40 results on '"Joanne Ellis"'
Search Results
2. Broad-scale spatial distribution patterns of soft-sediment macrobenthic communities in the Red Sea
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Susana Carvalho, Zahra Alsaffar, Joanne Ellis, Hamed Alghamdi, and João Cúrdia
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habitat heterogeneity ,geographical distance ,environmental distance ,subtropics ,macrofauna assemblages ,beta-diveristy ,Science ,General. Including nature conservation, geographical distribution ,QH1-199.5 - Abstract
In sub-tropical and tropical regions, the diversity patterns of soft-sediment macrobenthic communities are still poorly understood, particularly when compared to temperate shelf environments. The present study investigates spatial patterns of variability in macrobenthic distribution along the eastern Red Sea margin, and the role of sediment composition and other explanatory variables in determining such patterns. This study has two main objectives: (i) to produce a baseline characterization of the Saudi Arabian Red Sea macrobenthic infauna, particularly along the central and southern regions, (ii) to assess the relative contribution of two major processes driving macrobenthic communities (i.e., dispersal-based and environmental filtering), based on changes on beta-diversity components (turnover and nestedness) across multiple scales (up to ~600km), using relevant modeling methodologies. Shallow soft-sediment macrobenthic communities in the Red Sea showed extremely high small-scale variability, highlighted by the percentage of rare species (44% of species present at a single sample) and the dominance of turnover (species replacement) over nestedness. Our results also suggest a strong influence of broad- over fine-scale variation in the species composition. However, sedimentary characteristics, particularly grain-size, played a critical role governing the distribution patterns of soft-sediment macrobenthic communities in the Red Sea. Our findings highlight the importance of regional factors in shaping the macrofaunal community composition whilst also highlighting the role of high species diversity at local scales. The current results suggest the need for conservation measures from regional levels (to maintain genetic diversity) to local levels (to preserve the high occurrence of rare species). To our knowledge, no other study investigated the distribution of Red Sea marine species over large spatial scales combining modeling methods and the partitioning of beta-diversity. The current approach applied to soft-sediment macroinvertebrates can be extended to other marine communities since conservation strategies can be more effective when mechanisms governing species distribution are considered.
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- 2023
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3. Cetacean conservation planning in a global diversity hotspot: dealing with uncertainty and data deficiencies
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Fabrice Stephenson, Judi E. Hewitt, Leigh G. Torres, Théophile L. Mouton, Tom Brough, Kimberly T. Goetz, Carolyn J. Lundquist, Alison B. MacDiarmid, Joanne Ellis, and Rochelle Constantine
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New Zealand ,richness ,spatial prioritization ,species distribution models ,uncertainty ,Ecology ,QH540-549.5 - Abstract
Abstract Many cetacean species are at risk from anthropogenic disturbances including climate change, pollution, and habitat degradation. Identifying cetacean hotspots for conservation management is therefore required. Aotearoa–New Zealand waters are used by 53% of the world’s cetacean species and are a global cetacean diversity hotspot. Using geographic predictions of cetacean taxa, we aimed to identify important areas within New Zealand waters using two methods: estimates of cetacean richness and a spatial prioritization analysis. For both methods, we investigated how varying levels of uncertainty in predictions of the taxa’ occurrence layers would affect our interpretation of cetacean hotspots. Despite some marked spatial differences in distribution of important areas for cetacean diversity, both methods, across all uncertainty scenarios, highlighted six distinct deep offshore regions as important habitat. Generally, inshore areas had lower richness estimates than offshore areas, but these remain important for conservation for species with limited ranges (e.g., the endemic Māui and Hector’s dolphins), and in some places had similar richness values to offshore hotspots. Furthermore, inshore hotspots had lower uncertainty in predicted taxa distribution and richness estimates. The use of two different uncertainty estimates allows the integration of distributional information from differing sources (different modeling methods with varying numbers of cetacean records) to be integrated in a robust and conservative way. Identification of cetacean hotspots with varying levels of uncertainty provides a robust and efficient step toward prioritizing areas for conservation management in a participatory process.
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- 2021
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4. Potential feminization of Red Sea turtle hatchlings as indicated by in situ sand temperature profiles
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Lyndsey K. Tanabe, Joanne Ellis, Islam Elsadek, and Michael L. Berumen
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climate change ,hatchling success ,sand temperature ,temperature‐dependent sex determination ,Ecology ,QH540-549.5 ,General. Including nature conservation, geographical distribution ,QH1-199.5 - Abstract
Abstract Climate change poses a serious threat to species that demonstrate temperature‐dependent sex determination, including marine turtles. Increased temperatures can result in highly female‐skewed sex ratios and decreased hatching success. The pivotal temperature that delineates hatchling sex ratios is commonly considered to be 29.2°C, but whether this threshold applies to turtles in the Red Sea region has not been tested in situ. For all species of marine turtles, there is a supposed thermal range of 25–33°C in which egg incubation is successful, with prolonged temperatures above 33°C resulting in morphological abnormalities and hatchling mortality. Sand temperature data were collected from May–September 2018 from the average nesting depth of hawksbill (Eretmochelys imbricata) and green turtles (Chelonia mydas) at five study sites. We calculated the expected sex ratio based on a maximum likelihood model. The sand temperature profile at four of the sites exceeded the pivotal temperature (29.2°C) throughout the study duration, which suggests feminization of turtles could be occurring; however, the pivotal temperature in this region still needs to be empirically confirmed. The percentage of days with sand temperature exceeding the maximum thermal threshold between June 3, and September 16, 2018, was site‐specific rather than determined by latitudinal temperature gradients, and ranged between 0 and 100% of days. Maximum temperature recordings were as high as 36.0 and 35.3°C at 30 and 50 cm depth, respectively. Nesting sites in the Red Sea region could already be exceeding the thermal limits and may be particularly vulnerable to rising temperatures. Sites with lower sand temperatures, such as Small Gobal Island, may represent priority areas for conservation efforts. Alternatively, local adaptation may be a reality under extremely warm conditions, thus, further research into the thermal tolerance of hatchlings in the region could provide insight on how they might adapt to future climate change.
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- 2020
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5. Microbial planktonic communities in the Red Sea: high levels of spatial and temporal variability shaped by nutrient availability and turbulence
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John K. Pearman, Joanne Ellis, Xabier Irigoien, Y. V. B. Sarma, Burton H. Jones, and Susana Carvalho
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Medicine ,Science - Abstract
Abstract The semi-enclosed nature of the Red Sea (20.2°N–38.5°N) makes it a natural laboratory to study the influence of environmental gradients on microbial communities. This study investigates the composition and structure of microbial prokaryotes and eukaryotes using molecular methods, targeting ribosomal RNA genes across different regions and seasons. The interaction between spatial and temporal scales results in different scenarios of turbulence and nutrient conditions allowing for testing of ecological theory that categorizes the response of the plankton community to these variations. The prokaryotic reads are mainly comprised of Cyanobacteria and Proteobacteria (Alpha and Gamma), with eukaryotic reads dominated by Dinophyceae and Syndiniophyceae. Periodic increases in the proportion of Mamiellophyceae and Bacillariophyceae reads were associated with alterations in the physical oceanography leading to nutrient increases either through the influx of Gulf of Aden Intermediate Water (south in the fall) or through water column mixing processes (north in the spring). We observed that in general dissimilarity amongst microbial communities increased when nutrient concentrations were higher, whereas richness (observed OTUs) was higher in scenarios of higher turbulence. Maximum abundance models showed the differential responses of dominant taxa to temperature giving an indication how taxa will respond as waters become warmer and more oligotrophic.
