34 results on '"Jiaohui Xu"'
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2. Dynamics and Large Deviations for Fractional Stochastic Partial Differential Equations with Lévy Noise.
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Jiaohui Xu, Tomás Caraballo, and José Valero 0001
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- 2024
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3. Long Time Behavior of Stochastic Nonlocal Partial Differential Equations and Wong-Zakai Approximations.
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Jiaohui Xu and Tomás Caraballo
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- 2022
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4. Well-posedness and dynamics of impulsive fractional stochastic evolution equations with unbounded delay.
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Jiaohui Xu, Zhengce Zhang, and Tomás Caraballo
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- 2019
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5. Detecting Icing on the Blades of a Wind Turbine Using a Deep Neural Network
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Tingshun Li, Jiaohui Xu, Zesan Liu, Dadi Wang, and Wen Tan
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Modeling and Simulation ,Software ,Computer Science Applications - Published
- 2023
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6. Dynamics of stochastic nonlocal reaction–diffusion equations driven by multiplicative noise
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Jiaohui Xu and Tomás Caraballo
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Applied Mathematics ,Analysis - Abstract
This paper deals with fractional stochastic nonlocal partial differential equations driven by multiplicative noise. We first prove the existence and uniqueness of solution to this kind of equations with white noise by applying the Galerkin method. Then, the existence and uniqueness of tempered pullback random attractor for the equation are ensured in an appropriate Hilbert space. When the fractional nonlocal partial differential equations are driven by colored noise, which indeed are approximations of the previous ones, we show the convergence of solutions of Wong–Zakai approximations and the upper semicontinuity of random attractors of the approximate random system as [Formula: see text].
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- 2022
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7. Predicting fan blade icing by using particle swarm optimization and support vector machine algorithm.
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Jiaohui Xu, Wen Tan, and Tingshun Li
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- 2020
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8. Asymptotic behavior of a semilinear problem in heat conduction with long time memory and non-local diffusion
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Jiaohui Xu, Tomás Caraballo, José Valero, and Universidad de Sevilla. Departamento de Ecuaciones Diferenciales y Análisis Numérico
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Global attractors ,Dafermos transformation ,Applied Mathematics ,Long time memory ,Analysis ,Non-local partial differential equations - Abstract
In this paper, the asymptotic behavior of a semilinear heat equation with long time memory and non-local diffusion is analyzed in the usual set-up for dynamical systems generated by differential equations with delay terms. This approach is different from the previous published literature on the long time behavior of heat equations with memory which is carried out by the Dafermos transformation. As a consequence, the obtained results provide complete information about the attracting sets for the original problem, instead of the transformed one. In particular, the proved results also generalize and complete previous literature in the local case.
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- 2022
9. Damping of Low-Frequency Oscillations via Active Disturbance Rejection Control
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Jiaohui Xu and Wen Tan
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Physics ,Electric power system ,Robustness (computer science) ,Control theory ,Mechanical Engineering ,Energy Engineering and Power Technology ,Electrical and Electronic Engineering ,Low frequency ,Active disturbance rejection control ,Stabilizer (aeronautics) - Abstract
Linear active disturbance rejection control (LADRC) is applied as power system stabilizer (PSS) in power systems to damp the low-frequency oscillations. A tuning method for second-order LADRC is pr...
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- 2021
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10. Dynamics of stochastic nonlocal partial differential equations
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Tomás Caraballo, Jiaohui Xu, Universidad de Sevilla. Departamento de Ecuaciones Diferenciales y Análisis Numérico, and Universidad de Sevilla. FQM314: Análisis Estocástico de Sistemas Diferenciales
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Fluid Flow and Transfer Processes ,Partial differential equation ,Dynamical systems theory ,Differential equation ,General Physics and Astronomy ,Multiplicative noise ,Stochastic partial differential equation ,symbols.namesake ,Pullback ,Wiener process ,Attractor ,symbols ,Applied mathematics ,Mathematics - Abstract
This paper is concerned with the asymptotic behavior of solutions to nonlocal stochastic partial differential equations with multiplicative and additive noise driven by a standard Brownian motion, respectively. First of all, the stochastic nonlocal differential equations are transformed into their associated conjugated random differential equations, we then construct the dynamical systems to the original problems via the properties of conjugation. Next, in the case of multiplicative noise, we establish the existence of the random attractor when it absorbs every bounded deterministic set. Particularly, it is shown the pullback random attractor, which is also forward attracting, becomes a singleton when the external forcing term vanishes at zero. Eventually, in the case of additive noise, two approaches are applied to prove the existence of pullback random attractors with the help of energy estimations. Actually, these two attractors turn out to be the same one.
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- 2021
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11. Mild Solutions to Time Fractional Stochastic 2D-Stokes Equations with Bounded and Unbounded Delay
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Tomás Caraballo, Zhengce Zhang, Jiaohui Xu, Universidad de Sevilla. Departamento de Ecuaciones Diferenciales y Análisis Numérico, and Universidad de Sevilla. FQM314: Análisis estocástico de sistemas diferenciales
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Partial differential equation ,010102 general mathematics ,Finite delay ,Multiplicative noise ,Order (ring theory) ,Sigma ,01 natural sciences ,010101 applied mathematics ,Alpha (programming language) ,Well-posedness ,Ordinary differential equation ,Bounded function ,Mild solution ,Applied mathematics ,Uniqueness ,0101 mathematics ,Infinite delay ,Analysis ,Stochastic time fractional 2D-Stokes equations ,Mathematics - Abstract
In this paper, the well-posedness of stochastic time fractional 2D-Stokes equations of order $$\alpha \in (0,1)$$ containig finite or infinite delay with multiplicative noise is established, respectively, in the spaces $$C([-h,0];L^2(\varOmega ;L^2_{\sigma }))$$ and $$C((-\infty ,0];L^2(\varOmega ;L^2_{\sigma }))$$. The existence and uniqueness of mild solution to such kind of equations are proved by using a fixed-point argument. Also the continuity with respect to initial data is shown. Finally, we conclude with several comments on future research concerning the challenging model: time fractional stochastic delay 2D-Navier–Stokes equations with multiplicative noise. Hence, this paper can be regarded as a first step to study this challenging topic.
