375 results on '"Jesse A Berlin"'
Search Results
2. Practical help for specifying the target difference in sample size calculations for RCTs: the DELTA2 five-stage study, including a workshop
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Jonathan A Cook, Steven A Julious, William Sones, Lisa V Hampson, Catherine Hewitt, Jesse A Berlin, Deborah Ashby, Richard Emsley, Dean A Fergusson, Stephen J Walters, Edward CF Wilson, Graeme MacLennan, Nigel Stallard, Joanne C Rothwell, Martin Bland, Louise Brown, Craig R Ramsay, Andrew Cook, David Armstrong, Douglas Altman, and Luke D Vale
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sample size ,research design ,minimal clinically important difference ,randomised controlled trials ,peer review ,Medical technology ,R855-855.5 - Abstract
Background: The randomised controlled trial is widely considered to be the gold standard study for comparing the effectiveness of health interventions. Central to its design is a calculation of the number of participants needed (the sample size) for the trial. The sample size is typically calculated by specifying the magnitude of the difference in the primary outcome between the intervention effects for the population of interest. This difference is called the ‘target difference’ and should be appropriate for the principal estimand of interest and determined by the primary aim of the study. The target difference between treatments should be considered realistic and/or important by one or more key stakeholder groups. Objective: The objective of the report is to provide practical help on the choice of target difference used in the sample size calculation for a randomised controlled trial for researchers and funder representatives. Methods: The Difference ELicitation in TriAls2 (DELTA2) recommendations and advice were developed through a five-stage process, which included two literature reviews of existing funder guidance and recent methodological literature; a Delphi process to engage with a wider group of stakeholders; a 2-day workshop; and finalising the core document. Results: Advice is provided for definitive trials (Phase III/IV studies). Methods for choosing the target difference are reviewed. To aid those new to the topic, and to encourage better practice, 10 recommendations are made regarding choosing the target difference and undertaking a sample size calculation. Recommended reporting items for trial proposal, protocols and results papers under the conventional approach are also provided. Case studies reflecting different trial designs and covering different conditions are provided. Alternative trial designs and methods for choosing the sample size are also briefly considered. Conclusions: Choosing an appropriate sample size is crucial if a study is to inform clinical practice. The number of patients recruited into the trial needs to be sufficient to answer the objectives; however, the number should not be higher than necessary to avoid unnecessary burden on patients and wasting precious resources. The choice of the target difference is a key part of this process under the conventional approach to sample size calculations. This document provides advice and recommendations to improve practice and reporting regarding this aspect of trial design. Future work could extend the work to address other less common approaches to the sample size calculations, particularly in terms of appropriate reporting items. Funding: Funded by the Medical Research Council (MRC) UK and the National Institute for Health Research as part of the MRC–National Institute for Health Research Methodology Research programme.
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- 2019
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3. Real-World Trends in the Evaluation of Medical Products
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Sean Hennessy and Jesse A Berlin
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Epidemiology - Abstract
There is a compelling need to evaluate the real-world health effects of medical products outside of tightly controlled preapproval clinical trials. This is done through pharmacoepidemiology, which is the study of the health effects of medical products (including drugs, biologicals, and medical devices and diagnostics) in populations, often using nonrandomized designs. Recent developments in pharmacoepidemiology span changes in the focus of research questions, research designs, data used, and statistical analysis methods. Developments in these areas are thought to improve the value of the evidence produced by such studies, and are prompting greater use of real-world evidence to inform clinical, regulatory, and reimbursement decisions.
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- 2022
4. The Use of Meta‐analysis in Pharmacoepidemiology
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Stephen J. W. Evans, H. Amy Xia, Jesse A. Berlin, and Brenda J. Crowe
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medicine.medical_specialty ,business.industry ,Rare events ,Medicine ,Publication bias ,Pharmacoepidemiology ,business ,Intensive care medicine ,Indirect comparison - Published
- 2021
5. Uncontrolled Extensions of Clinical Trials and the Use of External Controls—Scoping Opportunities and Methods
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Kourtney Davis, John D. Seeger, Almut G. Winterstein, Barry J. Gertz, Jie Li, Nancy C. Santanello, Wei Zhou, Ching-Yu Wang, Nancy A Dreyer, and Jesse A. Berlin
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Pharmacology ,Selection bias ,medicine.medical_specialty ,Databases, Factual ,business.industry ,media_common.quotation_subject ,Trial protocol ,Control Groups ,law.invention ,Clinical trial ,Bias ,Randomized controlled trial ,Risk Factors ,law ,Causal inference ,Propensity score matching ,medicine ,Humans ,Pharmacology (medical) ,Intensive care medicine ,business ,Real world data ,Randomized Controlled Trials as Topic ,media_common - Abstract
Increased interest in real-world evidence (RWE) for clinical and regulatory decision making and the need to evaluate long-term benefits and risks of pharmaceutical products raise the importance of understanding the use of external controls (ECs) for uncontrolled extensions of randomized controlled trials (RCTs). We searched clinicaltrials.gov from 2009 to 2019 for uncontrolled extensions and assessed the use of ECs in the trial protocol registry and PubMed. We present characteristics of identified uncontrolled extensions, their adoption of ECs, and a qualitative appraisal of published uncontrolled extensions with ECs according to good pharmacoepidemiologic practice. The number of uncontrolled extensions increased slightly across the study period, resulting in a total of 1,115 studies. Most originated from phase III RCTs (62.2%) and specified safety outcomes (61.9% among those with specified outcomes). Most uncontrolled extensions incorporated no control group with only 7 out of 1,115 (0.6%) employing ECs. For those studies with ECs, all involved treatments for rare conditions and assessment of effectiveness. Attempts to balance comparison groups varied from none mentioned to propensity score matching. We noted consistent deficiencies in outcome ascertainment methods and approaches to address attrition bias. The contrast of the large and growing number of uncontrolled extensions with the small number of studies that utilized ECs showed clear opportunities for enhancement in design, measurement, and analysis of uncontrolled extensions to allow causal inferences on long-term treatment effects. As extensions continue to expand within RWE regulatory frameworks, development of guidelines for use of EC with uncontrolled extensions is needed.
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- 2021
6. Selecting an Optimal Design for a Non-randomized Comparative Study: A Comment on 'Some Considerations on Design and Analysis Plan on a Nonrandomized Comparative Study Utilizing Propensity Score Methodology for Medical Device Premarket Evaluation.'
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Guy Cafri, Jesse A. Berlin, Paul Coplan, and Shumin Zhang
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Statistics and Probability ,Optimal design ,medicine.medical_specialty ,Medical device ,Computer science ,Propensity score matching ,medicine ,Pharmaceutical Science ,Medical physics ,Plan (drawing) - Abstract
Prospectively designed studies that make use of real-world data (RWD) are increasingly being used for studies with regulatory implications, including both premarket and post-market studies, aided b...
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- 2021
7. Comparative Effectiveness of Famotidine in Hospitalized COVID-19 Patients
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Stephen Fortin, Azza Shoaibi, Rachel Weinstein, Jesse A. Berlin, and Patrick B. Ryan
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Adult ,Male ,medicine.medical_specialty ,Adolescent ,Cohort Studies ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,medicine ,Humans ,Survival analysis ,Aged ,Retrospective Studies ,Aged, 80 and over ,Hepatology ,business.industry ,Incidence (epidemiology) ,Hazard ratio ,Gastroenterology ,COVID-19 ,Retrospective cohort study ,Hydroxychloroquine ,Middle Aged ,Famotidine ,COVID-19 Drug Treatment ,Hospitalization ,Treatment Outcome ,030220 oncology & carcinogenesis ,Propensity score matching ,Population study ,Female ,030211 gastroenterology & hepatology ,business ,medicine.drug ,Cohort study - Abstract
BackgroundFamotidine has been posited as a potential treatment for COVID-19. We compared the incidence of COVID-19 outcomes (i.e., death; and death or intensive services use) among hospitalized famotidine users vs. proton pump inhibitors (PPIs) users, hydroxychloroquine users or famotidine non-users separately.MethodsWe constructed a retrospective cohort study using data from COVID-19 Premier Hospital electronic health records. Study population were COVID-19 hospitalized patients aged 18 years or older. Famotidine, PPI and hydroxychloroquine exposure groups were defined as patients dispensed any medication containing one of the three drugs on the day of admission. The famotidine non-user group was derived from the same source population with no history of exposure to any drug with famotidine as an active ingredient prior to or on the day of admission. Time-at-risk was defined based on the intention-to-treat principle starting 1 day after admission to 30 days after admission. For each study comparison group, we fit a propensity score (PS) model through large-scale regularized B logistic regression. The outcome was modeled using a survival model.ResultsWe identified 2193 users of PPI, 5950 users of the hydroxychloroquine, 1816 users of famotidine and 26,820 non-famotidine users. After PS stratification, the hazard ratios for death were as follows: famotidine vs no famotidine HR 1.03 (0.89-1.18); vs PPIs: HR 1.14 (0.94-1.39); vs hydroxychloroquine:1.03 (0.85-1.24). Similar results were observed for the risk of death or intensive services use.ConclusionWe found no evidence of a reduced risk of COVID-19 outcomes among hospitalized COVID-19 patients who used famotidine compared to those who did not or compared to PPI or hydroxychloroquine users.
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- 2021
8. Methods for external control groups for single arm trials or long‐term uncontrolled extensions to randomized clinical trials
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John D. Seeger, Nancy C. Santanello, Wei Zhou, Almut G. Winterstein, Michelle R. Iannacone, Barry J. Gertz, Nancy A Dreyer, Kourtney Davis, and Jesse A. Berlin
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medicine.medical_specialty ,pharmacoepidemiology ,real world data (RWD) ,Epidemiology ,Population ,Context (language use) ,single‐arm RCT ,external control ,030226 pharmacology & pharmacy ,law.invention ,03 medical and health sciences ,0302 clinical medicine ,Physical medicine and rehabilitation ,Randomized controlled trial ,Bias ,law ,Medicine ,Humans ,Pharmacology (medical) ,long‐term extension (LTE) ,030212 general & internal medicine ,Information bias ,education ,Randomized Controlled Trials as Topic ,education.field_of_study ,business.industry ,Pharmacoepidemiology ,Control Groups ,Clinical trial ,Identification (information) ,Inclusion and exclusion criteria ,business ,Research Article - Abstract
Purpose Clinical trials compare outcomes among patients receiving study treatment with comparators drawn from the same source. These internal controls are missing in single arm trials and from long‐term extensions (LTE) of trials including only the treatment arm. An external control group derived from a different setting is then required to assess safety or effectiveness. Methods We present examples of external control groups that demonstrate some of the issues that arise and make recommendations to address them through careful assessment of the data source fitness for use, design, and analysis steps. Results Inclusion and exclusion criteria and context that produce a trial population may result in trial patients with different clinical characteristics than are present in an external comparison group. If these differences affect the risk of outcomes, then a comparison of outcome occurrence will be confounded. Further, patients who continue into LTE may differ from those initially entering the trial due to treatment effects. Application of appropriate methods is needed to make valid inferences when such treatment or selection effects are present. Outcome measures in a trial may be ascertained and defined differently from what can be obtained in an external comparison group. Differences in sensitivity and specificity for identification or measurement of study outcomes leads to information bias that can also invalidate inferences. Conclusion This review concentrates on threats to the valid use of external control groups both in the scenarios of single arm trials and LTE of randomized controlled trials, along with methodological approaches to mitigate them.