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- 2017
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6. Cross shelf benthic biodiversity patterns in the Southern Red Sea
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Joanne Ellis, Holger Anlauf, Saskia Kürten, Diego Lozano-Cortés, Zahra Alsaffar, Joao Cúrdia, Burton Jones, and Susana Carvalho
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Medicine ,Science - Abstract
Abstract The diversity of coral reef and soft sediment ecosystems in the Red Sea has to date received limited scientific attention. This study investigates changes in the community composition of both reef and macrobenthic communities along a cross shelf gradient. Coral reef assemblages differed significantly in species composition and structure with location and depth. Inner shelf reefs harbored less abundant and less diverse coral assemblages with higher percentage macroalgae cover. Nutrient availability and distance from the shoreline were significantly related to changes in coral composition and structure. This study also observed a clear inshore offshore pattern for soft sediment communities. In contrast to the coral reef patterns the highest diversity and abundance of soft sediment communities were recorded at the inshore sites, which were characterized by a higher number of opportunistic polychaete species and bivalves indicative of mild disturbance. Sediment grain size and nutrient enrichment were important variables explaining the variability. This study aims to contribute to our understanding of ecosystem processes and biodiversity in the Red Sea region in an area that also has the potential to provide insight into pressing topics, such as the capacity of reef systems and benthic macrofaunal organisms to adapt to global climate change.
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- 2017
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7. Group elicitations yield more consistent, yet more uncertain experts in understanding risks to ecosystem services in New Zealand bays.
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Gerald G Singh, Jim Sinner, Joanne Ellis, Milind Kandlikar, Benjamin S Halpern, Terre Satterfield, and Kai Chan
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Medicine ,Science - Abstract
The elicitation of expert judgment is an important tool for assessment of risks and impacts in environmental management contexts, and especially important as decision-makers face novel challenges where prior empirical research is lacking or insufficient. Evidence-driven elicitation approaches typically involve techniques to derive more accurate probability distributions under fairly specific contexts. Experts are, however, prone to overconfidence in their judgements. Group elicitations with diverse experts can reduce expert overconfidence by allowing cross-examination and reassessment of prior judgements, but groups are also prone to uncritical "groupthink" errors. When the problem context is underspecified the probability that experts commit groupthink errors may increase. This study addresses how structured workshops affect expert variability among and certainty within responses in a New Zealand case study. We find that experts' risk estimates before and after a workshop differ, and that group elicitations provided greater consistency of estimates, yet also greater uncertainty among experts, when addressing prominent impacts to four different ecosystem services in coastal New Zealand. After group workshops, experts provided more consistent ranking of risks and more consistent best estimates of impact through increased clarity in terminology and dampening of extreme positions, yet probability distributions for impacts widened. The results from this case study suggest that group elicitations have favorable consequences for the quality and uncertainty of risk judgments within and across experts, making group elicitation techniques invaluable tools in contexts of limited data.
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- 2017
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8. Correction: Group elicitations yield more consistent, yet more uncertain experts in understanding risks to ecosystem services in New Zealand bays.
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Gerald G Singh, Jim Sinner, Joanne Ellis, Milind Kandlikar, Benjamin S Halpern, Terre Satterfield, and Kai Chan
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Medicine ,Science - Abstract
[This corrects the article DOI: 10.1371/journal.pone.0182233.].
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- 2017
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9. New Zealand's media and the crisis in the ocean: News norms and scientific urgency
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Maria Armoudian, Grace Stevens, Fabrice Stephenson, and Joanne Ellis
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Ecology ,Aquatic Science ,Nature and Landscape Conservation - Published
- 2023
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10. Implications for the Conservation of Deep-Water Corals in the Face of Multiple Stressors: A Case Study from the New Zealand Region
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Fabrice Stephenson, Ashley A. Rowden, Owen F. Anderson, Joanne Ellis, Shane Geange, Tom Brough, Erik Behrens, Judi Hewitt, Malcolm Clark, Dianne M. Tracey, Savannah L. Goode, Grady L. Petersen, and Carolyn Lundquist
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- 2023
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11. Depletion of LAG‐3 + T Cells Translated to Pharmacology and Improvement in Psoriasis Disease Activity: A Phase I Randomized Study of mAb GSK2831781
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Christopher J. Delves, Caroline O. S. Savage, Tim S. Schmidt, Lea Fortunato, Emilie Charles, Thomas Matthew Webb, Lia Liefaard, Nicolas Wisniacki, John Stone, Rainard Fuhr, Sara Brett, Stephen A. Hughes, Ruth M. Tarzi, Muna Albayaty, Christine Barrett, Ken Edwards, Karen Leavens, Katherine Nevin, Rabia Anselm, Joanne Ellis, Shuo Tang, Martin Coenen, T.G. Hopkins, N Srinivasan, Yi Cui, Daniel J.B. Marks, Anna Richards, and Maria Feeney
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Pharmacology ,Antibody-dependent cell-mediated cytotoxicity ,business.industry ,GSK2831781 ,T cell ,medicine.disease ,030226 pharmacology & pharmacy ,Proinflammatory cytokine ,03 medical and health sciences ,0302 clinical medicine ,medicine.anatomical_structure ,Tolerability ,030220 oncology & carcinogenesis ,Psoriasis ,medicine ,Pharmacology (medical) ,business ,Receptor ,CD8 - Abstract
Activated T cells drive a range of immune-mediated inflammatory diseases. LAG-3 is transiently expressed on recently activated CD4+ and CD8+ T cells. We describe the engineering and first-in-human clinical study (NCT02195349) of GSK2831781 (an afucosylated humanized IgG1 monoclonal antibody enhanced with high affinity for Fc receptors and LAG-3 and antibody-dependent cellular cytotoxicity capabilities), which depletes LAG-3 expressing cells. GSK2831781 was tested in a phase I/Ib, double-blind, placebo-controlled clinical study, which randomized 40 healthy participants (part A) and 27 patients with psoriasis (part B) to single doses of GSK2831781 (up to 0.15 and 5 mg/kg, respectively) or placebo. Adverse events were generally balanced across groups, with no safety or tolerability concern identified. LAG-3+ cell depletion in peripheral blood was observed at doses ≥ 0.15 mg/kg and was dose-dependent. In biopsies of psoriasis plaques, a reduction in mean group LAG-3+ and CD3+ T-cell counts was observed following treatment. Downregulation of proinflammatory genes (IL-17A, IL-17F, IFNγ, and S100A12) and upregulation of the epithelial barrier integrity gene, CDHR1, was observed with the 5 mg/kg dose of GSK2831781. Psoriasis disease activity improved up to day 43 at all GSK2831781 doses (0.5, 1.5, and 5 mg/kg) compared with placebo. Depletion of LAG-3-expressing activated T cells is a novel approach, and this first clinical study shows that GSK2831781 is pharmacologically active and provides encouraging early evidence of clinical effects in psoriasis, which warrants further investigation in T-cell-mediated inflammatory diseases.
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- 2020
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12. Assessing ecological health in areas with limited data by using biological traits
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Judi Hewitt, Johanna Gammal, and Joanne Ellis
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Phenotype ,Animals ,Aquatic Science ,Oceanography ,Pollution ,Invertebrates ,Sensitivity and Specificity ,Ecosystem ,Environmental Monitoring - Abstract
A multitude of biotic indices that represent environmental status have been developed over the past decades making status comparisons difficult. However, transferring an existing index to a new region can be problematic due to differing stressors, ecosystem components and lack of knowledge on regional species sensitivities. Here we assess whether calculating species sensitivities to specific stressors based on biological traits offers a solution. We use biological traits of macrofaunal species to assess sensitivity to suspended sediment concentrations and calculated the Benthic Quality Index (BQI) at 47 sites across a suspended sediment gradient. This trait-based modification of the BQI was well correlated (0.82) to suspended sediment. Problems previously highlighted, relating to trait plasticity and differential weightings of indifferent and beneficial species, were investigated but did not strongly affect results. A trait-based approach has the additional benefit that the data could be easily converted to evaluate ecosystem function.
