80 results on '"Jondelius, U."'
Search Results
2. Copulatory organ musculature in Childia (Acoela) as revealed by phalloidin fluorescence and confocal microscopy
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Raikova, O.I., Tekle, Y.I., Reuter, M., Gustafsson, M.K.S., and Jondelius, U.
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- 2006
- Full Text
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3. Contribution of soft-bodied meiofaunal taxa to Italian marine biodiversity
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Curini-Galletti, M., primary, Artois, T., additional, Di Domenico, M., additional, Fontaneto, D., additional, Jondelius, U., additional, Jörger, K. M., additional, Leasi, F., additional, Martínez, A., additional, Norenburg, J. L., additional, Sterrer, W., additional, and Todaro, M. A., additional
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- 2020
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- View/download PDF
4. Ultrastructure of sperm and spermiogenesis ofPterastericola astropectinis (Platyhelminthes, Rhabdocoela, Pterastericolidae)
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Watson, N. A., Rohde, K., and Jondelius, U.
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- 1993
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5. Biodiversity estimates and ecological interpretations of meiofaunal communities are biased by the taxonomic approach
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Leasi, F., Sevigny, J.L., Laflamme, E.M., Artois, T., Curini-Galletti, M., de Jesús-Navarrete, A., Di Domênico, M., Goetz, F., Hall, J.A., Hochberg, R., Jörger, K.M., Jondelius, U., Todaro, M.A., Wirshing, H.H., Norenburg, J.L., and Thomas, W.K.
- Abstract
Accurate assessments of biodiversity are crucial to advising ecosystem-monitoring programs and understanding ecosystem function. Nevertheless, a standard operating procedure to assess biodiversity accurately and consistently has not been established. This is especially true for meiofauna, a diverse community (>20 phyla) of small benthic invertebrates that have fundamental ecological roles. Recent studies show that metabarcoding is a cost-effective and time-effective method to estimate meiofauna biodiversity, in contrast to morphological-based taxonomy. Here, we compare biodiversity assessments of a diverse meiofaunal community derived by applying multiple taxonomic methods based on comparative morphology, molecular phylogenetic analysis, DNA barcoding of individual specimens, and metabarcoding of environmental DNA. We show that biodiversity estimates are strongly biased across taxonomic methods and phyla. Such biases affect understanding of community structures and ecological interpretations. This study supports the urgency of improving aspects of environmental high-throughput sequencing and the value of taxonomists in correctly understanding biodiversity estimates.
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- 2018
6. Author Correction: Biodiversity estimates and ecological interpretations of meiofaunal communities are biased by the taxonomic approach (Communications Biology, (2018), 1, 1, (112), 10.1038/s42003-018-0119-2)
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Leasi, F., Sevigny, J. L., Laflamme, E. M., Artois, T., Curini-Galletti, M., de Jesus Navarrete, A., Di Domenico, M., Goetz, F., Hall, J. A., Hochberg, R., Jorger, K. M., Jondelius, U., Todaro, M. A., Wirshing, H. H., Norenburg, J. L., and Thomas, W. K.
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- 2018
7. Organisation of the nervous system in the Acoela: an immunocytochemical study
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Reuter, M., Raikova, O.I., Jondelius, U., Gustafsson, M.K.S., Maule, A.G., and Halton, D.W.
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- 2001
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8. The brain of the Nemertodermatida (Platyhelminthes) as revealed by anti-5HT and anti-FMRFamide immunostainings
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Raikova, O.I., Reuter, M., Jondelius, U., and Gustafsson, M.K.S.
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- 2000
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9. Phylogeny of Chaetonotidae and other Paucitubulatina (Gastrotricha: Chaetonotida) and the colonization of aquatic ecosystems
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Kanneby, T., Todaro, Mary Antonio Donatello, and Jondelius, U.
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Gastrotricha ,28S ,CoxI ,phylogeny ,18S ,evolution - Published
- 2013
10. Gastrotricha: A Marine Sister for a Freshwater Puzzle
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Todaro, Mary Antonio Donatello, Dal Zotto, M., Jondelius, U., Hochberg, R., Hummon, W. D., Kanneby, T., Rocha, C. E. F., and DAL ZOTTO, Matteo
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0106 biological sciences ,Evolution ,Science ,010607 zoology ,18S ,Marine and Aquatic Sciences ,Zoology ,Fresh Water ,Marine Biology ,010603 evolutionary biology ,01 natural sciences ,Chaetonotida ,Phylogenetics ,Helminths ,Animals ,Seawater ,Evolutionary Systematics ,Clade ,Gastrotricha ,Phylogeny ,Brazil ,USVI ,freshwater ,parthenogenesys ,Biology ,Taxonomy ,Evolutionary Biology ,Multidisciplinary ,Ecology ,Phylogenetic tree ,biology ,Macrodasyida ,Classification ,Probability Theory ,biology.organism_classification ,Incertae sedis ,Organismal Evolution ,Taxon ,Morphological analysis ,Earth Sciences ,Medicine ,Mathematics ,Research Article ,Ecological Environments - Abstract
BackgroundWithin an evolutionary framework of Gastrotricha Marinellina flagellata and Redudasys fornerise bear special interest, as they are the only Macrodasyida that inhabit freshwater ecosystems. Notwithstanding, these rare animals are poorly known; found only once (Austria and Brazil), they are currently systematised as incertae sedis. Here we report on the rediscovery of Redudasys fornerise, provide an account on morphological novelties and present a hypothesis on its phylogenetic relationship based on molecular data.Methodology/principal findingsSpecimens were surveyed using DIC microscopy and SEM, and used to obtain the 18 S rRNA gene sequence; molecular data was analyzed cladistically in conjunction with data from 42 additional species belonging to the near complete Macrodasyida taxonomic spectrum. Morphological analysis, while providing new information on taxonomically relevant traits (adhesive tubes, protonephridia and sensorial bristles), failed to detect elements of the male system, thus stressing the parthenogenetic nature of the Brazilian species. Phylogenetic analysis, carried out with ML, MP and Bayesian approaches, yielded topologies with strong nodal support and highly congruent with each other. Among the supported groups is the previously undocumented clade showing the alliance between Redudasys fornerise and Dactylopodola agadasys; other strongly sustained clades include the densely sampled families Thaumastodermatidae and Turbanellidae and most genera.Conclusions/significanceA reconsideration of the morphological traits of Dactylopodola agadasys in light of the new information on Redudasys fornerise makes the alliance between these two taxa very likely. As a result, we create Anandrodasys gen. nov. to contain members of the previously described D. agadasys and erect Redudasyidae fam. nov. to reflect this novel relationship between Anandrodasys and Redudasys. From an ecological perspective, the derived position of Redudasys, which is deeply nested within the Macrodasyida clade, unequivocally demonstrates that invasion of freshwater by gastrotrichs has taken place at least twice, in contrast with the single event hypothesis recently put forward.
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- 2012
11. Probing gastrotrich taxonomy with DNA barcoding
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DAL ZOTTO, M, C S, Ghiviriga, Kånneby, T, Jondelius, U, and Todaro, M
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- 2010
12. One new species and records of Ichthydium Ehrenberg, 1830 (Gastrotricha: Chaetonotida) from Sweden with a key to the genus
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Kånneby, T., M. Antonio Todaro, and Jondelius, U.