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- 2019
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12. Anomaly detection for heavy power generation gas turbine considering the effect of output power variation
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Junjie Zhu, Jiaohui Xu, Xudong Han, Zhong Wang, and Yujiong Gu
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Gas turbines ,0209 industrial biotechnology ,020209 energy ,Mechanical Engineering ,Process (computing) ,Energy Engineering and Power Technology ,02 engineering and technology ,Automotive engineering ,Power (physics) ,020901 industrial engineering & automation ,Electricity generation ,0202 electrical engineering, electronic engineering, information engineering ,Environmental science ,Anomaly detection ,Anomaly (physics) ,Variation (astronomy) ,Frequency modulation - Abstract
In the frequency modulation process of the heavy power generation gas turbine, the variation of output power will cause the fluctuation of the operating parameters. In order to detect the anomaly of the true performance deterioration accurately, a novel statistical anomaly detection model was developed. First, the mathematical description of the operating parameters under three different operating conditions—unsteady-state, steady-state and normal, steady-state and anomaly—was presented according to the characteristics of parameters and output power. Second, the new characteristic test statistic P-ratio based on the T-statistic was proposed for the anomaly detection under the steady-state condition. Then, the on-line steady-state detection algorithm based on the Gaussian mixture model was built for the unsteady-state identification. Finally, the efficacy of the model was examined on the synthetic deterioration data, which superimposes the anomaly simulation signal data on the real healthy data from a real power generation gas turbine. The testing result is shown to be satisfactory with respect to the false positive rate and the true positive rate. Future research is required to further improve the accuracy of the proposed model.
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- 2019
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13. Non-autonomous nonlocal partial differential equations with delay and memory
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Jiaohui Xu, Tomás Caraballo, Zhengce Zhang, Universidad de Sevilla. Departamento de Ecuaciones Diferenciales y Análisis Numérico, Ministerio de Ciencia, Innovación y Universidades (MCIU). España, Agencia Estatal de Investigación (AEI). España, European Commission (EC). Fondo Europeo de Desarrollo Regional (FEDER), and Junta de Andalucía (Consejería de Economía y Conocimiento)
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Non-autonomous nonlocal parabolic equations ,Partial differential equation ,Applied Mathematics ,Mathematical analysis ,Bounded and unbounded delays ,Pullback attractors ,Fixed-point theorem ,Pullback attractor ,Parabolic partial differential equation ,Stability (probability) ,Bounded function ,Phase space ,Stationary solutions ,Galerkin method ,Analysis ,Mathematics - Abstract
The paper addresses a kind of non-autonomous nonlocal parabolic equations when the external force contains hereditary characteristics involving bounded and unbounded delays. First, well-posedness of the problem is analyzed by the Galerkin method and energy estimations in the phase space Cρ(X). Moreover, some results related to strong solutions are proved under suitable assumptions. The existence of stationary solutions is then established by a corollary of the Brower fixed point theorem. By constructing appropriate Lyapunov functionals in terms of the characteristic delay terms, a deep analysis on stability and attractive-ness of the stationary solutions is established. Furthermore, the existence of pullback attractors in L2( ), with bounded and unbounded delays, is shown. We emphasize that, to prove the existence of pullback attractors in the unbounded delay case, a new phase space, Eγ, has to be constructed. Ministerio de Ciencia, Innovación y Universidades (MCIU). España Agencia Estatal de Investigación (AEI). España Fondo Europeo de Desarrollo Regional (FEDER) Junta de Andalucía (Consejería de Economía y Conocimiento)
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- 2020
14. Asymptotic behavior of nonlocal partial differential equations with long time memory
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Tomás Caraballo, José Valero, Jiaohui Xu, Universidad de Sevilla. Departamento de Ecuaciones diferenciales y Análisis numérico, and Universidad de Sevilla. FQM314: Análisis Estocástico de Sistemas Diferenciales
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Global attractors ,Partial differential equation ,Dafermos transformation ,Applied Mathematics ,Dynamical system ,Nonlocal partial differential equations ,Transformation (function) ,Attractor ,Discrete Mathematics and Combinatorics ,Applied mathematics ,Standard theory ,Long time memory ,Equivalence (measure theory) ,Analysis ,Mathematics - Abstract
In this paper, it is first addressed the well-posedness of weak solutions to a nonlocal partial differential equation with long time memory, which is carried out by exploiting the nowadays well-known technique used by Dafermos in the early 70's. Thanks to this Dafermos transformation, the original problem with memory is transformed into a non-delay one for which the standard theory of autonomous dynamical system can be applied. Thus, some results about the existence of global attractors for the transformed problem are {proved}. Particularly, when the initial values have higher regularity, the solutions of both problems (the original and the transformed ones) are equivalent. Nevertheless, the equivalence of global attractors for both problems is still unsolved due to the lack of enough regularity of solutions in the transformed problem. It is therefore proved the existence of global attractors of the transformed problem. Eventually, it is highlighted how to proceed to obtain meaningful results about the original problem, without performing any transformation, but working directly with the original delay problem.