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- 2022
13. Evidence of Rebound Effect in New Zealand Mpas: Unintended Consequences of Spatial Management Measures
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Tai Lohrer, Judi Hewitt, Andrew Lohrer, Darren Parsons, Joanne Ellis, and Fabrice Stephenson
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History ,Polymers and Plastics ,Business and International Management ,Industrial and Manufacturing Engineering - Published
- 2022
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14. Renewable Methanol with Ignition Improver Additive for Diesel Engines
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Rasmus Pettinen, Pekka Piimäkorpi, Christer Söderström, Martin Tuner, Matti Niinistö, Mårten Westerholm, Timo Murtonen, Päivi Aakko-Saksa, Joanne Ellis, Päivi Koponen, and Piritta Roslund
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General Chemical Engineering ,Energy Engineering and Power Technology ,02 engineering and technology ,law.invention ,chemistry.chemical_compound ,Diesel fuel ,Lubricity ,020401 chemical engineering ,law ,SDG 13 - Climate Action ,Ethanol fuel ,SDG 7 - Affordable and Clean Energy ,0204 chemical engineering ,Waste management ,business.industry ,021001 nanoscience & nanotechnology ,Fuel injection ,Renewable energy ,Ignition system ,Fuel Technology ,chemistry ,Environmental science ,Methanol ,0210 nano-technology ,Inlet manifold ,business - Abstract
Reduced emissions and environmental burden from shipping are an important aim of tightening emission regulations and ambitious climate change strategy. Renewable methanol produced from biomass or from other renewable sources represents one option to face these challenges. We studied the potential of renewable methanol to offer such benefits in diesel operation in a Scania ethanol engine, which is designed for additized ethanol fuel (ED95) containing ignition improver and lubricity additives. Methanol (MD95) with several types of ignition improver and lubricity additives was studied for use in diesel engines. MD95 fuels were clean-burning, emitting even less gaseous emissions than ED95, particularly when glycerol ethoxylate was used as an ignition improver. Particle mass and number emissions originating from additives in the experimental fuels could be reduced with an oxidation catalyst. Reduced additive dosing in the MD95 fuels was studied with the aid of fuel injection into the intake manifold. Overall, the results showed that the monofuel MD95 concept is a promising solution for smaller vessels equipped with 800-1200 kW engines. © (Less)
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- 2020
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15. Depletion of LAG-3
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Joanne, Ellis, Daniel, J B Marks, Naren, Srinivasan, Christine, Barrett, Thomas G, Hopkins, Anna, Richards, Rainard, Fuhr, Muna, Albayaty, Martin, Coenen, Lia, Liefaard, Karen, Leavens, Katherine L, Nevin, Shuo, Tang, Stephen A, Hughes, Léa, Fortunato, Ken, Edwards, Yi, Cui, Rabia, Anselm, Christopher J, Delves, Emilie, Charles, Maria, Feeney, Thomas M, Webb, Sara J, Brett, Tim S, Schmidt, John, Stone, Caroline O S, Savage, Nicolas, Wisniacki, and Ruth M, Tarzi
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Adult ,Male ,CD3 Complex ,T-Lymphocytes ,Research ,Dose-Response Relationship, Immunologic ,Antibodies, Monoclonal ,Articles ,Middle Aged ,Lymphocyte Activation Gene 3 Protein ,Article ,Treatment Outcome ,Gene Expression Regulation ,Antigens, CD ,Humans ,Psoriasis ,Female - Abstract
Activated T cells drive a range of immune‐mediated inflammatory diseases. LAG‐3 is transiently expressed on recently activated CD4+ and CD8+ T cells. We describe the engineering and first‐in‐human clinical study (NCT02195349) of GSK2831781 (an afucosylated humanized IgG1 monoclonal antibody enhanced with high affinity for Fc receptors and LAG‐3 and antibody‐dependent cellular cytotoxicity capabilities), which depletes LAG‐3 expressing cells. GSK2831781 was tested in a phase I/Ib, double‐blind, placebo‐controlled clinical study, which randomized 40 healthy participants (part A) and 27 patients with psoriasis (part B) to single doses of GSK2831781 (up to 0.15 and 5 mg/kg, respectively) or placebo. Adverse events were generally balanced across groups, with no safety or tolerability concern identified. LAG‐3+ cell depletion in peripheral blood was observed at doses ≥ 0.15 mg/kg and was dose‐dependent. In biopsies of psoriasis plaques, a reduction in mean group LAG‐3+ and CD3+ T‐cell counts was observed following treatment. Downregulation of proinflammatory genes (IL‐17A, IL‐17F, IFNγ, and S100A12) and upregulation of the epithelial barrier integrity gene, CDHR1, was observed with the 5 mg/kg dose of GSK2831781. Psoriasis disease activity improved up to day 43 at all GSK2831781 doses (0.5, 1.5, and 5 mg/kg) compared with placebo. Depletion of LAG‐3‐expressing activated T cells is a novel approach, and this first clinical study shows that GSK2831781 is pharmacologically active and provides encouraging early evidence of clinical effects in psoriasis, which warrants further investigation in T‐cell‐mediated inflammatory diseases.
- Published
- 2020
16. Anti‐IL‐7 receptor α monoclonal antibody (GSK2618960) in healthy subjects – a randomized, double‐blind, placebo‐controlled study
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Simon M. McHugh, Paul W. Thompson, Frank A Gray, Onajite Kousin-Ezewu, Jenny L Craigen, Disala Fernando, Alasdair Coles, Donggang Su, Joanne Ellis, Keguan Chen, Sara Santos Franco, Joao-Joaquim Oliveira, Kim Brown, Lea Fortunato, André van Maurik, Ann M. Schwartz, Sophie Gisbert, Jiansong Yang, Sara Brett, Bill Davis, Joseph Cheriyan, Andrew Want, and Jeffrey Price
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Adult ,Male ,drug safety ,Adolescent ,medicine.medical_treatment ,T cell ,T-Lymphocytes ,Pharmacology ,Antibodies, Monoclonal, Humanized ,030226 pharmacology & pharmacy ,Autoimmune Diseases ,immunology ,Interleukin-7 Receptor alpha Subunit ,Placebos ,03 medical and health sciences ,Young Adult ,0302 clinical medicine ,Pharmacokinetics ,Double-Blind Method ,medicine ,pharmacodynamics ,Humans ,Pharmacology (medical) ,030212 general & internal medicine ,Interleukin-7 receptor ,Receptor ,Infusions, Intravenous ,Aged ,biology ,business.industry ,Interleukin ,Original Articles ,Middle Aged ,Healthy Volunteers ,Cytokine ,medicine.anatomical_structure ,Pharmacodynamics ,biology.protein ,Original Article ,Female ,monoclonal antibodies ,Antibody ,business ,pharmacokinetics ,Half-Life - Abstract
Aim Interleukin (IL)-7 signalling modulates T cell activity and is implicated in numerous autoimmune diseases. The present study investigated the safety, pharmacokinetics, target engagement, pharmacodynamics and immunogenicity of GSK2618960, an IL-7 receptor-α subunit (CD127) monoclonal antibody. Methods A double-blind (sponsor-unblind) study of a single intravenous infusion of either GSK2618960 (0.6 mg kg-1 or 2.0 mg kg-1 ) or placebo was carried out in 18 healthy subjects over 24 weeks. Results GSK2618960 was well tolerated; there were no serious or significant adverse events. The observed half-life was 5 (±1) days (2.0 mg kg-1 ), with nonlinear pharmacokinetics. Full receptor occupancy (>95%) was observed until day 8 (0.6 mg kg-1 ) and day 22 (2.0 mg kg-1 ). Maximal inhibition of IL-7-mediated signal transducer and activator of transcription 5 (STAT5) phosphorylation was observed in 5/6 subjects until day 22 (2.0 mg kg-1 ). Mean circulating IL-7 and soluble receptor (CD127) levels were increased above baseline during days 2 and 15 (0.6 mg kg-1 ) and days 2 and 22 (2.0 mg kg-1 ). No meaningful changes were observed in absolute numbers or proportions of immune cell populations or inflammatory cytokine profiles (IL-6, tumour necrosis factor-α, interferon-γ, IL-2). Persistent antidrug antibodies (ADAs) were detected in 5/6 subjects administered a dose of 0.6 mg kg-1 (neutralizing in 2/6) and in 6/6 subjects administered 2.0 mg kg-1 (neutralizing in 5/6). Conclusion GSK2618960 was well tolerated and blocked IL-7 receptor signalling upon full target engagement. Although there was no discernible impact on peripheral T cell subsets in healthy subjects, GSK2618960 may effectively modulate the autoinflammatory activity of pathogenic T cells in diseased tissue. A relatively short half-life is likely the result of target-mediated rather than ADA-mediated clearance.
