80 results on '"Jaime Martínez-Castillo"'
Search Results
2. Eco-friendly, compact, and cost-efficient triboelectric nanogenerator for renewable energy harvesting and smart motion sensing
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Enrique Delgado-Alvarado, Jaime Martínez-Castillo, Enrique A. Morales-González, José Amir González-Calderón, Edgar F. Armendáriz- Alonso, Gustavo M. Rodríguez-Liñán, Ricardo López-Esparza, José Hernández-Hernández, Ernesto A. Elvira-Hernández, and Agustín L. Herrera-May
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Eco-friendly materials ,Energy harvesting ,Green energy ,Nopal powder ,Sustainable energy ,Triboelectric nanogenerator ,Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
In recent years, the growth of Internet of Things devices has increased the use of sustainable energy sources. An alternative technology is offered by triboelectric nanogenerators (TENGs) that can harvest green energy and convert it into electrical energy. Herein, we assessed three different nopal powder types that were used as triboelectric layers of eco-friendly and sustainable TENGs for renewable energy harvesting from environmental vibrations and powering electronic devices. These nanogenerators were fabricated using waste and recycled materials with a compact design for easy transportation and collocation on non-homogeneous surfaces of different vibration or motion sources. In addition, these TENGs have advantages such as high output performance, stable output voltage, lightweight, low-cost materials, and a simple fabrication process. These nanogenerators use the contact-separation mode between two triboelectric layers to convert the vibration energy into electrical energy. TENG with the best output performance is based on dehydrated nopal powder, generating an output power density of 2.145 mWm−2 with a load resistance of 39.97 MΩ under 3g acceleration and 25 Hz operating frequency. The proposed TENGs have stable output voltages during 22500 operating cycles. These nanogenerators can light 116 ultra-bright blue commercial LEDs and power a digital calculator. Also, the TENGs can be used as a chess clock connected to a mobile phone app for smart motion sensing. These nanogenerators can harvest renewable vibration energy and power electronic devices, sensors, and smart motion sensing.
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- 2024
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3. Simplified Models to Assess the Mechanical Performance Parameters of Stents
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Juan P. Toledo, Jaime Martínez-Castillo, Diego Cardenas, Enrique Delgado-Alvarado, Marco Osvaldo Vigueras-Zuñiga, and Agustín L. Herrera-May
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stent ,FEM ,simplified model ,ischemic heart disease ,shell elements ,FDA ,Technology ,Biology (General) ,QH301-705.5 - Abstract
Ischemic heart disease remains a leading cause of mortality worldwide, which has promoted extensive therapeutic efforts. Stenting has emerged as the primary intervention, particularly among individuals aged 70 years and older. The geometric specifications of stents must align with various mechanical performance criteria outlined by regulatory agencies such as the Food and Drug Administration (FDA). Finite element method (FEM) analysis and computational fluid dynamics (CFD) serve as essential tools to assess the mechanical performance parameters of stents. However, the growing complexity of the numerical models presents significant challenges. Herein, we propose a method to determine the mechanical performance parameters of stents using a simplified FEM model comprising solid and shell elements. In addition, a baseline model of a stent is developed and validated with experimental data, considering parameters such as foreshortening, radial recoil, radial recoil index, and radial stiffness of stents. The results of the simplified FEM model agree well with the baseline model, decreasing up to 80% in computational time. This method can be employed to design stents with specific mechanical performance parameters that satisfy the requirements of each patient.
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- 2024
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4. In Vitro Conservation and Genetic Stability in Vanilla planifolia Jacks.
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José R. Bautista-Aguilar, Lourdes G. Iglesias-Andreu, Jaime Martínez-Castillo, Marco A. Ramírez-Mosqueda, and Matilde M. Ortiz-García
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abscisic acid ,temperature ,genetic polymorphism ,molecular markers ,Plant culture ,SB1-1110 - Abstract
Vanilla planifolia Jacks. is a species of great economic importance, since vanillin, a compound highly valued in the food and pharmaceutical industry, is extracted from its pods. This species is in the category of special protection, so it is important to take actions for its conservation and to maintain the genetic stability of the conserved germplasm. An adequate way to achieve this is through the minimal growth in vitro conservation techniques. The present work aimed to establish an in vitro conservation protocol for vanilla germplasm that allows the genetic stability of the conserved material. For the establishment of the minimal growth in vitro conservation protocol: two concentrations of basal Murashige and Skoog (MS) medium (50% and 100%), two incubation temperatures (4 and 22 °C) and two concentrations of abscisic acid (ABA) (3 and 5 mg⋅L−1) were evaluated. To evaluate the genetic stability of the germplasms used in this study (cultivated, wild, and V. insignis morphotypes) by analyzing the profiles of molecular markers SSR (simple sequence repeats) and ISSR (inter simple sequence repeats). The MS medium (100%) supplemented with 3 mg⋅L−1 of ABA and incubated at 22 °C, was the best treatment for the in vitro conservation of Vanilla spp. Compared with the control treatment, it allowed us to obtain smaller shoots (1.17 × 0.17 cm), which showed high genetic stability, given by the low percentages of polymorphism detected in morphotypes cultivated and wild (SSR 0%, ISSR 2%) and V. insignis (SSR 0%, ISSR 0%). We conclude the usefulness of the established protocol to conserve the genetic variation of the evaluated Vanilla germplasm.
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- 2021
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5. Genetic fingerprinting and aflatoxin production of Aspergillus section Flavi associated with groundnut in eastern Ethiopia
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Abdi Mohammed, Paola C. Faustinelli, Alemayehu Chala, Mashilla Dejene, Chemeda Fininsa, Amare Ayalew, Chris O. Ojiewo, David A. Hoisington, Victor S. Sobolev, Jaime Martínez-Castillo, and Renee S. Arias
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Aflatoxin ,Aspergillus ,Genetic diversity ,Peanut ,Insertion/deletion markers ,Microbiology ,QR1-502 - Abstract
Abstract Background Aspergillus species cause aflatoxin contamination in groundnut kernels, being a health threat in agricultural products and leading to commodity rejection by domestic and international markets. Presence of Aspergillus flavus and A. parasiticus colonizing groundnut in eastern Ethiopia, as well as presence of aflatoxins have been reported, though in this region, no genetic studies have been done of these species in relation to their aflatoxin production. Results In this study, 145 Aspergillus isolates obtained from groundnut kernels in eastern Ethiopia were genetically fingerprinted using 23 Insertion/Deletion (InDel) markers within the aflatoxin-biosynthesis gene cluster (ABC), identifying 133 ABC genotypes. Eighty-four isolates were analyzed by Ultra-Performance Liquid Chromatography (UPLC) for in vitro aflatoxin production. Analysis of genetic distances based on the approximately 85 kb-ABC by Neighbor Joining (NJ), 3D-Principal Coordinate Analysis (3D-PCoA), and Structure software, clustered the isolates into three main groups as a gradient in their aflatoxin production. Group I, contained 98% A. flavus, including L- and non-producers of sclerotia (NPS), producers of B1 and B2 aflatoxins, and most of them collected from the lowland-dry Babile area. Group II was a genetic admixture population of A. flavus (NPS) and A. flavus S morphotype, both low producers of aflatoxins. Group III was primarily represented by A. parasiticus and A. flavus S morphotype isolates both producers of B1, B2 and G1, G2 aflatoxins, and originated from the regions of Darolabu and Gursum. The highest in vitro producer of aflatoxin B1 was A. flavus NPS N1436 (77.98 μg/mL), and the highest producer of aflatoxin G1 was A. parasiticus N1348 (50.33 μg/mL), these isolates were from Gursum and Darolabu, respectively. Conclusions To the best of our knowledge, this is the first study that combined the use of InDel fingerprinting of the ABC and corresponding aflatoxin production capability to describe the genetic diversity of Aspergillus isolates from groundnut in eastern Ethiopia. Three InDel markers, AFLC04, AFLC08 and AFLC19, accounted for the main assignment of individuals to the three Groups; their loci corresponded to aflC (pksA), hypC, and aflW (moxY) genes, respectively. Despite InDels within the ABC being often associated to loss of aflatoxin production, the vast InDel polymorphism observed in the Aspergillus isolates did not completely impaired their aflatoxin production in vitro.
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- 2021
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6. Consequences of introgression and gene flow on the genetic structure and diversity of Lima bean (Phaseolus lunatus L.) in its Mesoamerican diversity area
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Mauricio Heredia-Pech, Mariana Chávez-Pesqueira, Matilde M. Ortiz-García, Rubén Humberto Andueza-Noh, María Isabel Chacón-Sánchez, and Jaime Martínez-Castillo
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SNPs markers ,Mayan milpa ,Yucatan Peninsula ,Wild-weedy-crop complexes ,Wild-crop introgression ,Medicine ,Biology (General) ,QH301-705.5 - Abstract
We evaluated the role of gene flow and wild-crop introgression on the structure and genetic diversity of Lima bean (Phaseolus lunatus) in the Yucatan Peninsula, an important Mesoamerican diversity area for this crop, using a genotyping-by-sequencing approach (15,168 SNP markers) and two scales. At the local scale, STRUCTURE and NGSEP analyses showed predominantly crop-to-wild introgression, but also evidence of a bidirectional gene flow in the two wild-weedy-crop complexes studied (Itzinté and Dzitnup). The ABBA-BABA tests showed a higher introgression in Itzinté (the older complex) than in Dzitnup (the younger one); at the allelic level, the wild-crop introgression in Itzinté was similar in both directions, in Dzitnup it was higher from crop-to-wild; and at the chromosomal level, introgression in Itzinté was from wild-to-crop, whereas in Dzitnup it occured in the opposite direction. Also, we found HE values slightly higher in the domesticated accessions than in the wild ones, in both complexes (Itzinté: wild = 0.31, domesticated = 0.34; Dzinup: wild = 0.27, domesticated = 0.36), but %P and π estimators were higher in the wild accessions than in the domesticated ones. At a regional scale, STRUCTURE and MIGRATE showed a low gene flow, predominantly from crop-to-wild; and STRUCTURE, Neighbor-Joining and PCoA analyses indicated the existence of two wild groups and one domesticated group, with a marked genetic structure based in the existence of domesticated MI and wild MII gene pools. Also, at the regional scale, we found a higher genetic diversity in the wild accessions than in the domesticated ones, in all estimators used (e.g., HE = 0.27 and HE = 0.17, respectively). Our results indicate that gene flow and introgression are playing an important role at the local scale, but its consequences on the structure and genetic diversity of the Lima bean are not clearly reflected at the regional scale, where diversity patterns between wild and domesticated populations could be reflecting historical events.
