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Groundwater is a hidden part of the water cycle due to its subterranean nature but is highly connected to rivers, lakes, and wetlands. In this chapter, we review the physical basis of aquifers (groundwater reservoirs), their hydrodynamics, and hydrogeological parameters (porosity and permeability) that collectively define different types of aquifers. We explore the relationships between groundwater and surface water and define how aquifers function in terms of (1) groundwater flow and transport of solutes and particulate matter; (2) groundwater age, which affects ecosystem processes, physical and biological reactions, and groundwater resources and (3) modeling of the above processes. We also consider the chemical composition of groundwater and the origin of compounds and water-rock interactions that influence water quality. Finally, we discuss chemical and nutrient fluxes in aquifers and biogeochemical reactions, with a focus on oxygen and nitrogen.

The U.S. Forest Service and other federal land managers are responsible for maintaining the productivity of aquatic–riparian ecosystems, the associated native biota, and the ecosystem services they provide. These public lands are important sources of water, recreation opportunities, and habitat for a suite of animals and plants, including many that are protected under the Endangered Species Act. To meet these challenges and responsibilities, recent science suggests modifying practices to provide a broader array of habitat, biological conditions, and ecosystem functions than are associated with traditional management approaches. We suggest that by linking approaches based on natural disturbance and portfolio concepts, managers can achieve a robust strategy and desired outcomes more reliably and cost effectively. Locally complex habitat conditions created by natural disturbances provide the template for biological diversity to play out provided enough time. Accordingly, natural disturbance regimes play an important role in creating and sustaining habitat and biological complexities on the landscape, and management actions can emulate natural disturbance processes at appropriate spatial and temporal scales where possible. The portfolio effect (i.e., diversity that mitigates risk) provides justification for promoting connected heterogeneous habitats that reduce the risk of synchronous large–scale population and ecosystem collapse. In this paper, we describe how disturbance and portfolio concepts fit into a broader strategy of conserving ecosystem integrity and dynamism, and provide examples of how these concepts can be used to address a wide range of management concerns. Ultimately, the outcome for populations, habitats, and landscapes depends on how well environmental change is understood, the degree to which change is appropriately addressed by natural resource managers, and on solutions that allow populations and ecosystems to persist in the presence of and be resilient to a growing scope of human influences.

The process of completing and communicating rigorous, high-impact science depends heavily on obtaining quality peer review prior to publication. As AGU journals strive continually to publish excellent work, we recognize the demand that this places on reviewers' time, especially as most of us seem to receive ever-increasing numbers of requests to review manuscripts. JGR-Earth Surface typically strives to obtain three reviews per manuscript, to best ensure the quality of the science that we publish. We thank the members of the earth-surface community who volunteered their time to complete these reviews for JGR-Earth Surface in 2018: a total of 874 reviews provided by 650 scientists. We greatly appreciate your time, your thoughtful and constructive review comments, and especially your dedication to this all-important part of producing high-quality science.

Salmon that spawn in streams deliver marine-derived nutrients (MDN) that catalyze trophic productivity and support rearing juvenile salmon. Salmon spawning also affects hyporheic exchange and movement of dissolved MDN through the stream bed by creating redd topography that induces pumping exchange and by winnowing fine sediment and loosening the bed, which alters hydraulic conductivity and bed porosity. The spatial extent of spawning within the channel likely governs the volume and rate of dissolved MDN exchanged with the stream bed through this process. To explore this issue, we used a two-dimensional groundwater model to predict changes in hyporheic volume, flux, and mean hydraulic residence time of dissolved MDN as a function of the proportion of the bed surface occupied by redds (P). Predictions indicate that hyporheic volume and flux systematically increase with P, while the mean hydraulic residence time of dissolved MDN in the hyporheic zone decreases sharply with P, from 5.79 h on an unspawned bed (P = 0) to 0.03 h for a mass-spawned bed (P = 1.0). Shorter residence time results from hyporheic flux increasing faster than hyporheic volume with higher P. Implications for uptake of dissolved MDN are explored with Damköhler numbers, defined as the ratio of the mean hydraulic residence time to a biogeochemical rate of interest. Given the considerable influence of spawning on hyporheic exchange, additional research is needed to determine conditions under which bioassimilation of dissolved MDN is limited by nutrient supply, extent of the hyporheic zone, or processing rate of MDN in stream beds.

