474 results on '"James A. Kelley"'
Search Results
2. SARSNTdb database: Factors affecting SARS-CoV-2 sequence conservation
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John Orgera, James J. Kelley, Omri Bar, Sathyanarayanan Vaidhyanathan, and Andrey Grigoriev
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SARS-CoV-2 ,SARS-CoV ,database ,genome analysis ,bioinformatics ,Microbiology ,QR1-502 - Abstract
SARSNTdb offers a curated, nucleotide-centric database for users of varying levels of SARS-CoV-2 knowledge. Its user-friendly interface enables querying coding regions and coordinate intervals to find out the various functional and selective constraints that act upon the corresponding nucleotides and amino acids. Users can easily obtain information about viral genes and proteins, functional domains, repeats, secondary structure formation, intragenomic interactions, and mutation prevalence. Currently, many databases are focused on the phylogeny and amino acid substitutions, mainly in the spike protein. We took a novel, more nucleotide-focused approach as RNA does more than just code for proteins and many insights can be gleaned from its study. For example, RNA-targeted drug therapies for SARS-CoV-2 are currently being developed and it is essential to understand the features only visible at that level. This database enables the user to identify regions that are more prone to forming secondary structures that drugs can target. SARSNTdb also provides illustrative mutation data from a subset of ~25,000 patient samples with a reliable read coverage across the whole genome (from different locations and time points in the pandemic. Finally, the database allows for comparing SARS-CoV-2 and SARS-CoV domains and sequences. SARSNTdb can serve the research community by being a curated repository for information that gives a jump start to analyze a mutation’s effect far beyond just determining synonymous/non-synonymous substitutions in protein sequences.
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- 2022
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3. The Emperor of Fashion’s New Starts: Creativity and Meaning in Life in Karl Lagerfeld
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Claude-Hélène Mayer and James L. Kelley
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creativity ,meaning in life ,four c-model ,big-c ,pro-c ,little-c ,mini-c ,wics ,psychobiography ,fashion world ,haute couture ,Psychology ,BF1-990 - Abstract
During his lifetime, Karl Otto Lagerfeld (1933–2018) attained such industry renown that he became widely known as the Emperor of Fashion. Lagerfeld ran several fashion houses, such as Chanel and Fendi, leading them to unprecedented profits. He also created his own fashion label. Owing to his unremitting pursuit of excellence through creative expression, Lagerfeld’s creativity, energy and intuition for fashion trends seemed only to expand throughout his long career. The authors suggest that, through his creative approach to fashion, architecture, and publishing, Lagerfeld articulated and refined a core set of values-such as “Bildung,” “lightness” and “the unexpected”—that served as a Diltheyan “nexus” linking the Prussian-born designer with the global consumer. The authors apply two specific creativity theories to Lagerfeld’s life and work, namely the mini-c, little-c, Pro-c and Big-C creativity theory and Sternberg’s WICS-model (wisdom, intelligence and creativity). The article uses a psychobiographical case study design formulated according to a research paradigm of modern hermeneutics. First- and third-person data on Lagerfeld were collected and evaluated through a hermeneutically-informed syntho-analysis. Research ethics were followed. The findings demonstrate the interplay of mini-c, little-c, Pro-c and Big-C creativity throughout the subject’s lifetime, as well as the subject’s application of WICS, both of which led to the subject’s worldwide success. Conclusions are drawn and recommendations for future research and practice are provided.
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- 2021
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4. Contact: William S. Burroughs’s philosophy of love
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James L, Kelley
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Psychiatry and Mental health - Abstract
The present psychobiography took up the three main psychoanalytic conceptions of love to illuminate the psychological development of famed experimental writer William Seward Burroughs (1914-1997). The study found evidence of all three concepts of love in the subject's life strategies: (1) Love as cathexis was present in Burroughs' fascination with centipedes and other vermin that appeared in his dreams and which symbolised, in part, his terror over early childhood traumas as well as his concomitant struggle to integrate sex with intimacy. (2) Love as eroto-philiac fusion was observed in Burroughs' unstable and even exploitative relationships with others. This tendency was most salient in Burroughs' abortive attempts to seduce straight men, as well as in his failed efforts to be a traditional husband and father. (3) Reparative love became the subject's primary mode of interaction late in life. The study showed that, in his declining years, Burroughs was able to overcome partially the maladaptive strategies of his early life through his numerous pet cats, upon whom he projected aspects of his past romantic partners and friends.
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- 2023
5. Transfusion reactions in pediatric and adolescent young adult haematology oncology and immune effector cell patients
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Mira A. Kohorst, Sajad J. Khazal, Priti Tewari, Demetrios Petropoulos, Benjamin Mescher, Jian Wang, Kris M. Mahadeo, and James M. Kelley
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Medicine (General) ,R5-920 - Abstract
Background: Active surveillance for transfusion reactions is critically important among pediatric patients undergoing chemotherapy. Among pediatric-adolescent-young-adult (AYA) hematology/oncology patients, who have been typically excluded from transfusion reaction studies, this profile remains poorly characterized. Methods: We assessed the incidence and clinical characteristics of transfusion reactions (n = 3246 transfusions) in this population (n = 201 patients) at our center. Findings: The incidence of adjudicated transfusion reactions was 2·04%. The incidence was higher for platelet (2·78%) compared to packed red blood cell transfusions (1·49%) (p = 0·0149). The majority (61·4%) of all reactions were classified as febrile non-haemolytic transfusion, while 35·7% were considered allergic, and 2·9% were classified as transfusion-associated circulatory overload. The incidence of transfusion reactions in patients who were pre-medicated was higher (2·51%) than in patients who were not (1·52%) (p = 0·0406). Sub-set analysis revealed a 3·95% incidence of adjudicated transfusion reactions among recipients of immune effector cells (IECs) (n = 3), all of which occurred during the potential window for cytokine release syndrome; two-thirds of these reactions were severe/potentially life-threatening. Interpretation: The incidence of transfusion reactions among pediatric-AYA hematology/oncology patients may be lower than the general pediatric population. Patients with a prior history of transfusion reactions and those receiving platelet transfusions may be at higher risk for reaction. From our limited sample, IEC recipients may be at risk for severe transfusion reactions. Large multi-center prospective studies are needed to characterize transfusion reactions in this population. Appropriate characterization of reactions in this population may inform risk stratification and mitigate missed opportunities for prompt recognition and appropriate management. Funding: None.
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- 2020
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6. Online brand community: through the eyes of Self-Determination Theory
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James B Kelley and Dana L Alden
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- 2016
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7. Engaging Students in Physical Activity, Skill, and Fitness Participation
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James A. Kelley and Brent Heidorn
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Orthopedics and Sports Medicine ,Education - Published
- 2022
8. Oncology Patients Who Develop Transfusion-Associated Circulatory Overload: An Observational Study
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Marisol Maldonado, Colleen E Villamin, Leah E Murphy, Amitava Dasgupta, Roland L Bassett, Mayrin Correa Medina, Tonita S Bates, Fernando Martinez, Adriana M Knopfelmacher Couchonal, Kimberly Klein, and James M Kelley
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Adult ,Incidence ,Neoplasms ,Biochemistry (medical) ,Clinical Biochemistry ,Humans ,Transfusion Reaction ,Blood Transfusion ,Review ,Retrospective Studies - Abstract
Background Transfusion-associated circulatory overload (TACO) is a largely preventable transfusion complication that results in significant morbidity and mortality. Cancers, related treatments, and comorbidities are among the factors that can predispose patients to TACO, but currently there are limited data on this topic in the literature. Methods We collected data retrospectively from the electronic health records of 93 adult patients with cancer who met Centers for Disease Control and Prevention (CDC) criteria for TACO from July 1, 2019, through October 31, 2020. The parameters we studied included demographics, comorbidities, treatment modalities, transfusion practices, and outcomes. We summarized data by means and ranges for continuous variables, and proportions for categorical variables. Results During the study period, the incidence of TACO among oncology patients was 0.84 per 1000 transfusions (95% CI, 0.68–1.02), representing 6.6% of all reactions. This percentage is high, compared with 1%–6% among other populations. Unique characteristics such as hematology malignancy (75.3%), receipt of cardiotoxic chemotherapy (87.1%), pneumonia (57.0%), preexisting oxygen use (59.1%), dyspnea (62.4%), hypertension (55.9%), renal insufficiency (46.2%), daily use of corticosteroids (43.0%), daily use of diuretics (40.9%), daily use of beta-blockers (36.6%), and elevated NT-proBNP (33.3%) were frequently observed in these group of oncology patients. Conclusions Our study indicates that oncology patients have unique factors that may lead to diagnosis of TACO. Developing appropriate guidelines that apply to oncology patients, in addition to those set forth by the CDC, should be considered. Implementation by ordering healthcare providers of a tools that can predict TACO can help in early recognition and mitigation of TACO.
