17 results on '"Jennifer Ish"'
Search Results
2. Mental wellbeing among Hispanic female domestic cleaners
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Jennifer Ish, David Gimeno Ruiz de Porras, and Kristina W. Whitworth
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WHO-5 ,Mental health ,Informal employment ,Psychosocial stressors ,Worker wellbeing ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background The purpose of this study was to examine the mental wellbeing of self-employed, Hispanic female domestic cleaners in San Antonio, Texas. Methods We conducted a cross-sectional pilot study and administered a short questionnaire to 56 participants. Mental wellbeing was assessed using The World Health Organization Well-Being Index (WHO-5). We calculated the age-adjusted prevalence of poor mental wellbeing, both overall and stratified by socioeconomic, neighborhood, and health characteristics. Results Almost half of the participants screened positive for poor mental wellbeing (47.3%) with a mean WHO-5 score of 68.9 [standard error (SE) = 3.1]. We observed a high prevalence of poor mental wellbeing among participants with less than a high school education (56.0%), who worked less than 30 h per week (57.0%) and who sometimes or always felt unsafe at her cleaning job (69.1%). Conclusions Female domestic cleaners, particularly those who work in the informal sector, are an overburdened and understudied population. This is particularly true regarding their mental wellbeing, which has largely been considered as an afterthought in epidemiologic studies of cleaning workers in general. Our results suggest that this group of domestic cleaners faces several psychosocial stressors, both in and outside of the workplace, and may have a high risk of poor mental health outcomes.
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- 2020
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3. Maternal occupational exposures and fetal growth in a Spanish birth cohort.
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Jennifer Ish, David Gimeno Ruiz de Porras, Elaine Symanski, Ferran Ballester, Maribel Casas, George L Delclos, Mònica Guxens, Jesús Ibarluzea, Carmen Iñiguez, Loreto Santa-Marina, Michael D Swartz, and Kristina W Whitworth
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Medicine ,Science - Abstract
While the epidemiologic literature suggests certain maternal occupational exposures may be associated with reduced measures of size at birth, the occupational literature employing fetal biometry data to assess fetal growth is sparse. The present study examines associations between maternal occupational exposures and ultrasound-measured fetal growth. We included 1,739 singleton pregnancies from the INfancia y Medio Ambiente (INMA) project (2003-2008). At 32 weeks of pregnancy, interviewers ascertained mothers' employment status and assessed job-related physical loads, work schedules, and job strain during pregnancy. Job titles were linked to a job-exposure matrix to estimate exposure to 10 endocrine disrupting chemical (EDC) groups. We calculated z-scores from longitudinal growth curves representing trajectories from 0-12, 12-20 and 20-34 gestational weeks for abdominal circumference (AC), biparietal diameter (BPD), femur length (FL), and estimated fetal weight (EFW). Linear mixed models clustered by IMNA region (i.e., Gipuzkoa, Sabadell, Valencia) were used to examine associations between occupational exposures and fetal growth. Effect estimates are presented as percentage change in fetal growth. There was limited evidence of associations between work-related non-chemical stressors and fetal growth. We observed associations of similar magnitude between multiple EDC groups and decreased EFW trajectories during 20-34 gestational weeks (phthalates: -1.4% [-3.5, 0.6%]; alkylphenolic compounds (APCs): -1.1% [-2.3, 0.1%]; miscellaneous chemicals: -1.5% [-3.7, 0.8%]), while miscellaneous chemicals were associated with increased BPD from 12-20 weeks (2.1% [0.8, 3.5%]). Notably, 67% of women exposed to phthalates were hairdressers; 68% of women exposed to APCs worked as domestic cleaners. In conclusion, we found limited evidence that maternal occupational exposures impact fetal growth. Further research should consider the combined impact of multiple workplace exposures.