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- 2020
9. Channeling Bias in the Analysis of Risk of Myocardial Infarction, Stroke, Gastrointestinal Bleeding, and Acute Renal Failure with the Use of Paracetamol Compared with Ibuprofen
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Jesse A. Berlin, Rachel B. Weinstein, Patrick B. Ryan, Martijn J. Schuemie, Joel N. Swerdel, and Daniel Fife
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Adult ,Male ,medicine.medical_specialty ,Matching (statistics) ,Adolescent ,Drug-Related Side Effects and Adverse Reactions ,Myocardial Infarction ,Ibuprofen ,Toxicology ,030226 pharmacology & pharmacy ,Cohort Studies ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,Bias ,Risk Factors ,Internal medicine ,medicine ,Humans ,Pharmacology (medical) ,Original Research Article ,030212 general & internal medicine ,Propensity Score ,Stroke ,Acetaminophen ,Aged ,Aged, 80 and over ,Pharmacology ,business.industry ,Anti-Inflammatory Agents, Non-Steroidal ,Confounding ,Hazard ratio ,Acute Kidney Injury ,Middle Aged ,medicine.disease ,United Kingdom ,Confidence interval ,Propensity score matching ,Cardiology ,Female ,Observational study ,Gastrointestinal Hemorrhage ,business ,medicine.drug - Abstract
Introduction Observational studies estimating severe outcomes for paracetamol versus ibuprofen use have acknowledged the specific challenge of channeling bias. A previous study relying on negative controls suggested that using large-scale propensity score (LSPS) matching may mitigate bias better than models using limited lists of covariates. Objective The aim was to assess whether using LSPS matching would enable the evaluation of paracetamol, compared to ibuprofen, and increased risk of myocardial infarction, stroke, gastrointestinal (GI) bleeding, or acute renal failure. Study design and setting In a new-user cohort study, we used two propensity score model strategies for confounder controls. One replicated the approach of controlling for a hand-picked list. The second used LSPSs based on all available covariates for matching. Positive and negative controls assessed residual confounding and calibrated confidence intervals. The data source was the Clinical Practices Research Datalink (CPRD). Results A substantial proportion of negative controls were statistically significant after propensity score matching on the publication covariates, indicating considerable systematic error. LSPS adjustment was less biased, but residual error remained. The calibrated estimates resulted in very wide confidence intervals, indicating large uncertainty in effect estimates once residual error was incorporated. Conclusions For paracetamol versus ibuprofen, when using LSPS methods in the CPRD, it is only possible to distinguish true effects if those effects are large (hazard ratio > 2). Due to their smaller hazard ratios, the outcomes under study cannot be differentiated from null effects (represented by negative controls) even if there were a true effect. Based on these data, we conclude that we are unable to determine whether paracetamol is associated with an increased risk of myocardial infarction, stroke, GI bleeding, and acute renal failure compared to ibuprofen, due to residual confounding. Electronic supplementary material The online version of this article (10.1007/s40264-020-00950-3) contains supplementary material, which is available to authorized users.
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- 2020
10. Acute pancreatitis risk in type 2 diabetes patients treated with canagliflozin versus other antihyperglycemic agents: an observational claims database study
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Zhong Yuan, Rose Qiu, Amy Freedman, James Weaver, Lu Wang, Laura Hester, Jesse A. Berlin, Frank J. DeFalco, Joel N. Swerdel, Patrick B. Ryan, Jacqueline Yee, Norman Rosenthal, Martijn J. Schuemie, and Gary Meininger
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Adult ,Male ,medicine.medical_specialty ,Adolescent ,Type 2 diabetes ,030204 cardiovascular system & hematology ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,medicine ,Humans ,Hypoglycemic Agents ,030212 general & internal medicine ,Canagliflozin ,Sodium-Glucose Transporter 2 Inhibitors ,Aged ,Retrospective Studies ,Aged, 80 and over ,Proportional hazards model ,business.industry ,Hazard ratio ,Type 2 Diabetes Mellitus ,General Medicine ,Middle Aged ,medicine.disease ,Clinical trial ,Diabetes Mellitus, Type 2 ,Pancreatitis ,Propensity score matching ,Female ,Observational study ,business ,medicine.drug - Abstract
Objective: Observational evidence suggests that patients with type 2 diabetes mellitus (T2DM) are at increased risk for acute pancreatitis (AP) versus those without T2DM. A small number of AP events were reported in clinical trials of the sodium glucose co-transporter 2 inhibitor canagliflozin, though no imbalances were observed between treatment groups. This observational study evaluated risk of AP among new users of canagliflozin compared with new users of six classes of other antihyperglycemic agents (AHAs). Methods: Three US claims databases were analyzed based on a prespecified protocol approved by the European Medicines Agency. Propensity score adjustment controlled for imbalances in baseline covariates. Cox regression models estimated the hazard ratio of AP with canagliflozin compared with other AHAs using on-treatment (primary) and intent-to-treat approaches. Sensitivity analyses assessed robustness of findings. Results: Across the three databases, there were between 12,023–80,986 new users of canagliflozin; the unadjusted incidence rates of AP (per 1000 person-years) were between 1.5–2.2 for canagliflozin and 1.1–6.6 for other AHAs. The risk of AP was generally similar for new users of canagliflozin compared with new users of glucagon-like peptide-1 receptor agonists, dipeptidyl peptidase-4 inhibitors, sulfonylureas, thiazolidinediones, insulin, and other AHAs, with no consistent between-treatment differences observed across databases. Intent-to-treat and sensitivity analysis findings were qualitatively consistent with on-treatment findings. Conclusions: In this large observational study, incidence rates of AP in patients with T2DM treated with canagliflozin or other AHAs were generally similar, with no evidence suggesting that canagliflozin is associated with increased risk of AP compared with other AHAs.
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- 2020
11. Peer Review in a General Medical Research Journal Before and During the COVID-19 Pandemic
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Roy H. Perlis, Jacob Kendall-Taylor, Kamber Hart, Ishani Ganguli, Jesse A. Berlin, Steven M. Bradley, Sebastien Haneuse, Sharon K. Inouye, Elizabeth A. Jacobs, Arden Morris, Olugbenga Ogedegbe, Eli Perencevich, Lawrence N. Shulman, N. Seth Trueger, Stephan D. Fihn, Frederick P. Rivara, and Annette Flanagin
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General Medicine - Abstract
ImportanceAlthough peer review is an important component of publication for new research, the viability of this process has been questioned, particularly with the added stressors of the COVID-19 pandemic.ObjectiveTo characterize rates of peer reviewer acceptance of invitations to review manuscripts, reviewer turnaround times, and editor-assessed quality of reviews before and after the start of the COVID-19 pandemic at a large, open-access general medical journal.Design, Setting, and ParticipantsThis retrospective, pre-post cohort study examined all research manuscripts submitted to JAMA Network Open between January 1, 2019, and June 29, 2021, either directly or via transfer from other JAMA Network journals, for which at least 1 peer review of manuscript content was solicited. Measures were compared between the period before the World Health Organization declaration of a COVID-19 pandemic on March 11, 2020 (14.3 months), and the period during the pandemic (15.6 months) among all reviewed manuscripts and between pandemic-period manuscripts that did or did not address COVID-19.Main Outcomes and MeasuresFor each reviewed manuscript, the number of invitations sent to reviewers, proportions of reviewers accepting invitations, time in days to return reviews, and editor-assessed quality ratings of reviews were determined.ResultsIn total, the journal sought review for 5013 manuscripts, including 4295 Original Investigations (85.7%) and 718 Research Letters (14.3%); 1860 manuscripts were submitted during the prepandemic period and 3153 during the pandemic period. Comparing the prepandemic with the pandemic period, the mean (SD) number of reviews rated as high quality (very good or excellent) per manuscript increased slightly from 1.3 (0.7) to 1.5 (0.7) (P P Conclusions and RelevanceIn this cohort study, the speed and editor-reported quality of peer reviews in an open-access general medical journal improved modestly during the initial year of the pandemic. Additional study will be necessary to understand how the pandemic has affected reviewer burden and fatigue.
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- 2023
12. Learning from electronic health records across multiple sites: A communication-efficient and privacy-preserving distributed algorithm
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Mary Regina Boland, John H. Holmes, Christopher B. Forrest, Haitao Chu, Rui Duan, Martijn J. Schuemie, Jesse A. Berlin, Christopher H. Schmid, Yong Chen, Zixuan Liu, Hua Xu, Yue Liu, Jason H. Moore, and Howard H. Chang
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Data Analysis ,Drug-Related Side Effects and Adverse Reactions ,Computer science ,Datasets as Topic ,Health Informatics ,Research and Applications ,Logistic regression ,03 medical and health sciences ,0302 clinical medicine ,Pregnancy ,Statistics ,Odds Ratio ,Electronic Health Records ,Humans ,Computer Simulation ,030212 general & internal medicine ,Fetal Death ,030304 developmental biology ,0303 health sciences ,Estimator ,Regression analysis ,Gold standard (test) ,Logistic Models ,Efficiency ,Standard error ,Distributed algorithm ,Female ,Likelihood function ,Algorithms ,Confidentiality - Abstract
Objectives We propose a one-shot, privacy-preserving distributed algorithm to perform logistic regression (ODAL) across multiple clinical sites. Materials and Methods ODAL effectively utilizes the information from the local site (where the patient-level data are accessible) and incorporates the first-order (ODAL1) and second-order (ODAL2) gradients of the likelihood function from other sites to construct an estimator without requiring iterative communication across sites or transferring patient-level data. We evaluated ODAL via extensive simulation studies and an application to a dataset from the University of Pennsylvania Health System. The estimation accuracy was evaluated by comparing it with the estimator based on the combined individual participant data or pooled data (ie, gold standard). Results Our simulation studies revealed that the relative estimation bias of ODAL1 compared with the pooled estimates was Conclusions This study demonstrates that ODAL is privacy-preserving and communication-efficient with small bias and high statistical efficiency.
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- 2019
13. Challenges of evaluating and modelling vaccination in emerging infectious diseases
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Natalie E. Dean, Kourtney Davis, M. Elizabeth Halloran, Zachary J. Madewell, Jesse A. Berlin, Paul Coplan, and Claudio J. Struchiner
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Emerging infectious diseases ,2019-20 coronavirus outbreak ,U.S. FDA, United States Food and Drug Administration ,Coronavirus disease 2019 (COVID-19) ,Epidemiology ,Computer science ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Efficacy trial ,Vaccine Efficacy ,Preventive vaccines ,Infectious and parasitic diseases ,RC109-216 ,Microbiology ,Communicable Diseases, Emerging ,Article ,Virology ,DCT, Decentralized Clinical Trial ,SAR, secondary attack rate ,Humans ,VEi, vaccine efficacy for infectiousness ,Mathematical modelling ,SARS-CoV-2 ,Vaccination ,Public Health, Environmental and Occupational Health ,Outbreak ,COVID-19 ,Vaccine efficacy ,Clinical trial ,Infectious Diseases ,Risk analysis (engineering) ,Infectious disease (medical specialty) ,PMA, prospective meta-analysis ,Parasitology ,U.S. CDC, United States Centers for Disease Control and Prevention ,EUA, Emergency Use Authorization - Abstract
Outbreaks of emerging pathogens pose unique methodological and practical challenges for the design, implementation, and evaluation of vaccine efficacy trials. Lessons learned from COVID-19 highlight the need for innovative and flexible study design and application to quickly identify promising candidate vaccines. Trial design strategies should be tailored to the dynamics of the specific pathogen, location of the outbreak, and vaccine prototypes, within the regional socioeconomic constraints. Mathematical and statistical models can assist investigators in designing infectious disease clinical trials. We introduce key challenges for planning, evaluating, and modelling vaccine efficacy trials for emerging pathogens.
