15 results on '"John W. Schroeder"'
Search Results
2. Mutualist and pathogen traits interact to affect plant community structure in a spatially explicit model
- Author
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John W. Schroeder, Andrew Dobson, Scott A. Mangan, Daniel F. Petticord, and Edward Allen Herre
- Subjects
Science - Abstract
Microbial plant-soil feedbacks (PSF) are fundamentally important for plant diversity. The authors present a spatially explicit dynamic model that separates the effects of microbial mutualists and pathogens, thereby presenting a testable mechanistic framework to reconcile previously puzzling observations of the strength and direction of PSF with diversity maintenance.
- Published
- 2020
- Full Text
- View/download PDF
3. The Herbaceous Understory Plant Community in the Context of the Overstory: An Overlooked Component of Tropical Diversity
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Ramón Perea, John W. Schroeder, and Rodolfo Dirzo
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herbaceous layer ,Neotropics ,rainforest ,Gentry transect ,phylogenetic diversity ,plant diversity ,Biology (General) ,QH301-705.5 - Abstract
Lowland tropical rainforests harbor the most diverse plant communities in the world, but the herbaceous plants of the understory are often overlooked. To address this knowledge gap, we asked to what extent the understory herbaceous community contributes to the species richness and phylogenetic diversity of plant communities by surveying a neotropical rainforest at Los Tuxtlas, Mexico. We used Gentry transects to characterize the woody overstory community, and line-intercepts within the same transects to survey understory herbs and subshrubs. We also used published phylogenies to calculate community phylogenetic diversity with and without the understory stratum. We found that the understory contained a diverse (23 species, or 22.1% of all species surveyed) and phylogenetically distinct plant community dominated by aroids (13 species) and ferns (4 species). Inclusion of the understory stratum increased total species richness by 28.4% but increased phylogenetic diversity by 41.4%. Additionally, in contrast to temperate forests, the understory plant community was much less diverse than the overstory, which contained 81 species > 1 cm dbh (77.9% of all species surveyed). This survey adds to the hitherto small body of literature comparing understory and overstory strata in tropical rainforests and reveals previously overlooked patterns of floristic diversity.
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- 2022
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4. Author Correction: Mutualist and pathogen traits interact to affect plant community structure in a spatially explicit model
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John W. Schroeder, Andrew Dobson, Scott A. Mangan, Daniel F. Petticord, and Edward Allen Herre
- Subjects
Science - Abstract
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
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- 2020
- Full Text
- View/download PDF
5. Fine scale spatial genetic structure in Pouteria reticulata (Engl.) Eyma (Sapotaceae), a dioecious, vertebrate dispersed tropical rain forest tree species
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John W. Schroeder, Hoa T. Tran, and Christopher W. Dick
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Barro Colorado Island ,Dioecy ,Gene dispersal ,Microsatellite ,Neotropical tree ,Spatial genetic structure ,Ecology ,QH540-549.5 - Abstract
Dioecious tropical tree species often have small flowers and fleshy fruits indicative of small-insect pollination and vertebrate seed dispersal. We hypothesize that seed mediated gene flow should be exceed pollen-mediated gene flow in such species, leading to weak patterns of fine scale spatial genetic structure (SGS). In the present study, we characterize novel microsatellite DNA markers and test for SGS in sapling (N=100) and adult trees (N=99) of the dioecious canopy tree Pouteria reticulata (Sapotaceae) in a 50 ha forest dynamics plot on Barro Colorado Island (BCI), Panama. The five genetic markers contained between five and 15 alleles per locus, totaling 51 alleles in the sample population. Significant SGS at local spatial scales (
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- 2014
- Full Text
- View/download PDF
6. Host affinity of endophytic fungi and the potential for reciprocal interactions involving host secondary chemistry
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Ximena Florez‐Buitrago, John W. Schroeder, Luis A. Ramírez-Camejo, Enith I. Rojas, Edward Allen Herre, Sage Palmedo, Autumn Rose, Luis C. Mejía, Natalie Christian, and Brian E. Sedio
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0106 biological sciences ,Cacao ,Host (biology) ,Theobroma ,Fungi ,Plant Science ,Plants ,Biology ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Endophyte ,Plant use of endophytic fungi in defense ,Spore ,Plant Leaves ,Metabolomics ,Botany ,Endophytes ,Genetics ,Psychotria ,Colonization ,Ecology, Evolution, Behavior and Systematics ,010606 plant biology & botany - Abstract