Where female salmon build nests (“redds”), streambed material is mixed, fine sediment is winnowed, and bed material is moved into a tailspill mound resembling the shape of a dune. Completed redd surfaces are coarser and better sorted than unspawned beds, which is thought to increase redd stability because larger grains are heavier and harder to move, and sorting increases friction angles for mobility. However, spawning also loosens sediment and creates topography that accelerates flow, which can increase particle mobility. We address these factors controlling the relative stability of redds and unspawned beds in flume experiments where redds were constructed with a technique that mimics the nesting behavior of female salmon. Although redds exhibited relatively coarse surfaces, measured entrainment forces indicate particle loosening by spawning lowered grain resistance to motion by 12-37% on average compared to unspawned beds. In addition, for the same discharges, boundary shear stress was 13-41% higher on a redd due to flow convergence on the tailspill. Visual measurements of particle entrainment further indicated redd instability, as bed average shear stress was 22% lower at incipient motion and 29% lower at the discharge that mobilized all grain sizes on a redd. Overall, results demonstrate redds are unstable compared to unspawned beds, which increases the risk of scour for buried eggs, but may facilitate fine-sediment flushing and improve the quality of spawning gravels for future generations of spawners. Therefore, managing salmon returns to increase streambed disturbance may be an effective tool for reducing sedimentation impacts on salmon reproduction. This article is protected by copyright. All rights reserved.

Valley segments, stream reaches, and channel units are three hierarchically nested subdivisions of the drainage network (Frissell et al. 1986), falling in size between landscapes and watersheds (see Chapter 1) and individual point measurements made along the stream network (Table 2.1; also see Chapters 3 and 4). These three subdivisions compose the habitat for large, mobile aquatic organisms such as fishes. Within the hierarchy of spatial scales (Figure 2.1), valley segments, stream reaches, and channel units represent the largest physical subdivisions that can be directly altered by human activities. As such, it is useful to understand how they respond to anthropogenic disturbance, but to do so requires classification systems and quantitative assessment procedures that facilitate accurate, repeatable descriptions and convey information about biophysical processes that create, maintain, and destroy channel structure.

It is widely recognized that high supplies of fine sediment, largely sand, can negatively impact the aquatic habitat quality of gravel-bed rivers, but effects of the style of input (chronic vs. pulsed) have not been examined quantitatively. We hypothesize that a continuous (i.e. chronic) supply of sand will be more detrimental to the quality of aquatic habitat than an instantaneous sand pulse equal to the integrated volume of the chronic supply. We investigate this issue by applying a two-dimensional numerical model to a 1 km long reach of prime salmonid spawning habitat in central Idaho. Results show that in both supply scenarios, sand moves through the study reach as bed load, and that both the movement and depth of sand on the streambed mirrors the hydrograph of this snowmelt-dominated river. Predictions indicate greater and more persistent mortality of salmonid embryos under chronic supplies than pulse inputs, supporting our hypothesis. However, predicted mortality varies both with salmonid species and location of spawning.We found that the greatest impacts occur closer to the location of the sand input under both supply scenarios. Results also suggest that reach-scale morphology may modulate the impact of sand loads, and that under conditions of high sand loading climaterelated increases in flow magnitude could increase embryo mortality through sand deposition, rather than streambed scour.

Snowmelt-dominated basins in northern latitudes provide critical habitat for salmonids. As such, these systems may be especially vulnerable to climate change because of potential shifts in the frequency, magnitude, and timing of flows that can scour incubating embryos. A general framework is presented to examine this issue, using a series of physical models that link climate change, streamflow, and channel morphology to predict the magnitude and spatial distribution of streambed scour and consequent risk to salmonid embryos at basin scales. The approach is demonstrated for a mountain catchment in the Northern Rocky Mountains, USA. Results show that risk of critical scour varies as a function of species and life history and is modulated by local variations in lithology and channel confinement. Embryos of smaller-bodied fall spawners may be at greater risk because of shallow egg burial depths and increased rain-on-snow events during their incubation period. Scour risk for all species is reduced when changes in channel morphology (width, depth, and grain size) keep pace with climate-driven changes in streamflow. Although climate change is predicted to increase scour magnitude, the frequency of scouring events relative to typical salmonid life cycles is relatively low, indicating that individual year classes may be impacted by critical scour, but extirpation of entire populations is not expected. Furthermore, refugia are predicted to occur in unconfined portions of the stream network, where scouring shear stresses are limited to bankfull stage because overbank flows spread across alluvial floodplains; conversely, confined valleys will likely exacerbate climate-driven changes in flow and scour. Our approach can be used to prioritize management strategies according to relative risk to different species or spatial distributions of risk and can be used to predict temporal shifts in the spatial distribution of suitable spawning habitats. A critical unknown issue is whether biological adaptation can keep pace with rates of climate change and channel response. Copyright © 2013 John Wiley & Sons, Ltd.