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Gastrotricha ,Chaetonotida ,Chaetonotidae ,taxonomy ,sweden ,meiofauna ,Animalia ,Biodiversity ,Taxonomy - Abstract
Kånneby, Tobias, Todaro, Antonio, Jondelius, Ulf (2009): One new species and records of Ichthydium Ehrenberg, 1830 (Gastrotricha: Chaetonotida) from Sweden with a key to the genus. Zootaxa 2278: 26-46, DOI: 10.5281/zenodo.191157
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- 2009
13. Meiofauna of the Koster-area, results from a workshop at the Sven Lovén Centre for Marine Sciences (Tjärnö, Sweden)
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Willems, W. R., Curini-Galletti, M., Ferrero, T. J., Fontaneto, D., Heiner, I., Huys, R., Viatcheslav Ivanenko, Kristensen, R. M., Kanneby, T., Macnaughton, M. O., Martinez Arbizu, P., Todaro, M. A., Sterrer, W., and Jondelius, U.
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Meiofauna ,taxonomy ,faunistica ,biodiversity ,species list ,biogeography ,faunistics - Abstract
During a two-week workshop held at the Sven Lovén Centre for Marine Sciences on Tjärnö, an island on the Swedish west-coast, meiofauna was studied in a large variety of habitats using a wide range of sampling techniques. Almost 100 samples coming from littoral beaches, rock pools and different types of sublittoral sand- and mudflats yielded a total of 430 species, a conservative estimate. The main focus was on acoels, proseriate and rhabdocoel flatworms, rotifers, nematodes, gastrotrichs, copepods and some smaller taxa, like nemertodermatids, gnathostomulids, cycliophorans, dorvilleid polychaetes, priapulids, kinorhynchs, tardigrades and some other flatworms. As this is a preliminary report, some species still have to be positively identified and/or described, as 157 species were new for the Swedish fauna and 27 are possibly new to science. Each taxon is discussed separately and accompanied by a detailed species list.
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- 2009
14. Ultrastructural and immunocytochemical investigation of acoel sperms with 9+1 axoneme structure: new sperm characters for unraveling phylogeny in Acoela
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Tekle, Y.I, Raikova, O.I, Justine, Jean-Lou, Hendelberg, J., Jondelius, U., Leballeur, Philippe, Systématique, adaptation, évolution (SAE), and Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)
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acoela ,immunocytochemistry ,[SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology ,[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology ,flagella ,cytoplasmic microtubules ,ultrastructure - Abstract
Acoel sperm characters proved useful in deciphering acoel taxonomy. The phylogenetic value of sperm characters in closely related sub-groups or in a monophyletic taxon has not yet been assessed. We have investigated sperm ultrastructure in seven members of the monophyletic taxon Childia sensu (Tekle et al. J Zool Sys Evol Res 43 (1):72-90, 2005) and in their closest relatives, the Mecynostomidae (four taxa). All members of Childia examined show little variation in their sperm ultrastructure. The common characters of Childia taxa are: 9 + 1 axoneme structure, the presence of six distal cytoplasmic microtubules in the absence of axial or cortical ones, long nucleus and extensive nucleus-flagella overlap. We have identified a new set of cytoplasmic microtubules lying in the centriolar end of the sperm cell, distal microtubules. The origin and phylogenetic significance of this character is discussed. The types and arrangement of cytoplasmic granules could be used as phylogenetic characters at a low taxonomic level. A loose membrane amorphous core type of granule was found to be a synapomorphy for the following clade within the taxon Childia: C. crassum + C. groenlandica + C. vivipara + C. brachyposthium + C. macroposthium. Sausage shaped granules are plesiomorphic among the taxa examined. The rest of the granule characters were found to be homoplasious. Sperm ultrastructural characters have again proven their concordance with molecular phylogeny. The only morphological synapomorphies known for the sister taxa Childia-Mecynostomidae, in the molecular phylogeny, are characters derived from sperm ultrastructure: distal microtubules arranged in two groups of three microtubules each and a 9 + 1 axoneme structure. The spermatozoa of Childia and Mecynostomidae show 9 + 1 axoneme configuration, seemingly similar to the 9 + '1' axoneme pattern of the Platyhelminthes-Trepaxonemata. Using electron-microscope immunocytochemistry, we have demonstrated that, unlike the central cylinder of trepaxonematans, the central cylinder of the 9 + 1 axonemal pattern in acoels is immunoreactive to tubulin and contains a single central microtubule. Therefore, the 9 + 1 patterns in acoels and trepaxonematans are homoplasious.
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- 2007
15. Ultrastructure and tubulin immunocytochemistry of the copulatory stylet-like structure in Childia species (Acoela)
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Tekle, Y.I, Raikova, O.I, Justine, Jean-Lou, Jondelius, U., Systématique, adaptation, évolution (SAE), Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS), and Leballeur, Philippe
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microtubules ,stylet ,tubulin ,polymerization ,[SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology ,[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology ,stylet needles ,ultrastructure ,Acoela - Abstract
One of the main characters used in acoel taxonomy is the male copulatory organ. Despite this, ultrastructural studies of this structure are scarce. We studied the ultrastructure of the copulatory organ in eight species of acoels belonging to the taxon Childia. Members of Childia possess a well-developed conical or cylindrical stylet-like structure composed of needles. Immunogold cytochemistry of tubulin was used to determine the composition of the needles. Stylet-like structures of Childia species at the ultrastructural level are basically similar. Stylet needles show intracellular differentiations. As shown both by ultrastructural and immunocytochemical methods, the stylet needles, in all species studied, are composed of long, parallel microtubules, either tightly packed or polymerized. We report unusual polymerization of microtubules, resulting in formation of a honeycomb-like structure in cross section. Variations of ultrastructure among Childia species include numbers and arrangement of stylet needles, shape of needles, needle compactness, microtubule polymerization, direction of stylet growth, and presence/absence of different types of granules. The stylet-like structures are homologous within Childia, but are likely to prove nonhomologous with the other needle-like structures found in acoel copulatory organs. Stylets in Platyhelminthes are not homologous with stylet-like structures in acoels.
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- 2007
16. Problematic barcoding in flatworms: A case-study on monogeneans and rhabdocoels (Platyhelminthes)
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Vanhove, M, Tessens, B, Schoelinck, C, Jondelius, U, Littlewood, T, Artois, T, Huyse, T, Vanhove, M, Tessens, B, Schoelinck, C, Jondelius, U, Littlewood, T, Artois, T, and Huyse, T
- Abstract
Some taxonomic groups are less amenable to mitochondrial DNA barcoding than others. Due to the paucity of molecular information of understudied groups and the huge molecular diversity within flatworms, primer design has been hampered. Indeed, all attempts to develop universal flatworm-specific COI markers have failed so far. We demonstrate how high molecular variability and contamination problems limit the possibilities for barcoding using standard COI-based protocols in flatworms. As a consequence, molecular identification methods often rely on other widely applicable markers. In the case of Monogenea, a very diverse group of platyhelminth parasites, and Rhabdocoela, representing one-fourth of all free-living flatworm taxa, this has led to a relatively high availability of nuclear ITS and 18S/28S rDNA sequences on GenBank. In a comparison of the effectiveness in species assignment we conclude that mitochondrial and nuclear ribosomal markers perform equally well. In case intraspecific information is needed, rDNA sequences can guide the selection of the appropriate (i.e. taxon-specific) COI primers if available.
