11 results on '"Jonathan Goldenberg"'
Search Results
2. Rapid Radiations and the Race to Redundancy: An Investigation of the Evolution of Australian Elapid Snake Venoms
- Author
-
Timothy N. W. Jackson, Ivan Koludarov, Syed A. Ali, James Dobson, Christina N. Zdenek, Daniel Dashevsky, Bianca op den Brouw, Paul P. Masci, Amanda Nouwens, Peter Josh, Jonathan Goldenberg, Vittoria Cipriani, Chris Hay, Iwan Hendrikx, Nathan Dunstan, Luke Allen, and Bryan G. Fry
- Subjects
venom ,elapid ,coagulation ,proteomics ,evolution ,redundancy ,Medicine - Abstract
Australia is the stronghold of the front-fanged venomous snake family Elapidae. The Australasian elapid snake radiation, which includes approximately 100 terrestrial species in Australia, as well as Melanesian species and all the world's true sea snakes, may be less than 12 million years old.. The incredible phenotypic and ecological diversity of the clade is matched by considerable diversity in venom composition. The clade’s evolutionary youth and dynamic evolution should make it of particular interest to toxinologists, however, the majority of species, which are small, typically inoffensive, and seldom encountered by non-herpetologists, have been almost completely neglected by researchers. The present study investigates the venom composition of 28 species proteomically, revealing several interesting trends in venom composition, and reports, for the first time in elapid snakes, the existence of an ontogenetic shift in the venom composition and activity of brown snakes (Pseudonaja sp.). Trends in venom composition are compared to the snakes’ feeding ecology and the paper concludes with an extended discussion of the selection pressures shaping the evolution of snake venom.
- Published
- 2016
- Full Text
- View/download PDF
3. Body size and substrate use affect ventral, but not dorsal, brightness evolution in lizards
- Author
-
Jonathan Goldenberg, Federico Massetti, Liliana D’Alba, and Matthew D Shawkey
- Subjects
Genetics ,General Agricultural and Biological Sciences ,Ecology, Evolution, Behavior and Systematics - Abstract
Substrate properties can affect the thermal balance of organisms, and the colored integument, alongside other factors, may influence heat transfer via differential absorption and reflection. Dark coloration may lead to higher heat absorption and could be advantageous when substrates are cool (and vice versa for bright coloration), but these effects are rarely investigated. Here, we examined the effect of substrate reflectance, specific heat capacity (cp), and body size on the dorso-ventral brightness using 276 samples from 12 species of cordylid lizards distributed across 26 sites in South Africa. We predicted, and found, that bright ventral colors occur more frequently in low cp (i.e., drier, with little energy needed for temperature change) substrates, especially in larger body-sized individuals, possibly to better modulate heat transfer with the surrounding environment. By contrast, dorsal brightness was not associated with body size nor any substrate thermal property, suggesting selection pressures other than thermoregulation. Ancestral estimation and evolutionary rate analyses suggest that ventral brightness rapidly differentiated within the Cordylinae starting 25 Mya, coinciding with an aridification period, further hinting at a thermoregulatory role for ventral colors. Our study indicates that substrate properties can have a direct role in shaping the evolution of ventral brightness in ectotherms.