Premise Interactions between fungal endophytes and their host plants present useful systems for identifying important factors affecting assembly of host-associated microbiomes. Here we investigated the role of secondary chemistry in mediating host affinity of asymptomatic foliar endophytic fungi using Psychotria spp. and Theobroma cacao (cacao) as hosts. Methods First, we surveyed endophytic communities in Psychotria species in a natural common garden using culture-based methods. Then we compared differences in endophytic community composition with differences in foliar secondary chemistry in the same host species, determined by liquid chromatography-tandem mass spectrometry. Finally, we tested how inoculation with live and heat-killed endophytes affected the cacao chemical profile. Results Despite sharing a common environment and source pool for endophyte spores, different Psychotria host species harbored strikingly different endophytic communities that reflected intrinsic differences in their leaf chemical profiles. In T. cacao, inoculation with live and heat-killed endophytes produced distinct cacao chemical profiles not found in uninoculated plants or pure fungal cultures, suggesting that endophytes, like pathogens, induce changes in secondary chemical profiles of their host plant. Conclusions Collectively our results suggest at least two potential processes: (1) Plant secondary chemistry influences assembly and composition of fungal endophytic communities, and (2) host colonization by endophytes subsequently induces changes in the host chemical landscape. We propose a series of testable predictions based on the possibility that reciprocal chemical interactions are a general property of plant-endophyte interactions.
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- 2020
7. Host plant phylogeny and abundance predict root‐associated fungal community composition and diversity of mutualists and pathogens
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Jomar M. Barbosa, Itzel Arias‐Del Razo, Jessica T. Martin, Diego F. Angulo, Rodolfo Dirzo, Esther Sebastián-González, John W. Schroeder, and Ramón Perea
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0106 biological sciences ,Ecology ,Host (biology) ,Plant community ,Plant Science ,Biology ,010603 evolutionary biology ,01 natural sciences ,DNA barcoding ,Abundance (ecology) ,Phylogenetics ,Microbiome ,Relative species abundance ,Ecology, Evolution, Behavior and Systematics ,010606 plant biology & botany ,Tropical rainforest - Abstract
Interactions between plants and their root‐associated fungi (RAF) may influence the relative abundance of tree species and determine forest community diversity. Such plant–soil feedbacks in turn depend on the degree to which spatial distance and phylogenetic relatedness of host trees structure pathogen and mutualist communities, but research detailing these aspects of RAF communities is lacking. Here, we characterize plant–RAF associations across a diverse plant community, focusing on the degree to which RAF communities are structured by spatial distance, host phylogenetic relatedness, and host abundance. We compare results for different functional groups, including both putative mutualists and pathogens, an aspect poorly examined hitherto. We collected roots at regular intervals along ten 50 m by 2 m transects, then used DNA barcoding to identify host plants, and characterize the associated fungal community. Variance partitioning was used to measure the relative contributions of host phylogenetic relatedness and spatial distance to explaining RAF community composition. A weighted linear regression was used to measure the correlation between host abundance and RAF diversity. Phylogenetic distance among hosts was a better predictor of RAF community composition than spatial distance, but this relationship was stronger for putative pathogens than for mutualists, suggesting that pathogens show stronger host preference than mutualists. Across all functional groups, RAF showed similar levels of spatial structure. Additionally, RAF communities of locally abundant plants were less diverse than RAF communities of rare plants. Synthesis. We found that RAF communities are structured by the phylogenetic relatedness of hosts and, to a lesser extent, by spatial distance, with pathogens showing stronger host preference than mutualists. Abundant hosts had less diverse RAF communities than rare hosts, which is notable because abundant plants tend to experience weaker negative plant–soil feedback. Going forward, mechanisms underlying the host abundance‐RAF diversity relationship warrant further investigation. Additionally, the survey approach presented here could be paired with experiments linking RAF community composition to plant recruitment.