The delivery and transport of sediment through mountain rivers affects aquatic habitat and water resource infrastructure. While climate change is widely expected to produce significant changes in hydrology and stream temperature, the effects of climate change on sediment yield have received less attention. In the northern Rocky Mountains, we expect climate change to increase sediment yield primarily through changes in temperature and hydrology that promote vegetation disturbances (i.e., wildfire, insect/pathogen outbreak, drought-related die off). Here, we synthesize existing data from central Idaho to explore (1) how sediment yields are likely to respond to climate change in semi-arid basins influenced by wildfire, (2) the potential consequences for aquatic habitat and water resource infrastructure, and (3) prospects for mitigating sediment yields in forest basins. Recent climate-driven increases in the severity and extent of wildfire suggest that basin-scale sediment yields within the next few years to decades could be greater than the long-term average rate of 146 T km-2 year-1 observed for central Idaho. These elevated sediment yields will likely impact downstream reservoirs, which were designed under conditions of historically lower sediment yield. Episodic erosional events (massive debris flows) that dominate post-fire sediment yields are impractical to mitigate, leaving road restoration as the most viable management opportunity for offsetting climate-related increases in sediment yield. However, short-term sediment yields from experimental basins with roads are three orders of magnitude smaller than those from individual fire-related events (on the order of 101 T km-2 year-1 compared to 104 T km-2 year-1, respectively, for similar contributing areas), suggesting that road restoration would provide a relatively minor reduction in sediment loads at the basin-scale. Nevertheless, the ecologically damaging effects of fine sediment (material

Wildfire and debris flows are important physical and ecological drivers in headwater streams of western North America. Past research has primarily examined short-term effects of these disturbances; less is known about longer-term impacts. We investigated wildfire effects on the invertebrate prey base for drift-feeding rainbow trout (Oncorhynchus mykiss, Walbaum) in Idaho headwater streams a decade after wildfire. Three stream types with different disturbance histories were examined: 1) unburned, 2) burned, and 3) burned followed by debris flows that reset channel morphology and riparian vegetation. The quantity of macroinvertebrate drift (biomass density) was more variable within than among disturbance categories. Average body weight and taxonomic richness of drift were significantly related to water temperature and influenced by disturbance history. During the autumn sampling period, the amount of terrestrial insects in rainbow trout diets varied with disturbance history and the amount of overhead canopy along the stream banks. Results indicate that there are detectable changes to macroinvertebrate drift and trout diet a decade after wildfire, and that these responses are better correlated with specific characteristics of the stream (water temperature, canopy cover) than with broad disturbance classes.

Detailed field measurements and simulations of three-dimensional flow structure were used to develop a conceptual model to explain the sustainability of self-formed pool-riffle sequences in gravel-bed rivers. The analysis was conducted at the Red River Wildlife Management Area in Idaho, USA, and enabled characterization of the flow structure through two consecutive pool-riffle sequences, including: identification of jet concentration and dissipation zones, and the development of local turbulence features (i.e. vertical and horizontal eddies) under different flow conditions. Three-dimensional hydraulic simulations were used to evaluate how the flow structure varies across a range of flow conditions and with different degrees of sediment aggradation within the upstream pool. The analysis demonstrated a significant influence of the residual pool depth on the flow structure, with reduced residual depth causing a shift in the orientation of the jet and a reduction in the influence of vertical eddies and the size and intensity of horizontal eddies. The proposed conceptual model seeks to explain the sustainability of pools in terms of the flow structure in pool-riffle morphology and how this flow structure will change as a result of altered external forcing, such as upstream sediment delivery or changes in bank stability.