- Published
- 2023
- Full Text
- View/download PDF
4. How melanism affects the sensitivity of lizards to climate change
- Author
-
Sebastian Mader, Jonathan Goldenberg, Federico Massetti, Karen Bisschop, Liliana D’Alba, Rampal S. Etienne, Susana Clusella‐Trullas, Matthew D. Shawkey, and Etienne group
- Subjects
THERMAL MELANISM ,Science & Technology ,Ecology ,Evolution ,mechanistic model ,THERMOREGULATION ,Biology and Life Sciences ,Environmental Sciences & Ecology ,CORDYLID LIZARDS ,PHYSIOLOGICAL-MECHANISMS ,integument absorptivity ,BODY-TEMPERATURE ,global warming ,EXTINCTION RISK ,GOVERNMENT FAILURE ,activity time ,Behavior and Systematics ,niche model ,HEAT-BALANCE ,Karoo Girdled lizard ,COLORATION ,Life Sciences & Biomedicine ,Ecology, Evolution, Behavior and Systematics - Abstract
The impact of climate change on global biodiversity is firmly established, but the differential effect of climate change on populations within the same species is rarely considered. In ectotherms, melanism (i.e. darker integument due to heavier deposition of melanin) can significantly influence thermoregulation, as dark individuals generally heat more and faster than bright ones. Therefore, darker ectotherms might be more susceptible to climate change. Using the colour-polyphenic lizard Karusasaurus polyzonus (Squamata: Cordylidae), we hypothesized that, under future climatic projections, darker populations will decrease their activity time more than brighter ones due to their greater potential for overheating. To test this, we mechanistically modelled the body temperatures of 56 individuals from five differently coloured populations under present and future climate conditions. We first measured morphological traits and integumentary reflectance from live animals, and then collected physiological data from the literature. We used a biophysical model to compute activity time of individual lizards as proxy for their viability, and thereby predict how different populations will cope with future climate conditions. Contrary to our expectations, we found that all populations will increase activity time and, specifically, that darker populations will become relatively more active than bright ones. This suggests that darker populations of K. polyzonus may benefit from global warming. Our study emphasizes the importance of accounting for variation between populations when studying responses to climate change, as we must consider these variations to develop efficient and specific conservation strategies. A free Plain Language Summary can be found within the Supporting Information of this article.
- Published
- 2022
- Full Text
- View/download PDF
5. Evolution of eggshell structure in relation to nesting ecology in <scp>non‐avian</scp> reptiles
- Author
-
Liliana D'Alba, Bram Vanthournout, Asritha Nallapaneni, Jonathan Goldenberg, Dilworth Y. Parkinson, Matthew D. Shawkey, and Chenhui Zhu
- Subjects
0106 biological sciences ,0301 basic medicine ,Alligators and Crocodiles ,Ecology ,Ecology (disciplines) ,Morphology (biology) ,X-Ray Microtomography ,Biology ,010603 evolutionary biology ,01 natural sciences ,Mineralization (biology) ,Turtles ,Egg Shell ,03 medical and health sciences ,030104 developmental biology ,Animals ,Nesting (computing) ,Animal Science and Zoology ,Adaptation ,Eggshell ,Desiccation ,Developmental biology ,Developmental Biology - Abstract
Amniotic eggs are multifunctional structures that enabled early tetrapods to colonize the land millions of years ago, and are now the reproductive mode of over 70% of all terrestrial amniotes. Eggshell morphology is at the core of animal survival, mediating the interactions between embryos and their environment, and has evolved into a massive diversity of forms and functions in modern reptiles. These functions are critical to embryonic survival and may serve as models for new antimicrobial and/or breathable membranes. However, we still lack critical data on the basic structural and functional properties of eggs, particularly of reptiles. Here, we first characterized egg shape, shell thickness, porosity, and mineralization of eggs from 91 reptile species using optical images, scanning electron microscopy, and micro computed tomography, and collected data on nesting ecology from the literature. We then used comparative analyses to test hypotheses on the selective pressures driving their evolution. We hypothesized that eggshell morphology has evolved to protect shells from physical damage and desiccation, and, in support, found a positive relationship between thickness and precipitation, and a negative relationship between porosity and temperature. Although mineralization varied extensively, it was not correlated with nesting ecology variables. Ancestral state reconstructions show thinning and increased porosity over evolutionary time in squamates, but the opposite in turtles and crocodilians. Egg shape, size, porosity and calcification were correlated, suggesting potential structural or developmental tradeoffs. This study provides new data and insights into the morphology and evolution of reptile eggs, and raises numerous questions for additional research.