- Published
- 2018
17. Renewable methanol as a fuel for the shipping industry
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Joanne Ellis, Martin Svanberg, Ingvar Landälv, and Joakim Lundgren
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Renewable Energy, Sustainability and the Environment ,business.industry ,Natural resource economics ,020209 energy ,Supply chain ,Fossil fuel ,02 engineering and technology ,Renewable fuels ,Fuel oil ,Raw material ,Energy engineering ,Renewable energy ,0202 electrical engineering, electronic engineering, information engineering ,Environmental impact assessment ,business - Abstract
Maritime shipping is essential in global trade. The shipping industry uses fossil fuel with significant environmental impact as a result and a transition to renewable fuels may be part of the solution to reduce emissions. A fuel transition needs to be understood at all stages of the supply chain, ranging from feedstock to use in ships’ engines. The purpose of this paper is to do a synthesis of literature to provide an overview of main challenges and opportunities along potential supply chains of renewable methanol for maritime shipping, with a focus on bio-methanol. It is shown that renewable methanol is a technically viable option to reduce emissions from shipping and there are no major challenges with potential supply chains. Minor economic barriers that currently exist have the potential to be overcome with strengthening of environmental targets for shipping or if fuel oil prices revert to higher levels as seen previously.
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- 2018
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18. Interactive effects of climate and nutrient enrichment on patterns of herbivory by different feeding guilds in mangrove forests
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Joanne Ellis, Ruth Reef, Catherine Lovelock, Sally Keith, Ilka Feller, and Marilyn Ball
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0106 biological sciences ,Global and Planetary Change ,Ecology ,biology ,Agroforestry ,010604 marine biology & hydrobiology ,fungi ,Tropics ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,humanities ,Nutrient ,Habitat ,Avicennia marina ,Temperate climate ,Environmental science ,Ecosystem ,Mangrove ,Eutrophication ,Ecology, Evolution, Behavior and Systematics - Abstract
Aim: Global warming and eutrophication are major threats to coastal environments worldwide. As a result of differences between temperate and tropical ecosystems in nutrient availability, nitrogen (N): phosphorus (P) coupling and carbon retention, primary productivity and biotic interactions in the tropics are predicted to have stronger responses to increased nutrients than in temperate ecosystems. Habitats that occur across broad climatic ranges, such as mangrove forests, provide an opportunity to test this hypothesis by investigating the responses of herbivores to nutrient enrichment in temperate versus tropical latitudes on the same species.
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- 2017
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19. Contributors
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Riibeta Abeta, A. Ablan-Lagman, Mehdi Adjeroud, M.K. Ahmed, Simon Albert, Porfirio M. Aliño, Valérie Allain, Noura Al-Mansoori, Rohani Ambo-Rappe, Serge Andréfouët, Karibanang Tamuera Aram, Jérôme Aucan, S.O. Bandeira, Ratita Bebe, Luca G. Bellucci, Ranjeet Bhagooli, L. Bigot, N. Bodin, G. Braulik, Tom C.L. Bridge, Jon Brodie, Gilianne Brodie, Eric K. Brown, V. Burgener, John A. Burt, Reine W. Cabreira, Darren S. Cameron, Ma. Carmen, Susana Carvalho, B. Cauvin, Daniela M. Ceccarelli, P. Chabanet, E. Chassot, Loke M. Chou, Michele Christian, Michel R. Claereboudt, P. Cuet, Ario Damar, Corine David, Victor David, Terence P. Dawson, Jon C. Day, Natalie Degger, Gopal Dharani, Simon Donner, Larissa Dsikowitzky, Liqin Duan, P. Durville, Cyril Dutheil, Ben Eliason, Joanne Ellis, Michael J. Emslie, Taati Eria, Douglas Fenner, Sebastian C.A. Ferse, Alan M. Friedlander, Niv Froman, Robert Gillett, Silvia Giuliani, Beverly P.L. Goh, Alana Grech, Alistair Grinham, M. Gullström, Mark Hamann, Rosli Hashim, Scott F. Heron, Andrew S. Hoey, Mia O. Hoogenboom, Ibrahim Hoteit, Danwei Huang, Alec Hughes, Hari E. Irianto, Robert A. Irving, Tim C. Jennerjahn, Dilip Kumar Jha, Jheng-Jie Jiang, Stacy Jupiter, Deepeeka Kaullysing, Alan Kendrick, Somkiat Khokiattiwong, Ramalingam Kirubagaran, Fung-Chi Ko, M. Kochzius, Subbiah Krishnakumar, George Krokos, Benjamin Kürten, Ronal Lal, Ines D. Lange, Daniela LeBlanc, Chon-Lin Lee, Steven Lee, Wilfredo Y. Licuanan, Bing-Sian Lin, Lisa K. Lobel, Phillip S. Lobel, Epeli M. Loganimoce, Lionel Loubersac, Janice M. Lough, Edward Lovell, Shiau-Yun Lu, Martin C. Lukas, Perumal Madeswaran, Nochyil S. Magesh, Sangeeta Mangubhai, Joe McCarter, Christophe Menkes, Abigail M. Moore, Cherie Morris, Tiffany H. Morrison, T. Mulochau, O. Naim, Yashika Nand, Dang H. Nhon, J.B. Nicet, M Nicoll, Inga Nordhaus, Mark O’Brien, D.O. Obura, Kate Osborne, K Osuka, Claude E. Payri, Bernard Pelletier, Gilles Pestana, Thomas Pohlmann, Morgan S. Pratchett, Islay Purcell, Ingrid Qauqau, Mohammad A. Rahman, H.O. Ralison, Bindiya Rashni, Mark A. Read, Farran Mack Redfern, Majid Rezayi, M. Richmond, Randi Rotjan, Sarah Samadi, M.A. Samoilys, Seyedeh Belin Tavakoly Sany, S.K. Sarkar, K.K. Satpathy, Chloe Schauble, P. Scheren, Eike Schoenig, Jan Schwarzbauer, Charles Sheppard, Anne Sheppard, Simon Harding, Scott G. Smithers, Jinming Song, Guy M.W. Stevens, Karen Stone, Chih-Chieh Su, Ketut Sugama, Bambang Sumiono, Hugh P.A. Sweatman, Helen Sykes, Mohammad Tajfard, Koh S. Tan, Sarah Botaake Teetu, J-F. Ternon, E. Tessier, B. Thomassin, Tai C. Toh, Karenne Tun, Bronwyn Vaisey, Grace O. Vaughan, Nambali Valsalan Vinithkumar, Jane Waterhouse, Victor Wepener, J. Wickel, Barry Wilson, and Shaun Wilson
- Published
- 2019
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20. Analysis of accidents and incidents occurring during transport of packaged dangerous goods by sea
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Joanne Ellis
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Reino unido ,Engineering ,Injury control ,business.industry ,Accident prevention ,Public Health, Environmental and Occupational Health ,Poison control ,On board ,Forensic engineering ,Dangerous goods ,Safety, Risk, Reliability and Quality ,business ,Safety Research ,Maritime safety ,Royaume uni - Abstract
The release of packaged or containerized dangerous goods during transport can have serious consequences on board a ship. This study was focused on identifying factors contributing to these types of releases and on investigating the contribution of dangerous goods accidents to overall container ship accident rates. Records of dangerous goods releases from a US and a UK database for an 11-year period covering 1998-2008 were analyzed to identify and categorize main contributing factors. The majority of releases, estimated as 97% of the US events and 94% of the UK events, did not follow another primary accident type such as a collision. Faults that occurred during activities such as preparation of the goods for transport, packaging, stuffing containers, and loading the ship were main factors contributing to the release of the dangerous goods on board the ship. For container ship casualties occurring worldwide during the same period, 1998-2008, accidents involving packaged dangerous goods were estimated to account for 15% of all fatalities. Self-ignition or ignition of incorrectly declared dangerous goods was identified as a contributing factor for the fatal accidents. Ensuring that dangerous goods are correctly prepared and documented for marine transport is thus very important for preventing releases and improving on board safety.
