11 results on '"Jingzi Xu"'
Search Results
2. Khoe-San Genomes Reveal Unique Variation and Confirm the Deepest Population Divergence in Homo sapiens
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Agnès E. Sjöstrand, Thijessen Naidoo, Himla Soodyall, Torsten Günther, Carina M. Schlebusch, Marlize Lombard, Michael De Jongh, Jingzi Xu, Mário Vicente, Gwenna Breton, Mattias Jakobsson, Lucie M. Gattepaille, Per Sjödin, Douglas G. Scofield, Nina Hollfelder, and Helena Malmström
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Human Migration ,Population ,Population structure ,Biology ,AcademicSubjects/SCI01180 ,Genome ,Khoe-San ,Divergence ,03 medical and health sciences ,Genetics ,Humans ,Indigenous Peoples ,education ,Molecular Biology ,Africa South of the Sahara ,Discoveries ,Ecology, Evolution, Behavior and Systematics ,Medicinsk genetik ,030304 developmental biology ,Population Density ,0303 health sciences ,education.field_of_study ,Genome, Human ,030305 genetics & heredity ,AcademicSubjects/SCI01130 ,population structure ,Biological Evolution ,Phylogeography ,Variation (linguistics) ,southern Africa ,Homo sapiens ,Evolutionary biology ,Medical Genetics - Abstract
The southern African indigenous Khoe-San populations harbor the most divergent lineages of all living peoples. Exploring their genomes is key to understanding deep human history. We sequenced 25 full genomes from five Khoe-San populations, revealing many novel variants, that 25% of variants are unique to the Khoe-San, and that the Khoe-San group harbors the greatest level of diversity across the globe. In line with previous studies, we found several gene regions with extreme values in genome-wide scans for selection, potentially caused by natural selection in the lineage leading to Homo sapiens and more recent in time. These gene regions included immunity-, sperm-, brain-, diet-, and muscle-related genes. When accounting for recent admixture, all Khoe-San groups display genetic diversity approaching the levels in other African groups and a reduction in effective population size starting around 100,000 years ago. Hence, all human groups show a reduction in effective population size commencing around the time of the Out-of-Africa migrations, which coincides with changes in the paleoclimate records, changes that potentially impacted all humans at the time.
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- 2020
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3. Corrigendum to ‘Balasubramide derivative 3C modulates microglia activation via CaMKKβ-dependent AMPK/PGC-1α pathway in neuroinflammatory conditions’ [Brain Behav. Immun. 67 (2018) 101–117]
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Jingzi Xu, Yunjie Wang, Junru Mi, Hansen Lin, Zhengyu Cao, Tao Pang, Juan M. Saavedra, Haojie Wang, Wenchen Ruan, and Zhang Luyong
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Behavioral Neuroscience ,chemistry.chemical_compound ,medicine.anatomical_structure ,Microglia ,chemistry ,Endocrine and Autonomic Systems ,Immunology ,medicine ,AMPK ,Balasubramide ,Derivative (chemistry) ,Cell biology - Published
- 2020
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4. Ethical Reflections on the Equity of the Current Basic Health Insurance System Reform in China: A Case Study in Hunan Province
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Tianyu Zhang, Yonghui Ma, Jingzi Xu, and Junxiang Liu
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Rural Population ,China ,Health (social science) ,Inequality ,media_common.quotation_subject ,Procedural justice ,Health Services Accessibility ,03 medical and health sciences ,Health insurance system ,0302 clinical medicine ,Health care ,030212 general & internal medicine ,Healthcare Disparities ,Socioeconomic status ,media_common ,Insurance, Health ,Equity (economics) ,Public economics ,business.industry ,030503 health policy & services ,Health Policy ,Equal opportunity ,Issues, ethics and legal aspects ,Health Care Reform ,0305 other medical science ,business - Abstract
China’s current basic health insurance reform aims at promoting equity in the economic accessibility of health services for all citizens, to better ensure healthcare justice. Therefore, it is important to assess equity not only from a socioeconomic perspective but also from an ethical angle. This article investigates the basic health insurance system of Hunan Province in China by focusing on insurance types as well as their classification standards, mechanisms, and utilization according to local policy documents and data. This study demonstrates the reforming achievements and the inequity of institutional design according to two interrelated dimensions: equal opportunity of access to healthcare insurance and reducing inequality in insurance benefits. The article concludes that to achieve opportunity equity and outcome fairness, the reform should focus on designing the system to promote equity with respect to procedures and rules and to be more attentive to the interests of vulnerable groups and especially to rural residents.