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- 2022
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7. Comprehensive genomic resources related to domestication and crop improvement traits in Lima bean
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Tatiana Garcia, Jorge Duitama, Stephanie Smolenski Zullo, Juanita Gil, Andrea Ariani, Sarah Dohle, Antonia Palkovic, Paola Skeen, Clara Isabel Bermudez-Santana, Daniel G. Debouck, Jaime Martínez-Castillo, Paul Gepts, and Maria Isabel Chacón-Sánchez
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Science - Abstract
Lima bean is an important crop for improving food security in Latin America and elsewhere. Here, the authors assemble its genome, conduct population genomics analysis using genotyping-by-sequencing data, and identify differentially expressed genes between two pod developmental stages.
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- 2021
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8. Triboelectric and Piezoelectric Nanogenerators for Self-Powered Healthcare Monitoring Devices: Operating Principles, Challenges, and Perspectives
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Enrique Delgado-Alvarado, Jaime Martínez-Castillo, Luis Zamora-Peredo, Jose Amir Gonzalez-Calderon, Ricardo López-Esparza, Muhammad Waseem Ashraf, Shahzadi Tayyaba, and Agustín L. Herrera-May
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energy harvesting ,green energy ,internet of medical things ,monitoring healthcare devices ,piezoelectric nanogenerator ,triboelectric nanogenerator ,Chemistry ,QD1-999 - Abstract
The internet of medical things (IoMT) is used for the acquisition, processing, transmission, and storage of medical data of patients. The medical information of each patient can be monitored by hospitals, family members, or medical centers, providing real-time data on the health condition of patients. However, the IoMT requires monitoring healthcare devices with features such as being lightweight, having a long lifetime, wearability, flexibility, safe behavior, and a stable electrical performance. For the continuous monitoring of the medical signals of patients, these devices need energy sources with a long lifetime and stable response. For this challenge, conventional batteries have disadvantages due to their limited-service time, considerable weight, and toxic materials. A replacement alternative to conventional batteries can be achieved for piezoelectric and triboelectric nanogenerators. These nanogenerators can convert green energy from various environmental sources (e.g., biomechanical energy, wind, and mechanical vibrations) into electrical energy. Generally, these nanogenerators have simple transduction mechanisms, uncomplicated manufacturing processes, are lightweight, have a long lifetime, and provide high output electrical performance. Thus, the piezoelectric and triboelectric nanogenerators could power future medical devices that monitor and process vital signs of patients. Herein, we review the working principle, materials, fabrication processes, and signal processing components of piezoelectric and triboelectric nanogenerators with potential medical applications. In addition, we discuss the main components and output electrical performance of various nanogenerators applied to the medical sector. Finally, the challenges and perspectives of the design, materials and fabrication process, signal processing, and reliability of nanogenerators are included.
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- 2022
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9. Determining relevant traits for selecting landrace accessions of Phaseolus lunatus L. for insect resistance
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Roberto Rafael Ruiz-Santiago, Horacio Salómon Ballina-Gómez, Esau Ruiz-Sánchez, Jaime Martínez-Castillo, René Garruña-Hernández, and Rubén Humberto Andueza-Noh
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Lima bean ,Plant defense ,Leaf damage ,Seed yield ,Plant physiology ,Medicine ,Biology (General) ,QH301-705.5 - Abstract
Plant-insect interactions are a determining factor for sustainable crop production. Although plants can resist or tolerate herbivorous insects to varying degrees, even with the use of pesticides, insects can reduce plant net productivity by as much as 20%, so sustainable strategies for pest control with less dependence on chemicals are needed. Selecting plants with optimal resistance and photosynthetic traits can help minimize damage and maintain productivity. Here, 27 landrace accessions of lima beans, Phaseolus lunatus L., from the Yucatan Peninsula were evaluated in the field for morphological resistance traits, photosynthetic characteristics, insect damage and seed yield. Variation was found in physical leaf traits (number, area, and dry mass of leaves; trichome density, specific leaf thickness and hardness) and in physiological traits (photosynthetic rate, stomatal conductance, intercellular carbon, water-use efficiency, and transpiration). Five accessions (JMC1325, JMC1288, JMC1339, JMC1208 and JMC1264) had the lowest index for cumulative damage with the highest seed yield, although RDA analysis uncovered two accessions (JMC1339, JMC1288) with strong positive association of seed yield and the cumulative damage index with leaf production, specific leaf area (SLA) and total leaf area. Leaf traits, including SLA and total leaf area are important drivers for optimizing seed yield. This study identified 12 important morphological and physiological leaf traits for selecting landrace accessions of P. lunatus for high yields (regardless of damage level) to achieve sustainable, environmentally safe crop production.
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- 2021
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10. The Enhanced Fixed Point Method: An Extremely Simple Procedure to Accelerate the Convergence of the Fixed Point Method to Solve Nonlinear Algebraic Equations
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Uriel Filobello-Nino, Hector Vazquez-Leal, Jesús Huerta-Chua, Jaime Martínez-Castillo, Agustín L. Herrera-May, Mario Alberto Sandoval-Hernandez, and Victor Manuel Jimenez-Fernandez
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nonlinear algebraic equations ,exact solutions ,approximate solutions ,fixed point ,fixed point theorem ,fixed point iteration ,Mathematics ,QA1-939 - Abstract
This work proposes the Enhanced Fixed Point Method (EFPM) as a straightforward modification to the problem of finding an exact or approximate solution for a linear or nonlinear algebraic equation. The proposal consists of providing a versatile method that is easy to employ and systematic. Therefore, it is expected that this work contributes to breaking the paradigm that an effective modification for a known method has to be necessarily long and complicated. As a matter of fact, the method expresses an algebraic equation in terms of the same equation but multiplied for an adequate factor, which most of the times is just a simple numeric factor. The main idea is modifying the original equation, slightly changing it for others in such a way that both have the same solution. Next, the modified equation is expressed as a fixed point problem and the proposed parameters are employed to accelerate the convergence of the fixed point problem for the original equation. Since the Newton method results from a possible fixed point problem of an algebraic equation, we will see that it is relatively easy to get modified versions of the Newton method with orders of convergence major than two. We will see in this work the convenience of this procedure.
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- 2022
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11. Recent Progress of Nanogenerators for Green Energy Harvesting: Performance, Applications, and Challenges
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Enrique Delgado-Alvarado, Ernesto A. Elvira-Hernández, José Hernández-Hernández, Jesús Huerta-Chua, Héctor Vázquez-Leal, Jaime Martínez-Castillo, Pedro J. García-Ramírez, and Agustín L. Herrera-May
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energy harvesting ,green energy ,hybrid nanogenerators ,piezoelectric nanogenerator ,thermoelectric nanogenerators ,triboelectric nanogenerator ,Chemistry ,QD1-999 - Abstract
Natural sources of green energy include sunshine, water, biomass, geothermal heat, and wind. These energies are alternate forms of electrical energy that do not rely on fossil fuels. Green energy is environmentally benign, as it avoids the generation of greenhouse gases and pollutants. Various systems and equipment have been utilized to gather natural energy. However, most technologies need a huge amount of infrastructure and expensive equipment in order to power electronic gadgets, smart sensors, and wearable devices. Nanogenerators have recently emerged as an alternative technique for collecting energy from both natural and artificial sources, with significant benefits such as light weight, low-cost production, simple operation, easy signal processing, and low-cost materials. These nanogenerators might power electronic components and wearable devices used in a variety of applications such as telecommunications, the medical sector, the military and automotive industries, and internet of things (IoT) devices. We describe new research on the performance of nanogenerators employing several green energy acquisition processes such as piezoelectric, electromagnetic, thermoelectric, and triboelectric. Furthermore, the materials, applications, challenges, and future prospects of several nanogenerators are discussed.
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- 2022
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12. Gene Flow in Phaseolus Beans and Its Role as a Plausible Driver of Ecological Fitness and Expansion of Cultigens
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María Isabel Chacón-Sánchez, Jaime Martínez-Castillo, Jorge Duitama, and Daniel G. Debouck
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wild-weedy-crop complexes ,introgression genomic footprint ,crop diffusion ,center of diversity ,breeding system ,pollinator behavior ,Evolution ,QH359-425 ,Ecology ,QH540-549.5 - Abstract
The genus Phaseolus, native to the Americas, is composed of more than eighty wild species, five of which were domesticated in pre-Columbian times. Since the beginning of domestication events in this genus, ample opportunities for gene flow with wild relatives have existed. The present work reviews the extent of gene flow in the genus Phaseolus in primary and secondary areas of domestication with the aim of illustrating how this evolutionary force may have conditioned ecological fitness and the widespread adoption of cultigens. We focus on the biological bases of gene flow in the genus Phaseolus from a spatial and time perspective, the dynamics of wild-weedy-crop complexes in the common bean and the Lima bean, the two most important domesticated species of the genus, and the usefulness of genomic tools to detect inter and intraspecific introgression events. In this review we discuss the reproductive strategies of several Phaseolus species, the factors that may favor outcrossing rates and evidence suggesting that interspecific gene flow may increase ecological fitness of wild populations. We also show that wild-weedy-crop complexes generate genetic diversity over which farmers are able to select and expand their cultigens outside primary areas of domestication. Ultimately, we argue that more studies are needed on the reproductive biology of the genus Phaseolus since for most species breeding systems are largely unknown. We also argue that there is an urgent need to preserve wild-weedy-crop complexes and characterize the genetic diversity generated by them, in particular the genome-wide effects of introgressions and their value for breeding programs. Recent technological advances in genomics, coupled with agronomic characterizations, may make a large contribution.