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- 2011
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21. P449 Selective depletion of LAG3+ cells in T-cell-driven inflammation: a randomised, double-blind, placebo-controlled, FTIH phase I/Ib clinical trial
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Katherine Nevin, Karen Leavens, D Marks, Martin Coenen, J Stone, R Anselm, Anna Richards, Lia Liefaard, Stephen A. Hughes, N Srinivasan, Ruth M. Tarzi, Tim S. Schmidt, Rainard Fuhr, Nicolas Wisniacki, Muna Albayaty, Christine Barrett, Ken Edwards, T.G. Hopkins, S Tang, Joanne Ellis, and Caroline O. S. Savage
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medicine.medical_specialty ,LAG3 ,business.industry ,T cell ,Gastroenterology ,Inflammation ,General Medicine ,Placebo ,Double blind ,Clinical trial ,medicine.anatomical_structure ,Internal medicine ,Phase (matter) ,Medicine ,medicine.symptom ,business - Published
- 2019
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22. A systemic view of dispute causation
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Peter Davis, Peter E.D. Love, Sai On Cheung, and Joanne Ellis
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Construction management ,Value (ethics) ,business.industry ,Strategy and Management ,Epistemology ,System dynamics ,Construction industry ,Operations management ,Sociology ,Business and International Management ,Causation ,Project management ,business ,Causal model - Abstract
PurposeA considerable amount of research has been undertaken with regard to the dispute causation within construction project management. Research has eschewed identifying the interrelatedness of variables, which has blurred researchers understanding of dispute causation and lead to latent work practices being embedded within the contracting environment within which projects are procured. With this in mind, this paper attempts to identify the underlying dynamics influencing disputes through the use of causal modeling.Design/methodology/approachUsing the concept of system dynamics a series of causal models are developed from the literature to demonstrate the complexity associated with dispute causation.FindingsIt is revealed that project management, organization and people are the main sources of disputes. Causal models are constructed for each of these constructs and a series of strategies for avoiding disputations identified.Originality/valueThe research has demonstrated the inherent complexity associated with disputes and identified the interrelatedness of factors that can lead to their causation. It is suggested that further empirical research is required to determine the recurring latent conditions that contribute disputes. Once these conditions are examined then effective strategies for dispute avoidance can be identified and advancement toward improving the performance of construction projects made.
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- 2010
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23. Dispute causation: identification of pathogenic influences in construction
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Peter E.D. Love, Peter Davis, Sai On Cheung, and Joanne Ellis
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Common law ,Building and Construction ,Dispute mechanism ,Civil procedure ,General Business, Management and Accounting ,Alternative dispute resolution ,Law ,Architecture ,Mediation ,Arbitration ,Sociology ,Causation ,Civil and Structural Engineering ,Adjudication ,Law and economics - Abstract
PurposeWhile a considerable amount of knowledge has been accumulated about dispute causation, disputes continue to prevail and disharmonise the process of construction with considerable cost. This paper seeks to identify the underlying pathogens that clients and contractors perceive to contribute to disputes in construction projects. The identification of pathogens can provide an ameliorated understanding of the origin of disputes and therefore enable their prevention.Design/methodology/approachCase law and focus groups with a client and contracting organisation from Western Australia are used to determine the pathogens of disputes.FindingsAnalysis of the case law findings revealed that the underlying issues that were brought to litigation were to do with points of law, namely “civil procedure”. A significant number of disputes are thus settled using alternative dispute resolution methods such as adjudication, arbitration and mediation. For clients the underlying latent conditions that resulted in a dispute were due to the nature of the task being performed (e.g. failure to detect and correct errors) and those arising from people's deliberate practices (e.g. failure to oblige by contractual requirements). For the contractor focus group the circumstances arising from the situation or environment the project was operating in were identified as the main underlying latent condition for disputes (e.g. unforeseen scope changes).Research limitations/implicationsFocus groups are only undertaken with clients and contracting groups as they were identified as the main parties involved in dispute during the analysis of litigation cases within Western Australia. Input from consultants and subcontractors may provide a more balanced perspective as to the perceived causes and costs of disputes.Originality/valueThe research has been able to provide the initial building blocks for understanding the underlying pathogens contributing to disputes. However, more empirical research is required before conclusive findings can be made, particularly with regard to the influences on subcontractors.
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- 2010
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24. Evaluating the cost-effectiveness of a monitoring system for improved evacuation from passenger ships
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Erik Vanem and Joanne Ellis
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Engineering ,Decision support system ,Cost effectiveness ,business.industry ,Public Health, Environmental and Occupational Health ,Poison control ,ComputerApplications_COMPUTERSINOTHERSYSTEMS ,Monitoring system ,Track (rail transport) ,Occupational safety and health ,Transport engineering ,Risk analysis (business) ,Order (business) ,Safety, Risk, Reliability and Quality ,business ,Safety Research - Abstract
This paper presents an evaluation of the cost-effectiveness of a novel passenger monitoring system based on RFID technology for implementation onboard passenger ships. Such a system will be able to detect and keep track of passengers onboard the ship in emergency situations in order to provide crucial decision support to the officer in charge of evacuation. This will lead to increased safety and security on passenger ships. However, this increased safety will come at a certain cost. A methodology in line with Formal Safety Assessment is employed in order to assess the cost-effectiveness of the system, involving a thorough risk analysis.
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- 2010
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25. Undeclared dangerous goods — Risk implications for maritime transport
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Joanne Ellis
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Engineering ,Water transport ,business.industry ,Transportation ,Human Factors and Ergonomics ,Management, Monitoring, Policy and Law ,Safe handling ,Unit (housing) ,Marine safety ,Transport engineering ,Commerce ,Incident analysis ,Stowage ,Dangerous goods ,business ,Safety Research - Abstract
Dangerous goods that have not been correctly declared when offered for transport have contributed to some serious accidents at sea. Safe handling, stowage, and segregation of packaged dangerous goods cannot be carried out if there is no knowledge of the presence of dangerous goods inside the cargo transport unit (container and/or trailer), or if the goods have been incorrectly declared. Although undeclared dangerous goods are recognized as a safety issue in the shipping industry, there is little information available on the extent of the risk involved. The study described in this paper was carried out to investigate the extent and potential consequences of the maritime transport of undeclared dangerous goods. Dangerous goods incident and inspection reports and ship casualty data were reviewed and analysed. A generic qualitative model was constructed to illustrate contributing factors and potential consequences in incidents involving undeclared dangerous goods.