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- 2022
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- View/download PDF
4. Susceptible windows of exposure to fine particulate matter and fetal growth trajectories in the Spanish INMA (INfancia y Medio Ambiente) birth cohort
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Wei-Jen Chen, Alison M. Rector, Monica Guxens, Carmen Iniguez, Michael D. Swartz, Elaine Symanski, Jesús Ibarluzea, Albert Ambros, Marisa Estarlich, Aitana Lertxundi, Isolina Riano-Galán, Jordi Sunyer, Ana Fernandez-Somoano, Suneet P. Chauhan, Jennifer Ish, Kristina W. Whitworth, and Child and Adolescent Psychiatry / Psychology
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Air Pollutants ,PM(2.5) ,Air pollution ,Bayes Theorem ,Fetal growth ,PM2.5 ,Biochemistry ,Cohort Studies ,Fetal Development ,Susceptible windows ,Fetal Weight ,Pregnancy ,Maternal Exposure ,Humans ,Female ,Particulate Matter ,Birth Cohort ,General Environmental Science - Abstract
While prior studies report associations between fine particulate matter (PM2.5) exposure and fetal growth, few have explored temporally refined susceptible windows of exposure. We included 2328 women from the Spanish INMA Project from 2003 to 2008. Longitudinal growth curves were constructed for each fetus using ultrasounds from 12, 20, and 34 gestational weeks. Z-scores representing growth trajectories of biparietal diameter, femur length, abdominal circumference (AC), and estimated fetal weight (EFW) during early (0-12 weeks), mid- (12-20 weeks), and late (20-34 weeks) pregnancy were calculated. A spatio-temporal random forest model with back-extrapolation provided weekly PM2.5 exposure estimates for each woman during her pregnancy. Distributed lag non-linear models were implemented within the Bayesian hierarchical framework to identify susceptible windows of exposure for each outcome and cumulative effects [βcum, 95% credible interval (CrI)] were aggregated across adjacent weeks. For comparison, general linear models evaluated associations between PM2.5 averaged across multi-week periods (i.e., weeks 1-11, 12-19, and 20-33) and fetal growth, mutually adjusted for exposure during each period. Results are presented as %change in z-scores per 5 μg/m3 in PM2.5, adjusted for covariates. Weeks 1-6 [βcum = -0.77%, 95%CrI (-1.07%, -0.47%)] were identified as a susceptible window of exposure for reduced late pregnancy EFW while weeks 29-33 were positively associated with this outcome [βcum = 0.42%, 95%CrI (0.20%, 0.64%)]. A similar pattern was observed for AC in late pregnancy. In linear regression models, PM2.5 exposure averaged across weeks 1-11 was associated with reduced late pregnancy EFW and AC; but, positive associations between PM2.5 and EFW or AC trajectories in late pregnancy were not observed. PM2.5 exposures during specific weeks may affect fetal growth differentially across pregnancy and such associations may be missed by averaging exposure across multi-week periods, highlighting the importance of temporally refined exposure estimates when studying the associations of air pollution with fetal growth. This work was supported by grant R01ES028842 from the National Institutes of Health / National Institute of Environmental Health Sciences (NIH/ NIEHS); grants Red INMA G03/176, CB06/02/004; ISCIII-FEDER: PI03/1615, PI04/1509, PI04/1112, PI04/1931, PI04/2018, PI05/1079, PI05/1052, PI06/0867, PI06/1213, PI07/0314, PI09/02311, PI09/02647, PI11/01007, PI11/02591, PI11/02038, PI13/1944, PI13/2032, PI13/02429, PI14/00891, PI14/01687, PI16/1288, PI16/00118, PI17/00663, PI18/00909, PI18/01142, PI18/01237; Miguel Servet-FEDER CP11/00178, CP15/00025, CPII16/00051, CPII18/00018, and CP16/00128 from Instituto de Salud Carlos III, grant 1999SGR 00241 from Generalitat de Catalunya- CIRIT, grant FP7-ENV-2011 cod 282957 and HEALTH. 2010.2.4.5–1 from the EU Commission, Assistance Award No. R-82811201 from the Health Effects Institute, grant UGP 15-230, UGP-15-244, and UGP-15-249 from Generalitat Valenciana: FISABIO, grant 2005111093 from Alicia Koplowitz Foundation (2017), Department of Health of the Basque Government, grant DFG06/002 from the Provincial Government of Gipuzkoa, and annual agreements with the municipalities of the study area (Zumarraga, Urretxu, Legazpi, Azkoitia y Azpeitia y Beasain), Obra Social Cajastur/Fundación Liberbank, and Universidad de Oviedo. We also acknowledge support from the Spanish Ministry of Science and Innovation and the State Research Agency through the “Centro de Excelencia Severo Ochoa 2019–2023” Program (CEX2018-000806-S), and support from the Generalitat de Catalunya through the CERCA Program. KWW and ES were partially supported by the P30 Environmental Health Sciences Core Center grant P30ES030285 from the NIH/NIEHS and by funding from the NIH/National Institute on Minority Health and Health Disparities (NIMHD) under Award Number P50MD015496. JI was supported by the Intramural Research Program of the NIH, National Institute of Environmental Health Sciences.