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- 2021
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13. The Hemodynamic Mass Action of a Central Pattern Generator
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Mayra Moreno-Castillo, Roberto Meza, Jesús Romero-Vaca, Nayeli Huidobro, Abraham Méndez-Fernández, Jaime Martínez-Castillo, Pedro Mabil, Amira Flores, and Elias Manjarrez
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central pattern generation ,hemodynamics ,BOLD ,DC-photoplethysmography ,fNIRS ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
The hemodynamic response is a neurovascular and metabolic process in which there is rapid delivery of blood flow to a neuronal tissue in response to neuronal activation. The functional magnetic resonance imaging (fMRI) and the functional near-infrared spectroscopy (fNIRS), for instance, are based on the physiological principles of such hemodynamic responses. Both techniques allow the mapping of active neuronal regions in which the neurovascular and metabolic events are occurring. However, although both techniques have revolutionized the neurosciences, they are mostly employed for neuroimaging of the human brain but not for the spinal cord during functional tasks. Moreover, little is known about other techniques measuring the hemodynamic response in the spinal cord. The purpose of the present study was to show for the first time that a simple optical system termed direct current photoplethysmography (DC-PPG) can be employed to detect hemodynamic responses of the spinal cord and the brainstem during the functional activation of the spinal central pattern generator (CPG). In particular, we positioned two DC-PPG systems directly on the brainstem and spinal cord during fictive scratching in the cat. The optical DC-PPG systems allowed the trial-by-trial recording of massive hemodynamic signals. We found that the “strength” of the flexor-plus-extensor motoneuron activities during motor episodes of fictive scratching was significantly correlated to the “strengths” of the brainstem and spinal DC-PPG signals. Because the DC-PPG was robustly detected in real-time, we claim that such a functional signal reflects the hemodynamic mass action of the brainstem and spinal cord associated with the CPG motor action. Our findings shed light on an unexplored hemodynamic observable of the spinal CPGs, providing a proof of concept that the DC-PPG can be used for the assessment of the integrity of the human CPGs.
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- 2020
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14. Triboelectric Energy Harvester Based on Stainless Steel/MoS2 and PET/ITO/PDMS for Potential Smart Healthcare Devices
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Carlos Gallardo-Vega, Octavio López-Lagunes, Omar I. Nava-Galindo, Arxel De León, Jorge Romero-García, Luz Antonio Aguilera-Cortés, Jaime Martínez-Castillo, and Agustín L. Herrera-May
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triboelectric energy harvesting ,internet of things ,molybdenum disulfide (MoS2) ,polydimethylsiloxane (PDMS) ,PET/ITO ,smart healthcare device ,Chemistry ,QD1-999 - Abstract
The smart healthcare devices connected with the internet of things (IoT) for medical services can obtain physiological data of risk patients and communicate these data in real-time to doctors and hospitals. These devices require power sources with a sufficient lifetime to supply them energy, limiting the conventional electrochemical batteries. Additionally, these batteries may contain toxic materials that damage the health of patients and environment. An alternative solution to gradually substitute these electrochemical batteries is the development of triboelectric energy harvesters (TEHs), which can convert the kinetic energy of ambient into electrical energy. Here, we present the fabrication of a TEH formed by a stainless steel substrate (25 mm × 15 mm) coated with a molybdenum disulfide (MoS2) film as top element and a polydimethylsiloxane (PDMS) film deposited on indium tin oxide coated polyethylene terephthalate substrate (PET/ITO). This TEH has a generated maximum voltage of 2.3 V and maximum output power of 112.55 μW using a load resistance of 47 kΩ and a mechanical vibration to 59.7 Hz. The proposed TEH could be used to power potential smart healthcare devices.
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- 2021
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15. Measurements of the Magnetic Field Variations Related with the Size of V-Shaped Notches in Steel Pipes
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J. Jesús Villegas-Saucillo, José Javier Díaz-Carmona, Marco A. Escarola-Rosas, Héctor Vázquez-Leal, Jaime Martínez-Castillo, and Agustín L. Herrera-May
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gas and oil pipeline network ,magnetic field variations ,metal magnetic memory method ,magnetometer ,non-destructive testing ,V-shaped notches ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Gas and oil pipeline networks require periodic inspections to detect cracks or notches that can cause industrial accidents and environmental contamination. For these inspections, the metal magnetic memory (MMM) method could be used as a non-destructive testing (NDT) technique, which does not need expensive equipment and high-skilled operators. However, more investigations are required to quantify the size and shape of defects in ferromagnetic pipes using the MMM signals. We present experimental measurements of MMM signals around five small V-shaped notches of an ASTM-A36 steel pipe using a three-axis magnetoresistive sensor. The V-shaped notches have different values of depth (500 µm, 1000 µm, 1500 µm, 2000 µm and 2500 µm) and width (1000 µm, 1500 µm, 2000 µm, 3000 µm and 3500 µm). We measured the variations of tangential and normal MMM signals around these defects and their relationships with the size of each defect. The first V-notch defect (500 μm depth and 1000 μm width) registers variations of the tangential and normal MMM signals of 14.32 μT ± 1.62 μT and 27.95 μT ± 1.14 μT, respectively. On the other hand, the fifth V-notch defect (2500 μm depth and 3500 μm width) has variations of the tangential and normal MMM signals of 68.75 μT ± 1.10 μT and 71.37 μT ± 0.72 μT, respectively. The MMM method could be used for real-time monitoring of V-shaped notches in steel pipes. This method does not require special treatment of steel pipes.
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- 2021
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16. Geographical Distribution of Wild Relatives of Mesoamerican Gene Pool of Lima Bean (Phaseolus lunatus L.) in Mexico
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Rubén H. Andueza-Noh, Luciana Camacho-Pérez, Jaime Martínez-Castillo, and Filogonio May-Pat
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Mejoramiento genético ,perturbación ,estrategia de conservación ,población silvestre ,Botany ,QK1-989 - Abstract
The Mesoamerican gene pool of wild Lima bean (Phaseolus lunatus L., Fabaceae) is an important source of genes for genetic improvement of the species. Is widely distributed from northern Mexico to northern Argentina. Reports in Mexico indicate that this gene pool is distributed from Sinaloa to Chiapas on the Pacific Coast and southern Tamaulipas to the Yucatan Peninsula on the Coast of Gulf of Mexico, as well as, in the Isthmus of Tehuantepec. However, despite the knowledge we have about the distribution of this gene pool, in Mexico there are still collecting gaps and unexplored regions. The objective of this study was to collect wild populations of Lima bean in Mexico to know its current distribution and establish management and conservation strategies. To do this, we collected within the natural distribution range of the Mesoamerican gene pool of Lima bean in Mexico, with the passport data was designed a geographical distribution map and assessed the conservation status of populations. Results indicated that wild populations of Lima bean have a wide geographical distribution localized mainly in tropical deciduous forest and semideciduous and elevations from zero to 2, 292 meters. In most wild population collected a low conservation status was observed, in consequence was proposed the development of strategies for in situ and ex situ conservation for wild populations with higher degree of erosion.
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- 2016
17. Diversidad y origen geográfico del recurso vegetal en los huertos familiares de Quintana Roo, México
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Jesus Kantún-Balam, Jose Salvador-Flores, Juan Tun-Garrido, Jorge Navarro-Alberto, Luis Arias-Reyes, and Jaime Martínez-Castillo
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huerto familiar, diversidad florística, origen geográfico, Quintana Roo. ,Botany ,QK1-989 - Abstract
El huerto familiar (HF) es un sistema agrícola que funciona como fuente de recursos naturales y sitio para el manejo y conservación de especies vegetales nativas e introducidas. Un ejemplo de su importancia se presenta en el área maya de la península de Yucatán, México. La conquista española es un aspecto fundamental en el desarrollo y evolución del HF, evento que favoreció la introducción de especies vegetales, lo que contribuyó a enriquecer y diversificar la flora del HF de la región. Actualmente, esta introducción es un proceso favorecido por la globalización comercial, fenómeno que ha generado cambios en el HF debido al abandono de las actividades del campo y a la búsqueda de recursos económicos fuera de éste. En la península de Yucatán se observa con mayor claridad en el estado de Quintana Roo, en donde el desarrollo socioeconómico ha favorecido que muchos campesinos mayas emigren de sus comunidades para buscar trabajo en las zonas turísticas. Para conocer el estado actual del recurso vegetal, se estudió la diversidad y origen geográfico de las especies vegetales presentes en el HF de Quintana Roo. Se caracterizaron 120 HF en tres regiones del estado: norte, maya y sur. Se registraron 449 especies correspondientes a 93 familias y 329 géneros. La familia mejor representada fue la Fabaceae con el 9.35% y el género mejor representado fueCitruscon el 2.0%. La región con mayor diversidad fue el norte (H’= 5,684). Las especies introducidas fueron principalmente de origen americano (65,8%). Recientemente, la globalización ha favorecido la introducción de especies de origen asiático, como el nim (Azadirachta indica) y el rambután (Nephelium lappaceum). Esto muestra la importancia de este fenómeno en la riqueza y diversidad actual de los huertos familiares de Quintana Roo.