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- 2021
14. Advancing the Real-World Evidence for Medical Devices through Coordinated Registry Networks
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Art Sedrakyan, Danica Marinac-Dabic, Bruce Campbell, Suvekshya Aryal, Courtney E Baird, Philip Goodney, Jack L Cronenwett, Adam W Beck, Elizabeth W Paxton, Jim Hu, Ralph Brindis, Kevin Baskin, Terrie Cowley, Jeffery Levy, David S Liebeskind, Benjamin K Poulose, Charles R Rardin, Frederic S Resnic, James Tcheng, Benjamin Fisher, Charles Viviano, Vincent Devlin, Murray Sheldon, Jens Eldrup-Jorgensen, Jesse A Berlin, Joseph Drozda, Michael E Matheny, Sanket S Dhruva, Timothy Feeney, Kristi Mitchell, and Gregory Pappas
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device surveillance ,and evaluation ,access ,health care quality ,device safety ,Biomedical Engineering ,Surgery ,Generic health relevance ,real world evidence ,health technology - Abstract
ObjectivesGenerating and using real-world evidence (RWE) is a pragmatic solution for evaluating health technologies. RWE is recognized by regulators, health technology assessors, clinicians, and manufacturers as a valid source of information to support their decision-making. Well-designed registries can provide RWE and become more powerful when linked with electronic health records and administrative databases in coordinated registry networks (CRNs). Our objective was to create a framework of maturity of CRNs and registries, so guiding their development and the prioritization of funding.Design, setting, and participantsWe invited 52 stakeholders from diverse backgrounds including patient advocacy groups, academic, clinical, industry and regulatory experts to participate on a Delphi survey. Of those invited, 42 participated in the survey to provide feedback on the maturity framework for CRNs and registries. An expert panel reviewed the responses to refine the framework until the target consensus of 80% was reached. Two rounds of the Delphi were distributed via Qualtrics online platform from July to August 2020 and from October to November 2020.Main outcome measuresConsensus on the maturity framework for CRNs and registries consisted of seven domains (unique device identification, efficient data collection, data quality, product life cycle approach, governance and sustainability, quality improvement, and patient-reported outcomes), each presented with five levels of maturity.ResultsOf 52 invited experts, 41 (79.9%) responded to round 1; all 41 responded to round 2; and consensus was reached for most domains. The expert panel resolved the disagreements and final consensus estimates ranged from 80.5% to 92.7% for seven domains.ConclusionsWe have developed a robust framework to assess the maturity of any CRN (or registry) to provide reliable RWE. This framework will promote harmonization of approaches to RWE generation across different disciplines and health systems. The domains and their levels may evolve over time as new solutions become available.
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- 2021
15. 919Step-by-step guidance on prospective meta-analyses
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Kylie E Hunter, Saskia Cheyne, Anna Lene Seidler, Davina Ghersi, Jesse A. Berlin, and Lisa M. Askie
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medicine.medical_specialty ,Epidemiology ,Expert opinion ,medicine ,Medical physics ,General Medicine ,Publication bias ,Psychology - Abstract
Focus of Presentation In a prospective meta-analysis (PMA), studies are included before their results are known. This can reduce risk of publication bias and selective outcome reporting, and enables researchers to harmonise their research efforts. Despite rising numbers, there is little guidance on how to conduct PMA. We, the Cochrane PMA Methods Group, developed step-by-step guidance based on a scoping review, and expert opinions and experiences. Each step is illustrated with a recent case study. Findings We describe seven steps for conducting PMA. After developing a protocol (Steps 1), a systematic search for eligible planned/ongoing studies should be conducted, including a search of registries, medical databases and contacting stakeholders (Step 2-3). These studies are then invited to form a collaboration (Step 4), ideally including a steering and data analysis committee. Next, important study features such as common core outcomes and confounders are agreed upon (Step 5). This reduces heterogeneity and increases the number of available outcomes for meta-analysis. Certainty of evidence is assessed by adapting tools such as GRADE (Step 6). Results should be reported using adapted versions of reporting tools such as PRISMA (Step 7). Conclusions/Implications PMA reduce many problems of traditional retrospective systematic reviews and meta-analysis. Updated guidance and recent technical advances will help increase their numbers further. Key messages PMA are ‘next generation systematic reviews’ that allow for greatly improved use of data, whilst reducing bias and research waste. This step-by-step guidance will enable more researchers to conduct successful PMA.
- Published
- 2021
16. Comment on: Risk of major adverse cardiovascular events in patients initiating biologics/apremilast for psoriatic arthritis: a nationwide cohort study
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Robert Y, Suruki, Rishi J, Desai, Kourtney J, Davis, Jesse A, Berlin, and Joshua J, Gagne
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Cohort Studies ,Biological Products ,Rheumatology ,Cardiovascular Diseases ,Anti-Inflammatory Agents, Non-Steroidal ,Arthritis, Psoriatic ,Humans ,Psoriasis ,Pharmacology (medical) ,Thalidomide - Published
- 2022
17. Safety Evaluation in Clinical Trials
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Amy H. Xia, Brenda J. Crowe, and Jesse A. Berlin
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Clinical trial ,medicine.medical_specialty ,business.industry ,medicine ,Intensive care medicine ,business - Published
- 2021
18. Prospective approaches to accumulating evidence
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Lisa M. Askie, Jesse A. Berlin, James Thomas, Julian P T Higgins, Julian Elliott, Davina Ghersi, Mark Simmonds, Yemisi Takwoingi, and Jayne F. Tierney
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medicine.medical_specialty ,Systematic review ,Randomized controlled trial ,law ,business.industry ,Physical therapy ,medicine ,business ,Confidence interval ,law.invention ,Statistical hypothesis testing - Published
- 2019
19. Diabetic ketoacidosis in patients with type 2 diabetes treated with sodium glucose co‐transporter 2 inhibitors versus other antihyperglycemic agents: An observational study of four US administrative claims databases
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Don Sun, Patrick B. Ryan, Erica A. Voss, Jesse A. Berlin, Frank J. DeFalco, Joan Lind, Norman Rosenthal, Gary Meininger, Laura Hester, Zhong Yuan, Amy Freedman, Lu Wang, Maria Alba, James Weaver, and Martijn J. Schuemie
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Blood Glucose ,Male ,Databases, Factual ,endocrine system diseases ,Diabetic ketoacidosis ,Epidemiology ,Type 2 diabetes ,computer.software_genre ,Lower risk ,030226 pharmacology & pharmacy ,Glucagon-Like Peptide-1 Receptor ,Diabetic Ketoacidosis ,03 medical and health sciences ,0302 clinical medicine ,Risk Factors ,Diabetes mellitus ,Original Reports ,medicine ,Original Report ,Humans ,Insulin ,Pharmacology (medical) ,030212 general & internal medicine ,Sodium-Glucose Transporter 2 Inhibitors ,Aged ,Type 1 diabetes ,Database ,business.industry ,Incidence ,Hazard ratio ,nutritional and metabolic diseases ,Type 2 Diabetes Mellitus ,SGLT2 inhibitor ,Middle Aged ,medicine.disease ,Metformin ,United States ,Sulfonylurea Compounds ,Diabetes Mellitus, Type 2 ,Female ,type 2 diabetes ,business ,Administrative Claims, Healthcare ,computer ,medicine.drug - Abstract
Purpose To compare the incidence of diabetic ketoacidosis (DKA) among patients with type 2 diabetes mellitus (T2DM) who were new users of sodium glucose co‐transporter 2 inhibitors (SGLT2i) versus other classes of antihyperglycemic agents (AHAs). Methods Patients were identified from four large US claims databases using broad (all T2DM patients) and narrow (intended to exclude patients with type 1 diabetes or secondary diabetes misclassified as T2DM) definitions of T2DM. New users of SGLT2i and seven groups of comparator AHAs were matched (1:1) on exposure propensity scores to adjust for imbalances in baseline covariates. Cox proportional hazards regression models, conditioned on propensity score‐matched pairs, were used to estimate hazard ratios (HRs) of DKA for new users of SGLT2i versus other AHAs. When I2
- Published
- 2019
20. Keeping Meta-analyses Fresh
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Jesse A, Berlin, Gordon D, Rubenfeld, Roisin E, O'Cearbhaill, Amy Sanghavi, Shah, and Stephan D, Fihn
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Meta-Analysis as Topic ,Humans ,General Medicine - Published
- 2022
21. Letter to the editor concerning the article: 'Comparative safety and benefit-risk profile of biologics and oral treatments for moderate-to-severe plaque psoriasis: A network meta-analysis of clinical trial data'
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Michael Plotnick, Jesse A. Berlin, Dan Pettitt, and Lloyd S. Miller
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Plaque psoriasis ,Moderate to severe ,medicine.medical_specialty ,Biological Products ,Letter to the editor ,business.industry ,Network Meta-Analysis ,Antibodies, Monoclonal ,Comparative safety ,Dermatology ,medicine.disease ,Risk profile ,Clinical trial ,Psoriasis ,Meta-analysis ,medicine ,Humans ,business - Published
- 2021
22. Signal Detection and Methodological Limitations in a Real-World Registry: Learnings from the Evaluation of Long-Term Safety Analyses in PSOLAR
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Steven Fakharzadeh, Alice B. Gottlieb, Bruce Strober, Jesse A. Berlin, Kim A. Papp, Jonathan Uy, Richard G. Langley, Emily S. Brouwer, Robert Bissonnette, Wayne Langholff, Craig L. Leonardi, Kim Parnell Lafferty, Andrew Greenspan, and David M. Pariser
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medicine.medical_specialty ,MEDLINE ,Toxicology ,030226 pharmacology & pharmacy ,03 medical and health sciences ,0302 clinical medicine ,Ustekinumab ,Medicine ,Humans ,Psoriasis ,Pharmacology (medical) ,030212 general & internal medicine ,Registries ,Original Research Article ,Pharmacology ,Biological Products ,business.industry ,Proportional hazards model ,Hazard ratio ,Adalimumab ,Confidence interval ,Infliximab ,Observational Studies as Topic ,Emergency medicine ,Propensity score matching ,Observational study ,business ,Mace ,medicine.drug - Abstract
Introduction Psoriasis Longitudinal Assessment and Registry (PSOLAR) was designed in 2007 as the first disease-based registry for patients with psoriasis. Objective The aim of this study was to discuss methodological limitations and post hoc analyses in long-term safety registries using learnings from analyses of a potential safety risk for major adverse cardiovascular events (MACE) in PSOLAR. Methods PSOLAR is an international observational study of over 12,000 psoriasis patients that was conducted to meet postmarketing safety commitments for infliximab and ustekinumab. A recent annual review of registry data indicated a potential MACE risk for ustekinumab vs. non-biologics based on prespecified COX model regression analyses, which yielded an adjusted hazard ratio (HR) of 1.533 (95% confidence interval [CI] 1.103–2.131). Therefore, we conducted a comprehensive review of key statistical methodology and implemented post hoc analytical methods to address specific limitations. Results The following limiting factors were identified: (1) inclusion of both prevalent and incident (new) users of biologics; (2) unanticipated imbalances in patient characteristics between treatment cohorts at baseline; (3) limited availability of relevant clinical data after enrollment; and (4) divergence of characteristics associated with outcomes among comparator groups over time. The analysis was modified to include only incident users, propensity scores were used to weight HRs, and adalimumab was deemed a more clinically appropriate comparator. The revised HR was 0.820 (95% CI 0.532–1.265), indicating no meaningful increase in MACE risk for ustekinumab. Conclusion Our results, which do not support a causal association between ustekinumab exposure and MACE risk, underscore the need for ongoing assessment of analytical methods in long-term observational studies.