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- 2010
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26. A risk model for the operation of container vessels
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Joanne Ellis, Uwe Langbecker, Björn Forsman, Susann Gehl, Kurt Riedel, and Pierre C. Sames
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Fault tree analysis ,Engineering ,Operations research ,Probabilistic risk assessment ,business.industry ,Event (computing) ,Transportation ,Human Factors and Ergonomics ,Management, Monitoring, Policy and Law ,Risk model ,Tree (data structure) ,Order (business) ,Container (abstract data type) ,Risk assessment ,business ,Safety Research - Abstract
Commercial shipping of containerized goods involves certain risks for human safety and environment. In order to actively manage these risks, they must be identified, analyzed, modeled, and quantified. This requires a systematical analysis of design and operation of container vessels. Within the EU-funded research project SAFEDOR, a Formal Safety Assessment has been applied to establish the current safety level of generic container ships and to identify potential cost-effective risk control options. This paper describes a structured approach to develop the underlying high-level risk model. It is structured as risk contribution tree consisting of a series of fault trees and event trees for the major accident categories. Statistical analysis of casualty data is used to estimate the probability of occurrence. Finally, the summation overall individual risk contributions yields the current risk pro file for the operation of container vessels is presented as FN-curve.
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- 2008
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27. OFFSHORE HYDROCARBON AND SYNTHETIC HYDROCARBON SPILLS IN EASTERN CANADA: THE ISSUE OF FOLLOW-UP AND EXPERIENCE
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GAIL S. FRASER and JOANNE ELLIS
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Canadian Environmental Assessment Act, Canada-Newfoundland Atlantic Accord Implementation Act, Canada-Nova Scotia Offshore Petroleum Resources Accord Implementations Act, oil pollution, Northwest Atlantic - Abstract
The Environmental Assessment (EA) process should involve the generation of testable predictions generated using clearly stated methods and followed by the collection of environmental monitoring data. Follow-up programs should aim to determine the accuracy of the initial predictions. We examined the follow-up process for six oil and gas extraction projects in eastern Canada with respect to assessing batch spill (
- Published
- 2008
28. A Video Analysis of Use of the New 'Concussion Interchange Rule' in the National Rugby League
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Andrew Gardner, Tammie Moore, Christopher R Levi, Peter Stanwell, Grant L. Iverson, and Joanne Ellis
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medicine.medical_specialty ,Football ,Video Recording ,Poison control ,Physical Therapy, Sports Therapy and Rehabilitation ,League ,Suicide prevention ,Occupational safety and health ,03 medical and health sciences ,0302 clinical medicine ,Physical medicine and rehabilitation ,Injury prevention ,Concussion ,medicine ,Humans ,Orthopedics and Sports Medicine ,Brain Concussion ,business.industry ,Incidence ,Australia ,030229 sport sciences ,medicine.disease ,Gait ,Athletic Injuries ,business ,030217 neurology & neurosurgery - Abstract
The National Rugby League (NRL) in Australia introduced a new 'concussion interchange rule' (CIR) in 2014, whereby a player suspected of having sustained a concussion can be removed from play, and assessed, without an interchange being tallied against the player's team. We conducted a video analysis, describing player and injury characteristics, situational factors, concussion signs, and return to play for each "CIR" event for the 2014 season. There were 167 reported uses of the CIR. Apparent loss of consciousness/unresponsiveness was observed in 32% of cases, loss of muscle tone in 54%, clutching the head in 70%, unsteadiness of gait in 66%, and a vacant stare in 66%. More than half of the players who were removed under the CIR returned to play later in the same match (57%). Most incidences occurred from a hit up (62%) and occurred during a tackle where the initial contact was with the upper body (80%). The new concussion interchange rule has been used frequently during the first season of its implementation. In many cases, there appeared to be video evidence of injury but the athlete was cleared to return to play. More research is needed on the usefulness of video review for identifying signs of concussive injury.
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- 2016
29. Laser desorption/ionization mass spectrometry on porous silicon for metabolome analyses: influence of surface oxidation
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Michael W. Anderson, Royston Goodacre, Tudor Jenkins, Seetharaman Vaidyanathan, Chin Chong, Joanne Ellis, and Daniel Garfield Jones
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Silicon ,Analyte ,Surface Properties ,Chemistry ,Organic Chemistry ,Analytical chemistry ,Ion suppression in liquid chromatography–mass spectrometry ,Fast atom bombardment ,Thermal ionization mass spectrometry ,Spectrum Analysis, Raman ,Mass spectrometry ,Soft laser desorption ,Analytical Chemistry ,Adduct ,Metabolism ,Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization ,Desorption ,Spectroscopy, Fourier Transform Infrared ,Feasibility Studies ,Protons ,Oxidation-Reduction ,Porosity ,Spectroscopy - Abstract
Laser desorption/ionization mass spectrometry (LDI-MS) on porous silicon is a promising analytical strategy for the rapid detection of metabolites in biological matrices. We show that both oxidized and unoxidized porous silicon surfaces are useful in detecting protonated/deprotonated molecules from compounds when analyzed in mixtures. We demonstrate the feasibility of using this technique for the simultaneous detection of multiple analytes using a synthetic cocktail of 30 compounds commonly associated with prokaryotic and eukaryotic primary metabolism. The predominantly detected species were the protonated molecules or their sodium/potassium adducts in the positive-ion mode and the deprotonated molecules in the negative-ion mode, as opposed to fragments or other adducts. Surface oxidation appears to influence mass spectral responses; in particular, in the mixture we studied, the signal intensities of the hydrophobic amino acids were noticeably reduced. We show that whilst quantitative changes in individual analytes can be detected, ion suppression effects interfere when analyte levels are altered significantly. However, the response of most analytes was relatively unaffected by changes in the concentration of one of the analytes, so long as it was not allowed to dominate the mixture, which may limit the dynamic range of this approach. The differences in the response of the analytes when analyzed in mixtures could not be accounted for by considering their gas-phase and aqueous basicities alone. The implications of these findings in using the technique for metabolome analyses are discussed.
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- 2007
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30. ToF-SIMS studies of Bacillus using multivariate analysis with possible identification and taxonomic applications
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Alex Henderson, Royston Goodacre, John S. Fletcher, Nicholas P. Lockyer, C. E. Thompson, Joanne Ellis, and John C. Vickerman
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Bacillus species ,Multivariate analysis ,Chromatography ,General Physics and Astronomy ,Surfaces and Interfaces ,General Chemistry ,Computational biology ,Biology ,Condensed Matter Physics ,Surfaces, Coatings and Films ,Hierarchical clustering ,Rapid identification ,Discriminant function analysis ,Principal component analysis ,Surface chemical - Abstract
In this paper we discuss the application of ToF-SIMS with an Au3 + primary ion beam, combined with principal components analysis (PCA) and discriminant function analysis (DFA) for the identification of individual strains of two Bacillus species. The ToF-SIMS PC-DFA methodology is capable of distinguishing bacteria at the strain levelbased onanalysis of surface chemical species. By classifying the data using hierarchical cluster analysis (HCA) we are able to show quantitative separation of species and of these strains. This has taxonomic implications in the areas of rapid identification of pathogenic microbes isolated from the clinic, food and environment. # 2006 Published by Elsevier B.V.
- Published
- 2006
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31. Differentiation of Peats Used in the Preparation of Malt for Scotch Whisky Production Using Fourier Transform Infrared Spectroscopy
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Ken Reid, Joanne Ellis, Barry Harrison, David Broadhurst, Royston Goodacre, and Fergus G. Priest
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Peat ,Chemistry ,Organoleptic ,Mineralogy ,symbols.namesake ,Fourier transform ,food ,Principal component analysis ,symbols ,Screening method ,Scotch whisky ,Fourier transform infrared spectroscopy ,Spectroscopy ,food.beverage ,Food Science - Abstract
It is not known if peats derived from different areas of Scotland have distinctive chemical constituents that could impact on malt whisky in discernible organoleptic ways. Fourier transform-infrared (FT-IR) spectroscopy was used as a high throughput screening method to investigate discrimination of a large number of peat samples from six different geographical origins around Scotland. The data were analysed statistically (using principal component-discriminant function analysis) and the results showed a difference between peat samples from different geographical origins. Therefore, we have shown that FT-IR spectroscopy provides a quick and simple method for differentiating peat types.