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- 2015
18. Development of a Large Set of Microsatellite Markers in Zapote Mamey (Pouteria sapota (Jacq.) H.E. Moore & Stearn) and Their Potential Use in the Study of the Species
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Renée S. Arias, Jaime Martínez-Castillo, Victor S. Sobolev, Nasib H. Blancarte-Jasso, Sheron A. Simpson, Linda L. Ballard, Mary V. Duke, Xiaofen F. Liu, Brian M. Irish, and Brian E. Scheffler
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blast analysis ,founder effect ,genetic diversity ,germplasm ,domestication ,Mexico ,SSR markers ,genetic structure ,Organic chemistry ,QD241-441 - Abstract
Pouteria sapota is known for its edible fruits that contain unique carotenoids, as well as for its fungitoxic, anti-inflammatory and anti-oxidant activity. However, its genetics is mostly unknown, including aspects about its genetic diversity and domestication process. We did high-throughput sequencing of microsatellite-enriched libraries of P. sapota, generated 5223 contig DNA sequences, 1.8 Mbp, developed 368 microsatellites markers and tested them on 29 individuals from 10 populations (seven wild, three cultivated) from Mexico, its putative domestication center. Gene ontology BLAST analysis of the DNA sequences containing microsatellites showed potential association to physiological functions. Genetic diversity was slightly higher in cultivated than in the wild gene pool (HE = 0.41 and HE = 0.35, respectively), although modified Garza–Williamson Index and Bottleneck software showed evidence for a reduction in genetic diversity for the cultivated one. Neighbor Joining, 3D Principal Coordinates Analysis and assignment tests grouped most individuals according to their geographic origin but no clear separation was observed between wild or cultivated gene pools due to, perhaps, the existence of several admixed populations. The developed microsatellites have a great potential in genetic population and domestication studies of P. sapota but additional sampling will be necessary to better understand how the domestication process has impacted the genetic diversity of this fruit crop.
- Published
- 2015
- Full Text
- View/download PDF
19. Testing Domestication Scenarios of Lima Bean (Phaseolus lunatus L.) in Mesoamerica: Insights from Genome-Wide Genetic Markers
- Author
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María I. Chacón-Sánchez and Jaime Martínez-Castillo
- Subjects
approximate bayesian computation ,SNPs ,genotyping-by-sequencing ,linkage disequilibrium ,founder effects ,domestication bottlenecks ,Plant culture ,SB1-1110 - Abstract
Plant domestication can be seen as a long-term process that involves a complex interplay among demographic processes and evolutionary forces. Previous studies have suggested two domestication scenarios for Lima bean in Mesoamerica: two separate domestication events, one from gene pool MI in central-western Mexico and another one from gene pool MII in the area Guatemala-Costa Rica, or a single domestication from gene pool MI in central-western Mexico followed by post-domestication gene flow with wild populations. In this study we evaluated the genetic structure of the wild gene pool and tested these two competing domestication scenarios of Lima bean in Mesoamerica by applying an ABC approach to a set of genome-wide SNP markers. The results confirm the existence of three gene pools in wild Lima bean, two Mesoamerican gene pools (MI and MII) and the Andean gene pool (AI), and suggest the existence of another gene pool in central Colombia. The results indicate that although both domestication scenarios may be supported by genetic data, higher statistical support was given to the single domestication scenario in central-western Mexico followed by admixture with wild populations. Domestication would have involved strong founder effects reflected in loss of genetic diversity and increased LD levels in landraces. Genomic regions affected by selection were detected and these may harbor candidate genes related to domestication.
- Published
- 2017
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20. Differentiation and genetic diversity of Phaseolus lunatus wild populations from Chiapas, Mexico, and their genetic relationships with MI and MII groups
- Author
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Pedro Jesús Ruiz-Gil, Gabriel Chepe-Cruz, Rubén Humberto Andueza-Noh, Matilde Margarita Ortiz-García, and Jaime Martínez-Castillo
- Subjects
Genetic diversity ,genetic resources ,Lima bean ,microsatelites ,SSR markers ,wild relatives ,Botany ,QK1-989 - Abstract
Background. Understanding the genetic structure of wild relatives of domesticated species is crucial for its conservation and to elucidate the sites of crop domestication. Lima bean is one of the five domesticated Phaseolus species and Mexico is one of its centers of domestication. Recent studies showed the existence of two wild gene pools (MI and MII) of this species in Mexico and suggested that their genetic divergence occurred in southeast Mexico. Question. Did MI and MII groups diverged around the Isthmus of Tehuantepec, Mexico? Studied species. Lima bean: Neotropical plant species, herbaceous, with an annual/short life cycle and with autogamous tendency. Study site and years of study. Seven wild populations were collected in 2012 in the State of Chiapas, México, area underrepresented in previous studies. Methods. Genetic diversity and grouping patterns of collected populations and their relationship to MI and MII groups were analyzed at eight microsatellite loci. Results. High genetic structure (FST: 0.42 to 0.96) and a high level of genetic diversity (HE = 0.48) were found. The analyses, and presence of admixed populations in MI and MII, suggested that the genetic divergence of these groups is an ongoing process centered around the Isthmus of Tehuantepec. Conclusions. Our results support the hypothesis that MI and MII groups diverged around the Isthmus of Tehuantepec; however, sampling should be increased both at population and genomic levels, to determine the precise organization of the genetic diversity of wild P. lunatus from Mexico
- Published
- 2016
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21. Recent Advances of MEMS Resonators for Lorentz Force Based Magnetic Field Sensors: Design, Applications and Challenges
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Agustín Leobardo Herrera-May, Juan Carlos Soler-Balcazar, Héctor Vázquez-Leal, Jaime Martínez-Castillo, Marco Osvaldo Vigueras-Zuñiga, and Luz Antonio Aguilera-Cortés
- Subjects
Lorentz force ,magnetic field sensor ,MEMS ,resonators ,sensing technique ,Chemical technology ,TP1-1185 - Abstract
Microelectromechanical systems (MEMS) resonators have allowed the development of magnetic field sensors with potential applications such as biomedicine, automotive industry, navigation systems, space satellites, telecommunications and non-destructive testing. We present a review of recent magnetic field sensors based on MEMS resonators, which operate with Lorentz force. These sensors have a compact structure, wide measurement range, low energy consumption, high sensitivity and suitable performance. The design methodology, simulation tools, damping sources, sensing techniques and future applications of magnetic field sensors are discussed. The design process is fundamental in achieving correct selection of the operation principle, sensing technique, materials, fabrication process and readout systems of the sensors. In addition, the description of the main sensing systems and challenges of the MEMS sensors are discussed. To develop the best devices, researches of their mechanical reliability, vacuum packaging, design optimization and temperature compensation circuits are needed. Future applications will require multifunctional sensors for monitoring several physical parameters (e.g., magnetic field, acceleration, angular ratio, humidity, temperature and gases).
- Published
- 2016
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22. International Lima Bean Network: from the origin of the species to modern plant breeding
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Jaime Martínez-Castillo, Ademir S. F. Araujo, María I. Chacón-Sánchez, Luis G. Santos, Angela C. A. Lopes, Kimberly Gibson, Regina L. F. Gomes, Rubén H. Andueza-Noh, Elena Bitochi, Horacio S. Ballina-Gómez, Eduardo Peralta, Ernesto Ormeño-Orrillo, Luz Espinoza, Carlos Nieto, Angel Murillo, Eudaldo Jadán-Veriñas, Tatiana García, Jorge Duitama, Jonás A. Aguirre-Liguori, Andrea León-Cadena, Nora Castañeda-Alvarez, and Daniel G. Debouck
- Subjects
Genetics ,Plant Science ,Agronomy and Crop Science ,Ecology, Evolution, Behavior and Systematics - Published
- 2023
23. Possibilities of defect-size magnification for testing resistive-opens in nanometer technologies.
- Author
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Jose Luis Garcia-Gervacio, Jaime Martínez-Castillo, and Víctor H. Champac
- Published
- 2014
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24. Genetic diversity and erosion in lima bean (Phaseolus lunatus L.) in Northeast Brazil
- Author
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Jéssica Daniele Lustosa-Silva, Regina Lucia Ferreira-Gomes, Jaime Martínez-Castillo, Leonardo Castelo Branco Carvalho, Leonardo Furtado de Oliveira, Matilde Margarita Ortiz-García, Alba Gabriela Sánchez-Sosa, Geice Ribeiro da Silva, Marcones Ferreira Costa, Verônica Brito Silva, and Ângela Celis de Almeida Lopes
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Genetics ,Plant Science ,Agronomy and Crop Science ,Ecology, Evolution, Behavior and Systematics - Published
- 2022
25. Lima Bean International Network: From the origin to the plant breeding
- Author
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Jaime Martínez-Castillo, Ademir S. F. Araujo, María I. Chacón-Sánchez, Luis G. Santos, Angela C. A. Lopes, Kimberly Gibson, Regina L. F. Gomes, Rubén H. Andueza-Noh, Elena Bitochi, Horacio S. Ballina-Gómez, Eduardo Peralta, Ernesto Ormeño-Orrillo, Luz Espinoza, Carlos Nieto, Angel Murillo, Eudaldo Jadán-Veriñas, Tatiana García, Jorge Duitama, Jonás A. Aguirre-Liguori, Andrea León-Cadena, Nora Castañeda-Alvarez, and Daniel G. Debouck
- Abstract
Lima bean (Phaseolus lunatus L.) is the second most important domesticated species of Phaseolus in the world and could represent a precious alternative for food security and quality, as well as play a major role for sustainability in the face of climate change in Latin America and worldwide. Currently, many experts on conservation, domestication, genetic improvement, and plant-rhizosphere relationship of Lima bean have been working alone or in small groups. This situation has limited obtaining a greater benefit from their research and strongly prompts the study of the Lima bean worldwide. To increase the collaboration between experts in the study of the Lima bean, we present the Lima Bean International Network (LBIN). The main objectives of LBIN are to deepen the knowledge on this species and to promote its use worldwide. The success of LBIN will depend on the collaboration of the international scientific community interested in the study of Lima bean. Hence, we invite people from different sectors of society (researchers, producers, companies, NGOs, governments) to participate in this initiative. To get more information, you can visit https://www.cicy.mx/sitios/red-internacional-frijol-lima
- Published
- 2022
26. Enhancing Biomedical Images Using the UFIR Filters with Recursive Responses.
- Author
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Luis J. Morales-Mendoza, René Fabián Vázquez-Bautista, Mario Gonzalez-Lee, M. Ibarra-Manzano, Yuriy S. Shmaliy, and Jaime Martínez-Castillo
- Published
- 2013
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- View/download PDF
27. Voltage Regulation System for UHF RFID Tags.
- Author
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Jose Luis Garcia-Gervacio, Agustín Leobardo Herrera-May, Gregorio Zamora-Mejía, Jaime Martínez-Castillo, and Alejandro Díaz-Sánchez
- Published
- 2013
- Full Text
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28. Bridge defect detection in nanometer CMOS circuits using Low VDD and body bias.
