemokine metabolism
- Abstract
The human CC chemokine receptor 8 (CCR8) has been extensively pursued as target for the treatment of various inflammatory disorders. More recently, the importance of CCR8 in the tumor microenvironment has been demonstrated, spurring the interest in CCR8 antagonism as therapeutic strategy in immuno-oncology. On a previously described naphthalene sulfonamide with CCR8 antagonistic properties, the concept of isosterism was applied, leading to the discovery of novel CCR8 antagonists with IC
50 values in the nM range in both the CCL1 competition binding and CCR8 calcium mobilization assay. The excellent CCR8 antagonistic activity of the most potent congeners was rationalized by homology molecular modeling., Competing Interests: Declaration of competing interest The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: Yenthel Verhaegen reports financial support was provided by Fund for Scientific Research. Libao Liu reports financial support was provided by Guangzhou Elite Project. Steven De Jonghe has patent #Novel CCR8 antagonists pending to KU Leuven. Tom Van Loy has patent #Novel CCR8 antagonists pending to KU Leuven. Dominique Schols has patent #Novel CCR8 antagonists pending to KU Leuven. Wim Dehaen has patent #Novel CCR8 antagonists pending to KU Leuven. If there are other authors, they declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Inc. All rights reserved.)- Published
- 2024
- Full Text
- View/download PDF
46. Design, synthesis, and molecular modeling studies of novel 2-quinolone-1,2,3-triazole-α-aminophosphonates hybrids as dual antiviral and antibacterial agents.
- Author
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Gadali KE, Rafya M, El Mansouri AE, Maatallah M, Vanderlee A, Mehdi A, Neyts J, Jochmans D, De Jonghe S, Benkhalti F, Sanghvi YS, Taourirte M, and Lazrek HB
- Subjects
- Humans, Anti-Bacterial Agents chemistry, Molecular Structure, Structure-Activity Relationship, Triazoles pharmacology, Staphylococcus aureus, Molecular Docking Simulation, Escherichia coli, Ampicillin pharmacology, Antiviral Agents pharmacology, Microbial Sensitivity Tests, Zika Virus Infection, Zika Virus, Hydroxyquinolines, Quinolones
- Abstract
With the aim to identify new antiviral agents with antibacterial properties, a series of 2-quinolone-1,2,3-triazole derivatives bearing α-aminophosphonates was synthesized and characterized by
1 H NMR,13 C NMR,31 P NMR, single crystal XRD and HRMS analyses. These compounds were examined against five RNA viruses (YFV, ZIKV, CHIKV, EV71 and HRV) from three distinct families (Picornaviridae, Togaviridae and Flaviviridae) and four bacterial strains (S. aureus, E. feacalis, E. coli and P. aeruginosa). The α-aminophosphonates 4f, 4i, 4j, 4k, 4p and 4q recorded low IC50 values of 6.8-10.91 μM, along with elevated selectivity indices ranging from 2 to more than 3, particularly against YFV, CHIKV and HRV-B14. Besides, the synthesized compounds were generally more sensitive toward Gram-positive bacteria, with the majority of them displaying significant potency against E. feacalis. Specifically, an excellent anti-enterococcus activity was obtained by compound 4q with MIC and MBC values of 0.03 μmol/mL, which were 8.7 and 10 times greater than those of the reference drugs ampicillin and rifampicin, respectively. Also, compounds 4f, 4p and 4q showed potent anti-staphylococcal activity with MIC values varying between 0.11 and 0.13 μmol/mL, compared to 0.27 μmol/mL for ampicillin. The results from DFT and molecular docking simulations were in agreement with the biological assays, proving the binding capability of hybrids 4f, 4i, 4j, 4k, 4p and 4q with viral and bacterial target enzymes through hydrogen bonds and other non-covalent interactions. The in silico ADME/Tox prediction revealed that these molecules possess moderate to good drug-likeness and pharmacokinetic properties, with a minimal chance of causing liver toxicity or carcinogenic effects., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Masson SAS. All rights reserved.)- Published
- 2024
- Full Text
- View/download PDF
47. Species differences in small intestinal exposure-related epithelial vacuolation in rats and dogs treated with a heteroaryldihydropyrimidine molecule.
- Author
-
Dai J, Chen T, Meng R, Jardi F, Kourula S, Pham L, De Jonghe S, De Smedt A, Frisk AL, and Xie J
- Subjects
- Rats, Dogs, Animals, Species Specificity, Intestine, Small, Pyrimidines
- Abstract
Small intestinal epithelial vacuolation induced by a heteroaryldihydropyrimidine compound (HAP-1) was observed in rats but not in dogs at termination in screening toxicity studies, despite the plasma exposure being higher in dogs. To understand the species differences, investigational studies with multiple time points following single dose (SD) and 7-day repeated dose (RD) were conducted in both species at doses resulting in comparable plasma exposures. In rats, epithelial vacuolation in the duodenum and jejunum were observed at all time points. In dogs, transient vacuolation was noted at 8 h post-SD (SD_8h) and 4 h post-RD (RD_4 h), but not at termination (RD_24 h). Special stains demonstrated lipid accumulation within enterocytes in both species and intracytoplasmic inclusion bodies in rats. Transmission electron microscopy identified these inclusion bodies as endoplasmic reticulum (ER) membranous structures. Transcriptomic analysis on jejunal mucosa at SD_8 h and RD_24 h revealed perturbations of lipid metabolism-related genes at SD_8 h in both species, but not at RD_24 h in dogs. ER stress-related gene changes at both time points were observed in rats only. Despite comparable HAP-1 plasma exposures, the duodenum and jejunum tissue concentrations of HAP-1 and acyl glucuronide metabolite were >5- and >30-fold higher in rats than in dogs, respectively. In vitro, similar cytotoxicity was observed in rat and dog duodenal organoids treated with HAP-1. In conclusion, HAP-1-induced intestinal epithelial vacuolation was related to lipid metabolism dysregulation in both species and ER-related injuries in rats only. The species differences were likely related to the difference in intestinal exposure to HAP-1 and its reactive metabolite., (© 2023 John Wiley & Sons Ltd.)