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- 2006
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32. A laser desorption ionisation mass spectrometry approach for high throughput metabolomics
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Tudor Jenkins, Warwick B. Dunn, Nicola Burton, Royston Goodacre, Seetharaman Vaidyanathan, Daniel Garfield Jones, Joanne Ellis, Stephen G. Oliver, Andrew Hayes, Douglas B. Kell, and David Broadhurst
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Analyte ,Metabolomics ,Chromatography ,Chemistry ,Endocrinology, Diabetes and Metabolism ,Desorption ,Clinical Biochemistry ,Mutant ,Biomarker discovery ,Mass spectrometry ,Biochemistry ,Functional genomics ,Yeast - Abstract
The importance of metabolomic data in functional genomic investigations is increasingly becoming evident, as is its utility in novel biomarker discovery. We demonstrate a simple approach to the screening of metabolic information that we believe will be valuable in generating metabolomic data. Laser desorption ionisation mass spectrometry on porous silicon was effective in detecting 22 of 30 metabolites in a mixture in the negative-ion mode and 19 of 30 metabolites in the positive-ion mode, without the employment of any prior analyte separation steps. Overall, 26 of the 30 metabolites could be covered between the positive and negative-ion modes. Although the response for the metabolites at a given concentration differed, it was possible to generate direct quantitative information for a given analyte in the mixture. This technique was subsequently used to generate metabolic footprints from cell-free supernatants and, when combined with chemometric analysis, enabled us to discriminate haploid yeast single-gene deletants (mutants). In particular, the metabolic footprint of a deletion mutant in a gene encoding a transcriptional activator (Gln3p) showed increased levels of peaks, including one corresponding to glutamate, compared to the other mutants and the wild-type strain tested, enabling its discrimination based on metabolic information.
- Published
- 2005
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33. Identification of Novel Genes in Arabidopsis Involved in Secondary Cell Wall Formation Using Expression Profiling and Reverse Genetics
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David M. Brown, Simon R. Turner, Royston Goodacre, Joanne Ellis, and Leo A. H. Zeef
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Genetics ,Plant Stems ,Microarray analysis techniques ,Arabidopsis Proteins ,Gene Expression Profiling ,Arabidopsis ,Cell Biology ,Plant Science ,Computational biology ,Biology ,Genes, Plant ,Reverse genetics ,Introns ,Gene expression profiling ,Cell Wall ,Glucosyltransferases ,Cellulose synthase complex ,Gene family ,Secondary cell wall ,Gene ,3' Untranslated Regions ,Research Articles ,Genetic screen - Abstract
Forward genetic screens have led to the isolation of several genes involved in secondary cell wall formation. A variety of evidence, however, suggests that the list of genes identified is not exhaustive. To address this problem, microarray data have been generated from tissue undergoing secondary cell wall formation and used to identify genes that exhibit a similar expression pattern to the secondary cell wall-specific cellulose synthase genes IRREGULAR XYLEM1 (IRX1) and IRX3. Cross-referencing this analysis with publicly available microarray data resulted in the selection of 16 genes for reverse genetic analysis. Lines containing an insertion in seven of these genes exhibited a clear irx phenotype characteristic of a secondary cell wall defect. Only one line, containing an insertion in a member of the COBRA gene family, exhibited a large decrease in cellulose content. Five of the genes identified as being essential for secondary cell wall biosynthesis have not been previously characterized. These genes are likely to define entirely novel processes in secondary cell wall formation and illustrate the success of combining expression data with reverse genetics to address gene function.
- Published
- 2005
34. Telephone assessment. Lines of inquiry
- Author
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Joanne, Ellis
- Subjects
Cohort Studies ,Admitting Department, Hospital ,Ambulatory Surgical Procedures ,Diagnostic Tests, Routine ,Hospitals, Public ,Patient Satisfaction ,Humans ,Pilot Projects ,Information Centers ,State Medicine ,United Kingdom ,Telephone - Published
- 2002
35. Investigating the application of generalized additive models to discrete-time event history analysis for birth events
- Author
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Joanne Ellison, Ann Berrington, Erengul Dodd, and Jonathan J. Forster
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discrete-time event history ,educational differentials ,fertility ,general additive models ,parity progression ,period fertility ,postponement of childbearing ,retrospective histories ,time since last birth ,united kingdom ,Demography. Population. Vital events ,HB848-3697 - Abstract
Background: Discrete-time event history analysis (EHA) is the standard approach taken when modelling fertility histories collected in surveys, where the date of birth is often recorded imprecisely. This method is commonly used to investigate the factors associated with the time to a first or subsequent conception or birth. Although there is an emerging trend towards the smooth incorporation of continuous covariates in the broader literature, this is yet to be formally embraced in the context of birth events. Objective: We investigate the formal application of smooth methods implemented via generalized additive models (GAMs) to the analysis of fertility histories. We also determine whether and where GAMs offer a practical improvement over existing approaches. Methods: We fit parity-specific logistic GAMs to data from the UK Household Longitudinal Study, learning about the effects of age, period, time since last birth, educational qualification, and country of birth. First, we select the most parsimonious GAMs that fit the data sufficiently well. Then we compare them with corresponding models that use the existing methods of categorical, polynomial, and piecewise linear spline representations in terms of fit, complexity, and substantive insights gained. Results: We find that smooth terms can offer considerable improvements in precision and efficiency, particularly for highly non-linear effects and interactions between continuous variables. Their flexibility enables the detection of important features that are missed or estimated imprecisely by comparator methods. Contribution: Our findings suggest that GAMs are a useful addition to the demographer's toolkit. They are highly relevant for motivating future methodological developments in EHA, both for birth events and more generally.
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- 2022
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36. Child sexual abuse: its impact and treatment
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Elizabeth Williams, Joanne Ellis, Chrissoula Stavrakaki, and B. Vargo
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Child abuse ,business.industry ,Poison control ,Human factors and ergonomics ,Child Abuse, Sexual ,Child Behavior Disorders ,Child Reactive Disorders ,medicine.disease ,Suicide prevention ,Psychotherapy ,Psychiatry and Mental health ,Interpersonal relationship ,Sexual abuse ,Child sexual abuse ,Injury prevention ,Adaptation, Psychological ,medicine ,Humans ,Female ,Interpersonal Relations ,Medical emergency ,Affective Symptoms ,business ,Child ,Clinical psychology - Abstract
Sexual victimization of children is a relatively new area of enquiry and initial studies have been directed towards identification and etiology. It is only recently that treatment issues are beginning to be addressed. This paper first reviews the literature on the direct and indirect effects of sexual abuse on the child victim, and outlines five key issues in treatment. The major foci in treatment to date are described and a number of existing models, which have been devised to address these treatment issues, are briefly summarized.