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- 2022
9. 'Impressionen Unter Druck': A Psychobiography of Leni Riefenstahl
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James L. Kelley
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- 2023
10. Customer-Centric Marketing: Supporting Sustainability in the Digital Age
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Neil Richardson, Jon James, Neil Kelley
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- 2015
11. Intellectual Property for Biotechnology and Pharmaceutical Products
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Michael Ray Myers, James J. Kelley, Vicki Norton, John Rudolph, Andrea M. Castetter, Dave Stemerick, Lawrence Welch, Gregory A. Cox, and Jennifer Gregory
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Commerce ,Business ,Information security ,Intellectual property - Published
- 2021
12. Modeling spring migration patterns of scoters and loons in the Bay of Fundy
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Heather L. Major and James D. Kelley
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Fishery ,geography ,geography.geographical_feature_category ,biology ,Spring (hydrology) ,Common loon ,White-winged scoter ,Environmental science ,biology.organism_classification ,Bay ,Ecology, Evolution, Behavior and Systematics ,Red-throated Loon - Published
- 2020
13. The Heroine Archetype and Design Leadership in Bethlehem Tilahun Alemu: A Psychobiological Global Leadership Investigation
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Claude-Hélène Mayer and James L. Kelley
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- 2022
14. List of contributors
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Arnold P. Advincula, Jamie N. Bakkum-Gamez, Genevieve Bouchard-Fortier, Anne Burke, Leslie H. Clark, Robert L. Coleman, Allan Covens, Deborah S. Cowley, Anne R. Davis, Mary Segars Dolan, Sarah K. Dotters-Katz, Nataki C. Douglas, Sean C. Dowdy, Linda O. Eckert, Michael Fialkow, Eric J. Forman, Michael Frumovitz, Paola Alvarez Gehrig, David M. Gershenson, Jennifer Bushman Gilner, Laura J. Havrilesky, Cherie C. Hill, Hye-Chun Hur, Anuja Jhingran, James M. Kelley, Anna C. Kirby, Jeffrey A. Kuller, Eduardo Lara-Torre, Gretchen M. Lentz, Roger A. Lobo, Karen H. Lu, Vicki Mendiratta, Larissa A. Meyer, Jane L. Miller, Andra Nica, Jaclyn D. Nunziato, James W. Orr, Amanda Padro, Natacha Phoolcharoen, Thomas M. Price, Beth W. Rackow, Pedro T. Ramirez, Licia Raymond, Eleanor H.J. Rhee, Katherine Rivlin, David T. Rock, Timothy Ryntz, Mila Pontremoli Salcedo, Gloria Salvo, Samith Sandadi, Kathleen M. Schmeler, Judith A. Smith, Pamela T. Soliman, Anil K. Sood, Premal H. Thaker, Mireille Truong, Jenna Turocy, Fidel A. Valea, Catherine H. Watson, Shannon N. Westin, and Zev Williams
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- 2022
15. Sequences of SARS-CoV-2 'Hybrids' with the Human Genome: Signs of Non-coding RNA?
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Andrey Grigoriev, Lingyu Guan, and James J. Kelley
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2019-20 coronavirus outbreak ,RNA, Untranslated ,Human dna ,Coronavirus disease 2019 (COVID-19) ,Genome, Human ,SARS-CoV-2 ,viruses ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,fungi ,Immunology ,COVID-19 ,Genome, Viral ,Biology ,Non-coding RNA ,Microbiology ,Virology ,body regions ,Insect Science ,Humans ,RNA, Viral ,Human genome ,skin and connective tissue diseases - Abstract
Controversial reports of human-virus chimeric reads (HVCRs) suggested a possible integration of SARS-CoV-2 sequences into human DNA (1-3).….
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- 2021
16. Argon Laser Photocoagulation For Macular Edema In Branch Vein Occlusion
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John G. Clarkson, J. Donald M. Gass, Victor T. Curtin, Edward W.D. Norton, George W. Blankenship, Harry W. Flynn, Marilyn Mulé, Kathy Leyden, Ivy Guice, James Liang, Kenneth R. Diddie, Stephen J. Rvan, Ronald E. Smith, Richard R. Ober, Frances Walonker, Nancy Borkowski, Clement L. Trempe, Charles L. Schepens, H. MacKenzie Freeman, J. Wallace McMeel, Sherrill F. Anderson, Lynda Lane, David H. Orth, Timothy P. Flood, Charles M. Vygantas, Linda June-Arredondo, Roberta Martia, Morton F. Goldberg, Mark O.M. T'so, Teri Fitzgerald, Daniel Finkelstein, Arnall Patz, Stuart Fine, Thomas Rice, Dolores Rytel, John Clarkson, David Orth, Clement Trempe, Allyn W. Kimball, Israel Goldberg, James S. Kelley, Amall Patz, Ronald E. Carr, Everett F. Goldberg, Allan D. Jensen, Curtis Meinert, Frederick Ferris, Argye Hillis, Michele Melia, Lucy Mead, Darcy Massof, Chestina H. Marquart, and Janet Bowman
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Adult ,Aged, 80 and over ,Male ,Laser Coagulation ,Visual Acuity ,Middle Aged ,Macular Edema ,Vitreous Hemorrhage ,Ophthalmology ,Retinal Vein Occlusion ,Humans ,Corneal Neovascularization ,Female ,Argon ,Aged - Abstract
The Branch Vein Occlusion Study is a multi-center, randomized, controlled clinical trial designed to answer several questions regarding the management of complications of branch vein occlusion. This report discusses the question, "Is argon laser photocoagulation useful in improving visual acuity in eyes with branch vein occlusion and macular edema reducing vision to 20/40 or worse?" One hundred thirty-nine eligible eyes were assigned randomly to either a treated or an untreated control group. Comparing treated patients to control patients (mean follow-up 3.1 years for all study eyes), the gain of at least two lines of visual acuity from baseline maintained for two consecutive visits was significantly greater in treated eyes (P = .00049, logrank test). Because of this improvement in visual acuity with argon laser photocoagulation of macular edema from branch vein occlusion, we recommend laser photocoagulation for patients with macular edema associated with branch vein occlusion who meet the eligibility criteria of this study.
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- 2018
17. 'West of Hollywood': Humor as reparative work and cross-cultural bridge in the life and work of Walter Becker
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Norman, James L Kelley
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- 2021
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18. ‘West of Hollywood’: Humor as Reparation in the Life and Work of Walter Becker
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James L. Kelley
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Hollywood ,business.industry ,Aesthetics ,media_common.quotation_subject ,Psychobiography ,Orientalism ,Music industry ,Persona ,business ,Romance ,Irony ,media_common ,Theme (narrative) - Abstract
Innovative musician, producer, and songwriter Walter Becker (1950–2017) wielded humor to distance himself from a traumatic childhood and to bind himself to a peer group that shared his skewed, wry worldview. Following years of struggle at the fringes of the music business, Becker achieved worldwide success as cofounder of the platinum-selling band Steely Dan. By the end of the 1970s, however, Steely Dan was defunct, and Becker retreated to the Polynesian-American subculture of Maui, Hawaii, where he continued to write and record songs that tackled the orientalist theme of ‘East meets West’ in his inimitable, droll style. The present chapter takes up Eysenck’s psychology of humor as well as various social theorists’ assessments of Romantic irony as lenses through which to view Walter Becker’s lifelong struggle to bend his potentially ego-diminishing sardonicism into positive relations with self and others. Positive Psychology 2.0 (PP2) will be called upon to frame the chapter’s discussion section, in which it is concluded that Becker was able to mitigate the self-other corrosion that emanated from his hipster-satirist persona by integrating into his art the more earnest, sincere sentiments that sprang from life on his Maui estate, where sustained interaction with family, friends, and artistic collaborators reflected his embrace of a slow-paced, pastoral culture that the Manhattan-born bohemian had earlier dismissed as shallow and vacuous.