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- 2021
23. Prospective meta‐analyses and Cochrane's role in embracing next‐generation methodologies
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Lisa M. Askie, Saskia Cheyne, Jesse A. Berlin, Kylie E Hunter, Anna Lene Seidler, and Davina Ghersi
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Research Report ,medicine.medical_specialty ,Meta-Analysis as Topic ,business.industry ,Family medicine ,Level data ,medicine ,MEDLINE ,Pharmacology (medical) ,Cochrane Library ,business ,Publication Bias ,Systematic Reviews as Topic - Abstract
Cochrane systematic reviews and meta-analyses are regarded as the ‘gold standard’ for high-quality information and are widely used to inform healthcare policy and practice. The nature of how conventional systematic reviews are conceived and conducted after at least some of the included studies are completed means that reviewers can inadvertently introduce bias when faced with heterogeneous studies that cannot be easily synthesized. Prospective meta-analysis (PMA) is now gaining traction as a means of reducing research waste and producing meaningful and less biased evidence syntheses. PMA has been lauded as a ‘next- generation’ method, and Ioannidis has argued that “all primary original research may be designed, executed, and interpreted as prospective meta-analysis”.
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- 2020
24. Review for 'Body mass index and risk of COVID-19 across ethnic groups: analysis of UK Biobank study'
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Jesse A. Berlin
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Coronavirus disease 2019 (COVID-19) ,business.industry ,Ethnic group ,Medicine ,business ,Body mass index ,Biobank ,Demography - Published
- 2020
25. Learning from local to global - an efficient distributed algorithm for modeling time-to-event data
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Hua Xu, C Jason Liang, Mary Regina Boland, Chongliang Luo, Yong Chen, Howard H. Chang, Jason H. Moore, Jesse A. Berlin, Jian-Guo Bian, Martijn J. Schuemie, Jiayi Tong, Kevin B. Mahoney, Christopher B. Forrest, Rui Duan, John H. Holmes, and Sally C. Morton
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Adult ,Male ,Time Factors ,Datasets as Topic ,Health Informatics ,Research and Applications ,01 natural sciences ,010104 statistics & probability ,03 medical and health sciences ,0302 clinical medicine ,Bias ,Statistics ,Rare events ,Electronic Health Records ,Humans ,Computer Simulation ,030212 general & internal medicine ,0101 mathematics ,Aged ,Proportional Hazards Models ,Mathematics ,Event (probability theory) ,Likelihood Functions ,Models, Statistical ,Proportional hazards model ,Hazard ratio ,Estimator ,Middle Aged ,Sample size determination ,Distributed algorithm ,Sample Size ,Meta-analysis ,Female ,Likelihood function ,Algorithms - Abstract
Objective We developed and evaluated a privacy-preserving One-shot Distributed Algorithm to fit a multicenter Cox proportional hazards model (ODAC) without sharing patient-level information across sites. Materials and Methods Using patient-level data from a single site combined with only aggregated information from other sites, we constructed a surrogate likelihood function, approximating the Cox partial likelihood function obtained using patient-level data from all sites. By maximizing the surrogate likelihood function, each site obtained a local estimate of the model parameter, and the ODAC estimator was constructed as a weighted average of all the local estimates. We evaluated the performance of ODAC with (1) a simulation study and (2) a real-world use case study using 4 datasets from the Observational Health Data Sciences and Informatics network. Results On the one hand, our simulation study showed that ODAC provided estimates nearly the same as the estimator obtained by analyzing, in a single dataset, the combined patient-level data from all sites (ie, the pooled estimator). The relative bias was Conclusions ODAC is a privacy-preserving and noniterative method for implementing time-to-event analyses across multiple sites. It provides estimates on par with the pooled estimator and substantially outperforms the meta-analysis estimator when the event is uncommon, making it extremely suitable for studying rare events and diseases in a distributed manner.
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- 2020
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26. Designing, Conducting, Monitoring, and Analyzing Data from Pragmatic Randomized Clinical Trials: Proceedings from a Multi-stakeholder Think Tank Meeting
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Keri L. Monda, Jeffrey S. Riesmeyer, Ricardo Dent, Robert A. Scott, Manisha Desai, Robert LoCasale, Jesse A. Berlin, Joanne Waldstreicher, Jyothis T. George, Cherie Binns, Thomas Hucko, Debbe McCall, Jack Mardekian, Lothar Roessig, Govinda Weerakkody, Harald Siedentop, Stefan Hantel, Shun Fu Lee, Andrea J. Cook, Lin Wang, Tomas Andersson, Adrian F. Hernandez, Carolyn Arias, Denise Esserman, Frank W. Rockhold, Susan S. Ellenberg, Sharon-Lise T. Normand, Mark J. Cziraky, Matthew T. Roe, Lesley H. Curtis, Andrew Emmett, Trevor A. Lentz, Naeem D. Khan, David Martin, Patrick J. Heagerty, and Myles Wolf
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Process management ,Computer science ,Best practice ,030226 pharmacology & pharmacy ,01 natural sciences ,law.invention ,010104 statistics & probability ,03 medical and health sciences ,Patient safety ,0302 clinical medicine ,Randomized controlled trial ,law ,Data integrity ,Health care ,Humans ,Pharmacology (medical) ,0101 mathematics ,Pharmacology, Toxicology and Pharmaceutics (miscellaneous) ,Randomized Controlled Trials as Topic ,business.industry ,Public Health, Environmental and Occupational Health ,Clinical trial ,Research Design ,Data quality ,Professional association ,Patient Safety ,business - Abstract
In late 2018, the Food and Drug Administration (FDA) outlined a framework for evaluating the possible use of real-world evidence (RWE) to support regulatory decision-making. This framework was created to facilitate studies that would generate high-quality RWE, including pragmatic clinical trials (PCTs), which are randomized trials designed to inform clinical or policy decisions by assessing the real-world effectiveness of an intervention. There is general agreement among experts that the use of existing healthcare and patient-generated data holds promise for making randomized trials more efficient, less costly, and more generalizable. Yet the benefits of relying on real-world data sources must be weighed against difficulties with ensuring data integrity and completeness. Additionally, appropriately monitoring patient safety in randomized trials of new drugs using healthcare system data that might not be available in real time can be quite difficult. Recognizing that these and other concerns are critical to the development and acceptability of PCTs, a group of stakeholders from academia, industry, professional organizations, regulatory bodies, government agencies, and patient advocates discussed a path forward for PCT growth and sustainability at a think tank meeting entitled "Monitoring and Analyzing Data from Pragmatic Streamlined Randomized Clinical Trials," which took place in January 2019 (Washington, DC). The goals of this meeting were to: (1) evaluate study design and methodological options specific to PCTs that have the potential to yield high-quality evidence; (2) discuss best practices to ensure data quality in PCTs; and (3) identify appropriate methods for study monitoring. Proceedings from the think tank meeting are summarized in this manuscript.
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- 2020
27. A guide to prospective meta-analysis
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Kylie E Hunter, Lisa M. Askie, Jesse A. Berlin, Davina Ghersi, Saskia Cheyne, and Anna Lene Seidler
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Computer science ,media_common.quotation_subject ,MEDLINE ,Guidelines as Topic ,General Medicine ,030204 cardiovascular system & hematology ,03 medical and health sciences ,0302 clinical medicine ,Meta-Analysis as Topic ,Risk analysis (engineering) ,Data Interpretation, Statistical ,Meta-analysis ,Humans ,Quality (business) ,Prospective Studies ,030212 general & internal medicine ,Prospective cohort study ,Research question ,Systematic Reviews as Topic ,media_common - Abstract
In a prospective meta-analysis (PMA), study selection criteria, hypotheses, and analyses are specified before the results of the studies related to the PMA research question are known, reducing many of the problems associated with a traditional (retrospective) meta-analysis. PMAs have many advantages: they can help reduce research waste and bias, and they are adaptive, efficient, and collaborative. Despite an increase in the number of health research articles labelled as PMAs, the methodology remains rare, novel, and often misunderstood. This paper provides detailed guidance on how to address the key elements for conducting a high quality PMA with a case study to illustrate each step.
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- 2020
28. Methodological challenges in indirect treatment comparisons
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Arun Singh, Edward Kim, Annette Wooller, Ibrahim Turkoz, Jennifer Kern-Sliwa, Jesse A. Berlin, Maju Mathews, and Srihari Gopal
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Oncology ,Paliperidone Palmitate ,medicine.medical_specialty ,Relative efficacy ,business.industry ,Treatment outcome ,medicine.disease ,030227 psychiatry ,03 medical and health sciences ,Psychiatry and Mental health ,0302 clinical medicine ,Long acting ,Tolerability ,Schizophrenia ,Indirect Treatment ,Internal medicine ,medicine ,Pharmacology (medical) ,Aripiprazole ,business ,030217 neurology & neurosurgery ,medicine.drug - Abstract
In a recent study, an indirect treatment comparison was performed to examine the relative efficacy and tolerability of aripiprazole once monthly and paliperidone palmitate once monthly. The authors concluded that the results may suggest relative advantages for aripiprazole once monthly over paliperi
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- 2018
29. Comparative effectiveness of canagliflozin, SGLT2 inhibitors and non‐SGLT2 inhibitors on the risk of hospitalization for heart failure and amputation in patients with type 2 diabetes mellitus: A real‐world meta‐analysis of 4 observational databases (OBSERVE‐4D)
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Frank J. DeFalco, Martijn J. Schuemie, John B. Buse, Paul E. Stang, Zhong Yuan, Patrick B. Ryan, Norman Rosenthal, and Jesse A. Berlin
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Adult ,Male ,medicine.medical_specialty ,Adolescent ,Endocrinology, Diabetes and Metabolism ,medicine.medical_treatment ,030209 endocrinology & metabolism ,Type 2 diabetes ,030204 cardiovascular system & hematology ,Amputation, Surgical ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,Endocrinology ,Risk Factors ,Internal medicine ,Diabetes mellitus ,Internal Medicine ,medicine ,Humans ,Canagliflozin ,Sodium-Glucose Transporter 2 Inhibitors ,Aged ,Retrospective Studies ,Aged, 80 and over ,Heart Failure ,business.industry ,Type 2 Diabetes Mellitus ,Middle Aged ,medicine.disease ,Diabetic Foot ,3. Good health ,Hospitalization ,Observational Studies as Topic ,Treatment Outcome ,Databases as Topic ,Diabetes Mellitus, Type 2 ,Amputation ,Meta-analysis ,Heart failure ,Female ,Observational study ,business ,Diabetic Angiopathies ,medicine.drug - Abstract
Sodium glucose co-transporter 2 inhibitors (SGLT2i) are indicated for treatment of type 2 diabetes mellitus (T2DM); some SGLT2i have reported cardiovascular benefit, and some have reported risk of below-knee lower extremity (BKLE) amputation. This study examined the real-world comparative effectiveness within the SGLT2i class and compared with non-SGLT2i antihyperglycaemic agents.Data from 4 large US administrative claims databases were used to characterize risk and provide population-level estimates of canagliflozin's effects on hospitalization for heart failure (HHF) and BKLE amputation vs other SGLT2i and non-SGLT2i in T2DM patients. Comparative analyses using a propensity score-adjusted new-user cohort design examined relative hazards of outcomes across all new users and a subpopulation with established cardiovascular disease.Across the 4 databases (142 800 new users of canagliflozin, 110 897 new users of other SGLT2i, 460 885 new users of non-SGLT2i), the meta-analytic hazard ratio estimate for HHF with canagliflozin vs non-SGLT2i was 0.39 (95% CI, 0.26-0.60) in the on-treatment analysis. The estimate for BKLE amputation with canagliflozin vs non-SGLT2i was 0.75 (95% CI, 0.40-1.41) in the on-treatment analysis and 1.01 (95% CI, 0.93-1.10) in the intent-to-treat analysis. Effects in the subpopulation with established cardiovascular disease were similar for both outcomes. No consistent differences were observed between canagliflozin and other SGLT2i.In this large comprehensive analysis, canagliflozin and other SGLT2i demonstrated HHF benefits consistent with clinical trial data, but showed no increased risk of BKLE amputation vs non-SGLT2i. HHF and BKLE amputation results were similar in the subpopulation with established cardiovascular disease. This study helps further characterize the potential benefits and harms of SGLT2i in routine clinical practice to complement evidence from clinical trials and prior observational studies.