To comply with legal mandates, meet local management objectives, or both, many federal, state, and tribal organizations have monitoring groups that assess stream habitat at different scales. This myriad of groups has difficulty sharing data and scaling up stream habitat assessments to regional or national levels because of differences in their goals and data collection methods. To assess the performance of and potential for data sharing among monitoring groups, we compared measurements made by seven monitoring groups in 12 stream reaches in northeastern Oregon. We evaluated (1) the consistency (repeatability) of the measurements within each group, (2) the ability of the measurements to reveal environmental heterogeneity, (3) the compatibility of the measurements among monitoring groups, and (4) the relationships of the measurements to values determined from more intensive sampling (detailed measurements used as a standard for accuracy and precision in this study). Overall, we found that some stre...

Hyporheic exchange is the mixing of surface and shallow subsurface water through porous sediment surrounding a river and is driven by spatial and temporal variations in channel characteristics (streambed pressure, bed mobility, alluvial volume and hydraulic conductivity). The significance of hyporheic exchange in linking fluvial geomorphology, groundwater, and riverine habitat for aquatic and terrestrial organisms has emerged in recent decades as an important component of conserving, managing, and restoring riverine ecosystems. Here, we review the causes and environmental effects of hyporheic exchange, and provide a simple mathematical framework for examining the mechanics of exchange. A companion paper explores the potential effects of channel morphology on exchange processes and the hyporheic environments that may result in mountain basins (Buffington and Tonina 2009).

It has been hypothesized that velocity reversals provide a mechanism for maintaining pool-riffle morphology in gravel-bed rivers—an important habitat for salmonids, which are at risk in many places worldwide and that are the focus of extensive environmental legislation in Europe and North America. However, the occurrence of velocity reversals has been controversial for over 3 decades. We present a simple one-dimensional criterion that unifies and explains previous disparate findings regarding the occurrence of velocity reversals. Results show that reversal depends critically on the ratio of riffle-to-pool width, residual pool depth difference between pool and riffle elevations, and on the depth of flow over the riffle, suggesting that land management activities which alter channel form or divert water from the channel can have negative impacts on the sustainability of pool-riffle habitat in gravel-bed rivers.

The potential for forest harvest to increase snowmelt rates in maritime snow climates is well recognized. However, questions still exist about the magnitude of peak flow increases in basins larger than 10 km2 and the geomorphic and biological consequences of these changes. In this study, we used observations from two nearly adjacent small basins (13 and 30 km2) in the Coeur d'Alene River basin, one with recent, relatively extensive, timber harvest, and the other with little disturbance in the last 50 years to explore changes in peak flows due to timber harvest and their potential effects on fish. Peak discharge was computed for a specific rain-on-snow event using a series of physical models that linked predicted values of snowmelt input to a runoff-routing model. Predictions indicate that timber harvest caused a 25% increase in the peak flow of the modelled event and increased the frequency of events of this magnitude from a 9-year recurrence interval to a 3·6-year event. These changes in hydrologic regime, with larger discharges at shorter recurrence intervals, are predicted to increase the depth and frequency of streambed scour, causing up to 15% added mortality of bull trout (Salvelinus confluentus) embryos. Mortality from increased scour, although not catastrophic, may have contributed to the extirpation of this species from the Coeur d'Alene basin, given the widespread timber harvest that occurred in this region. Copyright © 2008 John Wiley & Sons, Ltd.

Previous studies assessing the accuracy of bed-load transport equations have considered equation performance statistically based on paired observations of measured and predicted bed-load transport rates. However, transport measurements were typically taken during low flows, biasing the assessment of equation performance toward low discharges, and because equation performance can vary with discharge, it is unclear whether previous assessments of performance apply to higher, geomorphically significant flows e.g., the bankfull or effective discharges. Nor is it clear whether these equations can predict the effective discharge, which depends on the accuracy of the bed-load transport equation across a range of flows. Prediction of the effective discharge is particularly important in stream restoration projects, as it is frequently used as an index value for scaling channel dimensions and for designing dynamically stable channels. In this study, we consider the geomorphic performance of five bed-load transport equations at 22 gravel-bed rivers in mountain basins of the western United States. Performance is assessed in terms of the accuracy with which the equations are able to predict the effective discharge and its bed-load transport rate. We find that the median error in predicting effective discharge is near zero for all equations, indicating that effective discharge predictions may not be particularly sensitive to one's choice of bed-load transport equation. However, the standard deviation of the prediction error differs between equations ranging from 10% to 60%, as does their ability to predict the transport rate at the effective discharge median errors of less than 1 to almost 2.5 orders of magnitude. A framework is presented for standardizing the transport equations to explain observed differences in performance and to explore sensitivity of effective discharge predictions.