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- 2013
17. The phylogenetic position of Acoela as revealed by the complete mitochondrial genome of Symsagittifera roscoffensis
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Mwinyi, A, Bailly, X, Bourlat, SJ, Jondelius, U, Littlewood, T, Podsiadlowski, L, Mwinyi, A, Bailly, X, Bourlat, SJ, Jondelius, U, Littlewood, T, and Podsiadlowski, L
- Abstract
Background Acoels are simply organized unsegmented worms, lacking hindgut and anus. Several publications over recent years challenge the long-held view that acoels are early offshoots of the flatworms. Instead a basal position as sister group to all other bilaterian animals was suggested, mainly based on molecular evidence. This led to the view that features of acoels might reflect those of the last common ancestor of Bilateria, and resulted in several evo-devo studies trying to interpret bilaterian evolution using acoels as a proxy model for the "Urbilateria". Results We describe the first complete mitochondrial genome sequence of a member of the Acoela, Symsagittifera roscoffensis. Gene content and circular organization of the mitochondrial genome does not significantly differ from other bilaterian animals. However, gene order shows no similarity to any other mitochondrial genome within the Metazoa. Phylogenetic analyses of concatenated alignments of amino acid sequences from protein coding genes support a position of Acoela and Nemertodermatida as the sister group to all other Bilateria. Our data provided no support for a sister group relationship between Xenoturbellida and Acoela or Acoelomorpha. The phylogenetic position of Xenoturbella bocki as sister group to or part of the deuterostomes was also unstable. Conclusions Our phylogenetic analysis supports the view that acoels and nemertodermatids are the earliest divergent extant lineage of Bilateria. As such they remain a valid source for seeking primitive characters present in the last common ancestor of Bilateria. Gene order of mitochondrial genomes seems to be very variable among Acoela and Nemertodermatida and the groundplan for the metazoan mitochondrial genome remains elusive. More data are needed to interpret mitochondrial genome evolution at the base of Bilateria.
- Published
- 2010
18. Meiofauna of the Koster-area, results from a workshop at the Sven Lovén Centre for Marine Sciences (Tjärnö, Sweden)
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Willems, W.R., Curini-Galetti, M, Ferrero, T.J., Heiner, I, Huys, R., Ivanenko, V.N, Kristensen, Reinhardt Møbjerg, Kånneby, T., MacNaughton, M.O., Martínez Arbizu, P, Todaro, M.A., Sterrer, W, Jondelius, U., Willems, W.R., Curini-Galetti, M, Ferrero, T.J., Heiner, I, Huys, R., Ivanenko, V.N, Kristensen, Reinhardt Møbjerg, Kånneby, T., MacNaughton, M.O., Martínez Arbizu, P, Todaro, M.A., Sterrer, W, and Jondelius, U.
- Published
- 2009
19. Phylogenies without roots? A plea for the use of vouchers in molecular phylogenetic studies
- Author
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Pleijel, F., Jondelius, U., Norlinder, E., Nygren, A., Oxelman, B., Schander, C., Sundberg, P., Thollesson, M., Pleijel, F., Jondelius, U., Norlinder, E., Nygren, A., Oxelman, B., Schander, C., Sundberg, P., and Thollesson, M.
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- 2008
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20. Phylogeny of Thaumastodermatidae (Gastrotricha: Macrodasyida) Inferred from Nuclear and Mitochondrial Sequence Data
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Todaro, Mary Antonio Donatello, Kånneby, T., Dal Zotto, M., Jondelius, U., and DAL ZOTTO, Matteo
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Nuclear gene ,Science ,Animal Phylogenetics ,DNA, Mitochondrial ,DNA, Ribosomal ,Evolution, Molecular ,Monophyly ,Gastrotrich ,Gastrotricha ,protostomes ,Lophotrochozoa ,Platyzoa ,meiofauna ,invertebrates ,molecular phylogeny ,nuclear genes ,mitochondrial gene ,numts ,Phylogenetics ,Helminths ,Animals ,Evolutionary Systematics ,Biology ,Phylogeny ,Genetics ,Evolutionary Biology ,Multidisciplinary ,biology ,Phylogenetic tree ,Macrodasyida ,biology.organism_classification ,Organismal Evolution ,Sister group ,Animal Taxonomy ,Molecular phylogenetics ,Medicine ,Zoology ,Research Article - Abstract
BackgroundPhylogenetic relationships within Gastrotricha are poorly known. Attempts to shed light on this subject using morphological traits have led to hypotheses lacking satisfactory statistical support; it seemed therefore that a different approach was needed.Methodology/principal findingsIn this paper we attempt to elucidate the relationships within the taxonomically vast family Thaumastodermatidae (Macrodasyida) using molecular sequence data. The study includes representatives of all the extant genera of the family and for the first time uses a multi-gene approach to infer evolutionary liaisons within Gastrotricha. The final data set comprises sequences of three genes (18S, 28S rDNA and COI mtDNA) from 41 species, including 29 thaumastodermatids, 11 non-thaumastodermatid macrodasyidans and a single chaetonotidan. Molecular data was analyzed as a combined set of 3 genes and as individual genes, using Bayesian and maximum likelihood approaches. Two different outgroups were used: Xenotrichula intermedia (Chaetonotida) and members of the putative basal Dactylopodola (Macrodasyida). Thaumastodermatidae and all other sampled macrodasyidan families were found monophyletic except for Cephalodasyidae. Within Thaumastodermatidae Diplodasyinae and Thaumastodermatinae are monophyletic and so are most genera. Oregodasys turns out to be the most basal group within Thaumastodermatinae in analyses of the concatenated data set as well as in analyses of the nuclear genes. Thaumastoderma appears as the sister taxon to the remaining species. Surprisingly, Tetranchyroderma is non-monophyletic in our analyses as one group of species clusters with Ptychostomella while another appears as the sister group of Pseudostomella.Conclusions/significanceResults in general agree with the current classification; however, a revision of the more derived thaumastodermatid taxa seems necessary. We also found that the ostensible COI sequences from several species do not conform to the general invertebrate or any other published mitochondrial genetic code; they may be mitochondrially derived nuclear genes (numts), or one or more modifications of the mitochondrial genetic code within Gastrotricha.
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- 2011
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21. DNA taxonomy of Swedish Catenulida (Platyhelminthes) and a phylogenetic framework for catenulid classification
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LARSSON, K, primary, AHMADZADEH, A, additional, and JONDELIUS, U, additional
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- 2008
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22. Phylogeny of Catenulida and support for Platyhelminthes
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LARSSON, K, primary and JONDELIUS, U, additional
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- 2008
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23. Phylogenies without roots? A plea for the use of vouchers in molecular phylogenetic studies
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Pleijel, F., primary, Jondelius, U., additional, Norlinder, E., additional, Nygren, A., additional, Oxelman, B., additional, Schander, C., additional, Sundberg, P., additional, and Thollesson, M., additional
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- 2008
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24. First report on Rhabdocoela (Rhabditophora) from deep parts of Skagerrak, with the description of four new species (Erratum)
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WILLEMS, W., primary, SANDBERG, M. I., additional, and JONDELIUS, U., additional
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- 2007
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25. Revision of the Childiidae (Acoela), a total evidence approach in reconstructing the phylogeny of acoels with reversed muscle layers
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Tekle, Y. I., primary, Raikova, O. I., additional, Ahmadzadeh, A., additional, and Jondelius, U., additional
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- 2005
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26. Ultrastructure of the Protonephridia of Syndisyrinx-Punicea (Hickman, 1956) (Rhabdocoela, Umagillidae) and Pterastericola-Pellucida Jondelius, 1989 (Rhabdocoela, Pterastericolidae)
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Rohde, K, primary, Watson, NA, additional, and Jondelius, U, additional
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- 1992
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27. Ultrastructure of sperm and spermiogenesis of Pterastericola astropectinis (Platyhelminthes, Rhabdocoela, Pterastericolidae).