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- 2019
8. Mutualist and pathogen traits interact to affect plant community structure in a spatially explicit model
- Author
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Daniel F. Petticord, Scott A. Mangan, Edward Allen Herre, John W. Schroeder, and Andrew P. Dobson
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0106 biological sciences ,Science ,General Physics and Astronomy ,Biology ,Affect (psychology) ,010603 evolutionary biology ,01 natural sciences ,Article ,General Biochemistry, Genetics and Molecular Biology ,Microbial ecology ,Abundance (ecology) ,Ecosystem ,lcsh:Science ,Relative species abundance ,Multidisciplinary ,Ecology ,Host (biology) ,fungi ,food and beverages ,Species diversity ,Plant community ,Biodiversity ,General Chemistry ,lcsh:Q ,Theoretical ecology ,Forest ecology ,010606 plant biology & botany ,Diversity (business) - Abstract
Empirical studies show that plant-soil feedbacks (PSF) can generate negative density dependent (NDD) recruitment capable of maintaining plant community diversity at landscape scales. However, the observation that common plants often exhibit relatively weaker NDD than rare plants at local scales is difficult to reconcile with the maintenance of overall plant diversity. We develop a spatially explicit simulation model that tracks the community dynamics of microbial mutualists, pathogens, and their plant hosts. We find that net PSF effects vary as a function of both host abundance and key microbial traits (e.g., host affinity) in ways that are compatible with both common plants exhibiting relatively weaker local NDD, while promoting overall species diversity. The model generates a series of testable predictions linking key microbial traits and the relative abundance of host species, to the strength and scale of PSF and overall plant community diversity., Microbial plant-soil feedbacks (PSF) are fundamentally important for plant diversity. The authors present a spatially explicit dynamic model that separates the effects of microbial mutualists and pathogens, thereby presenting a testable mechanistic framework to reconcile previously puzzling observations of the strength and direction of PSF with diversity maintenance.
- Published
- 2020
9. Community composition and diversity of Neotropical root-associated fungi in common and rare trees
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Diego F. Angulo, Jessica T. Martin, Ramón Perea, Rodolfo Dirzo, Itzel Arias‐Del Razo, Jomar M. Barbosa, John W. Schroeder, and Esther Sebastián-González
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0106 biological sciences ,0301 basic medicine ,Root (linguistics) ,Ecology ,media_common.quotation_subject ,Biology ,010603 evolutionary biology ,01 natural sciences ,03 medical and health sciences ,030104 developmental biology ,Community composition ,Microbial ecology ,Ecology, Evolution, Behavior and Systematics ,Host specificity ,Diversity (politics) ,media_common - Published
- 2018
10. Author Correction: Mutualist and pathogen traits interact to affect plant community structure in a spatially explicit model
- Author
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Edward Allen Herre, Andrew P. Dobson, John W. Schroeder, Scott A. Mangan, and Daniel F. Petticord
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Science ,General Physics and Astronomy ,Biology ,Affect (psychology) ,General Biochemistry, Genetics and Molecular Biology ,Microbial ecology ,Soil ,Species Specificity ,Mycorrhizae ,Author Correction ,Symbiosis ,lcsh:Science ,Ecosystem ,Soil Microbiology ,Feedback, Physiological ,Structure (mathematical logic) ,Multidisciplinary ,Host Microbial Interactions ,Ecology ,Explicit model ,Plant community ,Biodiversity ,General Chemistry ,Models, Theoretical ,Plants ,lcsh:Q ,Theoretical ecology ,Forest ecology ,Algorithms - Abstract
Empirical studies show that plant-soil feedbacks (PSF) can generate negative density dependent (NDD) recruitment capable of maintaining plant community diversity at landscape scales. However, the observation that common plants often exhibit relatively weaker NDD than rare plants at local scales is difficult to reconcile with the maintenance of overall plant diversity. We develop a spatially explicit simulation model that tracks the community dynamics of microbial mutualists, pathogens, and their plant hosts. We find that net PSF effects vary as a function of both host abundance and key microbial traits (e.g., host affinity) in ways that are compatible with both common plants exhibiting relatively weaker local NDD, while promoting overall species diversity. The model generates a series of testable predictions linking key microbial traits and the relative abundance of host species, to the strength and scale of PSF and overall plant community diversity.
