Phosphatidylinositol-specific phospholipase C (PI-PLC) is a virulence factor produced and secreted by many Gram positive bacteria (1). When secreted by extracellular pathogens (e.g., Bacillus and Staphylococcus strains (2–5) this enzyme catalyzes the cleavage of glycan-phosphatidylinositol (GPI) anchored proteins. PI-PLC removal of the protective GPI-anchored proteins on the exterior surface of mammalian cells allows cellular damage to occur, and the diacylglycerol, translocating across the bilayer (6), can interfere with cellular signaling processes (7). Phosphatidylinositol molecules are also good substrates for this enzyme and provide an easier system to explore mechanistic details of these enzymes (1). PI-PLC cleaves its substrate via an intramolecular phosphotransferase reaction on the PI moiety to form a cyclic inositol phosphate molecule and diacylglycerol (8). Subsequent hydrolysis of the cyclic phosphodiester produces inositol 1-phosphate if PI is the substrate (9, 10). The PI-PLC from S. aureus is unusual in exhibiting significant activity towards PI at acidic pH (4) – a property that may contribute to the virulence of the organism, which is often in an acidic milieu (11). Crystal structures of the PI-PLC enzymes from Bacillus species (12, 13) and Listeria monocytogenes (14), an intracellular pathogen, show very similar distorted TIM barrels with an active site close to the barrel rim. Each has a short helix at the rim that contains at least one lysine, important for binding to negatively charged interfaces, and a tryptophan that, in the case of the Bacillus PI-PLC, has been proposed to insert into target membranes (15–17). Another key structural feature is a rim loop near the active site that contains one large hydrophobic residue (either a tryptophan or phenylalanine) amid many small flexible residues. This surface-exposed hydrophobic residue is also thought to aid in anchoring the protein to membranes (15, 16). Several of the bacterial PI-PLC enzymes exhibit kinetic activation by non-substrate phospholipids. Specifically, inclusion of PC in vesicles containing PI lead to large increases in the specific activity of these secreted PI-PLC enzymes (9, 18, 19). The detailed mechanism for PC activation is not the same for the different enzymes. B. thuringiensis PI-PLC has a discrete site for PC binding (20), while the L. monocytogenes PI-PLC requires PC to dilute cationic enzyme/anionic lipid aggregates that trap the enzyme in a nonproductive state (19). The PI-PLC from S. aureus can also exhibit a significant increase in specific activity towards PI in vesicles containing PC (vide infra). We have solved the structure of S. aureus PI-PLC strain FPR3757 at two different pH values: (i) pH 4.6, where the enzyme shows low activity (but significantly higher than other bacterial PI-PLC enzymes), and (ii) pH 7.5, where it is very active towards PI/PC (but not pure PI) vesicles. A large conformational change in the rim mobile loop between the acidic and basic pH structures depends on a titratable π-histidine cation interaction. π-Cation interactions are well known in proteins, however these interactions commonly exist in protein-protein interfaces, enzyme-drug interactions, helix stabilization and protein-DNA interactions (21–23). π-Cation complexes with protonated histidine as the cation are also known (24). Most of these interactions result in subtle structural changes; typically they mediate ligand binding or helix stabilization (25, 26). However, a recent structure of the transferrin receptor showed a large change in structure in the dimer interface region upon transferrin binding whereby a protonated surface histidine flipped into the protein to engage in π-stacking with a phenylalanine and tyrosine (27). Observation of the titratable intramolecular π-cation interaction in S. aureus PI-PLC suggests higher activity at acidic pH is connected with easier release of water-soluble product inositol 1,2-(cyclic)phosphate (cIP). This structural feature also provides an explanation for how PC may activate this bacterial PI-PLC. The presence of that zwitterionic phospholipid in a substrate-containing interface provides cationic choline moieties that can compete with cationic His258 for interactions with the π system of Phe249 allowing the latter to partition into membranes. The higher activity once PC is added indicates that this membrane conformation must differ from the one where only PI is present.