- Author
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Watson, N., Rohde, K., and Jondelius, U.
- Abstract
During development of the spermatid, two free flagella are transported distally from the main spermatid mass by elongation of the shaft. They rotate back towards the shaft and lie parallel with it prior to fusion in a distal-proximal direction. This process conforms to that found in other free-living platyhelminths that have fused or adjoined axonemes in their sperm (Acoela, Kalyptorhynchia, Polycladida). It is basically different from the process of fusion in the majority of neodermatan species (major groups of parasitic platyhelminths), where the attachment of axonemes remains near the main spermatid body, a median process grows out between them, the nucleus and mitochondria migrate into this process and axonemes then fuse with it in a proximal-distal manner. Pterastericola astropectinis also differs from the Neodermata in the presence of dense bodies in the sperm. The ultrastructure of the sperm, spermiogenesis and protonephridia does not support the view of a close affinity between Pterastericolidae and Neodermata. [ABSTRACT FROM AUTHOR]
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- 1993
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28. A Phylogenomic Backbone for Acoelomorpha Inferred from Transcriptomic Data.
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Abalde S and Jondelius U
- Abstract
Xenacoelomorpha are mostly microscopic, morphologically simple worms, lacking many structures typical of other bilaterians. Xenacoelomorphs -which include three main groups: Acoela, Nemertodermatida, and Xenoturbella- have been proposed to be an early diverging Bilateria, sister to protostomes and deuterostomes, but other phylogenomic analyses have recovered this clade nested within the deuterostomes, as sister to Ambulacraria. The position of Xenacoelomorpha within the metazoan tree has understandably attracted a lot of attention, overshadowing the study of phylogenetic relationships within this group. Given that Xenoturbella includes only six species whose relationships are well understood, we decided to focus on the most speciose Acoelomorpha (Acoela + Nemertodermatida). Here, we have sequenced 29 transcriptomes, doubling the number of sequenced species, to infer a backbone tree for Acoelomorpha based on genomic data. The recovered topology is mostly congruent with previous studies. The most important difference is the recovery of Paratomella as the first off-shoot within Acoela, dramatically changing the reconstruction of the ancestral acoel. Besides, we have detected incongruence between the gene trees and the species tree, likely linked to incomplete lineage sorting, and some signal of introgression between the families Dakuidae and Mecynostomidae, which hampers inferring the correct placement of this family and, particularly, of the genus Notocelis. We have also used this dataset to infer for the first time diversification times within Acoelomorpha, which coincide with known bilaterian diversification and extinction events. Given the importance of morphological data in acoelomorph phylogenetics, we tested several partitions and models. Although morphological data failed to recover a robust phylogeny, phylogenetic placement has proven to be a suitable alternative when a reference phylogeny is available., (© The Author(s) 2024. Published by Oxford University Press on behalf of the Society of Systematic Biologists.)
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- 2024
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29. Enhancing metabarcoding efficiency and ecological insights through integrated taxonomy and DNA reference barcoding: A case study on beach meiofauna.
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Macher JN, Martínez A, Çakir S, Cholley PE, Christoforou E, Curini Galletti M, van Galen L, García-Cobo M, Jondelius U, de Jong D, Leasi F, Lemke M, Rubio Lopez I, Sánchez N, Sørensen MV, Todaro MA, Renema W, and Fontaneto D
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- Animals, Netherlands, Biodiversity, North Sea, Invertebrates genetics, Invertebrates classification, Bathing Beaches, Ecosystem, Metagenomics methods, DNA Barcoding, Taxonomic methods, Electron Transport Complex IV genetics
- Abstract
Molecular techniques like metabarcoding, while promising for exploring diversity of communities, are often impeded by the lack of reference DNA sequences available for taxonomic annotation. Our study explores the benefits of combining targeted DNA barcoding and morphological taxonomy to improve metabarcoding efficiency, using beach meiofauna as a case study. Beaches are globally important ecosystems and are inhabited by meiofauna, microscopic animals living in the interstitial space between the sand grains, which play a key role in coastal biodiversity and ecosystem dynamics. However, research on meiofauna faces challenges due to limited taxonomic expertise and sparse sampling. We generated 775 new cytochrome c oxidase I DNA barcodes from meiofauna specimens collected along the Netherlands' west coast and combined them with the NCBI GenBank database. We analysed alpha and beta diversity in 561 metabarcoding samples from 24 North Sea beaches, a region extensively studied for meiofauna, using both the enriched reference database and the NCBI database without the additional reference barcodes. Our results show a 2.5-fold increase in sequence annotation and a doubling of species-level Operational Taxonomic Units (OTUs) identification when annotating the metabarcoding data with the enhanced database. Additionally, our analyses revealed a bell-shaped curve of OTU richness across the intertidal zone, aligning more closely with morphological analysis patterns, and more defined community dissimilarity patterns between supralittoral and intertidal sites. Our research highlights the importance of expanding molecular reference databases and combining morphological taxonomy with molecular techniques for biodiversity assessments, ultimately improving our understanding of coastal ecosystems., (© 2024 The Author(s). Molecular Ecology Resources published by John Wiley & Sons Ltd.)
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- 2024
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30. The draft genome of the microscopic Nemertoderma westbladi sheds light on the evolution of Acoelomorpha genomes.
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Abalde S, Tellgren-Roth C, Heintz J, Vinnere Pettersson O, and Jondelius U
- Abstract
Background: Xenacoelomorpha is a marine clade of microscopic worms that is an important model system for understanding the evolution of key bilaterian novelties, such as the excretory system. Nevertheless, Xenacoelomorpha genomics has been restricted to a few species that either can be cultured in the lab or are centimetres long. Thus far, no genomes are available for Nemertodermatida, one of the group's main clades and whose origin has been dated more than 400 million years ago. Methods: DNA was extracted from a single specimen and sequenced with HiFi following the PacBio Ultra-Low DNA Input protocol. After genome assembly, decontamination, and annotation, the genome quality was benchmarked using two acoel genomes and one Illumina genome as reference. The gene content of three cnidarians, three acoelomorphs, four deuterostomes, and eight protostomes was clustered in orthogroups to make inferences of gene content evolution. Finally, we focused on the genes related to the ultrafiltration excretory system to compare patterns of presence/absence and gene architecture among these clades. Results: We present the first nemertodermatid genome sequenced from a single specimen of Nemertoderma westbladi . Although genome contiguity remains challenging (N50: 60 kb), it is very complete (BUSCO: 80.2%, Metazoa; 88.6%, Eukaryota) and the quality of the annotation allows fine-detail analyses of genome evolution. Acoelomorph genomes seem to be relatively conserved in terms of the percentage of repeats, number of genes, number of exons per gene and intron size. In addition, a high fraction of genes present in both protostomes and deuterostomes are absent in Acoelomorpha. Interestingly, we show that all genes related to the excretory system are present in Xenacoelomorpha except Osr , a key element in the development of these organs and whose acquisition seems to be interconnected with the origin of the specialised excretory system. Conclusion: Overall, these analyses highlight the potential of the Ultra-Low Input DNA protocol and HiFi to generate high-quality genomes from single animals, even for relatively large genomes, making it a feasible option for sequencing challenging taxa, which will be an exciting resource for comparative genomics analyses., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 Abalde, Tellgren-Roth, Heintz, Vinnere Pettersson and Jondelius.)