Consistency in determining Rosgen stream types was evaluated in 12 streams within the John Day Basin, northeastern Oregon. The Rosgen classification system is commonly used in the western United States and is based on the measurement of five stream attributes: entrenchment ratio, width-to-depth ratio, sinuosity, slope, and substrate size. Streams were classified from measurements made by three monitoring groups, with each group fielding multiple crews that conducted two to three independent surveys of each stream. In only four streams (33%) did measurements from all crews in all monitoring groups yield the same stream type. Most differences found among field crews and monitoring groups could be attributed to differences in estimates of the entrenchment ratio. Differences in entrenchment ratio were likely due to small discrepancies in determination of maximum bankfull depth, leading to potentially large differences in determination of Rosgen's flood-prone width and consequent values of entrenchment. The result was considerable measurement variability among crews within a monitoring group, and because entrenchment ratio is the first discriminator in the Rosgen classification, differences in the assessment of this value often resulted in different determination of primary stream types. In contrast, we found that consistently evaluated attributes, such as channel slope, rarely resulted in any differences in classification. We also found that the Rosgen method can yield nonunique solutions (multiple channel types), with no clear guidance for resolving these situations, and we found that some assigned stream types did not match the appearance of the evaluated stream. Based on these observations we caution the use of Rosgen stream classes for communicating conditions of a single stream or as strata when analyzing many streams due to the reliance of the Rosgen approach on bankfull estimates which are inherently uncertain.

A general framework is presented for examining the effects of channel type and associated hydraulic roughness on salmonid spawning-gravel availability in mountain catchments. Digital elevation models are coupled with grain-size predictions to provide basin-scale assessments of the potential extent and spatial pattern of spawning gravels. To demonstrate both the model and the significance of hydraulic roughness, we present a scenario for optimizing the spatial extent of spawning gravels as a function of channel type in Pacific Northwest catchments. Predictions indicate that hydraulic roughness could control more than 65% of the potential available spawning habitat at our study sites. Results further indicate that bar roughness can be important for maintaining spawning gravels in lower mainstem reaches, while wood roughness may be required for spawning-gravel maintenance in steeper, upper mainstem channels. Our analysis indicates that wood loss and consequent textural coarsening could deplete up to one third of the potentially usable spawning area at our study sites.

Controls on pool formation are examined in gravel- and cobble-bed rivers in forest mountain drainage basins of northern California, southern Oregon, and southeastern Alaska. We demonstrate that the majority of pools at our study sites are formed by flow obstructions and that pool geometry and frequency largely depend on obstruction characteristics (size, type, and frequency). However, the effectiveness of obstructions to induce scour also depends on channel characteristics, such as channel gradient, width:depth ratio, relative submergence (ratio of flow depth to grain size), and the calibre and rate of bed material supply. Moreover, different reach-scale channel types impose different characteristic physical processes and boundary conditions that further control the occurrence of pools within a catchment. Our findings indicate that effective management of pools and associated aquatic habitat requires consideration of a variety of factors, each of which may be more or less important depending on channel type and location within a catchment. Consequently, strategies for managing pools that are based solely on single-factor, regional target values (e.g. a certain number of wood pieces or pools per stream length) are likely to be ineffective because they do not account for the variety of local and catchment controls on pool scour and, therefore, may be of limited value for proactive management of complex ecosystems. Copyright  2002 John Wiley & Sons, Ltd.

Valley confinement is an important landscape characteristic linked to aquatic habitat, riparian diversity, and geomorphic processes. This report describes a GIS program called the Valley Confinement Algorithm (VCA), which identifies unconfined valleys in montane landscapes. The algorithm uses nationally available digital elevation models (DEMs) at 10-30 m resolution to generate results at subbasin scales (8 digit hydrologic unit). User-defined parameters allow results to be tailored to specific applications and landscapes. Field data were sampled to verify geomorphic characteristics of valley types identified by the program, and a detailed accuracy assessment was conducted to quantify the reliability of the algorithm output.