- Author
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Hector Villacorta, Jose Luis Garcia-Gervacio, Víctor H. Champac, Sebastià A. Bota, Jaime Martínez-Castillo, and Jaume Segura 0001
- Published
- 2013
- Full Text
- View/download PDF
29. Enhancing ultrasound images using the recursive p-step unbiased FIR filter.
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Luis J. Morales-Mendoza, René Fabián Vázquez-Bautista, Celia Calderón-Ramón, Jaime Martínez-Castillo, Efrén Morales-Mendoza, and Yuriy S. Shmaliy
- Published
- 2012
- Full Text
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30. Bi-CMOS Opto-Electronic Reception System for Application in High-Frequencies.
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Jaime Martínez-Castillo, Alejandro Díaz-Sánchez, Alfonso Torres-Jácome, Roberto S. Murphy-Arteaga, and Jesús L. Finol
- Published
- 2004
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31. Comprehensive genomic resources related to domestication and crop improvement traits in Lima bean
- Author
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Andrea Ariani, Tatiana Garcia, María Isabel Chacón-Sánchez, Clara Isabel Bermudez-Santana, Paul Gepts, Jaime Martínez-Castillo, Juanita Gil, Sarah Dohle, Jorge Duitama, Paola Skeen, Daniel G. Debouck, Stephanie Smolenski Zullo, and Antonia Palkovic
- Subjects
0106 biological sciences ,0301 basic medicine ,Acclimatization ,General Physics and Astronomy ,Sequence assembly ,01 natural sciences ,Genome ,Domestication ,Convergent evolution ,RNA-Seq ,Phaseolus ,education.field_of_study ,Multidisciplinary ,Chromosome Mapping ,food and beverages ,Seeds ,Crops, Agricultural ,Agricultural genetics ,Plant domestication ,Climate Change ,Science ,Population ,Quantitative Trait Loci ,Argentina ,Crops ,Biology ,Genes, Plant ,Synteny ,Article ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,Genetic variation ,parasitic diseases ,Genetics ,education ,Mexico ,Agricultural ,Plant Dispersal ,Human Genome ,General Chemistry ,Plant ,biology.organism_classification ,Genome evolution ,Plant Breeding ,030104 developmental biology ,Genes ,Evolutionary biology ,010606 plant biology & botany - Abstract
Lima bean (Phaseolus lunatus L.), one of the five domesticated Phaseolus bean crops, shows a wide range of ecological adaptations along its distribution range from Mexico to Argentina. These adaptations make it a promising crop for improving food security under predicted scenarios of climate change in Latin America and elsewhere. In this work, we combine long and short read sequencing technologies with a dense genetic map from a biparental population to obtain the chromosome-level genome assembly for Lima bean. Annotation of 28,326 gene models show high diversity among 1917 genes with conserved domains related to disease resistance. Structural comparison across 22,180 orthologs with common bean reveals high genome synteny and five large intrachromosomal rearrangements. Population genomic analyses show that wild Lima bean is organized into six clusters with mostly non-overlapping distributions and that Mesomerican landraces can be further subdivided into three subclusters. RNA-seq data reveal 4275 differentially expressed genes, which can be related to pod dehiscence and seed development. We expect the resources presented here to serve as a solid basis to achieve a comprehensive view of the degree of convergent evolution of Phaseolus species under domestication and provide tools and information for breeding for climate change resiliency., Lima bean is an important crop for improving food security in Latin America and elsewhere. Here, the authors assemble its genome, conduct population genomics analysis using genotyping-by-sequencing data, and identify differentially expressed genes between two pod developmental stages.
- Published
- 2021
32. Development of nuclear microsatellite markers to facilitate germplasm conservation and population genetics studies of five groups of tropical perennial plants with edible fruits and shoots: rambutan (Nephelium lappaceum L.), sapodilla (Manilkara zapota (L.) P. Royen), lychee (Litchi chinensis Sonn.), mangosteen (Garcinia mangostana Linn. and Garcinia cochinchinensis (Lour.) Choisy) and bamboo (Bambusa vulgaris Schrad. ex J.C. Wendl and Guadua angustifolia Kunth)
- Author
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Valerie A. Orner, Linda L. Ballard, Renee S. Arias, Brian E. Scheffler, Victor S. Sobolev, Mary V. Duke, Xiaofen F. Liu, Jaime Martínez-Castillo, and Sheron A. Simpson
- Subjects
0106 biological sciences ,0301 basic medicine ,Germplasm ,Rambutan ,Bamboo ,food.ingredient ,biology ,Plant Science ,Bambusa vulgaris ,Manilkara ,biology.organism_classification ,01 natural sciences ,03 medical and health sciences ,Horticulture ,030104 developmental biology ,food ,Genetics ,Garcinia mangostana ,Nephelium ,Garcinia ,Agronomy and Crop Science ,Ecology, Evolution, Behavior and Systematics ,010606 plant biology & botany - Abstract
Simple sequence repeat (SSR) enriched libraries for five groups of tropical perennial plants with edible fruits and shoots were prepared and sequenced in a GS-FLX Roche 454: sapodilla (Manilkara zapota (L.) P. Royen), lychee (Litchi chinensis Sonn.), mangosteen (Garcinia mangostana Linn. and G. cochinchinensis (Lour.) Choisy), rambutan (Nephelium lappaceum L.), and bamboo (Bambusa vulgaris Schrad. ex J.C. Wendl and Guadua angustifolia Kunth). For SSR development, these species were organized by their common names in five groups. A total of 3870 SSR primer sets were designed, using capillary electrophoresis 1872 nuclear SSRs were tested on 4 to 10 DNA samples within each plant group, that is 384 loci for each of the four groups of fruit trees and 336 loci for the bamboo group. Only 7.9% of the primers tested did not result in amplification. All 1872 SSRs are provided, we highlight 178 SSRs (between 26 and 47 per group) considered top-quality polymorphic SSRs that amplified all the samples, had strong fluorescence signal, presented no stutters and showed minimum non-specific amplification or background fluorescence. A total of 66,057 contig sequences were submitted to GenBank Database. Markers presented here will be useful not only for conservation efforts in banks of germplasm, but also for in-depth analysis of population genetics which usually requires evaluation of large number of loci.
- Published
- 2020
33. Modeling of Conduction Mechanisms in Ultrathin Films of Al2O3 Deposited by ALD
- Author
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Silvestre Salas-Rodríguez, Joel Molina-Reyes, Jaime Martínez-Castillo, Rosa M. Woo-Garcia, Agustín L. Herrera-May, and Francisco López-Huerta
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aluminum oxide ,current model ,leakage current ,conduction mechanisms ,MIS capacitor ,tunneling ,ALD ,Computer Networks and Communications ,Hardware and Architecture ,Control and Systems Engineering ,Signal Processing ,Electrical and Electronic Engineering ,defects - Abstract
We reported the analysis and modeling of some conduction mechanisms in ultrathin aluminum oxide (Al2O3) films of 6 nm thickness, which are deposited by atomic layer deposition (ALD). This modeling included current-voltage measurements to metal-insulator-semiconductor (MIS) capacitors with gate electrode areas of 3.6 × 10−5 cm2 and 6.4 × 10−5 cm2 at room temperature. The modeling results showed the presence of ohmic conduction, Poole Frenkel emission, Schottky emission, and trap-assisted tunneling mechanisms through the Al2O3 layer. Based on extracted results, we measured a dielectric conductivity of 5 × 10−15 S/cm at low electric fields, a barrier height at oxide/semiconductor interface of 2 eV, and an energy trap level into bandgap with respect to the conduction band of 3.11 eV. These results could be affected by defect density related to oxygen vacancies, dangling bonds, fixed charges, or interface traps, which generate conduction mechanisms through and over the dielectric energy barrier. In addition, a current density model is developed by considering the sum of dominant conduction mechanisms and results based on the finite element method for electronic devices, achieving a good match with experimental data.
- Published
- 2023
34. Impact of Late Pleistocene-Holocene climatic fluctuations on the phylogeographic structure and historical demographics of Zamia prasina (Cycadales: Zamiaceae)
- Author
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Jaime Alejandro Muñoz-López, L. F. Sánchez-Teyer, Matilde Margarita Ortiz-García, Ricardo Gaytán-Legaria, Andrew P. Vovides, Germán Carnevali, Jaime Martínez-Castillo, and Grecia Montalvo-Fernández
- Subjects
Geography ,Plant Science - Abstract
Background: Glacial periods during the Pleistocene have been hypothesized to have greatly influenced geographical patterns of genetic structure and demography of many tropical species. The Glacial Refugium Hypothesis proposes that, during cold, dry glacial periods, populations of moisture-affinities tropical species were restricted to sheltered, humid areas and that, during warmer and more humid interglacial periods, these populations expanded. Some mountain regions in the tropics acted as refugia during the cold, dry periods of the Pleistocene for several temperate forest taxa, which recolonized the humid areas farther north during the interglacial periods. Questions: (1) Did Late Pleistocene-Holocene climate changes affect the historical demophraphy of Zamia prasina ? (2) Does the historical distribution of Zamia prasina agree with the Glacial Refugium Hypothesis? Study species: Zamia prasina W.Bull. (Zamiaceae), the only cycad native to the Yucatan Peninsula Biotic Province (YPBP). Methods: Five individuals were collected in 23 populations and characterized using two DNA regions: plastid atpF-atpH , and nuclear ITS2. Genetic diversity, phylogeographic structure, historical demography, and potential distributions were assessed. Results: Our results showed moderately high genetic diversity and low, but significant, phylogeographic structure. Two genetic groups were identified, one in the eastern part of the Peninsula, the other in the western. The changes in historical demography suggest that Z. prasina experienced a population expansion following the warm conditions of the Holocene. Conclusions: The population dynamics of Zamia prasina are in accordance with the Glacial Refugium Hypothesis.