- Published
- 2023
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31. Diversity in the family Isodiametridae (Acoela): New species bring back old problems.
- Author
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Atherton S and Jondelius U
- Subjects
- Animals, Base Sequence, Phylogeny
- Abstract
Eight new species of Isodiametridae (Acoela) are presented and phylogenetic relationships of the family using 18S and COI sequence data reconstructed. Four species of Baltalimania, two species of Praeaphanostoma and two species of Pseudoposthia are described that all can be distinguished both morphologically and through differences in the DNA sequences as supported by mPTP analysis. The addition of eight new species increases the number of nominal species of Isodiametridae worldwide by 10% and within Sweden by 31%, but also highlights several taxonomic problems. Several species are now confirmed as isodiametrids that are otherwise incongruent with the familys diagnostic characters. Generic keys are presented for Baltalimania and Praeaphanostoma.
- Published
- 2022
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32. Biodiversity between sand grains: Meiofauna composition across southern and western Sweden assessed by metabarcoding.
- Author
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Atherton S and Jondelius U
- Abstract
The meiofauna is an important part of the marine ecosystem, but its composition and distribution patterns are relatively unexplored. Here we assessed the biodiversity and community structure of meiofauna from five locations on the Swedish western and southern coasts using a high-throughput DNA sequencing (metabarcoding) approach. The mitochondrial cytochrome oxidase 1 (COI) mini-barcode and nuclear 18S small ribosomal subunit (18S) V1-V2 region were amplified and sequenced using Illumina MiSeq technology. Our analyses revealed a higher number of species than previously found in other areas: thirteen samples comprising 6.5 dm
3 sediment revealed 708 COI and 1,639 18S metazoan OTUs. Across all sites, the majority of the metazoan biodiversity was assigned to Arthropoda, Nematoda and Platyhelminthes. Alpha and beta diversity measurements showed that community composition differed significantly amongst sites. OTUs initially assigned to Acoela, Gastrotricha and the two Platyhelminthes sub-groups Macrostomorpha and Rhabdocoela were further investigated and assigned to species using a phylogeny-based taxonomy approach. Our results demonstrate that there is great potential for discovery of new meiofauna species even in some of the most extensively studied locations., (Sarah Atherton, Ulf Jondelius.)- Published
- 2020
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33. Human access impacts biodiversity of microscopic animals in sandy beaches.
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Martínez A, Eckert EM, Artois T, Careddu G, Casu M, Curini-Galletti M, Gazale V, Gobert S, Ivanenko VN, Jondelius U, Marzano M, Pesole G, Zanello A, Todaro MA, and Fontaneto D
- Subjects
- DNA Barcoding, Taxonomic, Environmental Monitoring, Humans, Phylogeny, Population Density, Bathing Beaches, Biodiversity, Conservation of Natural Resources, Sand, Tourism, Water
- Abstract
Whereas most work to understand impacts of humans on biodiversity on coastal areas has focused on large, conspicuous organisms, we highlight effects of tourist access on the diversity of microscopic marine animals (meiofauna). We used a DNA metabarcoding approach with an iterative and phylogeny-based approach for the taxonomic assignment of meiofauna and relate diversity patterns to the numbers of tourists accessing sandy beaches on an otherwise un-impacted island National Park. Tourist frequentation, independently of differences in sediment granulometry, beach length, and other potential confounding factors, affected meiofaunal diversity in the shallow "swash" zone right at the mean water mark; the impacts declined with water depth (up to 2 m). The indicated negative effect on meiofauna may have a consequence on all the biota including the higher trophic levels. Thus, we claim that it is important to consider restricting access to beaches in touristic areas, in order to preserve biodiversity.
- Published
- 2020
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34. A taxonomic review and revisions of Microstomidae (Platyhelminthes: Macrostomorpha).
- Author
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Atherton S and Jondelius U
- Subjects
- Animals, DNA, Helminth genetics, Platyhelminths physiology, Platyhelminths ultrastructure, Reproduction, Phylogeny, Platyhelminths classification, Platyhelminths genetics
- Abstract
Microstomidae (Platyhelminthes: Macrostomorpha) diversity has been almost entirely ignored within recent years, likely due to inconsistent and often old taxonomic literature and a general rarity of sexually mature collected specimens. Herein, we reconstruct the phylogenetic relationships of the group using both previously published and new 18S and CO1 gene sequences. We present some taxonomic revisions of Microstomidae and further describe 8 new species of Microstomum based on both molecular and morphological evidence. Finally, we briefly review the morphological taxonomy of each species and provide a key to aid in future research and identification that is not dependent on reproductive morphology. Our goal is to clarify the taxonomy and facilitate future research into an otherwise very understudied group of tiny (but important) flatworms., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2019
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35. Erratum: Author Correction: Biodiversity estimates and ecological interpretations of meiofaunal communities are biased by the taxonomic approach.
- Author
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Leasi F, Sevigny JL, Laflamme EM, Artois T, Curini-Galletti M, de Jesus Navarrete A, Di Domenico M, Goetz F, Hall JA, Hochberg R, Jörger KM, Jondelius U, Todaro MA, Wirshing HH, Norenburg JL, and Thomas WK
- Abstract
[This corrects the article DOI: 10.1038/s42003-018-0119-2.].
- Published
- 2018
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36. Biodiversity estimates and ecological interpretations of meiofaunal communities are biased by the taxonomic approach.
- Author
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Leasi F, Sevigny JL, Laflamme EM, Artois T, Curini-Galletti M, de Jesus Navarrete A, Di Domenico M, Goetz F, Hall JA, Hochberg R, Jörger KM, Jondelius U, Todaro MA, Wirshing HH, Norenburg JL, and Thomas WK
- Abstract
Accurate assessments of biodiversity are crucial to advising ecosystem-monitoring programs and understanding ecosystem function. Nevertheless, a standard operating procedure to assess biodiversity accurately and consistently has not been established. This is especially true for meiofauna, a diverse community (>20 phyla) of small benthic invertebrates that have fundamental ecological roles. Recent studies show that metabarcoding is a cost-effective and time-effective method to estimate meiofauna biodiversity, in contrast to morphological-based taxonomy. Here, we compare biodiversity assessments of a diverse meiofaunal community derived by applying multiple taxonomic methods based on comparative morphology, molecular phylogenetic analysis, DNA barcoding of individual specimens, and metabarcoding of environmental DNA. We show that biodiversity estimates are strongly biased across taxonomic methods and phyla. Such biases affect understanding of community structures and ecological interpretations. This study supports the urgency of improving aspects of environmental high-throughput sequencing and the value of taxonomists in correctly understanding biodiversity estimates., Competing Interests: The authors declare no competing interests.