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- 2023
5. Correction: Maternal occupational exposure to chemicals and child cognitive function
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Jennifer Ish, Elaine Symanski, David Gimeno Ruiz de Porras, Maribel Casas, George L. Delclos, Mònica Guxens, Jesús M. Ibarluzea, Carmen Iñiguez, Aitana Lertxundi, Marisa Rebagliato, Michael D. Swartz, and Kristina W. Whitworth
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Cognition ,Pregnancy ,Maternal Exposure ,Occupational Exposure ,Pediatrics, Perinatology and Child Health ,Solvents ,Humans ,Female ,Prospective Studies ,Endocrine Disruptors ,Pesticides ,Polycyclic Aromatic Hydrocarbons ,Article - Abstract
Limited data exist regarding child neurodevelopment in relation to maternal occupational exposure to endocrine-disrupting chemicals (EDCs).We included 1058 mother-child pairs from the INfancia y Medio Ambiente (INMA) project (2003-2008). Using a job-exposure matrix, exposure probability scores for ten EDC groups were assigned to each mother based on her longest held job during pregnancy. At the child's 5-year visit, the McCarthy Scales of Children's Abilities was administered, yielding the general cognitive index and scales for specific cognitive domains. We analyzed region-specific associations between EDC exposures and each outcome separately using adjusted linear regression and combined region-specific effect estimates using random-effects meta-analyses.Approximately 24% of women were exposed to at least one EDC group, but exposure to most individual EDC groups was low (5%). Maternal organic solvent exposure was associated with lower quantitative scores among children (-5.8 points, 95% confidence interval: -11.0, -0.5). Though statistically non-significant, exposures to polycyclic aromatic hydrocarbons, phthalates, alkylphenolic compounds, and miscellaneous chemicals were associated with poorer offspring performance for most or all cognitive domains.This study found limited evidence for a role of maternal occupational EDC exposures on child cognition. Further research is needed to better characterize exposures among pregnant workers.Using data from a prospective birth cohort, we help fill an important research gap regarding the potential consequences of work-related exposure to endocrine-disrupting chemicals (EDCs) among pregnant women on child neurodevelopment. We expand on existing literature-largely limited to pesticide and organic solvent exposures-by using a job-exposure matrix to estimate exposure to several EDC groups. We found limited evidence of an association between maternal occupational EDC exposure and children's overall cognition. We did observe specific associations between exposure to organic solvents and lower quantitative reasoning scores.
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- 2023
6. Maternal occupational exposure to chemicals and child cognitive function
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Jennifer Ish, Elaine Symanski, David Gimeno Ruiz de Porras, Maribel Casas, George L. Delclos, Mònica Guxens, Jesús M. Ibarluzea, Carmen Iñiguez, Aitana Lertxundi, Marisa Rebagliato, Michael D. Swartz, Kristina W. Whitworth, and Child and Adolescent Psychiatry / Psychology
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Pediatrics, Perinatology and Child Health ,Article - Abstract
Background: Limited data exist regarding child neurodevelopment in relation to maternal occupational exposure to endocrine-disrupting chemicals (EDCs). Methods: We included 1058 mother–child pairs from the INfancia y Medio Ambiente (INMA) project (2003–2008). Using a job-exposure matrix, exposure probability scores for ten EDC groups were assigned to each mother based on her longest held job during pregnancy. At the child’s 5-year visit, the McCarthy Scales of Children’s Abilities was administered, yielding the general cognitive index and scales for specific cognitive domains. We analyzed region-specific associations between EDC exposures and each outcome separately using adjusted linear regression and combined region-specific effect estimates using random-effects meta-analyses. Results: Approximately 24% of women were exposed to at least one EDC group, but exposure to most individual EDC groups was low (
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- 2022
7. Maternal occupational exposures and fetal growth in a Spanish birth cohort
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Jennifer Ish, David Gimeno Ruiz de Porras, Elaine Symanski, Ferran Ballester, Maribel Casas, George L. Delclos, Mònica Guxens, Jesús Ibarluzea, Carmen Iñiguez, Loreto Santa-Marina, Michael D. Swartz, Kristina W. Whitworth, Child and Adolescent Psychiatry / Psychology, European Commission, Ish, Jennifer, Gimeno Ruiz de Porras, David, Symanski, Elaine, Ballester Díez, Ferran, Casas Sanahuja, Maribel, Delclos, George L., Guxens Junyent, Mònica, Ibarluzea, Jesús, Iñiguez, Carmen, Santa Marina, Loreto, Swartz, Michael D., and Whitworth, Kristina W.