The well-known doctoral work of Shields is a tale that is frequently recounted by many authors and has spawned a large, continuing body of research over the last 60 years. Despite the success of Shields' work, the details of his experimental methods and results as reported by others are quite variable. Inconsistencies and misconceptions regarding Shields' work are identified and examined here. Incomplete descriptions by Shields, loss of his original data, and Shields' postgraduate absence from the hydraulic engineering community leave some of the identified inconsistencies open to debate.

Using previously published data from flume studies, we test a new approach for quantifying the effects of sediment supply (i.e., bed material supply) on surface grain size of equilibrium gravel channels. Textural response to sediment supply is evaluated relative to a theoretical prediction of competent median grain size (D9 50). We find that surface median grain size (D50) varies inversely with sediment supply rate and systematically approaches the competent value (D9) at low equilibrium transport rates. Furthermore, equilibrium transport rate is a power function of the difference between applied and critical shear stresses and is therefore a power function of the difference between competent and observed median grain sizes (D9 and D50). Consequently, we propose that the difference between predicted and observed median grain sizes can be used to determine sediment supply rate in equilibrium channels. Our analysis framework collapses data from different studies toward a single relationship between sediment supply rate and surface grain size. While the approach appears promising, we caution that it has been tested only on a limited set of laboratory data and a narrow range of channel conditions.

Textural patches (i.e., grain-size facies) are commonly observed in gravel-bed channels and are of significance for both physical and biological processes at subreach scales. We present a general framework for classifying textural patches that allows modification for particular study goals, while maintaining a basic degree of standardization. Textures are classified using a two-tier system of ternary diagrams that identifies the relative abundance of major size classes and subcategories of the dominant size. An iterative procedure of visual identification and quantitative grain-size measurement is used. A field test of our classification indicates that it affords reasonable statistical discrimination of median grain size and variance of bed-surface textures. We also explore the compromise between classification simplicity and accuracy. We find that statistically meaningful textural discrimination requires use of both tiers of our classification. Furthermore, we find that simplified variants of the two-tier scheme are less accurate but may be more practical for field studies which do not require a high level of textural discrimination or detailed description of grain-size distributions. Facies maps provide a natural template for stratifying other physical and biological measurements and produce a retrievable and versatile database that can be used as a component of channel monitoring efforts.

Alexander L. Densmore et al . (Reports,[17 Jan., p. 369][1]) address an important geomorphologic question: What is the relative importance of large, infrequent, slope-clearing events (SCEs) in determining hillslope longitudinal profiles? To model the frequency and magnitude distribution of SCEs

Data compiled from eight decades of incipient motion studies were used to calculate dimensionless critical shear stress values of the median grain size, t* c 50 . Calculated t* c 50 values were stratified by initial motion definition, median grain size type (surface, subsurface, or laboratory mixture), relative roughness, and flow regime. A traditional Shields plot constructed from data that represent initial motion of the bed surface material reveals systematic methodological biases of incipient motion definition; t* c 50 values determined from reference bed load transport rates and from visual observation of grain motion define subparallel Shields curves, with the latter generally underlying the former; values derived from competence functions define a separate but poorly developed field, while theoretical values predict a wide range of generally higher stresses that likely represent instantaneous, rather than time-averaged, critical shear stresses. The available data indicate that for high critical boundary Reynolds numbers and low relative roughnesses typical of gravel-bedded rivers, reference-based and visually based studies have t* c50 ranges of 0.052-0.086 and 0.030-0.073, respectively. The apparent lack of a universal t*50 for gravel-bedded rivers warrants great care in choosing defendable t* c50 values for particular applications.

A classification of channel-reach morphology in mountain drainage basins synthesizes stream morphologies into seven distinct reach types: colluvial, bedrock, and five alluvial channel types (cascade, step pool , plane bed, pool rime, and dune ripple). Coupling reach-level channel processes with the spatial arrangement of reach morphologies, their links to hillslope processes, and external forcing by confinement, ripar­ ian vegetation, and woody debris defines a process-based framework within which to assess channel condition and response potential in mountain drainage basins. Field investigations demonstrate character­ istic slope, grain size, shear stress, and roughness ranges for different reach types, observations consistent with our hypothesis that alluvial channel morphologies reflect specific roughness configurations ad­ justed to the relative magnitudes of sediment supply and transport ca­ pacity. Steep alluvial channels (cascade and step pool) have high ratios of transport capacity to sediment supply and are resilient to changes in discharge and sediment supply, whereas low-gradient alluvial channels (pool rime and dune ripple) have lower transport capacity to supply ra­ tios and thus exhibit significant and prolonged response to changes in sediment supply and discharge. General differences in the ratio of transport capacity to supply between channel types allow aggregation of reaches into source, transport, and response segments, the spatial distribution of which provides a watershed-level conceptual model linking reach morphology and channel processes. These two scales of channel network classification define a framework within which to in­ vestigate spatial and temporal patterns of channel response in moun­ tain drainage basins.