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- 2021
19. ‘Aristocrat of the underground’: Karl Lagerfeld’s Romantic Self-fashioning as a Meaningful Transformation of Shame
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Claude-Hélène Mayer and James L. Kelley
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- 2021
20. A series of developmental validation tests for Number of Contributors platforms: Exemplars using NOCIt and a neural network
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Jakob Valtl, Ullrich J. Monich, James J. Kelley, Desmond S. Lun, and Catherine M. Grgicak
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0301 basic medicine ,Computer science ,Bayesian probability ,Bayesian inference ,Machine learning ,computer.software_genre ,Synthetic data ,Pathology and Forensic Medicine ,03 medical and health sciences ,0302 clinical medicine ,Genetics ,Range (statistics) ,Humans ,030216 legal & forensic medicine ,Artificial neural network ,business.industry ,Probabilistic logic ,Bayes Theorem ,DNA ,DNA Fingerprinting ,Electropherogram ,030104 developmental biology ,Probability distribution ,Artificial intelligence ,Neural Networks, Computer ,business ,computer ,Microsatellite Repeats - Abstract
Complex DNA mixtures are challenging to interpret and require computational tools that aid in that interpretation. Recently, several computational methods that estimate the number of contributors (NOC) to a sample have been developed. Unlike analogous tools that interpret profiles and report LRs, NOC tools vary widely in their operational principle where some are Bayesian and others are machine learning tools. Conjunctionally, NOC tools may return a single n estimate, or a distribution on n. This vast array of constructs, coupled with a gap in standardized methods by which to validate NOC systems, warrants an exploration into the measures by which differing NOC systems might be tested for operations. In the current paper, we use two exemplar NOC systems: a probabilistic system named NOCIt, which renders an a posteriori probability (APP) distribution on the number of contributors given an electropherogram and an artificial neural network (ANN). NOCIt is a continuous Bayesian inference system incorporating models of peak height, degradation, differential degradation, forward and reverse stutter, noise and allelic drop-out while considering allele frequencies in a reference population. The ANN is also a continuous method, taking all the same features (barring degradation) into account. Unlike its Bayesian counterpart, it demands substantively more data to parameterize, requiring synthetic data. We explore each system’s performance by conducting tests on 214 PROVEDIt mixtures where the limit of detection was 1-copy of DNA. We found that after a lengthy training period of approximately 24 h, the ANN’s evaluation process was very fast and perfectly repeatable. In contrast, NOCIt only took a few minutes to train but took tens of minutes to complete each sample and was less repeatable. In addition, it rendered a probability distribution that was more sensitive and specific, affording a reasonable method by which to report all reasonable n that explain the evidence for a given sample. Whatever the method, by acknowledging the inherent differences between NOC systems, we demonstrate that validation constructs will necessarily be guided by the needs of the forensic domain and be dependent upon whether the laboratory seeks to assign a single n or range of n.
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- 2020
21. Post-Operative Opioid Prescribing Practices and Trends Among Urology Residents in the United States
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Sharon Hill, James J Kelley, Nathan Hale, and Samuel Deem
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Opioid epidemic ,medicine.medical_specialty ,prescription opioid ,business.industry ,Urology ,Patient risk ,General Engineering ,Vasectomy ,Resident education ,030204 cardiovascular system & hematology ,Opioid prescribing ,urologic procedures ,03 medical and health sciences ,0302 clinical medicine ,Opioid ,medicine ,Pain Management ,Post operative ,business ,030217 neurology & neurosurgery ,Residency training ,medicine.drug - Abstract
Introduction: With the opioid epidemic escalating across the country, we sought to evaluate and characterize post-operative opioid prescribing habits and trends among urology residents in the United States. Methods: Urology residents were sent a 16-question survey regarding opioid prescribing patterns, influencing factors, opioid training experience, and amounts of opioids prescribed for common urologic procedures. Results: One hundred and four urology residents participated in the survey (75% male and 25% female). Common factors influencing opioid prescribing were standard prescribing practice for certain operations (80%), attending/senior resident preference (62.1%), and immediate post-operative pain (54.7%). Residents reported prescribing more opioids at discharge for open abdominal and robotic procedures (167.9 and 134.2 morphine milligram equivalents, MME, respectively) and lower amounts for outpatient surgeries (39.7 and 55.8 MME for vasectomy and transurethral resections). Only 15.5% of residents utilize any formal algorithm for post-operative opioid prescribing at their institution. Further, 51.6% of residents received no formal education on safe opioid prescribing during residency, and only 42.1% routinely assess patient risk for opioid abuse. Urology residents who received formal opioid training prescribed less opioids on average for common urologic procedures compared to those who had not trained. Conclusions: This study highlights the importance of increasing resident education on opioid prescribing during residency training, as well as an opportunity for the implementation of standardized post-operative opioid prescribing regimens to help improve trends in urology resident opioid prescribing.
- Published
- 2020
22. Recifin A, Initial Example of the Tyr-Lock Peptide Structural Family, Is a Selective Allosteric Inhibitor of Tyrosyl-DNA Phosphodiesterase I
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K. Johan Rosengren, Suthananda N. Sunassee, Edmund Price, Christophe Marchand, Brice A P Wilson, Christina I. Schroeder, Yves Pommier, Kirk R. Gustafson, James A. Kelley, Alun Bermingham, Tad Guszczynski, Barry R. O'Keefe, Lauren R.H. Krumpe, and Wenjie Wang
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Stereochemistry ,medicine.drug_class ,Allosteric regulation ,Peptide ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Catalysis ,Article ,Colloid and Surface Chemistry ,Allosteric Regulation ,Catalytic Domain ,medicine ,Amino Acid Sequence ,Disulfides ,Enzyme Inhibitors ,Peptide sequence ,chemistry.chemical_classification ,Phosphoric Diester Hydrolases ,Phosphodiesterase ,General Chemistry ,Cyclic peptide ,0104 chemical sciences ,High-Throughput Screening Assays ,chemistry ,Phosphodiester bond ,Tyrosine ,Peptides ,TDP1 ,Topoisomerase inhibitor - Abstract
Tyrosyl-DNA phosphodiesterase 1 (TDP1) is a molecular target for the sensitization of cancer cells to the FDA-approved topoisomerase inhibitors topotecan and irinotecan. High-throughput screening of natural product extract and fraction libraries for inhibitors of TDP1 activity resulted in the discovery of a new class of knotted cyclic peptides from the marine sponge Axinella sp. Bioassay-guided fractionation of the source extract resulted in the isolation of the active component which was determined to be an unprecedented 42-residue cysteine-rich peptide named recifin A. The native NMR structure revealed a novel fold comprising a four strand antiparallel β-sheet and two helical turns stabilized by a complex disulfide bond network that creates an embedded ring around one of the strands. The resulting structure, which we have termed the Tyr-lock peptide family, is stabilized by a tyrosine residue locked into three-dimensional space. Recifin A inhibited the cleavage of phosphodiester bonds by TDP1 in a FRET assay with an IC(50) of 190 nM. Enzyme kinetics studies revealed that recifin A can specifically modulate the enzymatic activity of full-length TDP1 while not affecting the activity of a truncated catalytic domain of TDP1 lacking the N-terminal regulatory domain (Δ1–147), suggesting an allosteric binding site for recifin A on the regulatory domain of TDP1. Recifin A represents both the first of a unique structural class of knotted disulfide-rich peptides and defines a previously unseen mechanism of TDP1 inhibition that could be productively exploited for potential anticancer applications.
- Published
- 2020
23. Transfusion reactions in pediatric and adolescent young adult haematology oncology and immune effector cell patients
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Kris M. Mahadeo, Jian Wang, Sajad Khazal, Priti Tewari, Mira A. Kohorst, James M. Kelley, Demetrios Petropoulos, and Benjamin Mescher
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medicine.medical_specialty ,Research paper ,medicine.medical_treatment ,Population ,01 natural sciences ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,medicine ,Platelet ,030212 general & internal medicine ,0101 mathematics ,Young adult ,Prospective cohort study ,education ,Chemotherapy ,education.field_of_study ,lcsh:R5-920 ,Hematology ,business.industry ,Incidence (epidemiology) ,010102 general mathematics ,General Medicine ,medicine.disease ,Cytokine release syndrome ,business ,lcsh:Medicine (General) - Abstract
Background Active surveillance for transfusion reactions is critically important among pediatric patients undergoing chemotherapy. Among pediatric-adolescent-young-adult (AYA) hematology/oncology patients, who have been typically excluded from transfusion reaction studies, this profile remains poorly characterized. Methods We assessed the incidence and clinical characteristics of transfusion reactions (n = 3246 transfusions) in this population (n = 201 patients) at our center. Findings The incidence of adjudicated transfusion reactions was 2·04%. The incidence was higher for platelet (2·78%) compared to packed red blood cell transfusions (1·49%) (p = 0·0149). The majority (61·4%) of all reactions were classified as febrile non-haemolytic transfusion, while 35·7% were considered allergic, and 2·9% were classified as transfusion-associated circulatory overload. The incidence of transfusion reactions in patients who were pre-medicated was higher (2·51%) than in patients who were not (1·52%) (p = 0·0406). Sub-set analysis revealed a 3·95% incidence of adjudicated transfusion reactions among recipients of immune effector cells (IECs) (n = 3), all of which occurred during the potential window for cytokine release syndrome; two-thirds of these reactions were severe/potentially life-threatening. Interpretation The incidence of transfusion reactions among pediatric-AYA hematology/oncology patients may be lower than the general pediatric population. Patients with a prior history of transfusion reactions and those receiving platelet transfusions may be at higher risk for reaction. From our limited sample, IEC recipients may be at risk for severe transfusion reactions. Large multi-center prospective studies are needed to characterize transfusion reactions in this population. Appropriate characterization of reactions in this population may inform risk stratification and mitigate missed opportunities for prompt recognition and appropriate management. Funding None.
