1. Profiling microRNA from nephrectomy and biopsy specimens: predictors of progression and survival in clear cell renal cell carcinoma
- Author
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Kimberly M. Rieger-Christ, Travis Sullivan, John A. Libertino, Patrick Teebagy, Eric J. Burks, David Canes, John M. Dugan, Casey Kowalik, and Drew Palmer
- Subjects
Adult ,Male ,0301 basic medicine ,Pathology ,medicine.medical_specialty ,Microarray ,Biopsy ,Urology ,medicine.medical_treatment ,Kaplan-Meier Estimate ,Kidney ,Nephrectomy ,Sensitivity and Specificity ,Metastasis ,Cohort Studies ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Cluster Analysis ,Humans ,Carcinoma, Renal Cell ,Aged ,Aged, 80 and over ,medicine.diagnostic_test ,Proportional hazards model ,business.industry ,Gene Expression Profiling ,Middle Aged ,Microarray Analysis ,medicine.disease ,Kidney Neoplasms ,Gene expression profiling ,MicroRNAs ,Clear cell renal cell carcinoma ,030104 developmental biology ,030220 oncology & carcinogenesis ,Disease Progression ,Biomarker (medicine) ,Female ,business - Abstract
Objective To identify miRNA characteristic of metastatic clear cell renal cell carcinoma (ccRCC) and those indicative of cancer specific survival in nephrectomy and biopsy specimens. We also sought to determine if a miRNA panel could differentiate benign from ccRCC tissue. Materials and Methods RNA was isolated from nephrectomy and kidney biopsy specimens (n=156; n=46 respectively). Samples were grouped: benign, non-progressive and progressive ccRCC. MiRNA were profiled by microarray and validated by qRT-PCR. Biomarker signatures were developed to predict cancer status in nephrectomy and biopsy specimens. Cancer specific survival was examined using Kaplan-Meier and Cox proportional hazards analyses. Results Microarray analysis revealed 20 differentially expressed miRNA comparing non-progressive with progressive tumors. A biomarker signature validated in nephrectomy specimens had a sensitivity of 86.7% and a specificity of 92.9% for differentiating benign and ccRCC. A second signature differentiated non-progressive versus progressive ccRCC with a sensitivity of 93.8% and a specificity of 83.3%. These biomarkers also discriminated cancer status in biopsy specimens. Levels of miR-10a-5p, -10b-5p, and -223-3p were associated with cancer specific survival. Conclusion This study identified miRNA differentially expressed in ccRCC samples; as well as those correlating with cancer specific survival. Biomarkers identified in this study have the potential to identify patients who are likely to have progressive ccRCC, and although preliminary, these results may aid in differentiating aggressive and indolent ccRCC based on biopsy specimens. This article is protected by copyright. All rights reserved.
- Published
- 2017