Bed scour, egg pocket depths, and alteration of stream-bed surfaces by spawning chum salmon (Onchorhynchus keta) were measured in two Pacific Northwest gravel-bedded streams. Close correspondence between egg burial depths and scour depths during the incubation period suggests an adaptation to typical depths of bed scour and indicates that even minor increases in the depth of scour could significantly reduce embryo survival. Where egg burial depths are known, expressing scour depth in terms of bed-load transport rate provides a means for predicting embryo mortality resulting from changes in watershed processes that alter shear stress or sediment supply. Stream-bed alteration caused by mass spawning also may influence embryo survival. Theoretical calculations indicate that spawning-related bed surface coarsening, sorting, and form drag reduce grain mobility and lessen the probability of stream-bed scour and excavation of buried salmon embryos. This potential feedback between salmon spawning and bed mobility implies that it could become increasingly difficult to reverse declines in mass-spawning populations because decreased spawning activity would increase the potential for bed scour, favoring higher embryo mortality. Further analysis of this effect is warranted, however, as the degree to which spawning-related bed loosening counteracts reduced grain mobility caused by surface coarsening, sorting, and redd form drag remains uncertain.

Multivariate statistical analyses of geomorphic variables from 23 forest stream reaches in southeast Alaska result in successful discrimination between pristine streams and those disturbed by land management, specifically timber harvesting and associated road building. Results of discriminant function analysis indicate that a three-variable model discriminates 10 disturbed from 13 undisturbed reaches with 90 per cent and 92 per cent correct classification respectively. These variables are the total number of pools per reach, the ratio of mean residual pool depth to mean bankfull depth, and the ratio of critical shear stress of the median surface grain size to bankfull shear stress. The last variable can be dropped without a decrease in rate of correct classification; however, the resulting two-variable model may be less robust. Analysis of the distribution of channel units, including pool types, can also be used to discriminate disturbed from undisturbed reaches and is particularly useful for assessment of aquatic habitat condition. However, channel unit classification and inventory can be subject to considerable error and observer bias. Abundance of pool-related large woody debris is highly correlated with pool frequency and is an important factor determining channel morphology. Results of this study yield a much needed, objective, geomorphic discrimination of pristine and disturbed channel conditions, providing a reference standard for channel assessment and restoration efforts.

Field surveys of stream channels in forested mountain drainage basins in southeast Alaska and Washington reveal that pool spacing depends on large woody debris (LWD) loading and channel type, slope, and width. Mean pool spacing in pool-riffle, plane-bed, and forced pool-riffle channels systematically decreases from greater than 13 channel widths per pool to less than 1 channel width with increasing LWD loading, whereas pool spacing in generally steeper, step-pool channels is independent of LWD loading. Although plane-bed and pool-riffle channels occur at similar low LWD loading, they exhibit typical pool spacings of greater than 9 and 2–4 channel widths, respectively. Forced pool-riffle channels have high LWD loading, typical pool spacing of

[1] Hyporheic flow results from the interaction between streamflow and channel morphology and is an important component of stream ecosystems because it enhances water and solute exchange between the river and its bed. Hyporheic flow in pool-riffle channels is particularly complex because of three-dimensional topography that spans a range of partially to fully submerged conditions, inducing both static and dynamic head variations. Hence, these channels exhibit transitional conditions of streambed pressure and hyporheic flow compared to previous studies of fully submerged, two-dimensional bed forms. Here, we conduct a series of three-dimensional simulations to investigate the effects of bed topography, depth of alluvium, and stream discharge on hyporheic flow in pool-riffle reaches with variable bed form submergence, and we propose three empirical formulae to predict the mean depth of hyporheic exchange and characteristic values of the residence time distribution (mean and standard deviation). Hyporheic exchange is predicted with a three-dimensional pumping model, and hyporheic flow is modeled as a Darcy flow. We find that the hyporheic residence time is well approximated by a lognormal distribution for both partially and entirely submerged pool-riffle topography, with the parameters of the distribution defined by the mean and variance of the log-transformed residence time. Depth of alluvium has a substantial effect on hyporheic flow when alluvial depth is less than a third of the bed form wavelength for the conditions examined.