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Multidisciplinary ,Antigen-presenting cells ,Infant, Newborn ,Gestational Age ,Jobs ,occupational exposure ,Endocrine Disruptors ,Ultrasonography, Prenatal ,infant, newborn ,Fetal Development ,Phthalates ,Psychological stress ,Maternal Exposure ,Pregnancy ,maternal exposure ,Occupational Exposure ,Birth ,Cohort studies ,Birth Weight ,Humans ,Birth Cohort ,Female ,pregnancy ,Chemical disruption ,ultrasonography, prenatal - Abstract
While the epidemiologic literature suggests certain maternal occupational exposures may be associated with reduced measures of size at birth, the occupational literature employing fetal biometry data to assess fetal growth is sparse. The present study examines associations between maternal occupational exposures and ultrasound-measured fetal growth. We included 1,739 singleton pregnancies from the INfancia y Medio Ambiente (INMA) project (2003-2008). At 32 weeks of pregnancy, interviewers ascertained mothers' employment status and assessed job-related physical loads, work schedules, and job strain during pregnancy. Job titles were linked to a job-exposure matrix to estimate exposure to 10 endocrine disrupting chemical (EDC) groups. We calculated z-scores from longitudinal growth curves representing trajectories from 0-12, 12-20 and 20-34 gestational weeks for abdominal circumference (AC), biparietal diameter (BPD), femur length (FL), and estimated fetal weight (EFW). Linear mixed models clustered by IMNA region (i.e., Gipuzkoa, Sabadell, Valencia) were used to examine associations between occupational exposures and fetal growth. Effect estimates are presented as percentage change in fetal growth. There was limited evidence of associations between work-related non-chemical stressors and fetal growth. We observed associations of similar magnitude between multiple EDC groups and decreased EFW trajectories during 20-34 gestational weeks (phthalates: -1.4% [-3.5, 0.6%]; alkylphenolic compounds (APCs): -1.1% [-2.3, 0.1%]; miscellaneous chemicals: -1.5% [-3.7, 0.8%]), while miscellaneous chemicals were associated with increased BPD from 12-20 weeks (2.1% [0.8, 3.5%]). Notably, 67% of women exposed to phthalates were hairdressers; 68% of women exposed to APCs worked as domestic cleaners. In conclusion, we found limited evidence that maternal occupational exposures impact fetal growth. Further research should consider the combined impact of multiple workplace exposures. This work was supported by grants from the National Institutes of Health/National Institute of Environmental Health Sciences (R01ES028842, PI: KWW), Instituto de Salud Carlos III (Red INMA G03/176, CB06/02/0041; FIS-FEDER: PI03/1615, PI04/1509, PI04/1112, PI04/1931, PI05/1079, PI05/1052, PI06/0867, PI06/1213, PI07/0314, PI09/02647, PI11/01007, PI11/02591, PI11/02038, PI13/1944, PI13/2032, PI14/00891, PI14/01687, PI16/1288, PI17/00663, FIS-PI18/01142 incl. FEDER funds; Miguel Servet-FEDER CP11/00178, CP15/00025, CPII16/00051, CPII18/00018, and CP16/00128), Generalitat de Catalunya-CIRIT 1999SGR 00241, EU Commission (FP7-ENV-2011 cod 282957 and HEALTH.2010.2.4.5-1), Generalitat Valenciana: FISABIO (UGP 15-230, UGP-15-244, and UGP-15-249) and Conselleria d’Educació AICO/2020/285, and Alicia Koplowitz Foundation 2017, Department of Health of the Basque Government (2005111093), Provincial Government of Gipuzkoa (DFG06/002), and annual agreements with the municipalities of the study area (Zumarraga, Urretxu, Legazpi, Azkoitia y Azpeitia y Beasain). We also acknowledge support from the Spanish Ministry of Science and Innovation and the State Research Agency through the “Centro de Excelencia Severo Ochoa 2019-2023” Program (CEX2018-000806-S), and support from the Generalitat de Catalunya through the CERCA Program. JI, DGRdP, and GLD were partly supported by the Southwest Center for Occupational and Environmental Health (SWCOEH), the Centers for Disease Control and Prevention (CDC) National Institute for Occupational Safety and Health (NIOSH) Education and Research Center (T42OH008421) at The University of Texas Health Science Center at Houston (UTHealth) School of Public Health. KWW and ES were supported in part by the by the Gulf Coast Center for Precision Environmental Health (GC-CPEH) at Baylor College of Medicine (P30ES030285). The funders had no role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript.