- Published
- 2020
11. Effects of cattle management on oak regeneration in northern Californian Mediterranean oak woodlands
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Rodolfo Dirzo, Mar Sobral, Sonia Roig, John W. Schroeder, and Aida López-Sánchez
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0106 biological sciences ,Mediterranean climate ,lcsh:Medicine ,Forests ,01 natural sciences ,California ,Trees ,Quercus ,Grazing ,Spatial and Landscape Ecology ,Animal Husbandry ,lcsh:Science ,Animal Management ,Mammals ,2. Zero hunger ,Agroforests ,Multidisciplinary ,Ecology ,biology ,Agriculture ,Ruminants ,Plants ,Grassland ,Trophic Interactions ,Community Ecology ,Vertebrates ,Livestock ,Research Article ,Conservation of Natural Resources ,education ,Wildlife ,010603 evolutionary biology ,Rangeland management ,Plant-Animal Interactions ,Oaks ,Animals ,Herbivory ,Herbivore ,Plant Dispersal ,business.industry ,Plant Ecology ,Deer ,Ecology and Environmental Sciences ,lcsh:R ,Organisms ,Biology and Life Sciences ,Plant-Herbivore Interactions ,15. Life on land ,biology.organism_classification ,Quercus agrifolia ,Biodiversity hotspot ,Seedlings ,Cattle ,lcsh:Q ,business ,Animal Distribution ,Agroecology ,010606 plant biology & botany - Abstract
Oak woodlands of Mediterranean ecosystems, a major component of biodiversity hotspots in Europe and North America, have undergone significant land-use change in recent centuries, including an increase in grazing intensity due to the widespread presence of cattle. Simultaneously, a decrease in oak regeneration has been observed, suggesting a link between cattle grazing intensity and limited oak regeneration. In this study we examined the effect of cattle grazing on coast live oak (Quercus agrifolia Née) regeneration in San Francisco Bay Area, California. We studied seedling, sapling and adult density of coast live oak as well as vertebrate herbivory at 8 independent sites under two grazing conditions: with cattle and wildlife presence (n = 4) and only with wildlife (n = 4). The specific questions we addressed are: i) to what extent cattle management practices affect oak density, and ii) what is the effect of rangeland management on herbivory and size of young oak plants. In areas with cattle present, we found a 50% reduction in young oak density, and plant size was smaller, suggesting that survival and growth young plants in those areas are significantly limited. In addition, the presence of cattle raised the probability and intensity of herbivory (a 1.5 and 1.8-fold difference, respectively). These results strongly suggest that the presence of cattle significantly reduced the success of young Q. agrifolia through elevated herbivory. Given the potential impact of reduced recruitment on adult populations, modifying rangeland management practices to reduce cattle grazing pressure seems to be an important intervention to maintain Mediterranean oak woodlands.