- Published
- 2019
35. Aspergillus Section Flavi, Need for a Robust Taxonomy
- Author
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Valerie A. Orner, Renee S. Arias, Victor S. Sobolev, and Jaime Martínez-Castillo
- Subjects
Author Reply ,Aspergillus ,biology ,business.industry ,computer.software_genre ,biology.organism_classification ,Geography ,Immunology and Microbiology (miscellaneous) ,Section (archaeology) ,Taxonomy (general) ,Genetics ,Artificial intelligence ,business ,Molecular Biology ,computer ,Natural language processing - Published
- 2021
36. Determining relevant traits for selecting landrace accessions of Phaseolus lunatus L. for insect resistance
- Author
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René Garruña-Hernández, Horacio S. Ballina-Gómez, Esaú Ruiz-Sánchez, Rubén H. Andueza-Noh, Roberto Rafael Ruiz-Santiago, and Jaime Martínez-Castillo
- Subjects
Stomatal conductance ,Seed yield ,Specific leaf area ,Plant physiology ,Lima bean ,Plant Science ,Biology ,General Biochemistry, Genetics and Molecular Biology ,food ,Plant defense ,Plant defense against herbivory ,Leaf damage ,Lima beans ,Agricultural Science ,Transpiration ,Ecology ,business.industry ,General Neuroscience ,fungi ,Pest control ,food and beverages ,General Medicine ,biology.organism_classification ,food.food ,Trichome ,Horticulture ,Medicine ,Phaseolus ,General Agricultural and Biological Sciences ,business ,Entomology - Abstract
Plant-insect interactions are a determining factor for sustainable crop production. Although plants can resist or tolerate herbivorous insects to varying degrees, even with the use of pesticides, insects can reduce plant net productivity by as much as 20%, so sustainable strategies for pest control with less dependence on chemicals are needed. Selecting plants with optimal resistance and photosynthetic traits can help minimize damage and maintain productivity. Here, 27 landrace accessions of lima beans, Phaseolus lunatus L., from the Yucatan Peninsula were evaluated in the field for morphological resistance traits, photosynthetic characteristics, insect damage and seed yield. Variation was found in physical leaf traits (number, area, and dry mass of leaves; trichome density, specific leaf thickness and hardness) and in physiological traits (photosynthetic rate, stomatal conductance, intercellular carbon, water-use efficiency, and transpiration). Five accessions (JMC1325, JMC1288, JMC1339, JMC1208 and JMC1264) had the lowest index for cumulative damage with the highest seed yield, although RDA analysis uncovered two accessions (JMC1339, JMC1288) with strong positive association of seed yield and the cumulative damage index with leaf production, specific leaf area (SLA) and total leaf area. Leaf traits, including SLA and total leaf area are important drivers for optimizing seed yield. This study identified 12 important morphological and physiological leaf traits for selecting landrace accessions of P. lunatus for high yields (regardless of damage level) to achieve sustainable, environmentally safe crop production.
- Published
- 2021
37. Management and Cultivation of the Huaya India (Melicoccus oliviformis Kunth) on the Yucatan Peninsula
- Author
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Jaime Martínez-Castillo, Mónica I. Jiménez-Rojas, Rubén H. Andueza-Noh, and Daniel Potter
- Subjects
0106 biological sciences ,Yucatan peninsula ,Melicoccus ,Perennial plant ,biology ,Ecology ,Plant Science ,Horticulture ,Sapindaceae ,biology.organism_classification ,01 natural sciences ,0104 chemical sciences ,010404 medicinal & biomolecular chemistry ,Ethnobotany ,Domestication ,010606 plant biology & botany - Abstract
The domestication of plants, an evolutionary process of importance worldwide, has been widely studied in annual species but very little in perennial species, especially fruit trees. Most studies of domestication have focused on the comparison of morphological characteristics between wild and cultivated populations and on patterns of evolution of phenotypic characteristics that are under selection, known as the domestication syndrome. The objective of this research was to investigate the domestication status of populations of Huaya India (Melicoccus oliviformis, Sapindaceae) in the Yucatan Peninsula using ethnobotanical and morphological evidence. The species is cultivated in both rural and urban communities in this area, and wild populations of Huaya India are found surrounding these sites. We gathered ethnobotanical data by conducting semi-structured interviews and through participatory observation. For each fruit, sugar content and morphological characteristics were measured in situ. The results show the Huaya India presents minimal differences between wild and cultivated fruits in characteristics that are often associated with domestication (weight, length, fruit diameter, exocarp thickness, and sugar content). We attribute these results to the unconscious management to which this species has been and continues to be subjected by the inhabitants of the Maya communities, but further study is needed to determine the extent to which the observed differences reflect genetic differences due to human selection, environmental effects, or a combination of the two.
- Published
- 2019
38. Microsatellite markers in Spanish lime (Melicoccus bijugatus Jacq., Sapindaceae), a neglected Neotropical fruit crop
- Author
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Rubén H. Andueza-Noh, Matilde M. Ortiz-García, Jaime Martínez-Castillo, Brian M. Irish, Renee S. Arias, and Brian E. Scheffler
- Subjects
0106 biological sciences ,0301 basic medicine ,Conservation genetics ,Genetic diversity ,Melicoccus ,Plant Science ,engineering.material ,Biology ,biology.organism_classification ,complex mixtures ,01 natural sciences ,Crop ,03 medical and health sciences ,Horticulture ,030104 developmental biology ,Genetic marker ,Genetics ,engineering ,Microsatellite ,Agronomy and Crop Science ,Ecology, Evolution, Behavior and Systematics ,Fruit tree ,010606 plant biology & botany ,Lime - Abstract
Spanish lime (Melicoccus bijugatus Jacq.) is a Neotropical fruit tree cultivated, mainly, in orchards for self-consumption or local sale. The genus Melicoccus includes other nine species with edible fruits, some of these species are at risk of extinction. Like for the vast majority of tropical fruit trees, there is no information on the genetic diversity of Spanish lime and its related species, and this is mostly due to the lack of molecular markers. The objectives of this study were to present the first microsatellite markers developed for Spanish lime, testing its usefulness on a sample of cultivated accessions, as well as its transferability to Huaya India (M. oliviformis). To do this, we performed high-throughput sequencing of microsatellite-enriched libraries of Spanish lime using Roche 454, assembled 9567 DNA contig sequences and identified 10,117 microsatellites. After screening 384 of those microsatellites on four DNA samples, 31 polymorphic markers were used to screen 25 accessions of Spanish lime and five of Huaya India collected in Yucatan, Mexico. Genetic diversity was low in Spanish lime (A = 20.61, HE = 0.38) and similar for both sexes of this species. Neighbor-Joining and PCoA analyses clearly discriminated between the two Melicoccus species studied. Nine of the markers showed unique alleles for Huaya India. The set of microsatellite markers developed has a great potential to generate information in relation to conservation genetics, improvement of elite cultivars and breeding programs for Spanish lime and related species.
- Published
- 2019
39. Consequences of introgression and gene flow on the genetic structure and diversity of Lima bean (Phaseolus lunatusL.) in its Mesoamerican diversity area
- Author
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Mauricio Heredia-Pech, Mariana Chávez-Pesqueira, Matilde M. Ortiz-García, Rubén Humberto Andueza-Noh, María Isabel Chacón-Sánchez, and Jaime Martínez-Castillo
- Subjects
General Neuroscience ,General Medicine ,General Agricultural and Biological Sciences ,General Biochemistry, Genetics and Molecular Biology - Abstract
We evaluated the role of gene flow and wild-crop introgression on the structure and genetic diversity of Lima bean (Phaseolus lunatus) in the Yucatan Peninsula, an important Mesoamerican diversity area for this crop, using a genotyping-by-sequencing approach (15,168 SNP markers) and two scales. At the local scale, STRUCTURE and NGSEP analyses showed predominantly crop-to-wild introgression, but also evidence of a bidirectional gene flow in the two wild-weedy-crop complexes studied (Itzinté and Dzitnup). The ABBA-BABA tests showed a higher introgression in Itzinté (the older complex) than in Dzitnup (the younger one); at the allelic level, the wild-crop introgression in Itzinté was similar in both directions, in Dzitnup it was higher from crop-to-wild; and at the chromosomal level, introgression in Itzinté was from wild-to-crop, whereas in Dzitnup it occured in the opposite direction. Also, we foundHEvalues slightly higher in the domesticated accessions than in the wild ones, in both complexes (Itzinté: wild = 0.31, domesticated = 0.34; Dzinup: wild = 0.27, domesticated = 0.36), but %Pandπestimators were higher in the wild accessions than in the domesticated ones. At a regional scale, STRUCTURE and MIGRATE showed a low gene flow, predominantly from crop-to-wild; and STRUCTURE, Neighbor-Joining and PCoA analyses indicated the existence of two wild groups and one domesticated group, with a marked genetic structure based in the existence of domesticated MI and wild MII gene pools. Also, at the regional scale, we found a higher genetic diversity in the wild accessions than in the domesticated ones, in all estimators used (e.g.,HE= 0.27 andHE= 0.17, respectively). Our results indicate that gene flow and introgression are playing an important role at the local scale, but its consequences on the structure and genetic diversity of the Lima bean are not clearly reflected at the regional scale, where diversity patterns between wild and domesticated populations could be reflecting historical events.