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- 2022
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15. Synergistic effect of tubular amorphous carbon and polypyrrole on polysulfides in Li-S batteries
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Qing Jiang, Huan Li, Chunwei Dong, Jiaohui Xu, Bo Jin, Shanshan Li, and Bo Zhang
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Chemistry ,General Chemical Engineering ,Inorganic chemistry ,Composite number ,02 engineering and technology ,engineering.material ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Electrochemistry ,Polypyrrole ,01 natural sciences ,Cathode ,0104 chemical sciences ,Analytical Chemistry ,law.invention ,Amorphous solid ,chemistry.chemical_compound ,Coating ,Chemical engineering ,Amorphous carbon ,law ,engineering ,0210 nano-technology ,Layer (electronics) - Abstract
In order to explore a cathode material with high electrochemical performance for lithium-sulfur batteries (LSBs), a novel core-shell structured tubular amorphous carbon@sulfur@polypyrrole (TAC@S@PPy) composite with a dual-conductive layer is synthesized by in-situ chemical precipitation and chemical oxidation polymerization, including a TAC conductive matrix layer, an intermediate sulfur layer, and an external PPy coating layer with a certain conductivity and adsorptivity for polysulfides. Compared to pure sulfur and TAC@S composite, the core-shell structured TAC@S@PPy composite exhibits a higher discharge specific capacity of 1111 mAh g− 1, and still maintains at 731 mAh g− 1 after 100 cycles at a current density of 335 mA g− 1. Whereas, TAC@S composite and pure sulfur only retain 472 and 224 mAh g− 1 after 100 cycles at the same current density, respectively. Therefore, these results indicate that the core-shell structured TAC@S@PPy composite with a dual-conductive layer would be a promising cathode for LSBs.
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- 2017
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16. Sulfur/alumina/polypyrrole ternary hybrid material as cathode for lithium-sulfur batteries
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Huan Li, Bo Jin, Qing Jiang, and Jiaohui Xu
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Materials science ,Renewable Energy, Sustainability and the Environment ,Inorganic chemistry ,Energy Engineering and Power Technology ,chemistry.chemical_element ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,Electrochemistry ,Polypyrrole ,01 natural sciences ,Sulfur ,Cathode ,0104 chemical sciences ,law.invention ,chemistry.chemical_compound ,Fuel Technology ,Adsorption ,chemistry ,law ,Lithium ,0210 nano-technology ,Hybrid material ,Ternary operation - Abstract
Recently, lithium-sulfur batteries (LSBs) have received extensive attention due to its high energy density of 2600 Wh kg−1. At the same time, sulfur is earth-abundant, economical and non-poisonous. Nevertheless, the poor electrochemical performance restricts its commercial application, including the inferior cycling stability caused by the significant dissolution of lithium polysulfides and the low specific capacity because of the poor electrical conductivity of sulfur. In this work, we adopt a simple and amicable process to prepare sulfur/alumina/polypyrrole (S/Al2O3/PPy) ternary hybrid material to overcome these defects. In this strategy, each composition of the ternary hybrid material plays an essential role in cathode: alumina and PPy can provide strong adsorption for the dissolved intermediate polysulfides. Meanwhile, PPy also works as a conductive and flexible additive to expedite electron transport, and is coated on the surface of the as-prepared S Al2O3 composite by in situ chemical polymerization. The sulfur is encapsulated uniformly and perfectively by the two components, which is confirmed by field emission scanning electron microscope. The ternary hybrid material manifests good electrochemical performance as expected, and displays high initial discharge capacity of 1088 mA h g−1 and a discharge capacity of 730 mA h g−1 after 100 cycles at a current density of 200 mA g−1. Besides, S/Al2O3/PPy also shows good rate capability. The synergy between alumina and PPy is the decisive factor, which gives rise to good electrochemical performance of cathode for high-performance LSBs.
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- 2017
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17. Asymptotic behavior of stochastic lattice systems with a Caputo fractional time derivative
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Yejuan Wang, Peter E. Kloeden, and Jiaohui Xu
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Applied Mathematics ,010102 general mathematics ,Mathematical analysis ,Crystal system ,Hilbert space ,Lipschitz continuity ,01 natural sciences ,Fractional calculus ,010101 applied mathematics ,symbols.namesake ,Nonlinear system ,Lattice (order) ,Time derivative ,symbols ,Uniqueness ,0101 mathematics ,Analysis ,Mathematics - Abstract
The asymptotic behavior of a stochastic lattice system with a Caputo fractional time derivative is investigated. In particular, the existence of a global forward attracting set in the weak mean-square topology is established. A general theorem on the existence of solutions for a fractional SDE in a Hilbert space under the assumption that the nonlinear term is weakly continuous in a given sense is established and applied to the lattice system. The existence and uniqueness of solutions for a more general fractional SDEs is also obtained under a Lipschitz condition.
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- 2016
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18. The Application of High-throughput Sequencing Technology in Plant and Animal Research
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JiaoHui Xu, Junyi Wang, Ye Yin, Guidong Yue, LongHai Luo, and Qiang Gao
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Whole genome sequencing ,business.industry ,Genomics ,Epigenome ,Computational biology ,Biology ,Genome ,DNA sequencing ,Biotechnology ,Pharmacology (medical) ,business ,Functional genomics ,Epigenomics ,Personal genomics - Abstract
High-throughput sequencing technology is a revolutionary technological innovation of sequencing technology. This technology, with low cost and high throughput data, brought new research methods and solutions for genomics and post genomics research. In plant and animal research, the high-throughput sequencing, leading a landmark innovation in scientific research model, can improve researches in the genome, transcriptome and epigenome, and multi-level system. In this review, we described the research progress of high-throughput sequencing applications in plant and animal genomics and functional genomics, and the current status and hot points of high-throughput sequencing technology. We also discussed the trends in the further application of high-throughput sequencing.