- Published
- 1988
37. A double-masked, placebo-controlled trial of acyclovir cream in immunocompetent patients with herpes zoster
- Author
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E.M. Dunbar, Pauline Dowd, B.K. Mandal, M E Ellis, and Joanne Ellis
- Subjects
Microbiology (medical) ,Male ,medicine.medical_specialty ,Erythema ,viruses ,Placebo-controlled study ,Acyclovir ,Placebo ,Herpes Zoster ,law.invention ,Ointments ,Random Allocation ,Randomized controlled trial ,Double-Blind Method ,law ,medicine ,Humans ,Aciclovir ,Aged ,Aged, 80 and over ,Clinical Trials as Topic ,business.industry ,Incidence (epidemiology) ,virus diseases ,Middle Aged ,medicine.disease ,Rash ,Dermatology ,Surgery ,Infectious Diseases ,Neuralgia ,Female ,medicine.symptom ,business ,medicine.drug - Abstract
Sixty-four patients with herpes zoster were entered into a randomised double-masked, placebo-controlled trial of 5% acyclovir cream applied five times daily for 5 days. Of these patients, 56 were included in the final analysis (26 acyclovir, 30 placebo). Significant and objective differences in either progression of the rash, severity of acute pain or incidence of post-herpetic neuralgia were not observed. Although significantly more rashes involuted in the acyclovir group, this isolated finding cannot be explained. Twenty-two patients (12 acyclovir, 10 placebo) experienced erythema or desquamation or both during treatment with the cream. The similar incidence of skin reactions in both groups suggests that they were related to the cream base rather than the acyclovir.
- Published
- 1988
38. Fishing disturbance and marine biodiversity: The role of habitat structure in simple soft-sediment systems
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Thrush, S. F., Hewitt, J. E., Funnell, G. A., Cummings, V. J., Joanne Ellis, Schultz, D., Talley, D., and Norkko, A.
39. Interferon-α-mediated therapeutic resistance in early rheumatoid arthritis implicates epigenetic reprogramming
- Author
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Cooles, Faye, Tarn, Jessica, Lendrem, Dennis, Naamane, Najib, Lin, Chung Ma, Millar, Ben, Maney, Nicola, Anderson, Amy, Thalayasingam, Nishanthi, Diboll, Julie, Bondet, Vincent, Duffy, Darragh, Barnes, Michael, Smith, Graham, Ng, Sandra, Watson, David, Henkin, Rafael, Cope, Andrew, Reynard, Louise, Pratt, Arthur, Isaacs, John, Newcastle University [Newcastle], Immunobiologie des Cellules dendritiques, Institut Pasteur [Paris] (IP)-Institut National de la Santé et de la Recherche Médicale (INSERM), William Harvey Research Institute, Barts and the London Medical School, University College of London [London] (UCL), King‘s College London, RA-MAP Consortium: Adwoa Hughes-Morley, Alexandra Walker, Alexandru Cuza, Amaya Gallagher-Syed, Amy Anderson, Andrea Haynes, Andrew Filer, Andrew Long, Andrew P Cope, Angela Parke, Anthony Rowe, Arnaud Didierlaurent, Ashley Gilmour, Athula Herath, Ayako Wakatsuki, Pedersen Aysin, Tulunay Virlan, Ben Allen, Benjamin A Fisher, Blerina Kola, Bohdan Harvey, Brian Tom, Carl S Goodyear, Carolyn Cuff, Catharien Hilkens, Catharina Lindholm, Catherine T Mela, Christopher D Buckley, Chris Larminie, Chris Marshall, Christopher John, Christopher M Mela, Claudio Carini, Costantino Pitzalis, Coziana Ciurtin, Dan Baker, Daniel Ziemek, Daniela Dastros-Pitei, Dao Nguyen, David L Scott, David S Watson, Deborah Symmons, Dennis Lendrem, Denny Verbeeck, Desmond Padhji, Donna Finch, Duncan Porter, Emma Vernon, Faye Cooles, Feng Hong, Fiona Clarke, Fiona Stirling, Fowzia Ibrahim, Frances Humby, Francisco Bonachela Capdevila, Frederic Geissmann, Frederique Ponchel, Gemma Molyneux, Gemma Simpson, Georgina Thorborn, Gerry Parker, Gioia Altobelli, Graham R Smith, Hannah Edwards, Hannah Tipney, Hans-Dieter Zucht, Hayley Noble, Heidi Lempp, Humayara AliIain B McInnes, Ian C Scott, Ian N BruceIona Donnelly, Ivana Vranic, James A Butler, James Galloway, Jamie C Sergeant, Jane Worthington, Jehan El-Jawhari, Jessica Tarn, Joanne Ellis, John Casement, John Isaacs, Julie Diboll, Karim Raza, Katriona Goldmann, Kirsty Hicks, Liliane Fossati-Jimack, Lucy Rowell, Marc Levesque, Mark C Coles, Mark Coles, Mark Curran, Martin Hodge, Martin Jenkins, Mateusz Maciejewski, Matt Page, Matthew A Sleeman, Matthew J Loza, Maya Buch, Meilien Ho, Michael Binks, Michael F McDermott, Michael Macoritto, Michael R Barnes, Michael R Ehrenstein, Michele Bombardieri, Myles Lewis, Neil Gozzard, Neil Payne, Neil Ward, Nina Joseph, Paul Emery, Peter C Taylor, Peter Schulz-Knappe, Petra Budde, Philip Jones, Philip Stocks, Rachel Harry, Rafael Henkin, Ravi Rao, Ray Harris, Rekha Parmar, Ruth Toward, Sally Hollis, Samana Schwank, Samantha Lipsky, Samiul Hasan, Sandra Martins, Sandra Ng, Sarah Brockbank, Sarah Keidel, Scott Jelinsky, Sharmila Rana, Simon Read, Stephen Kelly, Stephen Wright, Steve P Young, Sukru Kaymakcalan, Susan Talbot, Suzanne Mm Verstappen, Tomi Lazarov, Tony Sabin, Valerie Ludbrook, Vernon Farewell, Wayne Tsuji, Wing Wu, Wivine Burny, Yujie Zhong, Zheng Liu, Zhilong Jia, and Vougny, Marie-Christine
- Subjects
[SDV.MHEP.RSOA] Life Sciences [q-bio]/Human health and pathology/Rhumatology and musculoskeletal system ,antirheumatic agents ,Rheumatology ,[SDV.MHEP.RSOA]Life Sciences [q-bio]/Human health and pathology/Rhumatology and musculoskeletal system ,[SDV.IMM.IA]Life Sciences [q-bio]/Immunology/Adaptive immunology ,inflammation ,[SDV.IMM.IA] Life Sciences [q-bio]/Immunology/Adaptive immunology ,immune system diseases ,Immunology ,arthritis, rheumatoid ,Immunology and Allergy ,General Biochemistry, Genetics and Molecular Biology - Abstract
ObjectivesAn interferon (IFN) gene signature (IGS) is present in approximately 50% of early, treatment naive rheumatoid arthritis (eRA) patients where it has been shown to negatively impact initial response to treatment. We wished to validate this effect and explore potential mechanisms of action.MethodsIn a multicentre inception cohort of eRA patients (n=191), we examined the whole blood IGS (MxA, IFI44L, OAS1, IFI6, ISG15) with reference to circulating IFN proteins, clinical outcomes and epigenetic influences on circulating CD19+ B and CD4+ T lymphocytes.ResultsWe reproduced our previous findings demonstrating a raised baseline IGS. We additionally showed, for the first time, that the IGS in eRA reflects circulating IFN-α protein. Paired longitudinal analysis demonstrated a significant reduction between baseline and 6-month IGS and IFN-α levels (pPARP9, STAT1,andEPSTI1, associated with baseline IGS/IFNα levels. Differentially methylated CPG sites implicated altered transcription factor binding in B cells (GATA3, ETSI, NFATC2, EZH2) and T cells (p300, HIF1α).ConclusionsOur data suggest that, in eRA, IFN-α can cause a sustained, epigenetically mediated, pathogenic increase in lymphocyte activation and proliferation, and that the IGS is, therefore, a robust prognostic biomarker. Its persistent harmful effects provide a rationale for the initial therapeutic targeting of IFN-α in selected patients with eRA.
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- 2022
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- View/download PDF
40. Group elicitations yield more consistent, yet more uncertain experts in understanding risks to ecosystem services in New Zealand bays.
- Author
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Gerald G Singh, Jim Sinner, Joanne Ellis, Milind Kandlikar, Benjamin S Halpern, Terre Satterfield, and Kai Chan
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