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- 2018
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5. Balasubramide derivative 3C modulates microglia activation via CaMKKβ-dependent AMPK/PGC-1α pathway in neuroinflammatory conditions
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Wenchen Ruan, Hansen Lin, Juan M. Saavedra, Yunjie Wang, Tao Pang, Haojie Wang, Jingzi Xu, Zhang Luyong, Junru Mi, and Zhengyu Cao
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Male ,0301 basic medicine ,p38 mitogen-activated protein kinases ,Immunology ,Calcium-Calmodulin-Dependent Protein Kinase Kinase ,AMP-Activated Protein Kinases ,Neuroprotection ,Cell Line ,Proinflammatory cytokine ,Rats, Sprague-Dawley ,03 medical and health sciences ,Behavioral Neuroscience ,0302 clinical medicine ,medicine ,Animals ,Protein kinase A ,Neuroinflammation ,Microglia ,Depression ,Endocrine and Autonomic Systems ,business.industry ,Brain ,AMPK ,Infarction, Middle Cerebral Artery ,Peroxisome Proliferator-Activated Receptor Gamma Coactivator 1-alpha ,Cell biology ,Mice, Inbred C57BL ,Neuroprotective Agents ,030104 developmental biology ,medicine.anatomical_structure ,Encephalitis ,Inflammation Mediators ,Signal transduction ,business ,Heterocyclic Compounds, 3-Ring ,030217 neurology & neurosurgery ,Signal Transduction - Abstract
Neuroinflammation plays a vital role in the pathological process of cerebral ischemic stroke, but currently there is no effective treatment. After ischemia, microglia-produced proinflammatory mediator expression contributes to the aggravation of neuroinflammation, while anti-inflammatory activation of microglia develops an anti-neuroinflammatory effect via secretion of anti-inflammatory factor. Promoting the anti-inflammatory activation of microglia might be an effective treatment of stroke. Previously, we discovered one derivative of the natural product (+)-balasubramide, compound 3C, that exhibits a remarkably anti-neuroinflammatory effect in vitro with unknown mechanisms. Thus in this study, we aimed to clarify its molecular mechanisms and determine whether compound 3C has a neuroprotective effect after ischemia via regulation on microglial inflammation. We found that compound 3C promoted the anti-inflammatory mediator expression and reduced the proinflammatory mediator expression in LPS-stimulated BV2 cells and mouse primary microglia cells, which were reversed by AMP-activated protein kinase (AMPK) inhibition or AMPK upstream calmodulin-dependent protein kinase kinase beta (CaMKKβ) inhibition. Compound 3C also prevented LPS-stimulated JNK activation and enhanced PGC-1α activation in microglia, which was attenuated by AMPK inhibition. Additionally, compound 3C ameliorated depressive behaviors in LPS-induced neuroinflammatory mice by promoting the anti-inflammatory activation of microglia. Furthermore, we found that compound 3C markedly reduced brain infarct volume, improved the neurological deficit in rats with ischemia and reduced the activated microglia/macrophage cells in the ischemic area, which concomitantly enhanced the anti-inflammatory mediator expression. A mechanistic study showed that the compound 3C-mediated activation of CaMKKβ, AMPK and PGC-1α is involved in the anti-neuroinflammatory and neuroprotective effects of 3C in the brain of LPS-treated mice and ischemic rats. Taken together, our results show that compound 3C could suppress neuroinflammation in vitro and in vivo by modulating microglial activation state through the CaMKKβ-dependent AMPK/PGC-1α signaling pathway, and maybe further be developed as a promising new drug candidate for the treatment of brain disorders such as stroke associated with brain inflammation.