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- 2012
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19. Recent Progress Using High-throughput Sequencing Technologies in Plant Molecular BreedingF
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Jiaohui Xu, Junyi Wang, Wenqi Li, Qiang Gao, Guidong Yue, and Ye Yin
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0106 biological sciences ,Molecular breeding ,Crops, Agricultural ,0303 health sciences ,business.industry ,Quantitative Trait Loci ,Genetic Variation ,Genomics ,DNA Shuffling ,Plant Science ,Sequence Analysis, DNA ,Biology ,01 natural sciences ,Biochemistry ,Data science ,Genome ,General Biochemistry, Genetics and Molecular Biology ,DNA sequencing ,Biotechnology ,03 medical and health sciences ,Mutation ,business ,Genome, Plant ,030304 developmental biology ,010606 plant biology & botany - Abstract
High-throughput sequencing is a revolutionary technological innovation in DNA sequencing. This technology has an ultra-low cost per base of sequencing and an overwhelmingly high data output. High-throughput sequencing has brought novel research methods and solutions to the research fields of genomics and post-genomics. Furthermore, this technology is leading to a new molecular breeding revolution that has landmark significance for scientific research and enables us to launch multi-level, multi-faceted, and multi-extent studies in the fields of crop genetics, genomics, and crop breeding. In this paper, we review progress in the application of high-throughput sequencing technologies to plant molecular breeding studies.
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- 2012
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20. The genome of the mesopolyploid crop species Brassica rapa
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Binghang Liu, Wei Hua, Zhenyu Li, Chunfang Peng, Jeong-Sun Kim, J. Chris Pires, Beom-Seok Park, Shengyi Liu, Shu Zhang, Ye Yin, Chaobo Tong, Tae-Ho Lee, Yang Qiu, Di Shen, Sanwen Huang, Qingle Cai, Jin A Kim, Shunmou Huang, Lu Fang, Graham J.W. King, Nizar Drou, Bo Li, Gavin C. Conant, Bernd Weisshaar, Jiaohui Xu, Jun Wang, Zhiyong Xiong, Fei Li, Chi Song, Zhonghua Zhang, Matthew G. Links, Rifei Sun, Jinpeng Wang, Fiona Fraser, Chuyu Lin, Yongcui Liao, Chushin Koh, Wei Fan, Su-Ryun Choi, Shusei Sato, Shifeng Cheng, Xiang Zhao, Jeong-Hwan Mun, Hideki Hirakawa, Harry Belcram, Zhiwen Wang, Martin Trick, Alice Hayward, Xixiang Li, Shujiang Zhang, Desheng Mu, Satoshi Tabata, Silong Sun, Isobel A. P. Parkin, Bo Liu, Xu Tan, Nirala Ramchiary, Guusje Bonnema, Yinqi Bai, Yoshihiro Narusaka, Yongchen Du, Hui Wang, Julie Poulain, Xun Xu, Yupeng Wang, Yan Wang, Haibao Tang, Zhenyi Wang, Meixia Zhao, David Edwards, Jinling Meng, Chris Duran, Andrew H. Paterson, Soo-Jin Kwon, Hanzhong Wang, Feng Cheng, Heling Zhou, Geng Chunyu, Jacqueline Batley, Bo Wang, Yingrui Li, Junyi Wang, Gilles Lassalle, Boulos Chalhoub, Jianwen Li, Yong Pyo Lim, Quanfei Huang, Eleni Soumpourou, Jian Wu, Katsunori Hatakeyama, Xiaowu Wang, Paul J. Berkman, Ian Bancroft, Jérémy Just, Jingyin Yu, Hui Guo, Kui Wu, Li Wang, Ruiqiang Li, Xiyin Wang, Huizhe Jin, Haiping Wang, Andrew G. Sharpe, Michael Freeling, Hiroshi Abe, Mina Jin, Jie Deng, Jiumeng Min, Jingping Li, Institute of Vegetables and Flowers (IVF), Chinese Academy of Agricultural Sciences (CAAS), Zhejiang University, Oil Crops Research Institute, Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture-Chinese Academy of Agricultural Sciences (CAAS), Department of Plant Pathology, University of Kentucky (UK), Rural Development Administration, Department of Biology, University of York [York, UK], Hasso Plattner Institute (HPI), University of Potsdam = Universität Potsdam, Institute of Vegetable sand Flowers, Key Laboratory for Ultrafine Materials, East China University of Science and Technology, Beijing Genom Inst Shenzhen, University of Georgia [USA], School of Life Sciences, Center of Genomics and Computational Biology, Hebei United University, University of California [Berkeley] (UC Berkeley), University of California (UC), The Hospital for sick children [Toronto] (SickKids), University of Toronto, Unité de recherche en génomique végétale (URGV), Institut National de la Recherche Agronomique (INRA)-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS), State Key Laboratory for Mineral Deposits Research, Nanjing University (NJU), Amélioration des Plantes et Biotechnologies Végétales (APBV), and Institut National de la Recherche Agronomique (INRA)-Université de Rennes (UR)-AGROCAMPUS OUEST
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Genome evolution ,Chromosomes, Artificial, Bacterial ,lineages ,diversification ,[SDV]Life Sciences [q-bio] ,Molecular Sequence Data ,Arabidopsis ,Biology ,Genes, Plant ,Genome ,Chromosomes, Plant ,Evolution, Molecular ,Polyploidy ,Contig Mapping ,Laboratorium voor Plantenveredeling ,Gene density ,Gene Duplication ,Brassica rapa ,evolution ,genetics ,Gene ,Phylogeny ,Genetics ,Whole genome sequencing ,repressor ,EPS-3 ,fungi ,duplicated genes ,food and beverages ,Molecular Sequence Annotation ,alignment ,Genome project ,Sequence Analysis, DNA ,sequence ,Plant Breeding ,Paleopolyploidy ,plant arabidopsis-thaliana ,Genome, Plant ,triplication - Abstract