- Published
- 2022
40. Morphological diversity of Huaya India fruits (Melicoccus oliviformis Kunth) in the Maya Lowlands
- Author
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Jaime Martínez-Castillo, Gabriel R. Dzib, Horacio S. Ballina-Gómez, Mónica I. Jiménez-Rojas, Luis Latournerie-Moreno, Rubén H. Andueza-Noh, and Daniel Potter
- Subjects
0106 biological sciences ,0301 basic medicine ,Mesoamerica ,media_common.quotation_subject ,Population ,Plant Science ,01 natural sciences ,03 medical and health sciences ,Genetics ,Maya ,education ,Ecology, Evolution, Behavior and Systematics ,media_common ,Genetic diversity ,education.field_of_study ,Melicoccus ,biology ,business.industry ,Ecology ,Tropics ,biology.organism_classification ,030104 developmental biology ,Agriculture ,business ,Agronomy and Crop Science ,010606 plant biology & botany ,Diversity (politics) - Abstract
The Maya area in Mexico, historically a region of major cultural development in Mesoamerica, has been divided into the Maya Highlands and Maya Lowlands. The Yucatan Peninsula is part of the Maya Lowlands, which has a great diversity of plant genetic resources, including the Huaya India, a tropical perennial tree of the family Sapindaceae. Its fruit is greatly appreciated by the Maya people, but the genetic diversity of this species has not been studied. Here we evaluated the morphological diversity in fruits from eight populations of Huaya India from four representative cultural–geographic zones in the Maya Lowland communities of the Yucatan Peninsula to generate basic knowledge to support the conservation and use of the species. Two populations from each of the four cultural–geographic zones with 10 individuals per population and 15 fruits per individual were evaluated, and four qualitative and 11 quantitative morphological traits of fruits and seeds were measured. Results indicated a high morphological diversity organized in two groups based on fruit size and flavor characteristics. This study highlights the importance of the Maya culture in the generation and maintenance of diversity of the Huaya India, as well as the importance of initiating programs for the management, sustainable utilization and conservation of this species in the Maya Lowlands of Mexico.
- Published
- 2018
41. Short-distance barriers affect genetic variability ofRhizophora mangleL. in the Yucatan Peninsula
- Author
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Diana J. Cisneros-de la Cruz, Jorge A. Herrera-Silveira, Jaime Martínez-Castillo, Roberth Us-Santamaría, José Luis Andrade, Matilde M. Ortiz-García, and Laura Yáñez-Espinosa
- Subjects
0106 biological sciences ,0301 basic medicine ,education.field_of_study ,Genetic diversity ,geography.geographical_feature_category ,Ecology ,biology ,Population ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,humanities ,03 medical and health sciences ,030104 developmental biology ,Geography ,Peninsula ,Genetic structure ,Microsatellite ,Genetic variability ,Mangrove ,education ,Rhizophora mangle ,Ecology, Evolution, Behavior and Systematics ,Nature and Landscape Conservation - Abstract
The environmental variability at local scale results in different physiognomic types of mangrove forest. However, this variability has never been considered in studies of mangrove genetic variability. This study analyzed the genetic and morphological variability and structure of Rhizophora mangle at regional and local scales in the Yucatan Peninsula. Thirteen mangrove populations (eight scrub and five tall), located in seven sites, were sampled, and their morphological variability and relationship with the availability of phosphorus and salinity were analyzed. The diversity and genetic structure were estimated at different hierarchical levels with nine microsatellites, also Bayesian inference and Principal Coordinates Analysis were used. We found a great morphological variability of R. mangle that responded to local environmental variability and not to the precipitation gradient of the peninsula. The genetic diversity found in the peninsula was greater than that reported for other populations in Mexico and was grouped into two regions: the Gulf of Mexico and the Caribbean Sea. At a local scale, tall and scrub mangroves had significant genetic differentiation suggesting that ecological barriers promote genetic differentiation within sites. These results need to be considered in future population genetic studies and for mangrove management and conservation.
- Published
- 2018
42. Genetic diversity of Huaya India (Melicoccus oliviformis Kunth), a neglected Neotropical fruit crop
- Author
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Mónica I. Jiménez-Rojas, Jaime Martínez-Castillo, Daniel Potter, Matilde M. Ortiz-García, Renee S. Arias, Obed I. Noh-Ake, and Rubén H. Andueza-Noh
- Subjects
Crop ,Genetic diversity ,Melicoccus ,Geography ,biology ,Ecology ,Maya ,Population genetics ,Horticulture ,Domestication ,biology.organism_classification ,Fruit tree ,Gene flow - Abstract
Currently, some species of Sapindaceae are important fruit crops worldwide. The Huaya India (Meliccocus oliviformis, Sapindaceae) is a neglected Neotropical fruit tree consumed locally in the Maya Lowlands of Mexico, where it exists in both wild and domesticated forms. Our objective was to evaluate the genetic diversity of the Huaya India in its possible domestication area and thus generate knowledge that serves as the basis for a commercial management. A total of 450 individuals collected from 15 natural vegetation sites and 15 Maya villages, were characterized using nine microsatellite loci and population genetics approaches were applied. STRUCTURE, Neighbor-Joining and PCoA analyses suggested the existence of three main groups: 1) one composed by 14 natural vegetation sites, 2) one integrated by 10 Maya villages plus one natural vegetation site, 3) one composed by five Maya villages. At the species level, genetic differentiation was high (FST = 0.562) and gene flow was low (Nm = 0.395); between genetic groups, differentiation was low and gene flow was high. Genetic diversity was low at the level species (HE = 0.19) and higher in the group composed for only natural vegetation sites. When we considered only two groups (natural vegetation sites vs Maya villages) to explore a possible bottleneck as a consequence of human management, the natural vegetation sites showed higher, and significant, genetic diversity (HE = 0.231) than the Maya villages (HE = 0.152). This study can serve as a basis to develop management strategies for Huaya India in the Maya Lowlands of Mexico, but without compromising its conservation.
- Published
- 2021
43. Wild Vanilla planifolia and its relatives in the Mexican Yucatan Peninsula: Systematic analyses with ISSR and ITS
- Author
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Jaime Martínez Castillo, Alfredo Dorantes-Euan, Gabriel Dzib, Sara Villanueva-Viramontes, Mariana Hernández-Apolinar, and Germán Carnevali Fernández-Concha
- Subjects
0106 biological sciences ,biology ,Phylogenetic tree ,010604 marine biology & hydrobiology ,Plant Science ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Monophyly ,Vanilla planifolia ,Cladogram ,Sympatric speciation ,Genus ,Genetic structure ,Botany ,Threatened species - Abstract
Background: Vanilla planifolia , a threatened species, is distributed naturally in semi-deciduous and evergreen rain forests of southeastern Mexico and parts of Central America. In the wild, it is difficult to diagnose from another sympatric Vanilla species, and individuals with reproductive structures are usually required. Questions: Can ISSR discriminate wild individuals of Vanilla planifolia from other sympatric species of the genus? Can phylogenetic analyses of ITS recover the monophyly of V. planifolia and help identify Vanilla species? Studied species: The vanilla ( V. planifolia ), the second-most important economically spice in the world. Study site and years of study: Plant material was collected during 2014 in the Mexican Yucatan Peninsula. Methods: We analyzed 88 wild individuals of several Vanilla species. Individuals of five species of Vanilla reported for the region were used as reference. 84 ISSR loci were analyzed using three clustering methods. A phylogenetic inference using ITS was performed. Results: ISSR markers clearly discriminate wild Vanilla planifolia , finding definite genetic structure within the species. The three clustering methods identified genetic relationships with congruent patterns. Five groups were found and they corresponded with the species studied. Phylogenetic inference of ITS sequences supported the monophyly of the Vanilla and the resulting cladograms were coherent with the clustering pattern observed in the ISSR studies. Conclusions: Both ISSR and ITS analyses are able to identify V. planifolia . Molecular data suggest the presence of V. pompona and a new species of Vanilla in the Yucatan Peninsula.
- Published
- 2017
44. Genetic structure of Lima bean (Phaseolus lunatus L.) landraces grown in the Mayan area
- Author
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Jean-Pierre Baudoin, Rubén H. Andueza-Noh, Miriam M. Ferrer-Ortega, Jaime Martínez-Castillo, Luciana Camacho-Pérez, and Javier O. Mijangos-Cortés
- Subjects
0106 biological sciences ,Genetic diversity ,biology ,Mesoamerica ,business.industry ,Plant Science ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,food.food ,Crop ,food ,Agronomy ,Agriculture ,Botany ,Genetic structure ,Genetics ,Phaseolus ,Lima beans ,business ,Genetic erosion ,Agronomy and Crop Science ,Ecology, Evolution, Behavior and Systematics ,010606 plant biology & botany - Abstract
Lima bean (Phaseolus lunatus L.) is an important crop in the Mayan culture. The Mayan area, considered as a main center of Mesoamerican diversity, has been divided into two subareas: the Mayan lowlands and the Mayan highlands. The Yucatan Peninsula is part of the Mayan lowlands and holds the highest number of Lima bean landraces of Mexico, but Lima beans are in high risk of genetic erosion due to intensification of the traditional Mayan agriculture. However, information on genetic diversity of Lima beans of the Mayan highlands is lacking. By using 46 landraces collected in the Mayan area (23 from each subarea) and 73 ISSR loci (inter-simple sequence repeats), we analyzed the structure, diversity and genetic relationships of Lima beans of this part of Mesoamerica. High levels of diversity (H BAY = 0.45) and genetic structure (F ST = 0.66) were found for the whole Mayan area. Genetic diversity in the Mayan lowlands was apparently higher than the Mayan highlands (H BAY = 0.44 and 0.36, respectively); but differences were not statistically significant. Genetic structure between the subareas was high (AMOVA = 30% of total variation), most landraces grouping according to their geographic origin. This study shows the importance of the Mayan culture in the diversification and conservation of Lima beans. The results provide important information that should be considered when implementing strategies to collect Lima bean landraces and planning in situ and ex situ programs to conserve these landraces in the Mayan region.