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- 2018
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6. Enantiomeric resolution, thermodynamic parameters, and modeling of clausenamidone and neoclausenamidone on polysaccharide-based chiral stationary phases
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Xuna Luo, Fang Chengqiao, Jingzi Xu, Hansen Lin, and Junru Mi
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Pharmacology ,Detection limit ,010405 organic chemistry ,Chemistry ,Elution ,Hydrogen bond ,Organic Chemistry ,Analytical chemistry ,010402 general chemistry ,01 natural sciences ,High-performance liquid chromatography ,Catalysis ,0104 chemical sciences ,Analytical Chemistry ,Chiral column chromatography ,Docking (molecular) ,Drug Discovery ,Enantiomer ,Enantiomeric excess ,Spectroscopy - Abstract
The aim of the paper is to describe a new synthesis route to obtain synthetic optically active clausenamidone and neoclausenamidone and then use high-performance liquid chromatography (HPLC) to determine the optical purities of these isomers. In the process, we investigated the different chromatographic conditions so as to provide the best separation method. At the same time, a thermodynamic study and molecular simulations were also carried out to validate the experimental results; a brief probe into the separation mechanism was also performed. Two chiral stationary phases (CSPs) were compared with separate the enantiomers. Elution was conducted in the organic mode with n-hexane and iso-propanol (IPA) (80/20 v/v) as the mobile phases; the enantiomeric excess (ee) values of the synthetic R-clausenamidone and S-clausenamidone and R-neoclausenamidone and S- neoclausenamidone were higher than 99.9%, and the enantiomeric ratio (er) values of these isomers were 100:0. Enantioselectivity and resolution (α and Rs, respectively) levels with values ranging from 1.03 to 1.99 and from 1.54 to 17.51, respectively, were achieved. The limits of detection and quantitation were 3.6 to 12.0 and 12.0 to 40.0 ug/mL, respectively. In addition, the thermodynamics study showed that the result of the mechanism of chiral separation was enthalpically controlled at a temperature ranging from 288.15 to 308.15 K. Furthermore, docking modeling showed that the hydrogen bonds and π-π interactions were the major forces for chiral separation. The present chiral HPLC method will be used for the enantiomeric resolution of the clausenamidone derivatives.
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- 2018
7. Integrative taxonomy of the Plain-backed Thrush (Zoothera mollissima) complex (Aves, Turdidae) reveals cryptic species, including a new species
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Jingzi Xu, Ruiying Zhang, Tianlong Cai, Shashank Dalvi, Yuyan Guan, Pamela C. Rasmussen, Mikhail Kalyakin, Per Alström, Urban Olsson, Chao Zhao, and Fumin Lei
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0106 biological sciences ,0301 basic medicine ,Systematics ,Species complex ,Zoology ,Biological Systematics ,010603 evolutionary biology ,01 natural sciences ,Forest thrush ,03 medical and health sciences ,Genetics (medical genetics to be 30107 and agricultural genetics to be 40402) ,Biologiska vetenskaper ,Zoothera mollissima ,Ecology, Evolution, Behavior and Systematics ,Evolutionary Biology ,Ecology ,biology ,Biological Sciences ,biology.organism_classification ,030104 developmental biology ,Taxon ,Zoothera dixoni ,Bioinformatics and Systems Biology (methods development to be 10203) ,Animal Science and Zoology ,Taxonomy (biology) ,Thrush - Abstract