The Brassicaceae family which includes Arabidopsis thaliana, is a natural priority for reaching beyond botanical models to more deeply sample angiosperm genomic and functional diversity. Here we report the draft genome sequence and its annoation of Brassica rapa, one of the two ancestral species of oilseed rape. We modeled 41,174 protein-coding genes in the B. rapa genome. B. rapa has experienced only the second genome triplication reported to date, with its close relationship to A. thaliana providing a useful outgroup for investigating many consequences of triplication for its structural and functional evolution. The extent of gene loss (fractionation) among triplicated genome segments varies, with one copy containing a greater proportion of genes expected to have been present in its ancestor (70 percent) than the remaining two (46 percent and 36 percent). Both a generally rapid evolutionary rate, and specific copy number amplifications of particular gene families, may contribute to the remarkable propensity of Brassica species for the development of new morphological variants. The B. rapa genome provides a new resource for comparative and evolutionary analysis of the Brassicaceae genomes and also a platform for genetic improvement of Brassica oil and vegetable crops.
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- 2011
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21. Overexpression of the GmGAL2 Gene Accelerates Flowering in Arabidopsis
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Xiaofang Zhong, Qingzhu Zhang, Hongyu Li, and Jiaohui Xu
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biology ,Agamous ,fungi ,food and beverages ,Locus (genetics) ,Plant Science ,biology.organism_classification ,Article ,Soybean (Glycine max [L.] Merr.) ,GmGAL2 ,Flowering ,Arabidopsis ,Botany ,Flowering Locus C ,Ectopic expression ,Silique ,MADS box ,Molecular Biology ,Gene ,MADS-box - Abstract
A soybean MADS box gene GmGAL2 (Glycine max AGAMOUS Like 2), a homolog of AGL11/STK, was investigated in transgenic Arabidopsis lines. Ectopic expression of GmGAL2 in Arabidopsis enhanced flowering, under both long-day and short-day conditions, by promoting expression of key flowering genes, CONSTANS (CO) and FLOWERING LOCUS T (FT), and lowering expression of floral inhibiter FLOWERING LOCUS C (FLC). Moreover, frequency of silique pod set was also lower in transgenic compared to control Arabidopsis plants. RT-PCR results revealed that GmGAL2 was primarily expressed in the flowers and pods of soybean plants, GmGAL2 expressed higher in SD than LD in soybean.
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- 2010
22. Analysis of clock gene homologs using unifoliolates as target organs in soybean (Glycine max)
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Baoli Wang, Yongfu Fu, Honggui Wang, Jiaohui Xu, Tongda Xu, Pengfei Gao, Hua Liu, Jingshan Wang, and Chentao Lin
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Time Factors ,Physiology ,Photoperiod ,Molecular Sequence Data ,TOC1 ,Arabidopsis ,Flowers ,Plant Science ,Biological Clocks ,Gene Expression Regulation, Plant ,Sequence Homology, Nucleic Acid ,Gene expression ,Botany ,Amino Acid Sequence ,Gene ,Conserved Sequence ,photoperiodism ,biology ,fungi ,Gene Expression Regulation, Developmental ,food and beverages ,Plant physiology ,biology.organism_classification ,Circadian Rhythm ,CLOCK ,Biochemistry ,Organ Specificity ,Glycine ,Soybean Proteins ,Soybeans ,Sequence Alignment ,Agronomy and Crop Science - Abstract
Summary Soybean is a typical short-day crop, and its photoperiodic response of flowering is critical to its yield. This phenomenon was well studied during the last century, but the molecular mechanism governing it is unknown. The clock-gene homologs, GmLCL1 and GmLCL2 ( Glycine max LHY/CCA1 Like 1 and 2 ) and GmTOC1 ( Glycine max TOC1 ) were cloned from Glycine max L. KN18, and their expression patterns were analyzed using a system developed in this study. We employed 8 h light/16 h dark and 18 h light/6 h dark as short- and long-day conditions, respectively, because in these conditions soybean plants had significant indexes of flowering time. We also used unifoliolates, not the whole plant as Arabidopsis , as target organs for gene expression analysis. GmLCL1 and GmLCL2 had similar circadian expression patterns and both were morning genes, while GmTOC1 was an evening gene and peaked in the evening. The expressions of GmLCL1 and GmLCL2 were obviously antiphase to that of GmTOC1 .Our study provided a system that simplified the experiments without compromising the quality of data obtained and was suitable for analyzing the molecular mechanism of flowering in soybean. GmLCL1 , GmLCL2 and GmTOC1 may be the components of central clock in soybean.