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- 2014
12. Phase effects on recoil tritium reactions with benzene
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John K. Garland, John W. Schroeder, and Nodie M. Monroe
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Chemical kinetics ,chemistry.chemical_compound ,Recoil ,Polymerization ,Chemistry ,Phase (matter) ,Radiochemistry ,General Engineering ,Tritium ,Physical and Theoretical Chemistry ,Benzene ,Chemical reaction - Published
- 1969
13. Fine scale spatial genetic structure in Pouteria reticulata (Engl.) Eyma (Sapotaceae), a dioecious, vertebrate dispersed tropical rain forest tree species
- Author
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Christopher W. Dick, Hoa T. Tran, and John W. Schroeder
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Tree canopy ,Ecology ,Pollination ,Neotropical tree ,Dioecy ,Seed dispersal ,Gene dispersal ,Microsatellite ,Spatial genetic structure ,Biology ,biology.organism_classification ,Sapotaceae ,Gene flow ,lcsh:QH540-549.5 ,Botany ,Genetic structure ,Biological dispersal ,lcsh:Ecology ,Barro Colorado Island ,Ecology, Evolution, Behavior and Systematics ,Nature and Landscape Conservation - Abstract
Dioecious tropical tree species often have small flowers and fleshy fruits indicative of small-insect pollination and vertebrate seed dispersal. We hypothesize that seed mediated gene flow should be exceed pollen-mediated gene flow in such species, leading to weak patterns of fine scale spatial genetic structure (SGS). In the present study, we characterize novel microsatellite DNA markers and test for SGS in sapling ( N = 100 ) and adult trees ( N = 99 ) of the dioecious canopy tree Pouteria reticulata (Sapotaceae) in a 50 ha forest dynamics plot on Barro Colorado Island (BCI), Panama. The five genetic markers contained between five and 15 alleles per locus, totaling 51 alleles in the sample population. Significant SGS at local spatial scales ( 100 m ) was detected in the sapling ( dbh ≈ 1 cm ) and adult ( dbh ≥ 20 cm ) size classes, but was stronger in the former (sapling S p = 0.010 ± 0.004 , adult S p = 0.006 ± 0.002 ), suggesting demographic thinning. The degree of SGS was lower than the value expected for non-vertebrate dispersed tropical trees ( S p = 0.029 ), but similar to the average value for vertebrate dispersed tropical trees ( S p = 0.009 ) affirming the dispersal potential of vertebrate dispersed tropical trees in faunally intact forests.
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14. Infrared Cloud Scene Radiance Model
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Bernard V. Kessler, David C. Robertson, John W. Schroeder, Robert Haimes, Michael B. Giles, and Alexander Berk
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Pixel ,business.industry ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,Cloud computing ,Atmospheric model ,Geography ,Computer graphics (images) ,Pattern recognition (psychology) ,Radiance ,Clutter ,Naval Surface Warfare Center ,Enhanced Data Rates for GSM Evolution ,business ,Remote sensing - Abstract
The development and evaluation of algorithms to detect targets against cloud backgrounds requires a comprehensive understanding of the clutter properties such as the radiance distributions, textures, edge effects, etc. A number of measurement programs are collecting data for this purpose. However they are limited by the vast amounts of data required, and their limited resources for obtaining the data. This paper will describe and show results from a first principles infrared cloud scene radiance model. The work is sponsored by the Naval Surface Warfare Center (NSWC) through a Small Business Innovative Research Program (SBIR) to support IRAMMP (Infrared Analysis Modeling and Measurement Program -- formerly BMAP) as part of the Navy's Infrared Search and Track effort. The model is designed to handle arbitrary viewing geometries, atmospheric conditions, and sensor parameters. The output is a two dimensional (n x m pixels) scene radiance map which can be used by system designers, data takers, and analysts.
- Published
- 1989
15. Rate of hydrogen diffusion in room-temperature irradiated quartz
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John K. Garland and John W. Schroeder
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Hydrogen ,chemistry ,Radiochemistry ,General Engineering ,chemistry.chemical_element ,Neutron ,Irradiation ,Physical and Theoretical Chemistry ,Diffusion (business) ,Neutron radiation ,Quartz - Published
- 1968
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