- Published
- 2020
24. Strengthening Policy Coding Methodologies to Improve COVID-19 Disease Modeling and Policy Responses: A Proposed Coding Framework and Recommendations
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Jeff Lane, James C. Kelley, Aaron Katz, Priya Sarma, and Michelle M. Garrison
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2019-20 coronavirus outbreak ,Coronavirus disease 2019 (COVID-19) ,Epidemiology ,Computer science ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Physical Distancing ,Health Informatics ,Disease ,Models, Biological ,01 natural sciences ,03 medical and health sciences ,0302 clinical medicine ,Humans ,030212 general & internal medicine ,Sociology ,0101 mathematics ,lcsh:R5-920 ,Public economics ,Health Policy ,Social distance ,010102 general mathematics ,COVID-19 ,Policy analysis ,Data science ,United States ,lcsh:Medicine (General) ,Research Article ,Coding (social sciences) - Abstract
Background In recent months, multiple efforts have sought to characterize COVID-19 social distancing policy responses. These efforts have used various coding frameworks, but many have relied on coding methodologies that may not adequately describe the gradient in social distancing policies as states “re-open.” Methods We developed a COVID-19 social distancing intensity framework that is sufficiently specific and sensitive to capture this gradient. Based on a review of policies from a 12 U.S. state sample, we developed a social distancing intensity framework consisting of 16 domains and intensity scales of 0–5 for each domain. Results We found that the states with the highest average daily intensity from our sample were Pennsylvania, Washington, Colorado, California, and New Jersey, with Georgia, Florida, Massachusetts, and Texas having the lowest. While some domains (such as restaurants and movie theaters) showed bimodal policy intensity distributions compatible with binary (yes/no) coding, others (such as childcare and religious gatherings) showed broader variability that would be missed without more granular coding. Conclusion This detailed intensity framework reveals the granularity and nuance between social distancing policy responses. Developing standardized approaches for constructing policy taxonomies and coding processes may facilitate more rigorous policy analysis and improve disease modeling efforts.
- Published
- 2020
25. Overview of COVID-19 testing and implications for otolaryngologists
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James M. Kelley, Ehab Y. Hanna, Kimberley L. Kiong, Chris Yao, Yelda Jozaghi, Xiao Zhao, Theresa Guo, and Daniel B. Vinh
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Hemoptysis ,Chest ct ,SARS‐CoV‐2 ,0302 clinical medicine ,COVID-19 Testing ,Nasopharynx ,Medicine ,030212 general & internal medicine ,Viral ,030223 otorhinolaryngology ,Lung ,Tomography ,Fatigue ,screening and diagnosis ,Special Issue ,Reverse Transcriptase Polymerase Chain Reaction ,Headache ,Diagnostic test ,testing ,Test (assessment) ,X-Ray Computed ,Detection ,PCR ,Infectious Diseases ,Quarantine ,RNA, Viral ,Coronavirus Infections ,4.2 Evaluation of markers and technologies ,Diarrhea ,2019-20 coronavirus outbreak ,medicine.medical_specialty ,Coronavirus disease 2019 (COVID-19) ,Fever ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Pneumonia, Viral ,Clinical Sciences ,Antibodies ,Vaccine Related ,03 medical and health sciences ,Betacoronavirus ,COVID‐19 ,Biodefense ,Preoperative Care ,Humans ,Medical physics ,Pandemics ,business.industry ,Clinical Laboratory Techniques ,SARS-CoV-2 ,Prevention ,Sputum ,COVID-19 ,Pneumonia ,Myalgia ,sensitivity ,Otorhinolaryngologic Surgical Procedures ,4.1 Discovery and preclinical testing of markers and technologies ,Tomography x ray computed ,Dyspnea ,Emerging Infectious Diseases ,Good Health and Well Being ,Otorhinolaryngology ,Cough ,Immunoglobulin M ,Immunoglobulin G ,Dentistry ,RNA ,business ,Tomography, X-Ray Computed - Abstract
Author(s): Vinh, Daniel B; Zhao, Xiao; Kiong, Kimberley L; Guo, Theresa; Jozaghi, Yelda; Yao, Chris; Kelley, James M; Hanna, Ehab Y | Abstract: BackgroundTesting for SARS-CoV-2 is important for decision making prior to surgery in otolaryngology. An understanding of current and developing testing methods is important for interpreting test results.MethodsWe performed a literature review of current evidence surrounding SARS-CoV-2 diagnostic testing highlighting its utility, limitations, and implications for otolaryngologists.ResultsThe currently accepted RT-PCR test for SARS-CoV-2 has varying sensitivity according to which subsite of the aerodigestive tract is sampled. Nasal swab sensitivities appear to be about 70%. Chest CT imaging for screening purposes is not currently recommended.ConclusionDue to the current sensitivity of RT-PCR based testing for SARS-CoV-2, a negative test cannot rule out COVID-19. Full PPE should be worn during high-risk procedures such as aerosol generating procedures even if testing is negative. Patients who test positive during screening should have their surgeries postponed if possible until asymptomatic and have tested negative for SARS-CoV-2.
- Published
- 2020
26. Water conditioning for floricultural crops
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James D Kelley
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Agronomy ,Conditioning ,Environmental science - Published
- 2020
27. Multiphase Assembly of Small Molecule Microcrystalline Peptide Hydrogel Allows Immunomodulatory Combination Therapy for Long-Term Heart Transplant Survival
- Author
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Nimit L. Patel, Lixin Fan, Georg J. Furtmüller, Yun Xing Wang, Yichuan Zhang, Jason R. Stagno, Christopher C. Lai, Byoung Chol Oh, Poulami Majumder, Joel P. Schneider, Marcos Iglesias, Giorgio Raimondi, James A. Kelley, Caroline Andrews, and Gerald Brandacher
- Subjects
Drug ,Combination therapy ,medicine.medical_treatment ,media_common.quotation_subject ,Peptide ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,Article ,Biomaterials ,Immunomodulation ,Mice ,medicine ,Animals ,Humans ,General Materials Science ,media_common ,chemistry.chemical_classification ,Tofacitinib ,Chemistry ,fungi ,Hydrogels ,General Chemistry ,Immunotherapy ,021001 nanoscience & nanotechnology ,Small molecule ,0104 chemical sciences ,Microcrystalline ,Self-healing hydrogels ,Cancer research ,Heart Transplantation ,0210 nano-technology ,Peptides ,Biotechnology - Abstract
Combination therapies that target multiple pathways involved in immune rejection of transplants hold promise for patients in need of restorative surgery. Herein, a non-interacting multiphase molecular assembly approach is developed to crystallize tofacitinib, a potent JAK1/3 inhibitor, within a shear-thinning self-assembled fibrillar peptide hydrogel network. The resulting Microcrystalline Tofacitinib Hydrogel (MTH) can be syringe-injected directly to the grafting site during surgery to locally deliver the small molecule. The rate of drug delivered from MTH is largely controlled by the dissolution of the encapsulated microcrystals. A single application of MTH, in combination with systemically delivered CTLA4-Ig, a co-stimulation inhibitor, affords significant graft survival in mice receiving heterotopic heart transplants. Locoregional studies indicate that the local delivery of tofacitinib at the graft site enabled by MTH is required for the observed enhanced graft survival.
- Published
- 2020
28. Outline for a future psychiatry: the transcendent meaning model (TMM)
- Author
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James L. Kelley
- Subjects
Psychiatry ,Social psychology (sociology) ,Medical model ,medicine.medical_specialty ,2019-20 coronavirus outbreak ,media_common.quotation_subject ,Models, Psychological ,Human being ,030227 psychiatry ,03 medical and health sciences ,Psychiatry and Mental health ,0302 clinical medicine ,Blueprint ,medicine ,Individual person ,Humans ,Ideology ,Sociology ,Meaning (existential) ,030217 neurology & neurosurgery ,media_common - Abstract
The now-dominant medical model of psychiatry has recently been challenged by the post-psychiatry movement. However, the former discounts the agential or subjective aspect of the human being; the latter misses the axiological aspect. A new model is proposed-the Transcendent Meaning Model (TMM)-that nests the individual person within the social (the interperson), and the social within the transcendent or ideological. The study concludes that TMM, with its integration of the personal, the social and the religious-ideological with the material, is a viable blueprint for a future psychiatry that can address some of the current model's vulnerabilities.