- Published
- 2018
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37. Convergent evolution of bilaterian nerve cords.
- Author
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Martín-Durán JM, Pang K, Børve A, Lê HS, Furu A, Cannon JT, Jondelius U, and Hejnol A
- Subjects
- Animals, Annelida anatomy & histology, Annelida embryology, Body Patterning, Invertebrates anatomy & histology, Invertebrates embryology, Neural Plate anatomy & histology, Neural Plate embryology, Phylogeny, Rotifera anatomy & histology, Rotifera embryology, Biological Evolution, Central Nervous System anatomy & histology, Central Nervous System embryology, Nerve Net anatomy & histology, Nerve Net embryology
- Abstract
It has been hypothesized that a condensed nervous system with a medial ventral nerve cord is an ancestral character of Bilateria. The presence of similar dorsoventral molecular patterns along the nerve cords of vertebrates, flies, and an annelid has been interpreted as support for this scenario. Whether these similarities are generally found across the diversity of bilaterian neuroanatomies is unclear, and thus the evolutionary history of the nervous system is still contentious. Here we study representatives of Xenacoelomorpha, Rotifera, Nemertea, Brachiopoda, and Annelida to assess the conservation of the dorsoventral nerve cord patterning. None of the studied species show a conserved dorsoventral molecular regionalization of their nerve cords, not even the annelid Owenia fusiformis, whose trunk neuroanatomy parallels that of vertebrates and flies. Our findings restrict the use of molecular patterns to explain nervous system evolution, and suggest that the similarities in dorsoventral patterning and trunk neuroanatomies evolved independently in Bilateria.
- Published
- 2018
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38. Taxonomy assignment approach determines the efficiency of identification of OTUs in marine nematodes.
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Holovachov O, Haenel Q, Bourlat SJ, and Jondelius U
- Abstract
Precision and reliability of barcode-based biodiversity assessment can be affected at several steps during acquisition and analysis of data. Identification of operational taxonomic units (OTUs) is one of the crucial steps in the process and can be accomplished using several different approaches, namely, alignment-based, probabilistic, tree-based and phylogeny-based. The number of identified sequences in the reference databases affects the precision of identification. This paper compares the identification of marine nematode OTUs using alignment-based, tree-based and phylogeny-based approaches. Because the nematode reference dataset is limited in its taxonomic scope, OTUs can only be assigned to higher taxonomic categories, families. The phylogeny-based approach using the evolutionary placement algorithm provided the largest number of positively assigned OTUs and was least affected by erroneous sequences and limitations of reference data, compared to alignment-based and tree-based approaches., Competing Interests: We declare we have no competing interests.
- Published
- 2017
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39. NGS-based biodiversity and community structure analysis of meiofaunal eukaryotes in shell sand from Hållö island, Smögen, and soft mud from Gullmarn Fjord, Sweden.
- Author
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Haenel Q, Holovachov O, Jondelius U, Sundberg P, and Bourlat SJ
- Published
- 2017
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40. Xenacoelomorpha is the sister group to Nephrozoa.
- Author
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Cannon JT, Vellutini BC, Smith J 3rd, Ronquist F, Jondelius U, and Hejnol A
- Subjects
- Animal Structures anatomy & histology, Animals, Aquatic Organisms genetics, Bayes Theorem, Genes, Likelihood Functions, Male, Models, Biological, Transcriptome, Aquatic Organisms classification, Phylogeny
- Abstract
The position of Xenacoelomorpha in the tree of life remains a major unresolved question in the study of deep animal relationships. Xenacoelomorpha, comprising Acoela, Nemertodermatida, and Xenoturbella, are bilaterally symmetrical marine worms that lack several features common to most other bilaterians, for example an anus, nephridia, and a circulatory system. Two conflicting hypotheses are under debate: Xenacoelomorpha is the sister group to all remaining Bilateria (= Nephrozoa, namely protostomes and deuterostomes) or is a clade inside Deuterostomia. Thus, determining the phylogenetic position of this clade is pivotal for understanding the early evolution of bilaterian features, or as a case of drastic secondary loss of complexity. Here we show robust phylogenomic support for Xenacoelomorpha as the sister taxon of Nephrozoa. Our phylogenetic analyses, based on 11 novel xenacoelomorph transcriptomes and using different models of evolution under maximum likelihood and Bayesian inference analyses, strongly corroborate this result. Rigorous testing of 25 experimental data sets designed to exclude data partitions and taxa potentially prone to reconstruction biases indicates that long-branch attraction, saturation, and missing data do not influence these results. The sister group relationship between Nephrozoa and Xenacoelomorpha supported by our phylogenomic analyses implies that the last common ancestor of bilaterians was probably a benthic, ciliated acoelomate worm with a single opening into an epithelial gut, and that excretory organs, coelomic cavities, and nerve cords evolved after xenacoelomorphs separated from the stem lineage of Nephrozoa.
- Published
- 2016
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41. Hyper-cryptic marine meiofauna: species complexes in Nemertodermatida.
- Author
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Meyer-Wachsmuth I, Curini Galletti M, and Jondelius U
- Subjects
- Animals, Aquatic Organisms genetics, Geography, Haplotypes, Multilocus Sequence Typing, Phylogeny, Reproducibility of Results, Aquatic Organisms classification, Biodiversity
- Abstract
Nemertodermatida are microscopically small, benthic marine worms. Specimens of two nominal species, Sterreria psammicola and Nemertinoides elongatus from 33 locations worldwide were sequenced for three molecular markers. Species delimitation and validation was done using gene trees, haplotype networks and multilocus Bayesian analysis. We found 20 supported species of which nine: Nemertinoides glandulosum n.sp., N. wolfgangi n.sp., Sterreria boucheti n.sp., S. lundini n.sp., S. martindalei n.sp., S. monolithes n.sp., S. papuensis n.sp., S. variabilis n.sp. and S. ylvae n.sp., are described including nucleotide-based diagnoses. The distribution patterns indicate transoceanic dispersal in some of the species. Sympatric species were found in many cases. The high level of cryptic diversity in this meiofauna group implies that marine diversity may be higher than previously estimated.
- Published
- 2014
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42. Problematic barcoding in flatworms: A case-study on monogeneans and rhabdocoels (Platyhelminthes).
- Author
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Vanhove MP, Tessens B, Schoelinck C, Jondelius U, Littlewood DT, Artois T, and Huyse T
- Abstract
Some taxonomic groups are less amenable to mitochondrial DNA barcoding than others. Due to the paucity of molecular information of understudied groups and the huge molecular diversity within flatworms, primer design has been hampered. Indeed, all attempts to develop universal flatworm-specific COI markers have failed so far. We demonstrate how high molecular variability and contamination problems limit the possibilities for barcoding using standard COI-based protocols in flatworms. As a consequence, molecular identification methods often rely on other widely applicable markers. In the case of Monogenea, a very diverse group of platyhelminth parasites, and Rhabdocoela, representing one-fourth of all free-living flatworm taxa, this has led to a relatively high availability of nuclear ITS and 18S/28S rDNA sequences on GenBank. In a comparison of the effectiveness in species assignment we conclude that mitochondrial and nuclear ribosomal markers perform equally well. In case intraspecific information is needed, rDNA sequences can guide the selection of the appropriate (i.e. taxon-specific) COI primers if available.
