1. Oligonucleotide Tagging for Copper-Free Click Conjugation
- Author
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Alan Rowan, Floris L. van Delft, John C. Hodges, Nancy S. Barta, Brian Gibson, Anup M. Jawalekar, Jorge M. M. Verkade, and Sudip Malik
- Subjects
copper-free click ,oligonucleotide conjugation ,bicyclononyne ,azide ,strain-promoted cycloaddition ,Organic chemistry ,QD241-441 - Abstract
Copper-free click chemistry between cyclooctynes and azide is a mild, fast and selective technology for conjugation of oligonucleotides. However, technology for site-specific introduction of the requisite probes by automated protocols is scarce, while the reported cyclooctynes are large and hydrophobic. In this work, it is demonstrated that the introduction of bicyclo[6.1.0]nonyne (BCN) into synthetic oligonucleotides is feasible by standard solid-phase phosphoramidite chemistry. A range of phosphoramidite building blocks is presented for incoporation of BCN or azide, either on-support or in solution. The usefulness of the approach is demonstrated by the straightforward and high-yielding conjugation of the resulting oligonucleotides, including biotinylation, fluorescent labeling, dimerization and attachment to polymer.
- Published
- 2013
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