- Published
- 2020
29. Steely Dan’s Donald Fagen: A Case of Mistaken Self-Identity, Corrected by Self-Reformulation
- Author
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James L. Kelley
- Subjects
Psychoanalysis ,Category mistake ,Modernity ,media_common.quotation_subject ,Object relations theory ,Identity (social science) ,Reality principle ,Sociology ,Meaning (existential) ,Romance ,Ideal (ethics) ,media_common - Abstract
Throughout Donald Fagen’s life, he used the concept of bohemianism to position himself vis-a-vis his family, peers, and the mainstream culture as a whole. A psychobiographical examination of the subject with an object relations emphasis found that Fagen used his role as a successful musician to confer on himself a sense of legitimacy and to distance himself from the strictures of conventional, “bourgeois” existence. However, by the end of the first phase of his band Steely Dan’s recording career, Fagen found himself in a musical, romantic, and social dead end, his bohemianism’s promise of self-contained aesthetic completion being revealed as a mistaking of the ideal for the real. This chapter shows that Fagen recovered meaning in life, and thus a multilayered positivity, through psychotherapy, which led to the singer’s reentry into the worlds of music, family, and friendship by tempering the perfectionism and isolationism concealed within his bohemian self-image. Ironically, Fagen’s reality principle gained in strength as he loosened his grip on his mistaken self-identification as a bohemian; Fagen’s self-reformulation late in life allowed him to turn a category error about the artist’s role in modernity into a positive adaptation to a society that requires an adult to play multiple, often contradictory, roles.
- Published
- 2020
30. Preoperative autologous blood collection before bone marrow harvests in haploidentical related donors: is it justified?
- Author
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Fernando Martinez, Ashok Tholpady, James T. Kelley, and Komal Arora
- Subjects
Adult ,Male ,medicine.medical_specialty ,Blood management ,Adolescent ,Immunology ,Autologous blood ,Blood Donors ,Survey result ,030204 cardiovascular system & hematology ,Hemoglobin levels ,Blood Transfusion, Autologous ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,Bone Marrow ,Internal medicine ,medicine ,Humans ,Immunology and Allergy ,Blood Transfusion ,Preoperative anemia ,Child ,Aged ,Retrospective Studies ,Hepatitis ,business.industry ,Hematology ,Middle Aged ,medicine.disease ,medicine.anatomical_structure ,Donation ,Female ,Bone marrow ,business ,030215 immunology - Abstract
Background With the increasing safety of allogeneic blood supply and declining need for transfusion due to patient blood management, the practice of preoperative autologous donation (PAD) continues to decline. The practice gained popularity during the 1980s and 1990s with the emergence of transfusion-transmitted human immunodeficiency virus and hepatitis C. At the peak of this public concern, the National Marrow Donor Program recommended that marrow donors have 1 to 3 autologous units of blood collected before their marrow harvest to minimize the likelihood of allogeneic transfusion. After three decades, the practice remains prevalent in marrow donors. We aimed to study the efficacy of PAD in healthy marrow donors. Study design and methods PADs performed before marrow harvest in healthy donors at our center between January 2013 and July 2015 were reviewed. The utilization of autologous units and decrease in hemoglobin levels due to PAD and marrow harvest were studied. Similar practices were assessed in the rest of the United States through a brief survey. Results Of a total of 262 autologous units collected from 136 donors, 25.2% were wasted. Ninety-nine percent of the marrow donors received at least 1 unit of blood irrespective of the need. PAD contributed to preoperative anemia, exposing three donors to allogeneic blood transfusion. The survey results showed a mixed response with some institutions continuing and others not practicing PAD. Conclusion PADs are not justified in healthy marrow donors as they expose them to a risk of preoperative anemia and hence a greater risk of transfusion.
- Published
- 2018
31. Gay Faulkner: Uncovering a Homosexual Presence in Yoknapatawpha and Beyond by Phillip Gordon
- Author
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James B. Kelley
- Subjects
General Earth and Planetary Sciences ,General Environmental Science - Published
- 2019
32. Exploring the influence of indololactone structure on selectivity for binding to the C1 domains of PKCα, PKCε, and RasGRP
- Author
-
Lucía Gandolfi Donadío, James A. Kelley, Xiaoling Zhou, Lia Cynthia Garcia, Christopher C. Lai, Megan L. Peach, Nancy E. Lewin, Maria Julieta Comin, Peter M. Blumberg, and Eleonora Elhalem
- Subjects
0301 basic medicine ,Indoles ,Protein Kinase C-alpha ,Protein family ,Stereochemistry ,Guanine ,Clinical Biochemistry ,Pharmaceutical Science ,Protein Kinase C-epsilon ,Biochemistry ,Article ,Lactones ,Structure-Activity Relationship ,03 medical and health sciences ,Bryostatins ,chemistry.chemical_compound ,Protein Domains ,indololactone ,Drug Discovery ,cancer ,Guanine Nucleotide Exchange Factors ,Humans ,RasGRP ,C1 domain ,Molecular Biology ,Protein kinase C ,Diacylglycerol kinase ,Indole test ,Chemistry ,Ligand ,Otras Ciencias Químicas ,Organic Chemistry ,Ciencias Químicas ,Small molecule ,DNA-Binding Proteins ,Molecular Docking Simulation ,030104 developmental biology ,Molecular Medicine ,CIENCIAS NATURALES Y EXACTAS ,Protein Binding - Abstract
C1 domain-containing proteins, such as protein kinase C (PKC), have a central role in cellular signal transduction. Their involvement in many diseases, including cancer, cardiovascular disease, and immunological and neurological disorders has been extensively demonstrated and has prompted a search for small molecules to modulate their activity. By employing a diacylglycerol (DAG)-lactone template, we have been able to develop ultra potent analogs of diacylglycerol with nanomolar binding affinities approaching those of complex natural products such as phorbol esters and bryostatins. One current challenge is the development of selective ligands capable of discriminating between different protein family members. Recently, structure-activity relationship studies have shown that the introduction of an indole ring as a DAG-lactone substituent yielded selective Ras guanine nucleotide-releasing protein (RasGRP1) activators when compared to PKCα and PKCε. In the present work, we examine the effects of ligand selectivity relative to the orientation of the indole ring and the nature of the DAG-lactone template itself. Our results show that the indole ring must be attached to the lactone moiety through the sn-2 position in order to achieve RasGRP1 selectivity. Fil: Elhalem, Eleonora. Instituto Nacional de Tecnología Industrial; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Gandolfi Donadío, Lucía. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Instituto Nacional de Tecnología Industrial; Argentina Fil: Zhou, Xiaoling. National Cancer Institute; Estados Unidos Fil: Lewin, Nancy E.. National Cancer Institute; Estados Unidos Fil: Garcia, Lia Cynthia. Instituto Nacional de Tecnología Industrial; Argentina Fil: Lai, Christopher C.. National Institutes of Health; Estados Unidos Fil: Kelley, James A.. National Institutes of Health; Estados Unidos Fil: Peach, Megan L.. National Institutes of Health; Estados Unidos Fil: Blumberg, Peter M.. National Cancer Institute; Estados Unidos Fil: Comin, Maria Julieta. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Instituto Nacional de Tecnología Industrial; Argentina
- Published
- 2017
33. Cancer type predicts alloimmunization following RhD-incompatible RBC transfusions
- Author
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Dawen Sui, Fernando J. Martinez, Ashok Tholpady, Benjamin Lichtiger, Jing Ning, Komal Arora, and James M. Kelley
- Subjects
education.field_of_study ,medicine.medical_specialty ,Acute leukemia ,business.industry ,Incidence (epidemiology) ,Immunology ,Population ,Hematology ,030204 cardiovascular system & hematology ,Logistic regression ,Clinical trial ,03 medical and health sciences ,0302 clinical medicine ,medicine.anatomical_structure ,Antigen ,Internal medicine ,ABO blood group system ,medicine ,Immunology and Allergy ,education ,business ,Sensitization ,030215 immunology - Abstract
BACKGROUND Immunosuppressed, RhD-negative oncology patients tend to have lower rates of sensitization to the D antigen when they receive transfusion with RhD-positive blood components. Clinical factors associated with alloimmunization to the D antigen in RhD-negative oncology patients when they receive transfusion with RhD-positive red blood cells (RBCs) have not been well defined. STUDY DESIGN AND METHODS This was a 4-year, retrospective analysis identifying RhD-negative oncology patients who received RhD-positive RBCs and were not previously alloimmunized to the D antigen. Age, sex, race, ABO group, primary oncology diagnosis, and numbers of RhD-incompatible RBC transfusions were recorded. The association between antibody formation and clinical factors was studied. The incidence of alloanti-D was calculated from a subsequent antibody-detection test performed at least 28 days after receipt of the first transfusion of RhD-positive RBCs. RESULTS In total, 545 RhD-negative oncology patients received 4295 RhD-positive RBC transfusions. Of these, 76 (14%) became alloimmunized to the D antigen. Diagnosis type was the only factor significantly associated with responder status. The logistic regression model indicated that patients who had myelodysplastic syndrome or solid malignancies were more likely to be responders than those who had acute leukemia. CONCLUSION We measured a 14% sensitization rate to the D antigen in our RhD-negative oncology population. The rate of alloimmunization was higher in patients who had solid cancers (22.6%) or myelodysplastic syndrome (23%) compared with those who had other hematologic malignancies (7%). Knowledge of diagnoses that predispose to RhD alloimmunization enables better utilization of RhD-negative RBCs during times of shortage.