- Published
- 2013
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43. Four new species of Acoela from Chile.
- Author
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Kånneby T and Jondelius U
- Subjects
- Animal Distribution, Animal Structures anatomy & histology, Animals, Chile, Ecosystem, Eukaryota genetics, Molecular Sequence Data, Phylogeny, Eukaryota classification
- Abstract
Acoels are with few exceptions marine worms and a common component of the interstitial meiofauna. In this study we present new species to science belonging to Isodiametridae and Solenofilomorphidae. The new species, Isodiametra finkei n. sp., Postaphanostoma nilssoni n. sp., Pseudaphanostoma hyalinorhabdoida n. sp. and Solenofilomorpha pellucida n. sp. were all collected in Chile during March 2012. Nucleotide sequences for the ribosomal genes 18S rDNA and 28S rDNA as well as COI mtDNA have been determined for the new species and used in a maximum likelihood analysis to further support their classification.
- Published
- 2013
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44. A comprehensive molecular phylogeny of dalytyphloplanida (platyhelminthes: rhabdocoela) reveals multiple escapes from the marine environment and origins of symbiotic relationships.
- Author
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Van Steenkiste N, Tessens B, Willems W, Backeljau T, Jondelius U, and Artois T
- Subjects
- Animals, Evolution, Molecular, Female, Male, RNA, Ribosomal, 18S, RNA, Ribosomal, 28S, Environment, Phylogeny, Platyhelminths classification, Platyhelminths genetics, Symbiosis genetics
- Abstract
In this study we elaborate the phylogeny of Dalytyphloplanida based on complete 18S rDNA (156 sequences) and partial 28S rDNA (125 sequences), using a Maximum Likelihood and a Bayesian Inference approach, in order to investigate the origin of a limnic or limnoterrestrial and of a symbiotic lifestyle in this large group of rhabditophoran flatworms. The results of our phylogenetic analyses and ancestral state reconstructions indicate that dalytyphloplanids have their origin in the marine environment and that there was one highly successful invasion of the freshwater environment, leading to a large radiation of limnic and limnoterrestrial dalytyphloplanids. This monophyletic freshwater clade, Limnotyphloplanida, comprises the taxa Dalyelliidae, Temnocephalida, and most Typhloplanidae. Temnocephalida can be considered ectosymbiotic Dalyelliidae as they are embedded within this group. Secondary returns to brackish water and marine environments occurred relatively frequently in several dalyeliid and typhloplanid taxa. Our phylogenies also show that, apart from the Limnotyphloplanida, there have been only few independent invasions of the limnic environment, and apparently these were not followed by spectacular speciation events. The distinct phylogenetic positions of the symbiotic taxa also suggest multiple origins of commensal and parasitic life strategies within Dalytyphloplanida. The previously established higher-level dalytyphloplanid clades are confirmed in our topologies, but many of the traditional families are not monophyletic. Alternative hypothesis testing constraining the monophyly of these families in the topologies and using the approximately unbiased test, also statistically rejects their monophyly.
- Published
- 2013
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45. Gastrotricha: a marine sister for a freshwater puzzle.
- Author
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Todaro MA, Dal Zotto M, Jondelius U, Hochberg R, Hummon WD, Kånneby T, and Rocha CE
- Subjects
- Animals, Classification, Fresh Water, Marine Biology methods, Seawater, Helminths classification, Phylogeny
- Abstract
Background: Within an evolutionary framework of Gastrotricha Marinellina flagellata and Redudasys fornerise bear special interest, as they are the only Macrodasyida that inhabit freshwater ecosystems. Notwithstanding, these rare animals are poorly known; found only once (Austria and Brazil), they are currently systematised as incertae sedis. Here we report on the rediscovery of Redudasys fornerise, provide an account on morphological novelties and present a hypothesis on its phylogenetic relationship based on molecular data., Methodology/principal Findings: Specimens were surveyed using DIC microscopy and SEM, and used to obtain the 18 S rRNA gene sequence; molecular data was analyzed cladistically in conjunction with data from 42 additional species belonging to the near complete Macrodasyida taxonomic spectrum. Morphological analysis, while providing new information on taxonomically relevant traits (adhesive tubes, protonephridia and sensorial bristles), failed to detect elements of the male system, thus stressing the parthenogenetic nature of the Brazilian species. Phylogenetic analysis, carried out with ML, MP and Bayesian approaches, yielded topologies with strong nodal support and highly congruent with each other. Among the supported groups is the previously undocumented clade showing the alliance between Redudasys fornerise and Dactylopodola agadasys; other strongly sustained clades include the densely sampled families Thaumastodermatidae and Turbanellidae and most genera., Conclusions/significance: A reconsideration of the morphological traits of Dactylopodola agadasys in light of the new information on Redudasys fornerise makes the alliance between these two taxa very likely. As a result, we create Anandrodasys gen. nov. to contain members of the previously described D. agadasys and erect Redudasyidae fam. nov. to reflect this novel relationship between Anandrodasys and Redudasys. From an ecological perspective, the derived position of Redudasys, which is deeply nested within the Macrodasyida clade, unequivocally demonstrates that invasion of freshwater by gastrotrichs has taken place at least twice, in contrast with the single event hypothesis recently put forward.
- Published
- 2012
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46. Patterns of diversity in soft-bodied meiofauna: dispersal ability and body size matter.
- Author
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Curini-Galletti M, Artois T, Delogu V, De Smet WH, Fontaneto D, Jondelius U, Leasi F, Martínez A, Meyer-Wachsmuth I, Nilsson KS, Tongiorgi P, Worsaae K, and Todaro MA
- Subjects
- Animals, Body Size, Invertebrates anatomy & histology
- Abstract
Background: Biogeographical and macroecological principles are derived from patterns of distribution in large organisms, whereas microscopic ones have often been considered uninteresting, because of their supposed wide distribution. Here, after reporting the results of an intensive faunistic survey of marine microscopic animals (meiofauna) in Northern Sardinia, we test for the effect of body size, dispersal ability, and habitat features on the patterns of distribution of several groups., Methodology/principal Findings: As a dataset we use the results of a workshop held at La Maddalena (Sardinia, Italy) in September 2010, aimed at studying selected taxa of soft-bodied meiofauna (Acoela, Annelida, Gastrotricha, Nemertodermatida, Platyhelminthes and Rotifera), in conjunction with data on the same taxa obtained during a previous workshop hosted at Tjärnö (Western Sweden) in September 2007. Using linear mixed effects models and model averaging while accounting for sampling bias and potential pseudoreplication, we found evidence that: (1) meiofaunal groups with more restricted distribution are the ones with low dispersal potential; (2) meiofaunal groups with higher probability of finding new species for science are the ones with low dispersal potential; (3) the proportion of the global species pool of each meiofaunal group present in each area at the regional scale is negatively related to body size, and positively related to their occurrence in the endobenthic habitat., Conclusion/significance: Our macroecological analysis of meiofauna, in the framework of the ubiquity hypothesis for microscopic organisms, indicates that not only body size but mostly dispersal ability and also occurrence in the endobenthic habitat are important correlates of diversity for these understudied animals, with different importance at different spatial scales. Furthermore, since the Western Mediterranean is one of the best-studied areas in the world, the large number of undescribed species (37%) highlights that the census of marine meiofauna is still very far from being complete.