Process-based restoration aims to reestablish normative rates and magnitudes of physical, chemical, and biological processes that sustain river and floodplain ecosystems. Ecosystem conditions at any site are governed by hierarchical regional, watershed, and reach-scale processes controlling hydrologic and sediment regimes; floodplain and aquatic habitat dynamics; and riparian and aquatic biota. We outline and illustrate four process-based principles that ensure river restoration will be guided toward sustainable actions: (1) restoration actions should address the root causes of degradation, (2) actions must be consistent with the physical and biological potential of the site, (3) actions should be at a scale commensurate with environmental problems, and (4) actions should have clearly articulated expected outcomes for ecosystem dynamics. Applying these principles will help avoid common pitfalls in river restoration, such as creating habitat types that are outside of a site's natural potential, attempting to build static habitats in dynamic environments, or constructing habitat features that are ultimately overwhelmed by unconsidered system drivers.

We report the first measurements of friction angles for a naturally formed gravel streambed. For a given test grain size placed on a bed surface, friction angles varied from 10o to over 100o; friction angle distributions can be expressed as a function of test grain size, median bed grain size, and bed sorting parameter. Friction angles decrease with increasing grain size relative to the median bed grain size, and are a systematic function of sorting, with lower friction angles associated with poorer sorting. The probability distributions of critical shear stress for different grain sizes on a given bed surface, as calculated from our friction angle data, show a common origin, but otherwise diverge with larger grains having narrower and lower ranges of critical shear stresses. The potential mobility of a grain, as defined by its probability distribution of critical shear stress, may be overestimated for larger grains in this analysis, because our calculations do not take into account the effects of grain burial and altered near-bed flow fields.

River systems have been altered worldwide by dams and diversions, resulting in a broad array of environmental impacts. The use of a process-based, hierarchical framework for assessing environmental impacts of dams is explored here in terms of a case study of the Kootenai River, western North America. The goal of the case study is to isolate and quantify the relative effects of multiple dams and other river management activities within the study area and to inform potential restoration strategies. In our analysis, first-order impacts describe broad changes in hydrology (determined from local stream gages), secondorder impacts quantify resultant changes in channel hydraulics and bed mobility (predicted from a 1D flow model), and third-order impacts describe consequences for recruitment of riparian trees (recruitment box analysis). The study area is a 233 km reach bounded by two dams (Libby and Corra Linn). Different times of dam emplacement (1974 and 1938, respectively) allow separation of their relative impacts. Results show significant changes in 1) the timing, magnitude, frequency, duration and rate of change of flows, 2) the spatial and temporal patterns of daily stage fluctuation, unit stream power, shear stress, and bed mobility, and 3) the potential for cottonwood recruitment (Populus spp.). We find that Libby Dam is responsible for the majority of first and second-order impacts, but that both dams diminish cottonwood recruitment; operation of Corra Linn adversely affects recruitment in the lower portion of the study reach by increasing stage recession rates during the seedling establishment period, while operation of Libby Dam affects recruitment in the middle and upper portions of the study reach by changing the timing, magnitude, and duration of flow. We also find that recent experimental flow releases initiated in the 1990s to stimulate recovery of endangered native fish may have fortuitous positive effects on cottonwood recruitment potential in the lower portion of the river. This case study demonstrates how a process-based, hierarchical framework can be used for quantifying environmental impacts of dam operation over space and time, and provides an approach for evaluating alternative management strategies. Published by Elsevier Ltd.

[1] In the paper ‘‘A general power equation for predicting bed load transport rates in gravel bed rivers’’ by Jeffrey J. Barry et al. (Water Resources Research, 40, W10401, doi:10.1029/2004WR003190, 2004), the y axis for Figures 5 and 10 was incorrectly labeled and should have read ‘‘log10 (predicted transport) – log10 (observed transport).’’ In addition, flow depth (D) is incorrectly shown in the denominator of equation (A9) of Barry et al. [2004] and should be replaced by di, the mean particle diameter for the ith size class as shown below