- Published
- 2024
- Full Text
- View/download PDF
48. Synthesis of a 3,7-Disubstituted Isothiazolo[4,3- b ]pyridine as a Potential Inhibitor of Cyclin G-Associated Kinase.
- Author
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Grisez T, Ravi NP, Froeyen M, Schols D, Van Meervelt L, De Jonghe S, and Dehaen W
- Subjects
- Models, Molecular, Ligands, Cyclin G, Catalysis, Pyridines pharmacology, Palladium
- Abstract
Disubstituted isothiazolo[4,3- b ]pyridines are known inhibitors of cyclin G-associated kinase. Since 3-substituted-7-aryl-isothiazolo[4,3- b ]pyridines remain elusive, a strategy was established to prepare this chemotype, starting from 2,4-dichloro-3-nitropyridine. Selective C-4 arylation using ligand-free Suzuki-Miyaura coupling and palladium-catalyzed aminocarbonylation functioned as key steps in the synthesis. The 3- N -morpholinyl-7-(3,4-dimethoxyphenyl)-isothiazolo[4,3- b ]pyridine was completely devoid of GAK affinity, in contrast to its 3,5- and 3,6-disubstituted congeners. Molecular modeling was applied to rationalize its inactivity as a GAK ligand.
- Published
- 2024
- Full Text
- View/download PDF
49. Development of a cellular model to study CCR8 signaling in tumor-infiltrating regulatory T cells.
- Author
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Liu L, Rangan L, Vanalken N, Kong Q, Schlenner S, De Jonghe S, Schols D, and Van Loy T
- Subjects
- Humans, Receptors, CCR8, T-Lymphocytes, Regulatory, Culture Media, Conditioned, Leukocytes, Mononuclear, Neoplasms
- Abstract
The human CC chemokine receptor 8 (CCR8) is specifically expressed on tumor-infiltrating regulatory T cells (TITRs) and is a promising drug target for cancer immunotherapy. However, the role of CCR8 signaling in TITR biology and the effectiveness of CCR8 small molecule antagonists as TITR-targeting immunotherapy remain subjects of ongoing debate. In this work, we generated a novel cellular model of TITRs by culturing peripheral blood mononuclear cell-derived regulatory T cells in medium containing tumor cell-conditioned medium, CD3/CD28 activator, interleukin-2 and 1α,25-dihydroxyvitamin D3. This cellular model (named TITR mimics) highly and stably expressed a series of TITR signature molecules, including CCR8, FOXP3, CD30, CD39, CD134, CD137, TIGIT and Tim-3. Moreover, TITR mimics displayed robust in vitro immunosuppressive activity. To unravel the functional role of CCR8 in TITR mimics, a chemotaxis assay was performed showing strong and CCR8-specific migration toward CCL1, the natural chemokine agonist of CCR8. However, either stimulation (with CCL1) or blocking (with the small molecule antagonist NS-15) of CCR8 signaling did not affect the immunosuppressive activity, proliferation and survival of TITR mimics. Collectively, our work provides a method for the generation of TITR mimics in vitro, which can be used to study TITR biology and to evaluate drug candidates targeting TITRs. Furthermore, our findings suggest that CCR8 signaling primarily regulates migration of these cells., (© 2024. The Author(s).)
- Published
- 2024
- Full Text
- View/download PDF
50. Synthesis and Biological Evaluation of 2-Substituted Quinazolin-4(3 H )-Ones with Antiproliferative Activities.
- Author
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Karelou M, Kampasis D, Kalampaliki AD, Persoons L, Krämer A, Schols D, Knapp S, De Jonghe S, and Kostakis IK
- Subjects
- Humans, Quinazolines pharmacology, Cell Line, Structure-Activity Relationship, Neoplasms, Antineoplastic Agents pharmacology
- Abstract
Sixteen new 2-substituted quinazolines were synthesized using a straightforward methodology starting from 2-methoxybezoic acid or 3-methoxy-2-naphthoic acid. The anti-proliferative activity of the target compounds was evaluated against nine cancer cell lines. Additionally, all the compounds were screened for their potency and selectivity against a panel of 109 kinases and four bromodomains, using Differential Scanning Fluorimetry (DSF). Compound 17 bearing a 2-methoxyphenyl substitution along with a basic side chain displayed a remarkable profile against the majority of the tested cell lines.
- Published
- 2023
- Full Text
- View/download PDF
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