- Published
- 2012
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47. How the worm got its pharynx: phylogeny, classification and Bayesian assessment of character evolution in Acoela.
- Author
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Jondelius U, Wallberg A, Hooge M, and Raikova OI
- Subjects
- Animals, Bayes Theorem, Classification, Electron Transport Complex IV genetics, Pharynx anatomy & histology, RNA, Ribosomal, 18S genetics, RNA, Ribosomal, 28S genetics, Turbellaria genetics, Biological Evolution, Phylogeny, Turbellaria anatomy & histology, Turbellaria classification
- Abstract
Acoela are marine microscopic worms currently thought to be the sister taxon of all other bilaterians. Acoels have long been used as models in evolutionary scenarios, and generalized conclusions about acoel and bilaterian ancestral features are frequently drawn from studies of single acoel species. There is no extensive phylogenetic study of Acoela and the taxonomy of the 380 species is chaotic. Here we use two nuclear ribosomal genes and one mitochondrial gene in combination with 37 morphological characters in an analysis of 126 acoel terminals (about one-third of the described species) to estimate the phylogeny and character evolution of Acoela. We present an estimate of posterior probabilities for ancestral character states at 31 control nodes in the phylogeny. The overall reconstruction signal based on the shape of the posterior distribution of character states was computed for all morphological characters and control nodes to assess how well these were reconstructed. The body-wall musculature appears more clearly reconstructed than the reproductive organs. Posterior similarity to the root was calculated by averaging the divergence between the posterior distributions at the nodes and the root over all morphological characters. Diopisthoporidae is the sister group to all other acoels and has the highest posterior similarity to the root. Convolutidae, including several "model" acoels, is most divergent. Finally, we present a phylogenetic classification of Acoela down to the family level where six previous family level taxa are synonymized.
- Published
- 2011
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48. The phylogenetic position of Acoela as revealed by the complete mitochondrial genome of Symsagittifera roscoffensis.
- Author
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Mwinyi A, Bailly X, Bourlat SJ, Jondelius U, Littlewood DT, and Podsiadlowski L
- Subjects
- Animals, Gene Order genetics, Molecular Sequence Data, Genome, Mitochondrial genetics, Phylogeny, Platyhelminths classification, Platyhelminths genetics
- Abstract
Background: Acoels are simply organized unsegmented worms, lacking hindgut and anus. Several publications over recent years challenge the long-held view that acoels are early offshoots of the flatworms. Instead a basal position as sister group to all other bilaterian animals was suggested, mainly based on molecular evidence. This led to the view that features of acoels might reflect those of the last common ancestor of Bilateria, and resulted in several evo-devo studies trying to interpret bilaterian evolution using acoels as a proxy model for the "Urbilateria"., Results: We describe the first complete mitochondrial genome sequence of a member of the Acoela, Symsagittifera roscoffensis. Gene content and circular organization of the mitochondrial genome does not significantly differ from other bilaterian animals. However, gene order shows no similarity to any other mitochondrial genome within the Metazoa. Phylogenetic analyses of concatenated alignments of amino acid sequences from protein coding genes support a position of Acoela and Nemertodermatida as the sister group to all other Bilateria. Our data provided no support for a sister group relationship between Xenoturbellida and Acoela or Acoelomorpha. The phylogenetic position of Xenoturbella bocki as sister group to or part of the deuterostomes was also unstable., Conclusions: Our phylogenetic analysis supports the view that acoels and nemertodermatids are the earliest divergent extant lineage of Bilateria. As such they remain a valid source for seeking primitive characters present in the last common ancestor of Bilateria. Gene order of mitochondrial genomes seems to be very variable among Acoela and Nemertodermatida and the groundplan for the metazoan mitochondrial genome remains elusive. More data are needed to interpret mitochondrial genome evolution at the base of Bilateria.
- Published
- 2010
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49. Assessing the root of bilaterian animals with scalable phylogenomic methods.
- Author
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Hejnol A, Obst M, Stamatakis A, Ott M, Rouse GW, Edgecombe GD, Martinez P, Baguñà J, Bailly X, Jondelius U, Wiens M, Müller WE, Seaver E, Wheeler WC, Martindale MQ, Giribet G, and Dunn CW
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Computational Biology, Likelihood Functions, Models, Genetic, Molecular Sequence Data, Sequence Analysis, DNA, Sequence Homology, Biological Evolution, Phylogeny, Turbellaria classification, Turbellaria genetics
- Abstract
A clear picture of animal relationships is a prerequisite to understand how the morphological and ecological diversity of animals evolved over time. Among others, the placement of the acoelomorph flatworms, Acoela and Nemertodermatida, has fundamental implications for the origin and evolution of various animal organ systems. Their position, however, has been inconsistent in phylogenetic studies using one or several genes. Furthermore, Acoela has been among the least stable taxa in recent animal phylogenomic analyses, which simultaneously examine many genes from many species, while Nemertodermatida has not been sampled in any phylogenomic study. New sequence data are presented here from organisms targeted for their instability or lack of representation in prior analyses, and are analysed in combination with other publicly available data. We also designed new automated explicit methods for identifying and selecting common genes across different species, and developed highly optimized supercomputing tools to reconstruct relationships from gene sequences. The results of the work corroborate several recently established findings about animal relationships and provide new support for the placement of other groups. These new data and methods strongly uphold previous suggestions that Acoelomorpha is sister clade to all other bilaterian animals, find diminishing evidence for the placement of the enigmatic Xenoturbella within Deuterostomia, and place Cycliophora with Entoprocta and Ectoprocta. The work highlights the implications that these arrangements have for metazoan evolution and permits a clearer picture of ancestral morphologies and life histories in the deep past.
- Published
- 2009
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50. Ultrastructure and tubulin immunocytochemistry of the copulatory stylet-like structure in Childia species (Acoela).
- Author
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Tekle YI, Raikova OI, Justine JL, and Jondelius U
- Subjects
- Animals, Immunohistochemistry methods, Male, Microscopy, Electron, Transmission, Seminal Vesicles anatomy & histology, Biological Evolution, Copulation, Platyhelminths anatomy & histology, Seminal Vesicles ultrastructure, Tubulin metabolism
- Abstract
One of the main characters used in acoel taxonomy is the male copulatory organ. Despite this, ultrastructural studies of this structure are scarce. We studied the ultrastructure of the copulatory organ in eight species of acoels belonging to the taxon Childia. Members of Childia possess a well-developed conical or cylindrical stylet-like structure composed of needles. Immunogold cytochemistry of tubulin was used to determine the composition of the needles. Stylet-like structures of Childia species at the ultrastructural level are basically similar. Stylet needles show intracellular differentiations. As shown both by ultrastructural and immunocytochemical methods, the stylet needles, in all species studied, are composed of long, parallel microtubules, either tightly packed or polymerized. We report unusual polymerization of microtubules, resulting in formation of a honeycomb-like structure in cross section. Variations of ultrastructure among Childia species include numbers and arrangement of stylet needles, shape of needles, needle compactness, microtubule polymerization, direction of stylet growth, and presence/absence of different types of granules. The stylet-like structures are homologous within Childia, but are likely to prove nonhomologous with the other needle-like structures found in acoel copulatory organs. Stylets in Platyhelminthes are not homologous with stylet-like structures in acoels.
- Published
- 2007
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