- Published
- 2021
- Full Text
- View/download PDF
6. Untangling the structural and molecular mechanisms underlying colour and rapid colour change in a lizard, Agama atra
- Author
-
Matthew D. Shawkey, Susana Clusella-Trullas, Jonathan Goldenberg, Yannick Gansemans, Filip Van Nieuwerburgh, Liliana D'Alba, and Michaël P. J. Nicolaï
- Subjects
0106 biological sciences ,0301 basic medicine ,Future studies ,genetic structures ,Color ,010603 evolutionary biology ,01 natural sciences ,Melanin ,03 medical and health sciences ,biology.animal ,Agama atra ,Genetics ,Animals ,skin and connective tissue diseases ,Ecology, Evolution, Behavior and Systematics ,Melanins ,Change colour ,biology ,Pigmentation ,Lizard ,Lizards ,biology.organism_classification ,Chromatophore ,030104 developmental biology ,Evolutionary biology ,Biological dispersal ,%22">Fish ,sense organs - Abstract
With functions as diverse as communication, protection and thermoregulation, coloration is one of the most important traits in lizards. The ability to change colour as a function of varying social and environmental conditions is thus an important innovation. While colour change is present in animals ranging from squids, to fish and reptiles, not much is known about the mechanisms behind it. Traditionally, colour change was attributed to migration of pigments, in particular melanin. More recent work has shown that the changes in nanostructural configuration inside iridophores are able to produce a wide palette of colours. However, the genetic mechanisms underlying colour, and colour change in particular, remain unstudied. Here we use a combination of transcriptomic and microscopic data to show that melanin, iridophores and pteridines are the main colour-producing mechanisms in Agama atra, and provide molecular and structural data suggesting that rapid colour change is achieved via melanin dispersal in combination with iridophore organization. This work demonstrates the power of combining genotypic (gene expression) and phenotypic (microscopy) information for addressing physiological questions, providing a basis for future studies of colour change.
- Published
- 2021
- Full Text
- View/download PDF
7. The link between body size, colouration and thermoregulation and their integration into ecogeographical rules: a critical appraisal in light of climate change
- Author
-
Jonathan Goldenberg, Karen Bisschop, Liliana D'Alba, and Matthew Shawkey
- Subjects
GLOGERS RULE ,THERMAL MELANISM ,Science & Technology ,Ecology ,ALLENS RULE ,Evolution ,integument brightness ,MOLECULAR-MECHANISMS ,Biology and Life Sciences ,ecotype ,Environmental Sciences & Ecology ,NORTH-AMERICA ,ISLAND RULE ,thermal balance ,Behavior and Systematics ,BERGMANNS RULE ,DERMAL CHROMATOPHORES ,body plan ,GENERALLY LEAD ,Life Sciences & Biomedicine ,DEEP-SEA ,biogeography ,Ecology, Evolution, Behavior and Systematics - Abstract
Biological rules describe general morphological, structural and genetic patterns within and across species. Within these, ecogeographical rules correlate phenotypic variation of organisms with biogeography. The latter have been developed over the last 150 years, and recently have gained renewed attention due to climate change, as researchers try to predict how species will respond to different environmental conditions based on certain phenotypic features. However, there is no agreement whether such rules hold true in our rapidly changing world. Among the ecogeographical rules, six have focused on the contributions of the coloured integument and body size to the thermal balance of individuals. They are therefore particularly relevant for predicting how species' phenotypes will respond to future climatic scenarios. Here, we provide an overview and discuss these ecogeographical rules, particularly in light of thermoregulation, and probe the extent to which these rules apply, and the taxonomic levels at which they are relevant. The predictions of these rules often contradict each other, and indeed we argue that use of the word 'rule' itself hinders their careful investigation. Moreover, disrupted climate patterns and global warming alter the environmental conditions under which these rules were once formulated. Thus, these rules may be outdated in our current rapidly changing environment. We conclude by proposing a revised concept of ecogeographical rules, where the micro-environment should have a stronger influence on the phenotype of organisms than its geographical location, and we suggest precautions researchers should take when testing them.