Background: The Plain-backed Thrush Zoothera mollissima breeds in the Himalayas and mountains of central China. It was long considered conspecific with the Long-tailed Thrush Zoothera dixoni, until these were shown to be broadly sympatric. Methods: We revise the Z. mollissima–Z. dixoni complex by integrating morphological, acoustic, genetic (two mitochondrial and two nuclear markers), ecological and distributional datasets. Results: In earlier field observations, we noted two very different song types of “Plain-backed” Thrush segregated by breeding habitat and elevation. Further integrative analyses congruently identify three groups: an alpine breeder in the Himalayas and Sichuan, China (“Alpine Thrush”); a forest breeder in the eastern Himalayas and northwest Yunnan (at least), China (“Himalayan Forest Thrush”); and a forest breeder in central Sichuan (“Sichuan Forest Thrush”). Alpine and Himalayan Forest Thrushes are broadly sympatric, but segregated by habitat and altitude, and the same is probably true also for Alpine and Sichuan Forest Thrushes. These three groups differ markedly in morphology and songs. In addition, DNA sequence data from three non-breeding specimens from Yunnan indicate that yet another lineage exists (“Yunnan Thrush”). However, we find no consistent morphological differences from Alpine Thrush, and its breeding range is unknown. Molecular phylogenetic analyses suggest that all four groups diverged at least a few million years ago, and identify Alpine Thrush and the putative “Yunnan Thrush” as sisters, and the two forest taxa as sisters. Cytochrome b divergences among the four Z. mollissima sensu lato (s.l.) clades are similar to those between any of them and Z. dixoni, and exceed that between the two congeneric outgroup species. We lectotypify the name Oreocincla rostrata Hodgson, 1845 with the Z. mollissima sensu stricto (s.s.) specimen long considered its type. No available name unambiguously pertains to the Himalayan Forest Thrush. Conclusions: The Plain-backed Thrush Z. mollissima s.l. comprises at least three species: Alpine Thrush Z. mollissima s.s., with a widespread alpine breeding distribution; Sichuan Forest Thrush Z. griseiceps, breeding in central Sichuan forests; and Himalayan Forest Thrush, breeding in the eastern Himalayas and northwest Yunnan (at least), which is described herein as a new species. “Yunnan Thrush” requires further study.
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- 2016
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8. MOESM6 of Integrative taxonomy of the Plain-backed Thrush (Zoothera mollissima) complex (Aves, Turdidae) reveals cryptic species, including a new species
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AlstrĂśm, Per, Rasmussen, Pamela, Zhao, Chao, Jingzi Xu, Shashank Dalvi, Tianlong Cai, Yuyan Guan, Ruiying Zhang, Kalyakin, Mikhail, Fumin Lei, and Olsson, Urban
- Abstract
Additional file 6: Figure S1. MrBayes analyses of cytochrome b, ND2, concatenated cytochrome b + ND2 and all loci concatenated.
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- 2016
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9. MOESM5 of Integrative taxonomy of the Plain-backed Thrush (Zoothera mollissima) complex (Aves, Turdidae) reveals cryptic species, including a new species
- Author
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Alstrรถm, Per, Rasmussen, Pamela, Zhao, Chao, Jingzi Xu, Shashank Dalvi, Tianlong Cai, Yuyan Guan, Ruiying Zhang, Kalyakin, Mikhail, Fumin Lei, and Olsson, Urban
- Abstract
Additional file 5: Table S2. Output from PCA and DFA on song variables.
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- 2016
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10. Integrative taxonomy of the Plain-backed Thrush (Zoothera mollissima) complex (Aves, Turdidae) reveals cryptic species, including a new species.