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- 2009
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23. Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization
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Changying Ling-Hu, Haiyang Wu, Maojun Zhao, Shuai Cheng Li, Changshui Yu, Shu Tan, Xiangqun Tang, Paul W. Bosland, Junyi Wang, Ye Yin, Xiaodan Lv, Hemi Luan, Xin Tang, Salvador Montes-Hernández, Xiaodian Wang, Xiujing He, Yingrui Li, Jiaowen Cheng, Xirong Luo, Zhe Chen, Shancen Zhao, Jiaohui Xu, Yong Luo, Shimin Bi, Yonggang Zhang, Meng Xu, Zhiqiang Xiong, Yongqiang Feng, Lijun Bai, Shangxing Zhang, Yinchao Zhang, Alain Palloix, Hao Tian, Luis Herrera-Estrella, Zhiming Zhang, Junjie Cui, Lang Chen, Li Zhang, Zhiyong Huang, Yulan Yang, Xueqin Li, Bo Wen, Yongchao Niu, Marco Antonio Leyva-González, Anders Krogh, Yan Zhang, Min Wang, Kailin Hu, Maoshan Chen, Wenqi Li, Xiuwei Yang, Xiaodong Fang, Jiping Yu, Weiqin Liao, Yaou Shen, Sandra Isabel González-Morales, Rafael F. Rivera-Bustamante, Likai Mao, Haijian Lin, Zhiming Wu, Huimin Cai, Lu Zhang, Diana L. Trejo-Saavedra, Dan Liu, Cheng Qin, Anwei Zhou, Jiumeng Min, Xiaoming Yao, Weipeng Li, Hongjun Liu, Huangkai Zhou, Jinwen Liu, Shuang Yang, Ministry of Agriculture, Zunyi Academy of Agricultural Sciences, Partenaires INRAE, College of Horticulture, Northwest Agriculture and Forestry University, Beijing Genomics Institute [Shenzhen] (BGI), Department of Biology, Northern Arizona University [Flagstaff], Zhongkai University of Agriculture and Engineering, Centro de Investigacion y de Estudios Avanzados del Instituto Politécnico Nacional (CINVESTAV), Instituto Politécnico Nacional, Sichuan Agricultural University, Instituto Nacional de Investigaciones Forestales, Agricolas y Pecuarias [Mexico] (INIFAP), City University of Hong Kong, Génétique et Amélioration des Fruits et Légumes (GAFL), Institut National de la Recherche Agronomique (INRA), New Mexico State University, Zunyi City, Zunyi Academy of Agricultural Sciences Natural Science Foundation of China [201201], and Guangdong Natural Science Foundation of China [S2011030001410]
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0106 biological sciences ,[SDV]Life Sciences [q-bio] ,Retrotransposon ,01 natural sciences ,Genome ,genome expansion ,03 medical and health sciences ,Pepper ,[SDV.BV]Life Sciences [q-bio]/Vegetal Biology ,de novo genome sequence ,Domestication ,Gene ,030304 developmental biology ,2. Zero hunger ,Whole genome sequencing ,Genetics ,0303 health sciences ,Multidisciplinary ,Solanaceae evolution ,biology ,fungi ,food and beverages ,15. Life on land ,Biological Sciences ,biology.organism_classification ,Capsicum ,Solanaceae ,Genome, Plant ,010606 plant biology & botany ,Reference genome - Abstract
As an economic crop, pepper satisfies people's spicy taste and has medicinal uses worldwide. To gain a better understanding of Capsicum evolution, domestication, and specialization, we present here the genome sequence of the cultivated pepper Zunla-1 (C. annuum L.) and its wild progenitor Chiltepin (C. annuum var. glabriusculum). We estimate that the pepper genome expanded similar to 0.3 Mya (with respect to the genome of other Solanaceae) by a rapid amplification of retrotransposons elements, resulting in a genome comprised of similar to 81% repetitive sequences. Approximately 79% of 3.48-Gb scaffolds containing 34,476 protein-coding genes were anchored to chromosomes by a high-density genetic map. Comparison of cultivated and wild pepper genomes with 20 resequencing accessions revealed molecular footprints of artificial selection, providing us with a list of candidate domestication genes. We also found that dosage compensation effect of tandem duplication genes probably contributed to the pungent diversification in pepper. The Capsicum reference genome provides crucial information for the study of not only the evolution of the pepper genome but also, the Solanaceae family, and it will facilitate the establishment of more effective pepper breeding programs.