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- 2018
30. A systematic assessment of the epidemiologic literature regarding an association between acetaminophen exposure and cancer
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Anne Hermanowski-Vosatka, Raymark Salonga, Gary Eichenbaum, Martijn J. Schuemie, Patrick B. Ryan, Amisha M. Parikh-Das, Evren Atillasoy, Rachel B. Weinstein, and Jesse A. Berlin
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medicine.medical_specialty ,business.industry ,digestive, oral, and skin physiology ,Cancer ,Hazard potential ,General Medicine ,Disease ,Analgesics, Non-Narcotic ,Toxicology ,medicine.disease ,Models, Biological ,Acetaminophen ,Causality ,Neoplasms ,Recall bias ,Epidemiology ,medicine ,Humans ,Antipyretic ,Exposure measurement ,Intensive care medicine ,business ,medicine.drug - Abstract
Introduced in the 1950s, acetaminophen is one of the most widely used antipyretics and analgesics worldwide. In 1999, the International Agency for Research on Cancer (IARC) reviewed the epidemiologic studies of acetaminophen and the data were judged to be “inadequate” to conclude that it is carcinogenic. In 2019 the California Office of Environmental Health Hazard Assessment initiated a review process on the carcinogenic hazard potential of acetaminophen. To inform this review process, the authors performed a comprehensive literature search and identified 136 epidemiologic studies, which for most cancer types suggest no alteration in risk associated with acetaminophen use. For 3 cancer types, renal cell, liver, and some forms of lymphohematopoietic, some studies suggest an increased risk; however, multiple factors unique to acetaminophen need to be considered to determine if these results are real and clinically meaningful. The objective of this publication is to analyze the results of these epidemiologic studies using a framework that accounts for the inherent challenge of evaluating acetaminophen, including, broad population-wide use in multiple disease states, challenges with exposure measurement, protopathic bias, channeling bias, and recall bias. When evaluated using this framework, the data do not support a causal association between acetaminophen use and cancer.
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- 2021
31. Evaluating the Value of a New Prediction Model for Gastric Cancer
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Daniel V. Catenacci and Jesse A. Berlin
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Oncology ,medicine.medical_specialty ,Internal medicine ,medicine ,Cancer ,General Medicine ,medicine.disease ,Value (mathematics) ,Mathematics - Published
- 2021
32. Risk of lower extremity amputations in people with type 2 diabetes mellitus treated with sodium-glucose co-transporter-2 inhibitors in the USA: A retrospective cohort study
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Mehul Desai, Zhong Yuan, Paul E. Stang, Frank J. DeFalco, Norm Rosenthal, Patrick B. Ryan, Martijn J. Schuemie, and Jesse A. Berlin
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Male ,medicine.medical_specialty ,Endocrinology, Diabetes and Metabolism ,medicine.medical_treatment ,Population ,030209 endocrinology & metabolism ,Type 2 diabetes ,030204 cardiovascular system & hematology ,Amputation, Surgical ,03 medical and health sciences ,0302 clinical medicine ,Endocrinology ,Risk Factors ,Internal medicine ,Internal Medicine ,medicine ,Humans ,Hypoglycemic Agents ,Canagliflozin ,education ,Sodium-Glucose Transporter 2 Inhibitors ,health care economics and organizations ,Retrospective Studies ,Leg ,education.field_of_study ,Proportional hazards model ,business.industry ,Incidence (epidemiology) ,Hazard ratio ,SGLT2 inhibitor ,Retrospective cohort study ,Original Articles ,Middle Aged ,medicine.disease ,United States ,Surgery ,Diabetes Mellitus, Type 2 ,Amputation ,Original Article ,Female ,type 2 diabetes ,business ,Diabetic Angiopathies ,medicine.drug - Abstract
Aims To examine the incidence of amputation in patients with type 2 diabetes mellitus (T2DM) treated with sodium glucose co‐transporter 2 (SGLT2) inhibitors overall, and canagliflozin specifically, compared with non‐SGLT2 inhibitor antihyperglycaemic agents (AHAs). Materials and Methods Patients with T2DM newly exposed to SGLT2 inhibitors or non‐SGLT2 inhibitor AHAs were identified using the Truven MarketScan database. The incidence of below‐knee lower extremity (BKLE) amputation was calculated for patients treated with SGLT2 inhibitors, canagliflozin, or non‐SGLT2 inhibitor AHAs. Patients newly exposed to canagliflozin and non‐SGLT2 inhibitor AHAs were matched 1:1 on propensity scores, and a Cox proportional hazards model was used for comparative analysis. Negative controls (outcomes not believed to be associated with any AHA) were used to calibrate P values. Results Between April 1, 2013 and October 31, 2016, 118 018 new users of SGLT2 inhibitors, including 73 024 of canagliflozin, and 226 623 new users of non‐SGLT2 inhibitor AHAs were identified. The crude incidence rates of BKLE amputation were 1.22, 1.26 and 1.87 events per 1000 person‐years with SGLT2 inhibitors, canagliflozin and non‐SGLT2 inhibitor AHAs, respectively. For the comparative analysis, 63 845 new users of canagliflozin were matched with 63 845 new users of non‐SGLT2 inhibitor AHAs, resulting in well‐balanced baseline covariates. The incidence rates of BKLE amputation were 1.18 and 1.12 events per 1000 person‐years with canagliflozin and non‐SGLT2 inhibitor AHAs, respectively; the hazard ratio was 0.98 (95% confidence interval 0.68–1.41; P = .92, calibrated P = .95). Conclusions This real‐world study observed no evidence of increased risk of BKLE amputation for new users of canagliflozin compared with non‐SGLT2 inhibitor AHAs in a broad population of patients with T2DM.
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- 2017
33. Channeling in the Use of Nonprescription Paracetamol and Ibuprofen in an Electronic Medical Records Database: Evidence and Implications
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Martijn J. Schuemie, Jesse A. Berlin, Rachel B. Weinstein, Daniel Fife, Kayur Patel, Amy Matcho, Patrick B. Ryan, and Joel N. Swerdel
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Adult ,Male ,medicine.medical_specialty ,Adolescent ,Databases, Factual ,media_common.quotation_subject ,Ibuprofen ,Nonprescription Drugs ,030204 cardiovascular system & hematology ,Pharmacology ,Toxicology ,Cohort Studies ,03 medical and health sciences ,Young Adult ,0302 clinical medicine ,Bias ,Internal medicine ,Medicine ,Adverse Drug Reaction Reporting Systems ,Electronic Health Records ,Humans ,Pharmacology (medical) ,030212 general & internal medicine ,Original Research Article ,Propensity Score ,media_common ,Acetaminophen ,Aged ,Selection bias ,Aged, 80 and over ,Analgesics ,business.industry ,Confounding ,Middle Aged ,United Kingdom ,Relative risk ,Cohort ,Propensity score matching ,Observational study ,Female ,business ,Gastrointestinal Hemorrhage ,medicine.drug ,Cohort study - Abstract
Introduction Over-the-counter analgesics such as paracetamol and ibuprofen are among the most widely used, and having a good understanding of their safety profile is important to public health. Prior observational studies estimating the risks associated with paracetamol use acknowledge the inherent limitations of these studies. One threat to the validity of observational studies is channeling bias, i.e. the notion that patients are systematically exposed to one drug or the other, based on current and past comorbidities, in a manner that affects estimated relative risk. Objectives The aim of this study was to examine whether evidence of channeling bias exists in observational studies that compare paracetamol with ibuprofen, and, if so, the extent to which confounding adjustment can mitigate this bias. Study Design and Setting In a cohort of 140,770 patients, we examined whether those who received any paracetamol (including concomitant users) were more likely to have prior diagnoses of gastrointestinal (GI) bleeding, myocardial infarction (MI), stroke, or renal disease than those who received ibuprofen alone. We compared propensity score distributions between drugs, and examined the degree to which channeling bias could be controlled using a combination of negative control disease outcome models and large-scale propensity score matching. Analyses were conducted using the Clinical Practice Research Datalink. Results The proportions of prior MI, GI bleeding, renal disease, and stroke were significantly higher in those prescribed any paracetamol versus ibuprofen alone, after adjusting for sex and age. We were not able to adequately remove selection bias using a selected set of covariates for propensity score adjustment; however, when we fit the propensity score model using a substantially larger number of covariates, evidence of residual bias was attenuated. Conclusions Although using selected covariates for propensity score adjustment may not sufficiently reduce bias, large-scale propensity score matching offers a novel approach to consider to mitigate the effects of channeling bias. Electronic supplementary material The online version of this article (doi:10.1007/s40264-017-0581-7) contains supplementary material, which is available to authorized users.