- Published
- 2017
34. 'I Have to Be All Things to All People': Jim Jones, Nurture Failure, and Apocalypticism
- Author
-
James L. Kelley
- Subjects
Psychoanalysis ,Apocalypticism ,media_common.quotation_subject ,Schema (psychology) ,Object relations theory ,Psychobiography ,Religious organization ,Sociology ,Dream ,Ambivalence ,Nature versus nurture ,media_common - Abstract
In 1978, Jim Jones and over 900 of his followers perished in what has been called “The Jonestown Massacre”. This study uses methods of psychobiography and objection relations theory to account for Jones’ lifelong ambivalence toward those to whom he acted as caregiver. The author proposes a psychological schema he names “nurture failure” to account for Jim Jones’ style of leadership, which mixed solicitude with violence in the context of a religious organization that promised to right all of society’s wrongs. The means by which this utopia was to be brought about became more and more extreme until the infamous murder/suicide shattered the dream for good. The study’s findings expand our understanding of the motivational dynamics that undergird religious leaders’ often Januslike relations to their followers.
- Published
- 2019
35. Alternatives to Blood Products
- Author
-
James M. Kelley
- Subjects
business.industry ,Medicine ,business - Published
- 2019
36. Experimental and Chemoinformatics Study of Tautomerism in a Database of Commercially Available Screening Samples
- Author
-
Joseph J. Barchi, Marc C. Nicklaus, Waruna Yapamudiyansel, James A. Kelley, Laura Guasch, and Megan L. Peach
- Subjects
Informatics ,Databases, Factual ,Database ,010405 organic chemistry ,Computer science ,General Chemical Engineering ,General Chemistry ,Library and Information Sciences ,010402 general chemistry ,computer.software_genre ,01 natural sciences ,Tautomer ,Article ,0104 chemical sciences ,Computer Science Applications ,Set (abstract data type) ,Isomerism ,Cheminformatics ,Organic Chemicals ,computer - Abstract
We investigated how many cases of the same chemical sold as different products (at possibly different prices) occurred in a prototypical large aggregated database and simultaneously tested the tautomerism definitions in the chemoinformatics toolkit CACTVS. We applied the standard CACTVS tautomeric transforms plus a set of recently developed ring–chain transforms to the Aldrich Market Select (AMS) database of 6 million screening samples and building blocks. In 30 000 cases, two or more AMS products were found to be just different tautomeric forms of the same compound. We purchased and analyzed 166 such tautomer pairs and triplets by 1H and 13C NMR to determine whether the CACTVS transforms accurately predicted what is the same “stuff in the bottle”. Essentially all prototropic transforms with examples in the AMS were confirmed. Some of the ring–chain transforms were found to be too “aggressive”, i.e. to equate structures with one another that were different compounds.
- Published
- 2016
37. Reading TO KILL A MOCKINGBIRD and GO SET A WATCHMAN as Palimpsest
- Author
-
James B. Kelley
- Subjects
Literature ,Literature and Literary Theory ,business.industry ,media_common.quotation_subject ,Art ,Racism ,Education ,Civil rights ,Reading (process) ,medicine ,Palimpsest ,medicine.symptom ,Set (psychology) ,business ,Intertextuality ,media_common ,Confusion - Abstract
In a review posted to NPR a day before Harper Lee's novel went on sale, Maureen Corrigan wrote: “Go Set a Watchman is a troubling confusion of a novel, politically and artistically, beginning with ...
- Published
- 2016
38. Online brand community: through the eyes of Self-Determination Theory
- Author
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Dana L. Alden and James B. Kelley
- Subjects
Economics and Econometrics ,Sociology and Political Science ,Communication ,Brand awareness ,05 social sciences ,Opinion leadership ,Advertising ,Structural equation modeling ,Brand engagement ,Normative social influence ,Brand community ,Interactivity ,0502 economics and business ,050211 marketing ,Marketing ,Psychology ,050203 business & management ,Self-determination theory - Abstract
Purpose – The purpose of this paper to use Self-Determination Theory (SDT) to explain the online brand community (OBC) identity internalization process through brand website interactivity. Secondary purpose of the research is to explore the role of several individual difference factors and brand-specific constructs in predicting brand website interactivity. Design/methodology/approach – This study proposes the OBC motivation development continuum of brand website interactivity. Thus, a national panel was collected by a reputable online survey firm and a structural equation model was used to test the proposed model. Findings – The authors examined four brand-related antecedents and mediators (brand engagement in self-concept, susceptibility of normative influence, opinion leadership, and consumer innovativeness) and found evidence of the differing roles that brand engagement in self-concept and purposive motives play as mediators to brand website interactivity. Practical implications – Marketing managers can use the proposed model as a useful tool for understanding ways to target and motivate segment specific consumers in ways that will increase the effectiveness of managers’ OBC building strategies. Originality/value – This study utilized SDT to explain the internalization process of brand website interactivity. Further, several individual difference factors were explored as antecedents and mediators of brand website interactivity.
- Published
- 2016
39. Simulated Attention-Tracking Methodologies: An Examination of Measurement Efficacy
- Author
-
Mark Lang, Kelly Moore, and James B. Kelley
- Subjects
Marketing ,Empirical data ,Computer science ,05 social sciences ,Tracing ,Test (assessment) ,0502 economics and business ,050211 marketing ,Product (category theory) ,Tracking (education) ,Business and International Management ,Situational ethics ,050203 business & management ,Consumer behaviour ,Food Science - Abstract
This study introduces and examines a simulated attention-tracking methodology as an emerging technique to improve the study of in-store shopper behavior and decision making. To assess the viability of this new methodology, we examine its efficacy in producing consumer behavior data consistent with results predicted by the marketing literature. Empirical data across five grocery categories are used to examine the influence of personal, product, and situational differences on external information search. Findings show that the attention-tracking methodology is able to demonstrate expected results in almost all cases. The methodology is also able to provide a more complete view of external information search through tracing the observed search behavior preceding decision making. This proof of methodology responds directly to calls in the marketing and retailing literature to test new and emerging methodologies in support of research on in-store marketing and shopper behavior. Findings also provide ma...
- Published
- 2016
40. Relationship between MMP Expression and Virulence of Dengue Virus Type-2 in Infected Mosquito and Mammalian Cells
- Author
-
James F. Kelley, Aucha Sachair, Natthanej Luplertlop, Pornsawan Leaungwutiwong, and Akanitt Jittmittraphap
- Subjects
Electrophoresis ,0301 basic medicine ,Microbiology (medical) ,Virulence ,Biology ,Dengue virus ,medicine.disease_cause ,Asymptomatic ,Cell Line ,Dengue fever ,Microbiology ,Pathogenesis ,03 medical and health sciences ,medicine ,Animals ,Antibody-dependent enhancement ,Dengue vaccine ,Hydrolysis ,General Medicine ,Dengue Virus ,Viral Load ,medicine.disease ,Macaca mulatta ,Virology ,Culicidae ,030104 developmental biology ,Infectious Diseases ,Matrix Metalloproteinase 9 ,Cell culture ,Gelatin ,Matrix Metalloproteinase 2 ,medicine.symptom - Abstract
Dengue virus infections are mostly asymptomatic but can produce a mild, self-limiting acute febrile illness, dengue fever, or a life threatening severe illness, dengue hemorrhagic fever. Dengue hemorrhagic fever is associated with increased vascular permeability partly as a result of elevated levels of matrix metalloproteinases (MMPs). We characterized MMP-2 and MMP-9 production in mosquito and mammalian cells after infection with three strains of dengue virus type-2 (D2-) ranging in virulence: 16681, the prototype New Guinea C (NGC), and PDK-53 vaccine strain. These strains were used to test variations in viral properties in vaccine candidates and confirm the production of MMP as a possible marker for virulence. A zymogram gelatinolytic activity assay was used to assess MMP-2 and MMP-9 production. We found that dengue-infected mosquito and mammalian cell lines had unique MMP-2 and MMP-9 production patterns depending on the virulence of the infecting dengue strain and the duration infection. MMP levels were highest after infection with the most virulent strain D2-16681, followed by the prototype NGC strain, in both cell lines. The MMP levels appeared to correspond with the relative amounts of infectious virions produced later in infection. Our findings improve our understanding of dengue pathogenesis and may facilitate the selection of markers to further the development of dengue vaccines.