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- 2014
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24. The tiger genome and comparative analysis with lion and snow leopard genomes
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Junyi Wang, Young Ah Shin, Hang Lee, Soowhan Kwon, Sangtae Kim, Jiaju He, Damdin Bayarlkhagva, Wilhelm Jacobs, Sunghoon Lee, Qian Zhou, Susan M. Miller, Jilin Zhang, Sukhun Oh, Hwanjong Kwak, Ying Chen, Caiyun Gou, Chang Bae Kim, Yadan Luo, Junsu Ko, Tae Hyung Kim, Sha Liu, Jiaohui Xu, Sanyang Liu, Linfeng Yang, Warren E. Johnson, Xiuhui Chu, Byung Chul Kim, Seong-Jin Kim, Sangsoo Kim, Chulhong Kim, Chang Uk Kim, Laura D. Bertola, Priyvrat Gadhvi, Jong Bhak, Hyun Ju Jung, Yun Sung Cho, Jong-Soo Kim, Hak-Min Kim, Seungwoo Hwang, Jing He, Sungwoong Jho, Woon Kee Paek, Yingqi Xiong, Stephen J. O'Brien, Shengkai Pan, Klaus-Peter Koepfli, Pengwei Xu, Jun Wang, Cindy Kim Harper, Hyunmin Kim, Haolong Hou, Anne Schmidt-Küntzel, Laurie Marker, Li Hu, Xiao Xu, Shu-Jin Luo, Jason A. Turner, and Yulan Yang
- Subjects
Lions ,Molecular Sequence Data ,Endangered species ,General Physics and Astronomy ,Zoology ,Synteny ,Genome ,Article ,General Biochemistry, Genetics and Molecular Biology ,biology.animal ,Genetic variation ,Animals ,Panthera ,Amino Acid Sequence ,Tigers ,Population Density ,Multidisciplinary ,biology ,Tiger ,Genetic Variation ,General Chemistry ,biology.organism_classification ,Adaptation, Physiological ,White (mutation) ,Snow leopard ,Mutation ,sense organs ,Bengal tiger - Abstract
Tigers and their close relatives (Panthera) are some of the world’s most endangered species. Here we report the de novo assembly of an Amur tiger whole-genome sequence as well as the genomic sequences of a white Bengal tiger, African lion, white African lion and snow leopard. Through comparative genetic analyses of these genomes, we find genetic signatures that may reflect molecular adaptations consistent with the big cats’ hypercarnivorous diet and muscle strength. We report a snow leopard-specific genetic determinant in EGLN1 (Met39>Lys39), which is likely to be associated with adaptation to high altitude. We also detect a TYR260G>A mutation likely responsible for the white lion coat colour. Tiger and cat genomes show similar repeat composition and an appreciably conserved synteny. Genomic data from the five big cats provide an invaluable resource for resolving easily identifiable phenotypes evident in very close, but distinct, species., Tigers are an endangered species and therefore understanding their genetic architecture could aid conservation efforts. Here, the authors report the first genome sequence of the Amur tiger and, through close species comparative genomic analysis, provide insight into the genome organization, evolutionary divergence and diversity of big cats.
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- 2013
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25. The analysis and implementation of UDP-based cross-platform data transmission
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Jiaohui Xu, Cheng Yongqiang, Tingshun Li, and Weiying Zhu
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XML Encryption ,Database ,Java ,Computer science ,computer.internet_protocol ,SOAP ,ComputerSystemsOrganization_COMPUTER-COMMUNICATIONNETWORKS ,Efficient XML Interchange ,XML Signature ,computer.file_format ,computer.software_genre ,XML framework ,XML Schema (W3C) ,XML database ,Simple API for XML ,Java API for XML-based RPC ,XML Protocol ,Streaming XML ,Fast Infoset ,computer ,XML ,computer.programming_language - Abstract
The analysis and implementation of UDP-based cross-platform data shows that the advantages of UDP protocol are better understood and it's the best places of application. Further, master the knowledge of data transmission and the operation to XML file. By parsing an XML document, which will extract the data stored, and then packaged in these data through the UDP protocol, send data to the receiving program, After the receiving program receives the data, the data in the package open, extract original data, and then use these data to generate relevant content of the XML file, in the end output. In addition, the article also reflects the advantage of Java language: cross-platform.
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- 2012
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26. Analysis of the lighting position system based on corridor radius algorithm
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Jiaohui Xu, Tingshun Li, Jing Zhou, and Cheng Yongqiang
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Geographic information system ,Computer science ,business.industry ,Line (geometry) ,Electric power ,Electricity ,Grid ,Fault (power engineering) ,Geographic coordinate system ,business ,Algorithm ,Lightning - Abstract
This paper describes the impact of lightning on grid line, based on corridor radius algorithm, realize the grid lines surrounding lightning location analysis methods, including lightning occurs time, latitude and longitude, electricity, etc. Through comprehensive analysis of the lightning information and grid lines transmission information, fault information to judge whether lightning cause grid line fault. Through the data mining, and then analyzes the lightning and grid line fault correlation relationship. According to this research result, we have developed the ‘lightning automatic statistic analysis system’, it can show the location and polarity of lightning in GIS system as image, providing reference basis for electric power dispatching.
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- 2011
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27. The security emergency command system in oil depot based on HSE
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Jing Zhou, Jiaohui Xu, Tingshun Li, and Yue Sun
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Management information systems ,Geographic information system ,Petroleum industry ,business.industry ,Computer science ,Depot ,Command system ,ComputerApplications_COMPUTERSINOTHERSYSTEMS ,Computer security ,computer.software_genre ,business ,computer ,Visualization - Abstract
According to the System Theory and the requirement in the oil depot area, combined with the application integration of OA, HSE, GIS system, the article describes The Security emergency command system in oil depot. It may realize the HSE management information, the visualization and integration conformity of the storehouse district security hardware, therefore, it is very important to improve the emergency command ability and safety management of the oil depot area.
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- 2011
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28. Analysis of the lighting position system based on corridor radius algorithm.
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Tingshun Li, Jing Zhou, Jiaohui Xu, and Yongqiang Cheng
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- 2011
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29. Genome sequence of ground tit Pseudopodoces humilis and its adaptation to high altitude.
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Qingle Cai, Xiaoju Qian, Yongshan Lang, Yadan Luo, Jiaohui Xu, Shengkai Pan, Yuanyuan Hui, Caiyun Gou, Yue Cai, Meirong Hao, Jinyang Zhao, Songbo Wang, Zhaobao Wang, Xinming Zhang, Rongjun He, Jinchao Liu, Longhai Luo, Yingrui Li, and Jun Wang
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- 2013
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30. Overexpression of the Gm GAL2 Gene Accelerates Flowering in Arabidopsis.