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- 2021
8. Knot placement in the Distributed non-linear lag models (DNLM) framework
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Suneet P. Chauhan, Michael D. Swartz, Kristina W. Whitworth, Alison M. Rector, Mònica Guxens, Elaine Symanski, Carmen Iñiguez, Jesús Ibarluzea, and Jennifer Ish
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Pure mathematics ,Nonlinear system ,Lag ,General Earth and Planetary Sciences ,General Environmental Science ,Mathematics ,Knot (mathematics) - Published
- 2021
9. Maternal occupational exposure to chemicals and neurocognitive development at 4-5 years of age
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David Gimeno Ruiz de Porras, Carmen Iñiguez, Jesús Ibarluzea, Kristina W. Whitworth, Michael D. Swartz, Jennifer Ish, George L. Delclos, Mònica Guxens, and Elaine Symanski
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business.industry ,Environmental health ,General Earth and Planetary Sciences ,Medicine ,Occupational exposure ,business ,Neurocognitive ,General Environmental Science - Published
- 2021
10. Identifying sensitive windows of exposure to NO2 and fetal growth trajectories in a Spanish population-based birth cohort
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Mònica Guxens, Kristina W. Whitworth, Suneet P. Chauhan, Jennifer Ish, Jesús Ibarluzea, Carmen Iñiguez, Michael D. Swartz, A. Rector, and Elaine Symanski
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Spanish population ,business.industry ,Fetal growth ,General Earth and Planetary Sciences ,Medicine ,business ,Birth cohort ,General Environmental Science ,Demography - Published
- 2020
11. Exploring Disparities in Maternal Residential Proximity to Unconventional Gas Development in the Barnett Shale in North Texas
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Elaine Symanski, Kristina W. Whitworth, and Jennifer Ish
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Adult ,Health, Toxicology and Mutagenesis ,Ethnic group ,lcsh:Medicine ,Women of color ,010501 environmental sciences ,index of concentration at the extremes ,01 natural sciences ,Article ,03 medical and health sciences ,Barnett Shale ,Pregnancy ,Residence Characteristics ,Humans ,Oil and Gas Fields ,unconventional gas development ,environmental justice ,0105 earth and related environmental sciences ,Retrospective Studies ,030505 public health ,lcsh:R ,Racial Groups ,Public Health, Environmental and Occupational Health ,Pregnancy Outcome ,Unconventional oil ,Census ,maternal and child health ,Texas ,Confidence interval ,Geography ,Socioeconomic Factors ,13. Climate action ,Female ,0305 other medical science ,Live birth ,Oil shale ,Privilege (social inequality) ,Demography - Abstract
Background: This study explores sociodemographic disparities in residential proximity to unconventional gas development (UGD) among pregnant women. Methods: We conducted a secondary analysis using data from a retrospective birth cohort of 164,658 women with a live birth or fetal death from November 2010 to 2012 in the 24-county area comprising the Barnett Shale play, in North Texas. We considered both individual- and census tract-level indicators of sociodemographic status and computed Indexes of Concentration at the Extremes (ICE) to quantify relative neighborhood-level privilege/disadvantage. We used negative binomial regression to investigate the relation between these variables and the count of active UGD wells within 0.8 km of the home during gestation. We calculated count ratios (CR) and 95% confidence intervals (CI) to describe associations. Results: There were fewer wells located near homes of women of color living in low-income areas compared to non-Hispanic white women living in more privileged neighborhoods (ICE race/ethnicity + income: CR = 0.51, 95% CI = 0.48&ndash, 0.55). Conclusions: While these results highlight a potential disparity in residential proximity to UGD in the Barnett Shale, they do not provide evidence of an environmental justice (EJ) issue nor negate findings of environmental injustice in other regions.