- Published
- 2016
41. Transfusion Reactions in Pediatric and Young Adult Hematopoietic Stem Cell Transplant and Oncology Patients
- Author
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Priti Tewari, Sajad Khazal, Mira A. Kohorst, James M. Kelley, Benjamin Mescher, Demetrios Petropoulos, and Kris M. Mahadeo
- Subjects
Transplantation ,medicine.medical_specialty ,education.field_of_study ,Chemotherapy ,business.industry ,medicine.medical_treatment ,Population ,Hematology ,Hematopoietic stem cell transplantation ,medicine.disease ,Umbilical cord ,Leukemia ,medicine.anatomical_structure ,Internal medicine ,Cryoprecipitate ,medicine ,Young adult ,Aplastic anemia ,education ,business - Abstract
Background Patients undergoing chemotherapy and especially hematopoietic stem cell transplantation (HSCT) require frequent transfusions, and thus, transfusion reaction (TR) vigilance is critical in this population. The reported incidence of TRs across all patients is 2%, and pediatric patients may experience 2-2.6 times more reactions than adults. However, the TR profile may differ in the immunocompromised population. There is a paucity of data in this area, as pediatric oncology and HSCT patients are often excluded from TR studies. Our goals were to assess the prevalence and describe TRs among immunocompromised pediatric patients and to improve recognition of TRs across this population. Methods Pediatric clinical providers completed a TR training module in May – June, 2019. A single-institution retrospective review was conducted. All TRs in patients aged less than 25 years were reviewed over a 3-month period from July 1, 2019 to October 1, 2019. Results Over a 3-month period, 1,786 transfusions were administered in our designated population. Of those, 50.4% were platelets, 44.0% were red blood cells (RBC), 3.4% were cryoprecipitate, 1.4% were thawed plasma, and 0.8% were granulocytes. Those undergoing HSCT consumed 27.7% of total transfusions. Of all transfusions, there were 48 (2.7%) reported as possible TRs by nursing. Of those, 30 (1.7% of all transfusions) were adjudicated as true TRs. Fourteen (46.7%) of these true TRs were in patients with leukemia, 9 (30.0%) with HSCT, 5 (16.7%) with solid tumors, and 2 (6.7%) with aplastic anemia. Of the 9 reactions in HSCT patients, 4 occurred in allogeneic transplant recipients (3 umbilical cord blood and one matched unrelated donor) and 5 were in those receiving autologous HSCT. In HSCT patients, 1.8% of transfusions resulted in TRs compared to 1.6% in non-HSCT patients. Of the products triggering reactions, platelets accounted for 22 TRs (73.3%) and RBCs accounted for 8 TRs (26.7%). Of all 30 TRs, 15 (50%) were classified as febrile non-hemolytic transfusion reactions (FNHTR), 14 (46.7%) were considered allergic reactions, and 1 (3.3%) was diagnosed as transfusion-associated circulatory overload. Pre-medication was given in 22 (76.7%) of transfusions causing reactions. Of the 18 reports that were not adjudicated as true TRs, most (n=15) were generated for fever, but deemed unrelated to transfusion. Conclusions Our baseline analysis revealed a higher prevalence than our historical institutional prevalence (1.7% vs. 1.3%), consistent with higher rates of TRs in the pediatric population, but lower than the 2% quoted in the literature, suggesting either underreporting or a different TR phenotype in this population. This population had a higher prevalence of FNHTR than the general pediatric population (50.0% vs. 31.5%). High rates of pre-medication and comorbidities (resulting in fevers) may influence TR presentation in this population.
- Published
- 2020
42. Fifteen-Year Journey to High Reliability in Pathology and Laboratory Medicine
- Author
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Keyur P. Patel, Lavinia P. Middleton, Victor G. Prieto, Mark J. Routbort, Elizabeth A. Wagar, Alejandro Contreras, John Bingham, Ron A. Phipps, James M. Kelley, Michael Riben, and L. Jeffrey Medeiros
- Subjects
Automation, Laboratory ,Pathology ,medicine.medical_specialty ,Quality management ,Pathology, Clinical ,business.industry ,Health Policy ,media_common.quotation_subject ,Best practice ,Psychological intervention ,Medical laboratory ,Reproducibility of Results ,Clinical Laboratory Services ,History, 20th Century ,Ambulatory Care Facilities ,History, 21st Century ,Quality Improvement ,Early adopter ,Patient safety ,Excellence ,Health care ,Medicine ,Curriculum ,business ,media_common - Abstract
Many high-reliability organizations in industries outside of health care have sustained high levels of excellence and prevention of harm while managing complex systems and risk. To date, no health care organizations has organized its efforts to achieve highly reliable results despite several decades of improvement science. Laboratorians were early adopters of quality initiatives and process improvements. In the late 1990s, the Division of Pathology and Laboratory Medicine at The University of Texas MD Anderson Cancer Center embarked on a major effort to improve quality and patient safety and to reduce waste. This article describes the institution’s journey toward approaching high reliability with the intent to share not only the tools and best practices, but also the ongoing reassessment of the problems detected on the journey. The authors hope that their experience will help the reader develop interventions to adapt in their own environment to facilitate more optimal patient care.
- Published
- 2018
43. Neighbor-directed histidine N (τ)-alkylation: A route to imidazolium-containing phosphopeptide macrocycles
- Author
-
Terrence R. Burke, Jung-Eun Park, James A. Kelley, Wen-Jian Qian, Robert A. Grant, Kyung S. Lee, Michael B. Yaffe, and Christopher C. Lai
- Subjects
Stereochemistry ,Chemistry ,Phosphopeptide ,Organic Chemistry ,Biophysics ,Cationic polymerization ,Chemical biology ,General Medicine ,Crystal structure ,Alkylation ,Biochemistry ,Biomaterials ,Organic chemistry ,Peptide mimetic ,Acid group ,Histidine - Abstract
Our recently discovered, selective, on-resin route to N(τ)-alkylated imidazolium-containing histidine residues affords new strategies for peptide mimetic design. In this, we demonstrate the use of this chemistry to prepare a series of macrocyclic phosphopeptides, in which imidazolium groups serve as ring-forming junctions. Interestingly, these cationic moieties subsequently serve to charge-mask the phosphoamino acid group that directed their formation. Neighbor-directed histidine N(τ)-alkylation opens the door to new families of phosphopeptidomimetics for use in a range of chemical biology contexts.
- Published
- 2015
44. Molecular Genotyping of Human Papillomavirus L1 Gene in Low-Risk and High-Risk Populations in Bangkok
- Author
-
James F. Kelley, Pannamas Maneekan, Nathamon Kosoltanapiwat, Busara Bamrungsak, Akanitt Jittmittraphap, Pornsawan Leaungwutiwong, and Thareerat Kalambaheti
- Subjects
Microbiology (medical) ,medicine.medical_specialty ,Cross-sectional study ,business.industry ,Public health ,Public Health, Environmental and Occupational Health ,HPV infection ,virus diseases ,Dermatology ,medicine.disease ,Virology ,female genital diseases and pregnancy complications ,Men who have sex with men ,Infectious Diseases ,Environmental health ,Heterosexuality ,Genotype ,medicine ,Human Papillomavirus DNA Test ,business ,Genotyping Techniques - Abstract
Background Human papillomavirus (HPV) infections in Thailand are a public health concern but information on HPV infection in sex workers and men who have sex with men (MSM) is limited. The aim of this study was to measure the prevalence and genotype distribution of HPV among low- and high-risk, HIV-negative populations.
- Published
- 2015
45. Reactive species involved in the regioselective photooxidation of heptamethine cyanines
- Author
-
James A. Kelley, Roger R. Nani, Martin J. Schnermann, and Joseph Ivanic
- Subjects
chemistry.chemical_classification ,Reactive oxygen species ,Singlet oxygen ,Photodissociation ,Regioselectivity ,General Chemistry ,Photochemistry ,Polyene ,Photobleaching ,Article ,chemistry.chemical_compound ,chemistry ,Molecule ,Organic chemistry ,Cyanine - Abstract
Heptamethine cyanines are important near-IR fluorophores used in many fluorescence applications. Despite this utility, these molecules are susceptible to light-promoted reactions (photobleaching) involving photochemically generated reactive oxygen species (ROS). Here, we have sought to define key chemical aspects of this nearly inescapable process. Near-IR photolysis of a model heptamethine cyanine leads to the regioselective oxidative cleavage of the characteristic polyene. We report the first quantitative analysis of the major reaction pathway following either photolysis or exposure to candidate ROS. These studies clearly indicate that only singlet oxygen (1O2), and not other feasible ROS, recapitulates the direct photolysis pathway. Computational studies were employed to investigate the regioselectivity of the oxidative cleavage process, and the theoretical ratio is comparable to observed experimental values. These results provide a more complete picture of heptamethine cyanine photooxidation, and provide insight for the design of improved compounds for future applications.