- Published
- 2022
- Full Text
- View/download PDF
8. Proteomic and functional variation within black snake venoms (Elapidae: Pseudechis)
- Author
-
Hang Fai Kwok, Jordan Debono, Bryan G. Fry, Bin Li, Ivan Koludarov, John J. Miles, Lilin Ge, Jonathan Goldenberg, Chris Hay, Timothy N.W. Jackson, Vittoria Cipriani, Daniel Dashevsky, Alun Jones, Renan Castro Santana, Nadya Panagides, Amanda Nouwens, Nathan Dunstan, Brian O. Bush, Luke Allen, Maria P. Ikonomopoulou, and Kevin Arbuckle
- Subjects
0301 basic medicine ,Amphibian ,Models, Molecular ,Proteomics ,Pseudechis ,Physiology ,Health, Toxicology and Mutagenesis ,Molecular Conformation ,Zoology ,Venom ,Reptilian Proteins ,Toxicology ,complex mixtures ,Biochemistry ,Evolution, Molecular ,Two-Dimensional Difference Gel Electrophoresis ,03 medical and health sciences ,Species Specificity ,Genus ,biology.animal ,Animals ,Databases, Protein ,Phylogeny ,Elapid Venoms ,New Guinea ,030102 biochemistry & molecular biology ,biology ,Coagulants ,Australia ,Cell Biology ,General Medicine ,biology.organism_classification ,Hydrophiidae ,Phospholipases A2 ,030104 developmental biology ,Snake venom ,Elapidae ,Electrophoresis, Polyacrylamide Gel - Abstract
Pseudechis (black snakes) is an Australasian elapid snake genus that inhabits much of mainland Australia, with two representatives confined to Papua New Guinea. The present study is the first to analyse the venom of all 9 described Pseudechis species (plus one undescribed species) to investigate the evolution of venom composition and functional activity. Proteomic results demonstrated that the typical Pseudechis venom profile is dominated by phospholipase A2 toxins. Strong cytotoxicity was the dominant function for most species. P. porphyriacus, the most basal member of the genus, also exhibited the most divergent venom composition, being the only species with appreciable amounts of procoagulant toxins. The relatively high presence of factor Xa recovered in P. porphyriacus venom may be related to a predominantly amphibian diet. Results of this study provide important insights to guide future ecological and toxinological investigations.
- Published
- 2017
9. Beyond colour: consistent variation in near infrared and solar reflectivity in sunbirds (Nectariniidae)
- Author
-
Susana Clusella-Trullas, Matthew D. Shawkey, Jonathan Goldenberg, Svana Rogalla, Liliana D'Alba, and Branislav Igic
- Subjects
0106 biological sciences ,Male ,Infrared ,Color ,Biology ,010603 evolutionary biology ,01 natural sciences ,010309 optics ,Optics ,0103 physical sciences ,Animals ,Passeriformes ,Ecology, Evolution, Behavior and Systematics ,Melanins ,Sunbird ,business.industry ,Pigmentation ,Near-infrared spectroscopy ,General Medicine ,Feathers ,biology.organism_classification ,Carotenoids ,Iridescence ,Wavelength ,Plumage ,Feather ,visual_art ,visual_art.visual_art_medium ,Female ,business ,Visible spectrum - Abstract
The visible spectrum represents a fraction of the sun’s radiation, a large portion of which is within the near infrared (NIR). However, wavelengths outside of the visible spectrum that are reflected by coloured tissues have rarely been considered, despite their potential significance to thermal effects. Here, we report the reflectivity from 300 to 2100 nm of differently coloured feathers. We measured reflectivity across the UV-Vis-NIR spectra of different (a) body parts, (b) colour-producing mechanisms and (c) sexes for 252 individuals of 68 sunbird (family: Nectariniidae) species. Breast plumage was the most reflective and cap plumage the least. Female plumage had greater reflectivity than males. Carotenoid-based colours had the greatest reflectivity, followed by non-iridescent and iridescent melanin-based colours. As ordered arrays of melanin-filled organelles (melanosomes) produce iridescent colours, this suggests that nanostructuring may affect reflectance across the spectrum. Our results indicate that differently coloured feathers consistently vary in their thermal, as well as obvious visual, properties.