- Author
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Alström, Per, Kalyakin, Mikhail V., Olsson, Urban, Ruiying Zhang, Fumin Lei, Tianlong Cai, Yuyan Guan, Rasmussen, Pamela C., Chao Zhao, Jingzi Xu, and Dalvi, Shashank
- Subjects
TURDIDAE ,THRUSHES ,TAXONOMY - Abstract
Background: The Plain-backed Thrush Zoothera mollissima breeds in the Himalayas and mountains of central China. It was long considered conspeciic with the Long-tailed Thrush Zoothera dixoni, until these were shown to be broadly sympatric. Methods: We revise the Z. mollissima-Z. dixoni complex by integrating morphological, acoustic, genetic (two mitochondrial and two nuclear markers), ecological and distributional datasets. Results: In earlier ield observations, we noted two very diferent song types of "Plain-backed" Thrush segregated by breeding habitat and elevation. Further integrative analyses congruently identify three groups: an alpine breeder in the Himalayas and Sichuan, China ("Alpine Thrush"); a forest breeder in the eastern Himalayas and northwest Yunnan (at least), China ("Himalayan Forest Thrush"); and a forest breeder in central Sichuan ("Sichuan Forest Thrush"). Alpine and Himalayan Forest Thrushes are broadly sympatric, but segregated by habitat and altitude, and the same is probably true also for Alpine and Sichuan Forest Thrushes. These three groups difer markedly in morphology and songs. In addition, DNA sequence data from three non-breeding specimens from Yunnan indicate that yet another lineage exists ("Yunnan Thrush"). However, we ind no consistent morphological diferences from Alpine Thrush, and its breeding range is unknown. Molecular phylogenetic analyses suggest that all four groups diverged at least a few million years ago, and identify Alpine Thrush and the putative "Yunnan Thrush" as sisters, and the two forest taxa as sisters. Cytochrome b divergences among the four Z. mollissima sensu lato (s.l.) clades are similar to those between any of them and Z. dixoni, and exceed that between the two congeneric outgroup species. We lectotypify the name Oreocincla rostrata Hodgson, 1845 with the Z. mollissima sensu stricto (s.s.) specimen long considered its type. No available name unambiguously pertains to the Himalayan Forest Thrush. Conclusions: The Plain-backed Thrush Z. mollissima s.l. comprises at least three species: Alpine Thrush Z. mollissima s.s., with a widespread alpine breeding distribution; Sichuan Forest Thrush Z. griseiceps, breeding in central Sichuan forests; and Himalayan Forest Thrush, breeding in the eastern Himalayas and northwest Yunnan (at least), which is described herein as a new species. "Yunnan Thrush" requires further study. [ABSTRACT FROM AUTHOR]
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- 2016
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11. Y-Chromosome Variation in Southern African Khoe-San Populations Based on Whole-Genome Sequences
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Thijessen Naidoo, Jingzi Xu, Helena Malmström, Himla Soodyall, Mário Vicente, Carina M. Schlebusch, and Mattias Jakobsson
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AcademicSubjects/SCI01140 ,0106 biological sciences ,Letter ,AcademicSubjects/SCI01060 ,Population ,Biology ,Y chromosome ,010603 evolutionary biology ,01 natural sciences ,Genome ,DNA sequencing ,Haplogroup ,Khoe-San ,Evolutionsbiologi ,03 medical and health sciences ,Genetics ,education ,Ecology, Evolution, Behavior and Systematics ,030304 developmental biology ,Sampling bias ,2. Zero hunger ,Evolutionary Biology ,0303 health sciences ,education.field_of_study ,AcademicSubjects/SCI01130 ,Variation (linguistics) ,southern Africa ,Human evolution ,Evolutionary biology ,haplogroups ,next-generation sequencing - Abstract
Although the human Y chromosome has effectively shown utility in uncovering facets of human evolution and population histories, the ascertainment bias present in early Y-chromosome variant data sets limited the accuracy of diversity and TMRCA estimates obtained from them. The advent of next-generation sequencing, however, has removed this bias and allowed for the discovery of thousands of new variants for use in improving the Y-chromosome phylogeny and computing estimates that are more accurate. Here, we describe the high-coverage sequencing of the whole Y chromosome in a data set of 19 male Khoe-San individuals in comparison with existing whole Y-chromosome sequence data. Due to the increased resolution, we potentially resolve the source of haplogroup B-P70 in the Khoe-San, and reconcile recently published haplogroup A-M51 data with the most recent version of the ISOGG Y-chromosome phylogeny. Our results also improve the positioning of tentatively placed new branches of the ISOGG Y-chromosome phylogeny. The distribution of major Y-chromosome haplogroups in the Khoe-San and other African groups coincide with the emerging picture of African demographic history; with E-M2 linked to the agriculturalist Bantu expansion, E-M35 linked to pastoralist eastern African migrations, B-M112 linked to earlier east-south gene flow, A-M14 linked to shared ancestry with central African rainforest hunter-gatherers, and A-M51 potentially unique to the Khoe-San.
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