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Jiaohui Xu, Xiaofang Zhong, Qingzhu Zhang, and Hongyu Li
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- *
SOYBEAN , *GLYCINE , *ARABIDOPSIS , *GENE expression in plants , *PLANT genetics - Abstract
A soybean MADS box gene Gm GAL2 ( Glycine max AGAMOUS Like 2), a homolog of AGL11/ STK, was investigated in transgenic Arabidopsis lines. Ectopic expression of Gm GAL2 in Arabidopsis enhanced flowering, under both long-day and short-day conditions, by promoting expression of key flowering genes, CONSTANS ( CO) and FLOWERING LOCUS T ( FT), and lowering expression of floral inhibiter FLOWERING LOCUS C ( FLC). Moreover, frequency of silique pod set was also lower in transgenic compared to control Arabidopsis plants. RT-PCR results revealed that Gm GAL2 was primarily expressed in the flowers and pods of soybean plants, Gm GAL2 expressed higher in SD than LD in soybean. [ABSTRACT FROM AUTHOR]
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- 2010
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31. The security emergency command system in oil depot based on HSE.
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Tingshun Li, Jing Zhou, Jiaohui Xu, and Yue Sun
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- 2011
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32. Correction: The genome sequence of the ground tit Pseudopodoces humilis provides insights into its adaptation to high altitude
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Meirong Hao, Jinchao Liu, Jun Wang, Yongshan Lang, Yingrui Li, Jinyang Zhao, Longhai Luo, Yuanyuan Hui, Xinming Zhang, Caiyun Gou, Yue Cai, Rongjun He, Xiaoju Qian, Yadan Luo, Songbo Wang, Jiaohui Xu, Qingle Cai, Shengkai Pan, and Zhaobao Wang
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Whole genome sequencing ,Ground tit ,biology ,Phylogenetics ,Evolutionary biology ,Corvidae ,Correction ,Adaptation ,biology.organism_classification ,Zebra finch ,Pseudopodoces - Abstract
1. Fumin Lei is no longer listed as an author of this article. Instead, his helpful input is noted in the acknowledgements section. 2. The provisional version of this article mistakenly stated that zebra finch belongs to the Paridae family. We have now corrected this error to reflect the classification of this species to the Estrildidae family. 3. In the abstract of the provisional version of the article we stated that the phylogeny of the ground tit was confirmed as belonging to the Paridae family. We have now re-phrased this sentence to say that ground tit phylogeny was confirmed as not belonging to the Corvidae family. 4. In the conclusions of the provisional version of the article we stated that the phylogeny of the ground tit was confirmed as not belonging to the Corvidae family but to the Paridae family. We have now re-phrased this conclusion to say that ground tit phylogeny was confirmed as not belonging to the Corvidae family.
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33. Genome sequence of ground tit Pseudopodoces humilis and its adaptation to high altitude
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Longhai Luo, Meirong Hao, Jinchao Liu, Yuanyuan Hui, Xinming Zhang, Yingrui Li, Caiyun Gou, Shengkai Pan, Jun Wang, Yue Cai, Yadan Luo, Zhaobao Wang, Rongjun He, Xiaoju Qian, Jinyang Zhao, Songbo Wang, Jiaohui Xu, Yongshan Lang, and Qingle Cai
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phylogeny ,Synteny ,Genome ,DNA sequencing ,Evolution, Molecular ,Open Reading Frames ,Species Specificity ,Phylogenetics ,Animals ,Passeriformes ,Selection, Genetic ,genome ,Gene ,Genetics ,Whole genome sequencing ,Base Sequence ,biology ,Altitude ,Research ,high-altitude adaptation ,Molecular Sequence Annotation ,Sequence Analysis, DNA ,biology.organism_classification ,Adaptation, Physiological ,Ground tit ,Evolutionary biology ,Adaptation - Abstract
Background: The mechanism of high-altitude adaptation has been studied in certain mammals. However, in avian species like the ground tit Pseudopodoces humilis, the adaptation mechanism remains unclear. The phylogeny of the ground tit is also controversial. Results: Using next generation sequencing technology, we generated and assembled a draft genome sequence of the ground tit. The assembly contained 1.04 Gb of sequence that covered 95.4% of the whole genome and had higher N50 values, at the level of both scaffolds and contigs, than other sequenced avian genomes. About 1.7 million SNPs were detected, 16,998 protein-coding genes were predicted and 7% of the genome was identified as repeat sequences. Comparisons between the ground tit genome and other avian genomes revealed a conserved genome structure and confirmed the phylogeny of ground tit as not belonging to the Corvidae family. Gene family expansion and positively selected gene analysis revealed genes that were related to cardiac function. Our findings contribute to our understanding of the adaptation of this species to extreme environmental living conditions. Conclusions: Our data and analysis contribute to the study of avian evolutionary history and provide new insights into the adaptation mechanisms to extreme conditions in animals.
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34. Correction: The genome sequence of the ground tit Pseudopodoces humilis provides insights into its adaptation to high altitude.
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Qingle Cai, Xiaoju Qian, Yongshan Lang, Yadan Luo, Jiaohui Xu, Shengkai Pan, Yuanyuan Hui, Caiyun Gou, Yue Cai, Meirong Hao, Jinyang Zhao, Songbo Wang, Zhaobao Wang, Xinming Zhang, Rongjun He, Jinchao Liu, Longhai Luo, Yingrui Li, and Jun Wang
- Published
- 2014
- Full Text
- View/download PDF
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