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- 2017
34. Choosing the target difference (‘effect size’) for a randomised controlled trial - DELTA2 guidance protocol
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Lisa V. Hampson, Stephen J Walters, Martin Bland, Dean Fergusson, Steven A. Julious, Jesse A. Berlin, Craig R Ramsay, Richard Emsley, Doug G Altman, William Sones, Jonathan Cook, Catherine Hewitt, Joanne C. Rothwell, and Luke Vale
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medicine.medical_specialty ,Delphi method ,Medicine (miscellaneous) ,Effect size ,Target difference ,Statistical power ,law.invention ,03 medical and health sciences ,0302 clinical medicine ,Randomized controlled trial ,law ,medicine ,Pharmacology (medical) ,Medical physics ,030212 general & internal medicine ,Pilot study ,Protocol (science) ,Estimation ,Randomised controlled trial ,lcsh:R5-920 ,business.industry ,Sample size ,030503 health policy & services ,Stakeholder ,3. Good health ,Sample size determination ,Clinically important difference ,Guidance ,Patient representatives ,0305 other medical science ,business ,lcsh:Medicine (General) - Abstract
Background: A key step in the design of a randomised controlled trial (RCT) is the estimation of the number of participants needed. By far the most common approach is to specify a target difference and then estimate the corresponding sample size; this sample size is chosen to provide reassurance that the trial will have high statistical power to detect such a difference between the randomised groups (at the planned statistical significance level). The sample size has many implications for the conduct of the study, as well as carrying scientific and ethical aspects to its choice. Despite the critical role of the target difference for the primary outcome in the design of an RCT, the manner in which it is determined has received little attention. This article reports the protocol of the Difference ELicitation in TriAls (DELTA2) project, which will produce guidance on the specification and reporting of the target difference for the primary outcome in a sample size calculation for RCTs. Methods/design: The DELTA2 project has five components: systematic literature reviews of recent methodological developments (stage 1) and existing funder guidance (stage 2); a Delphi study (stage 3); a 2-day consensus meeting bringing together researchers, funders and patient representatives, as well as one-off engagement sessions at relevant stakeholder meetings (stage 4); and the preparation and dissemination of a guidance document (stage 5). Discussion: Specification of the target difference for the primary outcome is a key component of the design of an RCT. There is a need for better guidance for researchers and funders regarding specification and reporting of this aspect of trial design. The aim of this project is to produce consensus based guidance for researchers and funders.
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- 2017
35. Quality of meta-analyses for randomized trials in the field of hypertension
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Jesse A. Berlin, Danwen Yang, William J. Elliott, Hiwot Ayele, William J. Kostis, Tanveer Singh, George C. Roush, Morakinyo Araoye, Brigani Amante, and John B. Kostis
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Research Report ,medicine.medical_specialty ,Physiology ,030204 cardiovascular system & hematology ,law.invention ,03 medical and health sciences ,0302 clinical medicine ,Meta-Analysis as Topic ,Randomized controlled trial ,law ,Internal medicine ,Internal Medicine ,medicine ,Humans ,030212 general & internal medicine ,Randomized Controlled Trials as Topic ,Impact factor ,business.industry ,Publication bias ,Evidence-based medicine ,Odds ratio ,Guideline ,Confidence interval ,Clinical trial ,Hypertension ,Journal Impact Factor ,Cardiology and Cardiovascular Medicine ,business - Abstract
OBJECTIVES Doubling on average every 6 years, hypertension-related meta-analyses are now published twice weekly and are often considered the highest level of evidence for clinical practice. However, some hypertension specialists and guideline authors view meta-analyses with skepticism. This article evaluates the quality of hypertension-related meta-analyses of clinical trials. METHODS A systematic search was conducted for meta-analyses of clinical trials recently published over 3.3 years. Specific criteria reproducibly assessed 26 features in the four domains of meta-analysis quality, domains justified by fundamental analytics and extensive research: analyzing trial quality, analyzing heterogeneity, analyzing publication bias, and providing transparency. RESULTS A total of 143 meta-analyses were identified. A total of 44% had 8+ deficient features with no relation to journal impact factor: odds ratio relating 8+ deficient features to the upper third versus lower third of impact factor = 1.3 (95% confidence limit 0.6-2.9). A total of 56% had all four domains deficient. Quality did not improve over time. Thirty articles (21%) reported statistically significant results (P
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- 2016
36. Practical help for specifying the target difference in sample size calculations for RCTs: the DELTA2 five-stage study, including a workshop
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Jesse A. Berlin, Deborah Ashby, Graeme MacLennan, Catherine Hewitt, Nigel Stallard, Douglas G. Altman, Edward C. F. Wilson, Craig R Ramsay, Steven A. Julious, Jonathan Cook, Lisa V. Hampson, Stephen J Walters, Richard Emsley, Joanne C. Rothwell, Martin Bland, Luke Vale, Dean Fergusson, Andrew Cook, David Armstrong, William Sones, and Louise Brown
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Research design ,medicine.medical_specialty ,lcsh:Medical technology ,Population ,Psychological intervention ,Delphi method ,randomised controlled trials ,01 natural sciences ,law.invention ,010104 statistics & probability ,03 medical and health sciences ,0302 clinical medicine ,Randomized controlled trial ,law ,Medicine ,Medical physics ,030212 general & internal medicine ,0101 mathematics ,education ,education.field_of_study ,business.industry ,Health Policy ,Minimal clinically important difference ,minimal clinically important difference ,research design ,R1 ,sample size ,lcsh:R855-855.5 ,Sample size determination ,Estimand ,business - Abstract
Background The randomised controlled trial is widely considered to be the gold standard study for comparing the effectiveness of health interventions. Central to its design is a calculation of the number of participants needed (the sample size) for the trial. The sample size is typically calculated by specifying the magnitude of the difference in the primary outcome between the intervention effects for the population of interest. This difference is called the ‘target difference’ and should be appropriate for the principal estimand of interest and determined by the primary aim of the study. The target difference between treatments should be considered realistic and/or important by one or more key stakeholder groups. Objective The objective of the report is to provide practical help on the choice of target difference used in the sample size calculation for a randomised controlled trial for researchers and funder representatives. Methods The Difference ELicitation in TriAls2 (DELTA2) recommendations and advice were developed through a five-stage process, which included two literature reviews of existing funder guidance and recent methodological literature; a Delphi process to engage with a wider group of stakeholders; a 2-day workshop; and finalising the core document. Results Advice is provided for definitive trials (Phase III/IV studies). Methods for choosing the target difference are reviewed. To aid those new to the topic, and to encourage better practice, 10 recommendations are made regarding choosing the target difference and undertaking a sample size calculation. Recommended reporting items for trial proposal, protocols and results papers under the conventional approach are also provided. Case studies reflecting different trial designs and covering different conditions are provided. Alternative trial designs and methods for choosing the sample size are also briefly considered. Conclusions Choosing an appropriate sample size is crucial if a study is to inform clinical practice. The number of patients recruited into the trial needs to be sufficient to answer the objectives; however, the number should not be higher than necessary to avoid unnecessary burden on patients and wasting precious resources. The choice of the target difference is a key part of this process under the conventional approach to sample size calculations. This document provides advice and recommendations to improve practice and reporting regarding this aspect of trial design. Future work could extend the work to address other less common approaches to the sample size calculations, particularly in terms of appropriate reporting items. Funding Funded by the Medical Research Council (MRC) UK and the National Institute for Health Research as part of the MRC–National Institute for Health Research Methodology Research programme.
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- 2019
37. Review for 'Incidence of lower extremity amputations among patients with type 1 and type 2 diabetes in the United States between 2010 and 2014'
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Jesse A. Berlin
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medicine.medical_specialty ,business.industry ,Internal medicine ,Incidence (epidemiology) ,medicine ,Type 2 diabetes ,medicine.disease ,business - Published
- 2019
38. 1546-P: Acute Pancreatitis (AP) with Canagliflozin (CANA) vs. Other Antihyperglycemic Agents (AHAs): An Observational Study
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Jacqueline Yee, Laura Hester, Rose Qiu, Jesse A. Berlin, Frank J. DeFalco, Joel N. Swerdel, Norm Rosenthal, Zhong Yuan, Amy Freedman, Patrick B. Ryan, Martijn J. Schuemie, Gary Meininger, and Lu Wang
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Canagliflozin ,Gerontology ,Proportional hazards model ,Endocrinology, Diabetes and Metabolism ,Hazard ratio ,Antihyperglycemic Agents ,Clinical trial ,Propensity score matching ,Internal Medicine ,medicine ,In patient ,Observational study ,Psychology ,medicine.drug - Abstract
Observational evidence suggests that patients with type 2 diabetes mellitus (T2DM) are at increased risk of AP. A small number of AP events were reported in clinical trials of the SGLT2 inhibitor CANA, with no imbalances noted between treatment groups. This observational study evaluated the risk of AP among new users of CANA vs. 6 classes of other AHAs. Three U.S. claims databases were analyzed based on a prespecified protocol approved by the European Medicines Agency. Propensity score adjustment controlled for imbalances in baseline covariates. Cox regression models were used to estimate the hazard ratio of AP with CANA vs. other AHAs using on-treatment and intent-to-treat (ITT) approaches. Sensitivity analyses assessed the robustness of study findings. Across the 3 databases, there were between 12,023 to 80,986 new users of CANA and the crude incidence rates of AP (events per 1000 person-years) were between 1.5 to 2.2 for CANA and 1.1 to 6.6 for other AHAs. AP risk in patients newly treated with CANA or other AHAs was generally similar (Table). Findings from the ITT approach and sensitivity analyses were qualitatively consistent with the on-treatment approach. In this large observational study, incidence rates of AP in patients with T2DM treated with CANA or other AHAs were generally similar, with no evidence to suggest that CANA is associated with an increased risk of AP compared with other AHAs. Disclosure Z. Yuan: Employee; Self; Janssen Research & Development. F. Defalco: Employee; Self; Janssen Research & Development. L. Wang: Employee; Self; Johnson & Johnson. L.L. Hester: Employee; Self; Janssen Research & Development. J.N. Swerdel: Employee; Self; Janssen Pharmaceuticals, Inc. A. Freedman: Employee; Self; Janssen Research & Development. P. Ryan: Employee; Self; Janssen Research & Development. M. Schuemie: Employee; Self; Janssen Research & Development. R. Qiu: Employee; Self; Janssen Research & Development. J. Yee: Employee; Self; Janssen Research & Development. G. Meininger: Employee; Self; Janssen Research & Development. J.A. Berlin: Employee; Self; Janssen Research & Development. Stock/Shareholder; Self; Janssen Research & Development. N. Rosenthal: Employee; Self; Janssen Research & Development. Funding Janssen Research & Development, LLC
- Published
- 2019
39. Abstract 24: Diabetic Ketoacidosis in Patients with Type 2 Diabetes Treated with Sodium Glucose Co-transporter 2 Inhibitors versus Other Antihyperglycemic Agents: An Observational Study of Four US Administrative Claims Databases
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Lu Wang, Jesse A. Berlin, Gary Meininger, Erica A. Voss, Joan Lind, Martijn J. Schuemie, Amy Freedman, Maria Alba, James Weaver, Norman Rosenthal, Don Sun, Laura Hester, Frank J. DeFalco, Patrick B. Ryan, and Zhong Yuan
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medicine.medical_specialty ,Diabetic ketoacidosis ,business.industry ,Sodium ,Antihyperglycemic Agents ,chemistry.chemical_element ,Type 2 diabetes ,medicine.disease ,Administrative claims ,chemistry ,Internal medicine ,Diabetes mellitus ,medicine ,Observational study ,In patient ,Cardiology and Cardiovascular Medicine ,business - Abstract
Introduction: Diabetic ketoacidosis (DKA) is a serious acute metabolic complication of diabetes. Rare DKA events have occurred in patients taking sodium glucose co-transporter 2 inhibitors (SGLT2i). This study evaluated the risk of DKA in patients with type 2 diabetes mellitus (T2DM) taking SGLT2i versus other antihyperglycemic agents (AHAs) in clinical practice. Methods: This study, per protocol reviewed and approved by the European Medicines Agency, identified patients from 4 large US claims databases using broad and narrow definitions of T2DM; the broad definition captured all patients with a T2DM diagnosis and the narrow definition was intended to exclude T1DM misclassified as T2DM. DKA was identified from diagnosis codes in inpatient or emergency room claims. Eligible new users of SGLT2i and 7 groups of AHA comparators were matched (1:1) on exposure propensity scores (PS) to adjust for imbalances in baseline covariates. Cox proportional hazard models conditioned on PS-matched pairs were used to estimate hazard ratios (HR) of DKA risk for new users of SGLT2i versus other AHAs. P values were calibrated using negative control outcomes to address potential residual bias. Pooled HRs were calculated when I 2 was Results: The number of new users of SGLT2i in each database ranged from 11,141 to 152,728 using the broad T2DM definition and from 7,779 to 130,708 using the narrow definition. Across databases, the unadjusted incidence rates of DKA (events per 1000 patient-years) ranged from 2.75 to 8.84 with SGLT2i and 1.38 to 15.82 with other AHAs using the broad T2DM definition and from 1.15 to 3.91 with SGLT2i and 0.75 to 7.94 with other AHAs using the narrow definition. Using the broad T2DM definition, a significantly increased risk of DKA was observed among new users of SGLT2i versus 5 groups of other AHAs; when using the narrow definition, an increased risk of DKA with SGLT2i was observed only compared with sulfonylureas ( Figure ). Conclusion: In this claims database study, an increased risk of DKA was observed for new users of SGLT2i versus new users of several non-SGLT2i AHAs when T2DM was defined broadly. When T2DM was defined narrowly to exclude possible misdiagnosed T1DM patients, an increased risk of DKA with SGLT2i was observed compared to sulfonylureas.