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- 2018
12. Age nine is possible: Improving age 9 HPV initiation through a national quality improvement initiative during the COVID-19 pandemic
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Jennifer Isher-Witt, Shaylen Foley, Anna Hassan, Amelia Sloan, Jennifer Nkonga, and Marcie Fisher-Borne
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Adolescent immunization ,HPV vaccination ,initiation ,age 9 ,quality improvement ,cancer prevention ,Immunologic diseases. Allergy ,RC581-607 ,Therapeutics. Pharmacology ,RM1-950 - Abstract
ABSTRACTThe American Cancer Society collaborated with a range of healthcare partners in 2020–2022 to implement quality improvement clinical interventions with the goal of improving HPV vaccination rates among adolescents’ ages 9–13. 2020 was the first cohort for which partners had been asked to submit HPV rate data for patients’ ages 9–12. At least 80% of the partners across all reported project years were able and willing to report HPV rates for these ages. Partners submitted HPV initiation rates at the beginning and end of the 12-month project year along with project activities, including evidence-based interventions (EBIs) implemented. Mean initiation rates for ages 9–10 significantly increased 4.1% during 2020 compared to non-significant rate increases of 2.6% and 2.0% for ages 11–12 and age 13, respectively. In 2021, ages 9–10 initiation saw a non-significant increase of 2.2%, whereas ages 11–12 and age 13 decreased non-significantly by 0.3% and 0.1%, respectively. The 2022 cohort saw significant initiation rate increases of at least 4% across all ages, potentially a promising result of the myriad back on track HPV vaccination campaigns designed to reverse the damage of the COVID-19 pandemic on adolescent immunizations. These findings demonstrate an effective adaptation of quality improvement in increasing HPV vaccination coverage among younger ages even during a national pandemic.
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- 2023
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13. Communication Preferences and Satisfaction of Secure Messaging Among Patients and Providers in the Military Healthcare System
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Francine F Stotler, Soledad Lindo-Moon, Belinda F Hernandez, Jennifer Ish, Brenda J. Morgan, Lucky O Agbator, and Cubby L. Gardner
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Adult ,Male ,020205 medical informatics ,Adolescent ,Patients ,Health Personnel ,02 engineering and technology ,Personal Satisfaction ,Military medicine ,03 medical and health sciences ,0302 clinical medicine ,Surveys and Questionnaires ,Health care ,0202 electrical engineering, electronic engineering, information engineering ,medicine ,Humans ,Confidentiality ,030212 general & internal medicine ,Military Medicine ,Aged ,Internet ,Text Messaging ,Modalities ,Modality (human–computer interaction) ,business.industry ,Communication ,Public Health, Environmental and Occupational Health ,Workload ,General Medicine ,Middle Aged ,medicine.disease ,Military personnel ,Military Personnel ,Secure messaging ,Female ,Medical emergency ,Psychology ,business ,Delivery of Health Care - Abstract
Introduction Use of electronic secure messaging (SM) is rapidly growing in various healthcare settings. However, there is a large number of patients that choose not use SM or use it minimally. Thus, understanding preferences for patient-provider communication modalities is critically important, particularly among military healthcare beneficiaries. The purpose of this study was to assess preferences for patient-provider communication modalities (in person, telephone, SM, or mail) among a sample of patients, providers, and staff located at five Air Force military treatment facilities across the USA. Methods We recruited patients, providers, and staff, from five family health clinics to complete a short survey. We measured participants' preferences for communication modality for various healthcare concerns, such as responses to non-urgent medical questions, test results, and medication renewal information. We also measured satisfaction with MiCare, the Air Force's SM system. We conducted chi-square analyses and Fisher's exact tests to assess differences in communication preferences by patients, providers, and staff and we computed frequencies in satisfaction responses. Results We found that while providers and staff (N = 70) prefer to communicate with patients about various healthcare concerns online through MiCare, patients (N = 1,260) prefer to communicate in-person or through the telephone. Patients were generally satisfied with MiCare; however, there was a large proportion of patients who were undecided about MiCare's impact on the quality of care they received (40.3%). Additionally, although the majority of providers and staff believed MiCare improved their efficiency (58.0%) and communication with patients (72.3%), 65.7% of providers and staff believed MiCare had increased their workload. Conclusion MiCare is a promising tool to improve patient-provider communication. However, future studies are needed to better understand why patients within the military healthcare system prefer communication modalities other than MiCare and to identify strategies to decrease provider and staff workloads while using MiCare.
