1. Gas phase vibrations of an anionic, hydrogen-bonded homodimer of a nucleobase analogue: Isocytosino-8-trifluoromethylquinolone
- Author
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Jos Oomens, Giel Berden, Jonathan Martens, Jay-Ar Bendo, Thomas Hellman Morton, and Molecular Spectroscopy (HIMS, FNWI)
- Subjects
FELIX Molecular Structure and Dynamics ,010405 organic chemistry ,Chemistry ,Hydrogen bond ,010402 general chemistry ,Condensed Matter Physics ,01 natural sciences ,Acceptor ,Dissociation (chemistry) ,0104 chemical sciences ,Nucleobase ,chemistry.chemical_compound ,Crystallography ,Monomer ,Deprotonation ,Deuterium ,Infrared multiphoton dissociation ,Physical and Theoretical Chemistry ,Instrumentation ,Spectroscopy - Abstract
Synthesis and spectra of isocytosino-8-trifluoromethylquinolone (1), as well as the gas phase InfraRed Multiple Photon Dissociation (IRMPD) spectra in the fingerprint region of the corresponding deprotonated anion (3), its d3 analogue, the monodeprotonated homodimer (2), and its d7 analogue are reported here. The anions represent nucleobase analogues having the hydrogen bonding pattern ADAAD (where A stands for acceptor and D stands for donor), in which the site of negative charge is unambiguous (as opposed to guanine, which has more than one acidic nitrogen). The match between experimental vibrational spectra and calculation is good, except for the out-of-plane HNH bends of the undeuterated and deuterated monomer anions between 400 and 600 cm−1. The anionic homodimers form in a parallel orientation.
- Published
- 2018