- Published
- 2017
10. Correlation between ontogenetic dietary shifts and venom variation in Australian brown snakes (Pseudonaja)
- Author
-
Luke Allen, Hang Fai Kwok, Jordan Debono, Nathan Dunstan, Vittoria Cipriani, Iwan Hendrikx, Bryan G. Fry, Kevin Arbuckle, Timothy N.W. Jackson, Jonathan Goldenberg, Bin Li, Ivan Koludarov, James Dobson, and Chris Hay
- Subjects
0301 basic medicine ,Toxinology ,Physiology ,Health, Toxicology and Mutagenesis ,Zoology ,Venom ,Toxicology ,complex mixtures ,Biochemistry ,Predation ,03 medical and health sciences ,Species Specificity ,Animals ,Humans ,Elapidae ,Least-Squares Analysis ,Envenomation ,Pseudonaja ,Phylogeny ,Elapid Venoms ,biology ,Ecology ,Coagulants ,Australia ,Cell Biology ,General Medicine ,Factor VII ,biology.organism_classification ,Brown snake ,030104 developmental biology ,Predatory Behavior ,Factor Xa ,Animal Nutritional Physiological Phenomena ,Prothrombin - Abstract
Venom is a key evolutionary trait, as evidenced by its widespread convergent evolution across the animal kingdom. In an escalating prey-predator arms race, venoms evolve rapidly to guarantee predatory or defensive success. Variation in venom composition is ubiquitous among snakes. Here, we tested variation in venom activity on substrates relevant to blood coagulation among Pseudonaja (brown snake) species, Australian elapids responsible for the majority of medically important human envenomations in Australia. A functional approach was employed to elucidate interspecific variation in venom activity in all nine currently recognised species of Pseudonaja. Fluorometric enzymatic activity assays were performed to test variation in whole venom procoagulant activity among species. Analyses confirmed the previously documented ontogenetic shift from non-coagulopathic venom in juveniles to coagulopathic venom as adults, except for the case of P. modesta, which retains non-coagulopathic venom as an adult. These shifts in venom activity correlate with documented ontogenetic shifts in diet among brown snakes from specialisation on reptilian prey as juveniles (and throughout the life cycle of P. modesta), to a more generalised diet in adults that includes mammals. The results of this study bring to light findings relevant to both clinical and evolutionary toxinology.
- Published
- 2017
11. Rapid Radiations and the Race to Redundancy: An Investigation of the Evolution of Australian Elapid Snake Venoms
- Author
-
Amanda Nouwens, James Dobson, Peter Josh, Vittoria Cipriani, Ivan Koludarov, Bryan G. Fry, Syed Abid Ali, Paul P. Masci, Iwan Hendrikx, Christina N. Zdenek, Chris Hay, Daniel Dashevsky, Bianca op den Brouw, Nathan Dunstan, Luke Allen, Timothy N.W. Jackson, and Jonathan Goldenberg
- Subjects
Male ,0301 basic medicine ,Health, Toxicology and Mutagenesis ,venom ,lcsh:Medicine ,Zoology ,Venom ,Toxicology ,Article ,Evolution, Molecular ,03 medical and health sciences ,Race (biology) ,proteomics ,evolution ,Animals ,Humans ,Elapidae ,coagulation ,Clade ,Blood Coagulation ,Pseudonaja ,Elapid Venoms ,Evolution of snake venom ,030102 biochemistry & molecular biology ,biology ,redundancy ,lcsh:R ,Australia ,elapid ,biology.organism_classification ,people.cause_of_death ,030104 developmental biology ,Venomous snake ,Predatory Behavior ,Female ,people - Abstract
Australia is the stronghold of the front-fanged venomous snake family Elapidae. The Australasian elapid snake radiation, which includes approximately 100 terrestrial species in Australia, as well as Melanesian species and all the world's true sea snakes, may be less than 12 million years old.. The incredible phenotypic and ecological diversity of the clade is matched by considerable diversity in venom composition. The clade’s evolutionary youth and dynamic evolution should make it of particular interest to toxinologists, however, the majority of species, which are small, typically inoffensive, and seldom encountered by non-herpetologists, have been almost completely neglected by researchers. The present study investigates the venom composition of 28 species proteomically, revealing several interesting trends in venom composition, and reports, for the first time in elapid snakes, the existence of an ontogenetic shift in the venom composition and activity of brown snakes (Pseudonaja sp.). Trends in venom composition are compared to the snakes’ feeding ecology and the paper concludes with an extended discussion of the selection pressures shaping the evolution of snake venom.
- Published
- 2016
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.