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- 2018
14. The SEQC2 epigenomics quality control (EpiQC) study
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Jonathan Foox, Jessica Nordlund, Claudia Lalancette, Ting Gong, Michelle Lacey, Samantha Lent, Bradley W. Langhorst, V. K. Chaithanya Ponnaluri, Louise Williams, Karthik Ramaswamy Padmanabhan, Raymond Cavalcante, Anders Lundmark, Daniel Butler, Christopher Mozsary, Justin Gurvitch, John M. Greally, Masako Suzuki, Mark Menor, Masaki Nasu, Alicia Alonso, Caroline Sheridan, Andreas Scherer, Stephen Bruinsma, Gosia Golda, Agata Muszynska, Paweł P. Łabaj, Matthew A. Campbell, Frank Wos, Amanda Raine, Ulrika Liljedahl, Tomas Axelsson, Charles Wang, Zhong Chen, Zhaowei Yang, Jing Li, Xiaopeng Yang, Hongwei Wang, Ari Melnick, Shang Guo, Alexander Blume, Vedran Franke, Inmaculada Ibanez de Caceres, Carlos Rodriguez-Antolin, Rocio Rosas, Justin Wade Davis, Jennifer Ishii, Dalila B. Megherbi, Wenming Xiao, Will Liao, Joshua Xu, Huixiao Hong, Baitang Ning, Weida Tong, Altuna Akalin, Yunliang Wang, Youping Deng, and Christopher E. Mason
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Biology (General) ,QH301-705.5 ,Genetics ,QH426-470 - Abstract
Abstract Background Cytosine modifications in DNA such as 5-methylcytosine (5mC) underlie a broad range of developmental processes, maintain cellular lineage specification, and can define or stratify types of cancer and other diseases. However, the wide variety of approaches available to interrogate these modifications has created a need for harmonized materials, methods, and rigorous benchmarking to improve genome-wide methylome sequencing applications in clinical and basic research. Here, we present a multi-platform assessment and cross-validated resource for epigenetics research from the FDA’s Epigenomics Quality Control Group. Results Each sample is processed in multiple replicates by three whole-genome bisulfite sequencing (WGBS) protocols (TruSeq DNA methylation, Accel-NGS MethylSeq, and SPLAT), oxidative bisulfite sequencing (TrueMethyl), enzymatic deamination method (EMSeq), targeted methylation sequencing (Illumina Methyl Capture EPIC), single-molecule long-read nanopore sequencing from Oxford Nanopore Technologies, and 850k Illumina methylation arrays. After rigorous quality assessment and comparison to Illumina EPIC methylation microarrays and testing on a range of algorithms (Bismark, BitmapperBS, bwa-meth, and BitMapperBS), we find overall high concordance between assays, but also differences in efficiency of read mapping, CpG capture, coverage, and platform performance, and variable performance across 26 microarray normalization algorithms. Conclusions The data provided herein can guide the use of these DNA reference materials in epigenomics research, as well as provide best practices for experimental design in future studies. By leveraging seven human cell lines that are designated as publicly available reference materials, these data can be used as a baseline to advance epigenomics research.