- Published
- 2019
40. A randomized trial provided new evidence on the accuracy and efficiency of traditional vs. electronically annotated abstraction approaches in systematic reviews
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Berry de Bruijn, Joseph K. Canner, Simona Carini, Christopher H. Schmid, Tianjing Li, Kay Dickersin, Wiley Chan, Jesse A. Berlin, Ian J. Saldanha, Bryant T Smith, Elizabeth J. Whamond, Vernal Branch, Byron C. Wallace, Susan Hutfless, Joseph Lau, Ida Sim, Sandra A. Walsh, M. Hassan Murad, and Jens Jap
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Epidemiology ,Computer science ,Abstracting and Indexing ,law.invention ,Odds ,03 medical and health sciences ,Random Allocation ,Young Adult ,0302 clinical medicine ,systematic review ,Randomized controlled trial ,law ,Statistics ,Odds Ratio ,Humans ,030212 general & internal medicine ,Abstraction ,Data abstraction ,Data collection ,Cross-Over Studies ,accuracy ,Data Collection ,software application ,Odds ratio ,Confidence interval ,Systematic review ,efficiency ,data abstraction ,randomized cross-over trial ,030217 neurology & neurosurgery ,Software ,Systematic Reviews as Topic - Abstract
Objectives Data Abstraction Assistant (DAA) is a software for linking items abstracted into a data collection form for a systematic review to their locations in a study report. We conducted a randomized cross-over trial that compared DAA-facilitated single-data abstraction plus verification (“DAA verification”), single data abstraction plus verification (“regular verification”), and independent dual data abstraction plus adjudication (“independent abstraction”). Study Design and Setting This study is an online randomized cross-over trial with 26 pairs of data abstractors. Each pair abstracted data from six articles, two per approach. Outcomes were the proportion of errors and time taken. Results Overall proportion of errors was 17% for DAA verification, 16% for regular verification, and 15% for independent abstraction. DAA verification was associated with higher odds of errors when compared with regular verification (adjusted odds ratio [OR] = 1.08; 95% confidence interval [CI]: 0.99–1.17) or independent abstraction (adjusted OR = 1.12; 95% CI: 1.03–1.22). For each article, DAA verification took 20 minutes (95% CI: 1–40) longer than regular verification, but 46 minutes (95% CI: 26 to 66) shorter than independent abstraction. Conclusion Independent abstraction may only be necessary for complex data items. DAA provides an audit trail that is crucial for reproducible research.
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- 2019
41. Quantifying bias in epidemiologic studies evaluating the association between acetaminophen use and cancer
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Patrick B. Ryan, Rachel B. Weinstein, Jesse A. Berlin, and Martijn J. Schuemie
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Databases, Factual ,Vulnerability ,010501 environmental sciences ,Toxicology ,030226 pharmacology & pharmacy ,01 natural sciences ,Odds ,Cohort Studies ,03 medical and health sciences ,0302 clinical medicine ,Bias ,Neoplasms ,Environmental health ,medicine ,Humans ,Association (psychology) ,Acetaminophen ,0105 earth and related environmental sciences ,Interpretability ,business.industry ,Confounding ,Cancer ,General Medicine ,Analgesics, Non-Narcotic ,medicine.disease ,Confidence interval ,Epidemiologic Studies ,Case-Control Studies ,Observational study ,business - Abstract
Many observational studies explore the association between acetaminophen and cancer, but known limitations such as vulnerability to channeling, protopathic bias, and uncontrolled confounding hamper the interpretability of results. To help understand the potential magnitude of bias, we identify key design choices in these observational studies and specify 10 study design variants that represent different combinations of these design choices. We evaluate these variants by applying them to 37 negative controls - outcome presumed not to be caused by acetaminophen - as well as 4 cancer outcomes in the Clinical Practice Research Datalink (CPRD) database. The estimated odds and hazards ratios for the negative controls show substantial bias in the evaluated design variants, with far fewer of the 95% confidence intervals containing 1 than the nominal 95% expected for negative controls. The effect-size estimates for the cancer outcomes are comparable to those observed for the negative controls. A comparison of exposed and unexposed reveals many differences at baseline for which most studies do not correct. We observe that the design choices made in many of the published observational studies can lead to substantial bias. Thus, caution in the interpretation of published studies of acetaminophen and cancer is recommended.
- Published
- 2021
42. STaRT-RWE: structured template for planning and reporting on the implementation of real world evidence studies
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Dorothee B. Bartels, Sebastian Schneeweiss, Simone P. Pinheiro, Peter Arlett, Lily G. Bessette, Jesse A. Berlin, Shirley V. Wang, Wei Hua, Yoshiaki Uyama, and Kristijan H. Kahler
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Research Report ,Process management ,Computer science ,MEDLINE ,030204 cardiovascular system & hematology ,Real world evidence ,03 medical and health sciences ,Patient safety ,0302 clinical medicine ,Outcome Assessment, Health Care ,Pragmatic Clinical Trials as Topic ,Humans ,Research Methods & Reporting ,Medical Informatics Applications ,030212 general & internal medicine ,Set (psychology) ,Reproducibility ,Evidence-Based Medicine ,Clinical study design ,Reproducibility of Results ,General Medicine ,Evidence-based medicine ,Treatment Outcome ,Research Design ,Key (cryptography) ,Patient Safety - Abstract
In alignment with the International Council of Harmonization’s strategic goals, a public-private consortium has developed a structured template for planning and reporting on the implementation of real world evidence (RWE) studies of the safety and effectiveness of treatments. The template serves as a guiding tool for designing and conducting reproducible RWE studies; set clear expectations for transparent communication of RWE methods; reduce misinterpretation of prose that lacks specificity; allow reviewers to quickly orient and find key information; and facilitate reproducibility, validity assessment, and evidence synthesis. The template is intended for use with studies of the effectiveness and safety of medical products and is compatible with multiple study designs, data sources, reporting guidelines, checklists, and bias assessment tools.
- Published
- 2021
43. Selecting and Integrating Data Sources in Benefit–Risk Assessment: Considerations and Future Directions
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Bennett Levitan, George Quartey, Jesse A. Berlin, Gary Eichenbaum, Christy Chuang-Stein, and Rachael L. DiSantostefano
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Statistics and Probability ,education.field_of_study ,Management science ,business.industry ,media_common.quotation_subject ,Population ,Pharmaceutical Science ,Sample (statistics) ,030204 cardiovascular system & hematology ,Dabigatran ,Clinical trial ,03 medical and health sciences ,0302 clinical medicine ,Risk analysis (engineering) ,medicine ,Table (database) ,Relevance (information retrieval) ,Observational study ,Quality (business) ,030212 general & internal medicine ,education ,business ,medicine.drug ,media_common - Abstract
A key challenge in benefit–risk (B-R) assessment of a medication is the multitude of data sources and the changing quality and relevance of these sources during the medication lifecycle. At the time of regulatory approval, B-R assessment is largely based on data from controlled clinical trials and preclinical studies. Following approval, data informing B-R accumulate in a broader, larger sample of subjects in clinical practice and post-approval studies, and it can be challenging to know how to appropriately aggregate and compare these datasets. In this article, we critically evaluate different data sources that may be used in B-R assessment, including controlled trials, observational data, and spontaneous reports. We demonstrate how these sources may be used to create an effects table (summary of evidence of key efficacy and safety data), using dabigatran, a nonvitamin K antagonist oral anticoagulant (NOAC), as a case example. We discuss how to compare quantitatively across studies when population...
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- 2016
44. PMD50 USING SOCIAL MEDIA TO CHARACTERIZE ADVERSE EVENTS: A CASE STUDY OF BREAST IMPLANT ILLNESS
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S. Shah, Jesse A. Berlin, J. Walcott, Paul Coplan, J. Canady, S. Safa, Sunil Gupta, R. Wixtrom, J. Wood, and S. Debnath
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medicine.medical_specialty ,business.industry ,law ,Health Policy ,Breast implant ,Public Health, Environmental and Occupational Health ,medicine ,Social media ,Intensive care medicine ,business ,Adverse effect ,law.invention - Published
- 2020
45. Overview and experience of the YODA Project with clinical trial data sharing after 5 years
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Stephen Bamford, Nihar R. Desai, Joseph S. Ross, Ginger M. Gamble, Sandra Morris, Richard Lehman, Jesse A. Berlin, Karla Childers, Richard Kuntz, Peter Lins, Jessica D. Ritchie, Cary P. Gross, Joanne Waldstreicher, and Harlan M. Krumholz
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Statistics and Probability ,Computer science ,Data generator ,030204 cardiovascular system & hematology ,Library and Information Sciences ,Article ,Education ,03 medical and health sciences ,Medical research ,0302 clinical medicine ,Humans ,030212 general & internal medicine ,Yoda ,Clinical Trials as Topic ,biology ,Information Dissemination ,biology.organism_classification ,Data science ,Research data ,Computer Science Applications ,Data sharing ,Clinical trial ,Open data ,Key (cryptography) ,Statistics, Probability and Uncertainty ,Information Systems - Abstract
The Yale University Open Data Access (YODA) Project has facilitated access to clinical trial data since 2013. The purpose of this article is to provide an overview of the Project, describe key decisions that were made when establishing data sharing policies, and suggest how our experience and the experiences of our first two data generator partners, Medtronic, Inc. and Johnson & Johnson, can be used to enhance other ongoing or future initiatives.