- Published
- 2015
46. Vanished Twins and Misdiagnosed Sex: A Case Report with Implications in Prenatal Counseling Using Noninvasive Cell-Free DNA Screening
- Author
-
George F. Henning, Alan Adelman, James Fitzhugh Kelley, and Anthony Ambrose
- Subjects
Male ,medicine.medical_specialty ,Pathology ,Prenatal counseling ,Genetic Counseling ,Trisomy ,Prenatal care ,Dna testing ,Ultrasonography, Prenatal ,03 medical and health sciences ,Fetus ,0302 clinical medicine ,Pregnancy ,Prenatal Diagnosis ,medicine ,Humans ,Genetic Testing ,030212 general & internal medicine ,Diagnostic Errors ,Vanishing twin ,Sex Chromosomes ,030219 obstetrics & reproductive medicine ,Obstetrics ,business.industry ,Public Health, Environmental and Occupational Health ,DNA ,Fetal Resorption ,Sequence Analysis, DNA ,Androgen-Insensitivity Syndrome ,Aneuploidy ,medicine.disease ,Cell-free fetal DNA ,Pregnancy, Twin ,Female ,Uterine Hemorrhage ,Family Practice ,business - Abstract
Cell-free DNA testing is a recently introduced method for screening pregnant women for fetal trisomy, which is associated with some common significant genetic diseases, as well as the sex of the fetus. The case described here demonstrates the connection between the ultrasound "vanishing twin" phenomenon and the misdiagnosis of prenatal sex using cell-free DNA testing.
- Published
- 2016
47. Unequivocal determination of caulamidines A and B: application and validation of new tools in the structure elucidation tool box
- Author
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Xing-Cong Li, Yizhou Liu, Kirk R. Gustafson, Dennis J. Milanowski, Michael T. Davies-Coleman, Josep Saurí, James A. Kelley, Larry A. Walker, R. Thomas Williamson, Shabana I. Khan, Kirill A. Blinov, Heidi R. Bokesch, Naoya Oku, Laura K. Cartner, Yuanqing Ding, Daneel Ferreira, Gary E. Martin, and James B. McMahon
- Subjects
Chemical substance ,010405 organic chemistry ,Drug discovery ,Stereochemistry ,Chemistry ,Structure (category theory) ,Total synthesis ,ComputerApplications_COMPUTERSINOTHERSYSTEMS ,General Chemistry ,010402 general chemistry ,01 natural sciences ,0104 chemical sciences ,Residual chemical shift anisotropy ,Heteronuclear molecule ,Computational chemistry ,Residual dipolar coupling ,Anisotropy - Abstract
Newly described NMR experimental approaches can provide valuable structural details and a complementary means of structure verification., Ambiguities and errors in the structural assignment of organic molecules hinder both drug discovery and total synthesis efforts. Newly described NMR experimental approaches can provide valuable structural details and a complementary means of structure verification. The caulamidines are trihalogenated alkaloids from a marine bryozoan with an unprecedented structural scaffold. Their unique carbon and nitrogen framework was deduced by conventional NMR methods supplemented by new experiments that define 2-bond heteronuclear connectivities, reveal very long-range connectivity data, or visualize the 35,37Cl isotopic effect on chlorinated carbons. Computer-assisted structural elucidation (CASE) analysis of the spectroscopic data for caulamidine A provided only one viable structural alternative. Anisotropic NMR parameters, specifically residual dipolar coupling and residual chemical shift anisotropy data, were measured for caulamidine A and compared to DFT-calculated values for the proposed structure, the CASE-derived alternative structure, and two energetically feasible stereoisomers. Anisotropy-based NMR experiments provide a global, orthogonal means to verify complex structures free from investigator bias. The anisotropic NMR data were fully consistent with the assigned structure and configuration of caulamidine A. Caulamidine B has the same heterocyclic scaffold as A but a different composition and pattern of halogen substitution. Caulamidines A and B inhibited both wild-type and drug-resistant strains of the malaria parasite Plasmodium falciparum at low micromolar concentrations, yet were nontoxic to human cells.
- Published
- 2017
48. False-positive HIV nucleic acid amplification testing during CAR T-cell therapy
- Author
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James N. Kochenderfer, George M. Viola, Chitra Hosing, Micah Bhatti, Ella J. Ariza-Heredia, Bruno Palma Granwehr, and James M. Kelley
- Subjects
0301 basic medicine ,Microbiology (medical) ,medicine.medical_treatment ,T-Lymphocytes ,Cell- and Tissue-Based Therapy ,HIV Infections ,Hiv testing ,Article ,Viral vector ,03 medical and health sciences ,0302 clinical medicine ,Neoplasms ,Nucleic Acids ,Medicine ,Humans ,business.industry ,HIV ,General Medicine ,Immunotherapy ,Middle Aged ,Virology ,Chimeric antigen receptor ,Receptors, Antigen ,030104 developmental biology ,Infectious Diseases ,Positive HIV ,030220 oncology & carcinogenesis ,Nucleic acid ,CAR T-cell therapy ,Female ,business - Abstract
Advancements in immunotherapy have opened a new era in oncology, to include genetic modification of human T-cells to express a chimeric antigen receptor (CAR) that enables targeted tumor recognition (Kochenderfer et al., 2015; Lee et al., 2015; Maus and Levine 2016; Rosenberg et al., 2008). Herein, we report a false-positive HIV testing in a patient who had undergone CAR T-cell therapy created with a lentiviral vector.
- Published
- 2017
49. Mono-anionic phosphopeptides produced by unexpected histidine alkylation exhibit high plk1 polo-box domain-binding affinities and enhanced antiproliferative effects in hela cells
- Author
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Wen-Jian Qian, Kyung S. Lee, Suk-Youl Park, Daniel Lim, James A. Kelley, Jung-Eun Park, Michael B. Yaffe, Christopher C. Lai, Terrence R. Burke, and Ki Won Lee
- Subjects
chemistry.chemical_classification ,biology ,Stereochemistry ,Organic Chemistry ,Biophysics ,Polo kinase ,Peptide ,General Medicine ,Pivaloyloxymethyl ,biology.organism_classification ,Biochemistry ,Affinities ,Biomaterials ,HeLa ,chemistry.chemical_compound ,chemistry ,Phosphoserine ,Phosphothreonine ,Histidine - Abstract
Binding of polo-like kinase 1 (Plk1) polo-box domains (PBDs) to phosphothreonine (pThr)/phosphoserine (pSer)-containing sequences is critical for the proper function of Plk1. Although high-affinity synthetic pThr-containing peptides provide starting points for developing PBD-directed inhibitors, to date the efficacy of such peptides in whole cell assays has been poor. This potentially reflects limited cell membrane permeability arising, in part, from the di-anionic nature of the phosphoryl group or its mimetics. In our current article we report the unanticipated on-resin N(τ)-alkylation of histidine residues already bearing a N(π)- alkyl group. This resulted in cationic imidazolium-containing pThr peptides, several of which exhibit single-digit nanomolar PBD-binding affinities in extracellular assays and improved antimitotic efficacies in intact cells. We enhanced the cellular efficacies of these peptides further by applying bio-reversible pivaloyloxymethyl (POM) phosphoryl protection. New structural insights presented in our current study, including the potential utility of intramolecular charge masking, may be useful for the further development of PBD-binding peptides and peptide mimetics.
- Published
- 2014
50. Endothelial cells in dengue hemorrhagic fever
- Author
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James F. Kelley and Anon Srikiatkhachorn
- Subjects
Pharmacology ,Dengue hemorrhagic fever ,Endothelial Cells ,virus diseases ,Dengue Virus ,Biology ,Dengue virus ,medicine.disease ,medicine.disease_cause ,Antiviral Agents ,Article ,Dengue fever ,Endothelial stem cell ,Tissue culture ,Immune system ,Virus antigen ,Virology ,Immunology ,medicine ,Animals ,Humans ,Endothelium, Vascular ,Severe Dengue ,Endothelial dysfunction - Abstract
Therapies to prevent or reverse endothelial dysfunction and vascular leak found in dengue hemorrhagic fever (DHF) have not been identified. In this review we summarize dengue viruses and the spectrum of human disease and highlight evidence of endothelial cell dysfunction in DHF based on studies in patients and mouse and tissue culture models. Evidence suggests that both virus antigen and host immune response, can cause endothelial cell dysfunction and weaken endothelial barrier integrity. We suggest possible therapeutic interventions and highlight how therapies targeting altered endothelial function might be evaluated in animal models and in patients with DHF.
- Published
- 2014
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