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- 2021
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15. Author Correction: The SEQC2 epigenomics quality control (EpiQC) study
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Jonathan Foox, Jessica Nordlund, Claudia Lalancette, Ting Gong, Michelle Lacey, Samantha Lent, Bradley W. Langhorst, V. K. Chaithanya Ponnaluri, Louise Williams, Karthik Ramaswamy Padmanabhan, Raymond Cavalcante, Anders Lundmark, Daniel Butler, Christopher Mozsary, Justin Gurvitch, John M. Greally, Masako Suzuki, Mark Menor, Masaki Nasu, Alicia Alonso, Caroline Sheridan, Andreas Scherer, Stephen Bruinsma, Gosia Golda, Agata Muszynska, Paweł P. Łabaj, Matthew A. Campbell, Frank Wos, Amanda Raine, Ulrika Liljedahl, Tomas Axelsson, Charles Wang, Zhong Chen, Zhaowei Yang, Jing Li, Xiaopeng Yang, Hongwei Wang, Ari Melnick, Shang Guo, Alexander Blume, Vedran Franke, Inmaculada Ibanez de Caceres, Carlos Rodriguez-Antolin, Rocio Rosas, Justin Wade Davis, Jennifer Ishii, Dalila B. Megherbi, Wenming Xiao, Will Liao, Joshua Xu, Huixiao Hong, Baitang Ning, Weida Tong, Altuna Akalin, Yunliang Wang, Youping Deng, and Christopher E. Mason
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Biology (General) ,QH301-705.5 ,Genetics ,QH426-470 - Published
- 2021
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16. DNA Methylation Dynamics of Germinal Center B Cells Are Mediated by AID
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Pilar M. Dominguez, Matt Teater, Nyasha Chambwe, Matthias Kormaksson, David Redmond, Jennifer Ishii, Bao Vuong, Jayanta Chaudhuri, Ari Melnick, Aparna Vasanthakumar, Lucy A. Godley, F. Nina Papavasiliou, Olivier Elemento, and Rita Shaknovich
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Biology (General) ,QH301-705.5 - Abstract
Changes in DNA methylation are required for the formation of germinal centers (GCs), but the mechanisms of such changes are poorly understood. Activation-induced cytidine deaminase (AID) has been recently implicated in DNA demethylation through its deaminase activity coupled with DNA repair. We investigated the epigenetic function of AID in vivo in germinal center B cells (GCBs) isolated from wild-type (WT) and AID-deficient (Aicda−/−) mice. We determined that the transit of B cells through the GC is associated with marked locus-specific loss of methylation and increased methylation diversity, both of which are lost in Aicda−/− animals. Differentially methylated cytosines (DMCs) between GCBs and naive B cells (NBs) are enriched in genes that are targeted for somatic hypermutation (SHM) by AID, and these genes form networks required for B cell development and proliferation. Finally, we observed significant conservation of AID-dependent epigenetic reprogramming between mouse and human B cells.
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- 2015
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17. Diagnostic and therapeutic treatment modalities for acute lower gastrointestinal bleeding: a systematic review
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Kathryn Oakland, Jennifer Isherwood, Conor Lahiff, Petra Goldsmith, Michael Desborough, Katherine S. Colman, Richard Guy, Raman Uberoi, Michael F. Murphy, James E. East, Sally Hopewell, and Vipul Jairath
- Subjects
Diseases of the digestive system. Gastroenterology ,RC799-869 - Abstract
Background and study aims Investigations for lower gastrointestinal bleeding (LGIB) include flexible sigmoidoscopy, colonoscopy, computed tomographic angiography (CTA), and angiography. All may be used to direct endoscopic, radiological or surgical treatment, although their optimal use is unknown. The aims of this study were to determine the diagnostic and therapeutic yields of endoscopy, CTA, and angiography for managing LGIB, and their influence on rebleeding, transfusion, and hospital stay. Patients and methods A systematic search of MEDLINE, PubMed, EMBASE, and CENTRAL was undertaken to identify randomized controlled trials (RCTs) and nonrandomized studies of intervention (NRSIs) published between 2000 and 12 November 2015 in patients hospitalized with LGIB. Separate meta-analyses were conducted, presented as pooled odds (ORs) or risk ratios (RR) with 95 % confidence intervals (CIs). Results Two RCTs and 13 NRSIs were included, none of which examined flexible sigmoidoscopy, or compared endotherapy with embolization, or investigated the timing of CTA or angiography. Two NRSIs (57 – 223 participants) comparing colonoscopy and CTA were of insufficient quality for synthesis but showed no difference in diagnostic yields between the two interventions. One RCT and 4 NRSIs (779 participants) compared early colonoscopy (
- Published
- 2017
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