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- 2018
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46. DELTA2 guidance on choosing the target difference and undertaking and reporting the sample size calculation for a randomised controlled trial
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Jonathan Cook, Catherine Hewitt, Graeme MacLennan, Doug G Altman, William Sones, Jesse A. Berlin, Lisa V. Hampson, Joanne C. Rothwell, Stephen J Walters, Luke Vale, Richard Emsley, Deborah Ashby, David Armstrong, Edward C. F. Wilson, Craig R Ramsay, Martin Bland, Andrew Cook, Dean Fergusson, Louise Brown, Steven A. Julious, Nigel Stallard, Wilson, Ed [0000-0002-8369-1577], Apollo - University of Cambridge Repository, and Cook, Jonathan A [0000-0002-4156-6989]
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Research Report ,ESTIMANDS ,Delphi Technique ,Cost effectiveness ,Computer science ,Delphi method ,Medicine (miscellaneous) ,030204 cardiovascular system & hematology ,Research & Experimental Medicine ,01 natural sciences ,law.invention ,010104 statistics & probability ,0302 clinical medicine ,Randomized controlled trial ,law ,Pharmacology (medical) ,030212 general & internal medicine ,Randomized Controlled Trials as Topic ,CLINICALLY IMPORTANT DIFFERENCE ,lcsh:R5-920 ,General Medicine ,Medicine, Research & Experimental ,Number needed to treat ,Patient representatives ,lcsh:Medicine (General) ,Life Sciences & Biomedicine ,Numbers Needed To Treat ,medicine.medical_specialty ,MEDLINE ,Guidelines as Topic ,1102 Cardiovascular Medicine And Haematology ,Statistical power ,03 medical and health sciences ,General & Internal Medicine ,medicine ,Humans ,Research Methods & Reporting ,Medical physics ,0101 mathematics ,Estimation ,Science & Technology ,business.industry ,Patient Selection ,Methodology ,1103 Clinical Sciences ,R1 ,Clinical trial ,Cardiovascular System & Hematology ,Sample size determination ,Sample Size ,Key (cryptography) ,business - Abstract
Background This article on choosing the target difference for a randomised controlled trial (RCT) and undertaking and reporting the sample size calculation has been dual published in the BMJ and BMC Trials journals. A key step in the design of a RCT is the estimation of the number of participants needed in the study. The most common approach is to specify a target difference between the treatments for the primary outcome and then calculate the required sample size. The sample size is chosen to ensure that the trial will have a high probability (adequate statistical power) of detecting a target difference between the treatments should one exist. The sample size has many implications for the conduct and interpretation of the study. Despite the critical role that the target difference has in the design of a RCT, the way in which it is determined has received little attention. In this article, we summarise the key considerations and messages from new guidance for researchers and funders on specifying the target difference, and undertaking and reporting a RCT sample size calculation. Methods The DELTA2 (Difference ELicitation in TriAls) project comprised five major components: systematic literature reviews of recent methodological developments (stage 1) and existing funder guidance (stage 2); a Delphi study (stage 3); a two-day consensus meeting bringing together researchers, funders and patient representatives (stage 4); and the preparation and dissemination of a guidance document (stage 5). Results and Discussion The key messages from the DELTA2 guidance on specifying the target difference are presented. Recommendations for specifying the target difference and the subsequent reporting of the sample size calculation are provided.
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- 2018
47. Choosing the Target Difference (“effect size”) for a Randomised Controlled Trial - DELTA2 Guidance
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Deborah Ashby, Louise Brown, Catherine Hewitt, Graeme MacLennan, Andrew Cook, Martin Bland, Jesse A. Berlin, Dean Fergusson, Lisa V. Hampson, Stephen J Walters, William Sones, Edward C. F. Wilson, Craig R Ramsay, Richard Emsley, David Armstrong, Nigel Stallard, Steven A. Julious, Doug G Altman, Joanne C. Rothwell, Luke Vale, and Jonathan Cook
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medicine.medical_specialty ,Randomized controlled trial ,law ,business.industry ,Sample size determination ,Physical therapy ,medicine ,business ,law.invention - Abstract
The aim of this document is to provide practical guidance on the choice of target difference used in the sample size calculation of a randomised controlled trial (RCT). Guidance is provided with a definitive trial, one that seeks to provide a useful answer, in mind and not those of a more exploratory nature. The term “target difference” is taken throughout to refer to the difference that is used in the sample size calculation (the one that the study formally “targets”). Please see the glossary for definitions and clarification with regards other relevant concepts. In order to address the specification of the target difference, it is appropriate, and to some degree necessary, to touch on related statistical aspects of conducting a sample size calculation. Generally the discussion of other aspects and more technical details is kept to a minimum, with more technical aspects covered in the appendices and referencing of relevant sources provided for further reading.The main body of this guidance assumes a standard RCT design is used; formally, this can be described as a two-arm parallel-group superiority trial. Most RCTs test for superiority of the interventions, that is, whether or not one of the interventions is superior to the other (See Box 1 for a formal definition of superiority, and of the two most common alternative approaches). Some common alternative trial designs are considered in Appendix 3. Additionally, it is assumed in the main body of the text that the conventional (Neyman-Pearson) approach to the sample size calculation of an RCT is being used. Other approaches (Bayesian, precision and value of information) are briefly considered in Appendix 2 with reference to the specification of the target difference.
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- 2018
48. Canagliflozin (CANA) vs. Other Antihyperglycemic Agents on the Risk of Below-Knee Amputation (BKA) for Patients with T2DM—A Real-World Analysis of >700,000 U.S. Patients
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Jesse A. Berlin, Martijn J. Schuemie, Paul E. Stang, John B. Buse, Zhong Yuan, Norm Rosenthal, Frank J. DeFalco, and Patrick B. Ryan
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American diabetes association ,Canagliflozin ,medicine.medical_specialty ,Endocrinology, Diabetes and Metabolism ,Antihyperglycemic Agents ,03 medical and health sciences ,0302 clinical medicine ,030220 oncology & carcinogenesis ,Family medicine ,Propensity score matching ,Internal Medicine ,medicine ,Claims database ,Below knee amputation ,Outcomes research ,Translational science ,Psychology ,030217 neurology & neurosurgery ,medicine.drug - Abstract
Sodium glucose co-transporter 2 inhibitors (SGLT2i) are indicated for treatment of T2DM; some SGLT2i have reported a CV benefit and some reported a risk of BKA. U.S. claims databases were analyzed using a prespecified protocol to examine CANA-associated effects on BKA and hospitalization for heart failure (HHF) vs. other SGLT2i and non-SGLT2i. Analyses used a propensity score adjusted new user design with numerous sensitivity analyses. The 4 databases included 142K new users of CANA, 110K of other SGLT2i, and 460K of non-SGLT2i AHAs. Meta-analysis results are reported when heterogeneity across databases was not substantial (I2 Disclosure P. Ryan: Employee; Self; Janssen Research & Development, LLC. J.B. Buse: Other Relationship; Self; ADOCIA, AstraZeneca, Dexcom, Inc., Elcelyx Therapeutics, Inc., Eli Lilly and Company, Fractyl Laboratories, Inc., Intarcia Therapeutics, Inc., Lexicon Pharmaceuticals, Inc., Metavention, NovaTarg, Novo Nordisk A/S, Sanofi, VTV Therapeutics. Research Support; Self; Boehringer Ingelheim GmbH, Johnson & Johnson Services, Inc., Theracos, Inc.. Other Relationship; Self; Shenzhen Hightide Biopharmaceutical, Ltd.. Research Support; Self; National Heart, Lung, and Blood Institute, National Center for Advancing Translational Sciences. Other Relationship; Self; National Institute of Diabetes and Digestive and Kidney Diseases, American Diabetes Association. Research Support; Self; Patient-Centered Outcomes Research Institute. Other Relationship; Self; National Institute of Environmental Health Sciences. M. Schuemie: Employee; Self; Janssen Research & Development, LLC. F. Defalco: Employee; Self; Janssen Research & Development, LLC. Z. Yuan: Employee; Self; Janssen Research & Development, LLC. P. Stang: Employee; Self; Janssen Research & Development, LLC. J.A. Berlin: Employee; Self; Johnson & Johnson, LLC. N. Rosenthal: Employee; Self; Janssen Research & Development.
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- 2018
49. Comment on 'How pharmacoepidemiology networks can manage distributed analyses to improve replicability and transparency and minimize bias'
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Martijn J. Schuemie, Christian G. Reich, David Madigan, Patrick B. Ryan, Jesse A. Berlin, George Hripcsak, and Marc A. Suchard
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Bias ,Risk analysis (engineering) ,Epidemiology ,business.industry ,Pharmacoepidemiology ,Medicine ,Pharmacology (medical) ,business ,Transparency (behavior) - Published
- 2019
50. Guidelines for the Content of Statistical Analysis Plans in Clinical Trials
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Steff Lewis, Yolanda Barbachano, Douglas G. Altman, Paula R Williamson, Jesse A. Berlin, Alan A Montgomery, Carrol Gamble, Stephen Senn, Caroline J Doré, Deborah D. Stocken, Elizabeth Loder, Edmund Juszczak, Pilar Lim, Simon Day, and Ashma Krishan
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medicine.medical_specialty ,Delphi Technique ,Statistics as Topic ,MEDLINE ,Delphi method ,Guideline ,law.invention ,03 medical and health sciences ,0302 clinical medicine ,Statistical Analysis Plan ,Randomized controlled trial ,law ,Journal Article ,Medicine ,030212 general & internal medicine ,Clinical Trials as Topic ,business.industry ,Consolidated Standards of Reporting Trials ,Consensus Development Conference ,General Medicine ,Clinical trial ,Clinical research ,Editorial ,Family medicine ,Data Interpretation, Statistical ,business ,030217 neurology & neurosurgery - Abstract
Importance: While guidance on statistical principles for clinical trials exists, there is an absence of guidance covering the required content of statistical analysis plans (SAPs) to support transparency and reproducibility.Objective: To develop recommendations for a minimum set of items that should be addressed in SAPs for clinical trials, developed with input from statisticians, previous guideline authors, journal editors, regulators, and funders.Design: Funders and regulators (n = 39) of randomized trials were contacted and the literature was searched to identify existing guidance; a survey of current practice was conducted across the network of UK Clinical Research Collaboration–registered trial units (n = 46, 1 unit had 2 responders) and a Delphi survey (n = 73 invited participants) was conducted to establish consensus on SAPs. The Delphi survey was sent to statisticians in trial units who completed the survey of current practice (n = 46), CONSORT (Consolidated Standards of Reporting Trials) and SPIRIT (Standard Protocol Items: Recommendations for Interventional Trials) guideline authors (n = 16), pharmaceutical industry statisticians (n = 3), journal editors (n = 9), and regulators (n = 2) (3 participants were included in 2 groups each), culminating in a consensus meeting attended by experts (N = 12) with representatives from each group. The guidance subsequently underwent critical review by statisticians from the surveyed trial units and members of the expert panel of the consensus meeting (N = 51), followed by piloting of the guidance document in the SAPs of 5 trials.Findings: No existing guidance was identified. The registered trials unit survey (46 responses) highlighted diversity in current practice and confirmed support for developing guidance. The Delphi survey (54 of 73, 74% participants completing both rounds) reached consensus on 42% (n = 46) of 110 items. The expert panel (N = 12) agreed that 63 items should be included in the guidance, with an additional 17 items identified as important but may be referenced elsewhere. Following critical review and piloting, some overlapping items were combined, leaving 55 items.Conclusions and Relevance: Recommendations are provided for a minimum set of items that should be addressed and included in SAPs for clinical trials. Trial registration, protocols, and statistical analysis plans are critically important in ensuring appropriate reporting of clinical trials.
- Published
- 2017
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