- Published
- 2017
45. Structure and genetic diversity in wild and cultivated populations of Zapote mamey (Pouteria sapota, Sapotaceae) from southeastern Mexico: its putative domestication center
- Author
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Noemí G. Nah-Chan, Nassib H. Blancarte-Jasso, Matilde M. Ortiz-García, Jaime Martínez-Castillo, Gabriel Chepe-Cruz, and Renee S. Arias
- Subjects
0106 biological sciences ,0301 basic medicine ,Genetic diversity ,food.ingredient ,Zoology ,Forestry ,Horticulture ,Biology ,01 natural sciences ,Center of origin ,03 medical and health sciences ,030104 developmental biology ,Population bottleneck ,Pouteria sapota ,food ,Genetic marker ,Genetics ,Microsatellite ,Gene pool ,Domestication ,Molecular Biology ,010606 plant biology & botany - Abstract
Tropical fruit trees are an important component of the human diet; however, little is known about their genetic diversity levels. Zapote mamey (Pouteria sapota) is a tree native to southeastern Mexico and Central America, and Mexico is the leading producer in the world. Studies of the genetic diversity of Zapote mamey have been based on cultivated materials using morphological and biochemical characterization or dominant molecular markers. To gain a deeper understanding about the conservation status of Zapote mamey in its center of origin and domestication, we collected 188 individuals from eight wild and five cultivated populations in southeastern Mexico and characterized them using eight microsatellite loci. STRUCTURE, 3D-PCoA, and neighbor-joining analyses showed three groups in the wild gene pool and one group in the cultivated gene pool. FST values were significant between wild and cultivated gene pools, among the four groups observed and among the 13 populations collected (0.13, 0.25, and 0.36, respectively). Overall, we found low levels of genetic diversity (A = 2.77, HO = 0.29, HE = 0.39), permutation tests did not show significant differences between wild and cultivated gene pools. The Garza–Williamson index showed low values in both gene pools (wild = 0.16, cultivated = 0.11) and the Bottleneck program indicated a decrease in genetic diversity in both gene pools (wild, P = 0.027; cultivated, P = 0.054); both analyses suggest a potential genetic bottleneck within this species. This study can help to generate adequate sampling techniques and to develop effective management strategies for Zapote mamey of southeastern Mexico.
- Published
- 2019
46. Molecular and microclimatic characterization of two plantations of Vanilla planifolia (Jacks ex Andrews) with divergent backgrounds of premature fruit abortion
- Author
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Lourdes Georgina Iglesias Andreu, Verónica Borbolla Pérez, Eder Alan Escalante Manzano, Matilde Margarita Ortiz García, Jaime Martínez Castillo, and Pablo Octavio Aguilar
- Subjects
0106 biological sciences ,0301 basic medicine ,Genetic diversity ,biology ,UPGMA ,Horticulture ,biology.organism_classification ,01 natural sciences ,Loss of heterozygosity ,03 medical and health sciences ,Diversity index ,030104 developmental biology ,Vanilla planifolia ,Intergenic region ,Evolutionary biology ,Botany ,Inbreeding depression ,Microsatellite ,010606 plant biology & botany - Abstract
In order to elucidate the influence of genetic diversity and microclimatic conditions on Premature Fruit Abortion (PFA) in this study was performed the molecular and microclimatic characterization of two V. planifolia plantations with divergent backgrounds of PFA. The genetic diversity was investigated using microsatellite markers (SSR) and intergenic simple sequence repeats (ISSR) markers. The SSR markers were highly monomorphic and therefore were used only as a reference point to indicate the level of heterozygosity from codominant markers. In contrast, the level of resolution of the ISSR markers in this study was sufficient to distinguish individual differences between the plantations. Overall, the entire analysis performed in this study with ISSR markers pointed to a higher genetic diversity in the El Palmar plantation, which interestingly, does not show evidence of PFA. In this regard, the number of private loci, Shannon’s diversity index and the expected heterozygosity estimates were higher for El Palmar than for Calle Grande. These results are consistent with the information generated by the AMOVA and UPGMA analysis. In addition, the low levels of heterozygocity detected with both markers suggest the likelihood that the V. planifolia are showing a reduction in their adaptive capacity due to inbreeding depression processes. Moreover, the records of environmental conditions in recent years showed that during the periods when the PFA had worsened, the environmental temperatures reached up to 45 °C. Finally, our results of correlation analysis pointed out that a low genetic diversity and high environmental temperatures were significantly associated with PFA.
- Published
- 2016
47. Estimation of natural outcrossing rate and genetic diversity in Lima bean (Phaseolus lunatus L. var. lunatus) from Brazil using SSR markers: implications for conservation and breeding
- Author
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Regina Lucia Ferreira Gomes, João Paulo Gomes Viana, Jaime Martínez-Castillo, José Baldin Pinheiro, J. R. Assunção Filho, Angela Celis de Almeida Lopes, Ellida de Aguiar Silvestre, and J. S Penha
- Subjects
0106 biological sciences ,Genetic diversity ,biology ,Selfing ,Outcrossing ,Plant Science ,biology.organism_classification ,Mating system ,010603 evolutionary biology ,01 natural sciences ,Fixation index ,Horticulture ,Botany ,Genetics ,MELHORAMENTO GENÉTICO VEGETAL ,Genetic variability ,Phaseolus ,Agronomy and Crop Science ,Inbreeding ,Ecology, Evolution, Behavior and Systematics ,010606 plant biology & botany - Abstract
Lima bean (Phaseolus lunatus L.) is an important food source in Brazil, especially in the northeast region, where its production and consumption are high. The goals of the present study were to estimate natural outcrossing rates and genetic diversity levels of Lima bean from Brazil, using ten microsatellite loci to obtain information for their conservation and breeding. Fourteen accessions were selected from an experiment in field with open-pollinated and with the presence of pollinating insects. Twelve seeds of each of the 14 selected accessions were grown in screenhouse for tissue harvest and DNA extraction. The multilocus model was used to determine the reproductive system. The outcrossing rate was 38.1 % (tm = 0.381; ts = 0.078), and the results indicated a mixed mating system with a predominance of selfing (1 − tm = 61.9 %). The biparental inbreeding rate was high (t m − t s = 0.303) and the multilocus correlated paternity was quite high (r p(m) = 0.889), indicating that the progeny was mostly composed of full sibs. The average effective number of pollen donors per maternal plant (N ep ) was low (1.12), and the fixation index for maternal genotypes (F m ) was 0.945, indicating that most genitors resulted from inbreeding. The studied families presented considerable genetic variability: A = 6.10; %P = 30; H e = 0.60 and H o = 0.077. Total diversity was high (H T = 0.596), and a portion was distributed within families (H S = 0.058). In addition, diversity was higher between families (D ST = 0.538), and genetic differentiation was high (G ST = 0.902). The results presented here can be used in the implementation of Lima bean conservation and breeding programs in Brazil.
- Published
- 2016
48. Evaluation of molecular variability in germplasm of vanilla (Vanilla planifoliaG. Jackson in Andrews) in Southeast Mexico: implications for genetic improvement and conservation
- Author
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Lourdes Georgina Iglesias-Andreu, Mauricio Luna-Rodríguez, Alma Laura Ramos-Castellá, Jaime Martínez-Castillo, Rubén H. Andueza-Noh, Matilde M. Ortiz-García, and Pablo Octavio-Aguilar
- Subjects
0106 biological sciences ,Germplasm ,Genetic diversity ,biology ,UPGMA ,Plant Science ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Molecular analysis ,Crop ,Vanilla planifolia ,Habitat destruction ,Botany ,Threatened species ,Genetics ,Agronomy and Crop Science ,010606 plant biology & botany - Abstract
Molecular variability of vanilla (Vanilla planifolia) and three wild species was assessed to explore the possible sources of variation that can be used for crop improvement. A total of 154 ISSR loci were analysed by the UPGMA, assignment tests of individuals (STRUCTURE) and indices of genetic diversity. The assignment tests were done at two levels: first considering the four species and then only the accessions ofV. planifolia. The molecular analysis indicated 99.3% polymorphism among all species and 70.45% withinV. planifolia. The UPGMA showed the separation of these four species into three groups and groupedV. planifoliaaccessions into three subgroups. The more genetically differentiated accessions were of the Rayada morphotype and a wild accession was from Oaxaca, followed by a wild accession from Quintana Roo; all the commercial accessions ofV. planifolia(Mansa morphotype) were grouped together. The STRUCTURE analysis differentiated betweenV. planifoliaand the three wild species, and among the accessions of the Mansa and Rayada morphotypes and the wild accessions. The STRUCTURE analysis also indicated the presence of mixed individuals. These results are of great importance since the accessions ofV. planifoliathat are genetically more differentiated are the most threatened due to the scarcity of these individuals, the destruction of habitat and replacement by the commercial morphotype. These individuals should be salvaged and used to expand the genetic background of vanilla.
- Published
- 2016
49. Evaluación del riesgo de extinción de Zamia prasina en la Provincia Biótica Península de Yucatán
- Author
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Grecia Montalvo-Fernández, Jaime Alejandro Muñoz-López, Germán Carnevali, Jaime Martínez-Castillo, and Andrew P. Vovides
- Subjects
0106 biological sciences ,010607 zoology ,010603 evolutionary biology ,01 natural sciences ,Ecology, Evolution, Behavior and Systematics - Abstract
Zamia prasina es una cicada nativa de la Provincia Biotica Peninsula de Yucatan. Esta especie fue categorizada, segun la Norma Mexicana NOM-059 del 2010, como en proteccion especial (Pr) y segun las normas de la Union Internacional para la Conservacion de la Naturaleza (UICN) como en peligro critico (CR). Sin embargo, el hallazgo reciente de un elevado numero de localidades y su presencia en lugares perturbados, parecen contradecir el estado de conservacion reportado para esta cicada por ambos metodos de analisis. El objetivo de este estudio fue realizar una reevaluacion del riesgo de extincion de Z. prasina utilizando criterios de la UICN y del metodo de evaluacion del riesgo de extincion de las especies silvestres en Mexico (MER) para redefinir o confirmar su estatus de conservacion. De acuerdo con los criterios del MER, Z. prasina se mantiene en la categoria de proteccion especial (Pr); sin embargo, segun los resultados de los criterios de la UICN, esta debe ser incluida en una categoria de menor riesgo, como preocupacion menor (LC).
- Published
- 2020
50. Assessment Of Genetic Stability During Cryopreservation Of Vanilla (V. Planifolia) Shoot-Tips Using Issr Markers
- Author
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Pedro Isidro-Adolfo, Maria F. Netzahualcoyotl-Mata, Jaime Martínez-Castillo, María Teresa González-Arnao, and Lourdes G. Iglesias Andreu
- Subjects
Horticulture ,Genetic stability ,Shoot ,General Medicine ,Biology ,General Agricultural and Biological Sciences ,General Biochemistry, Genetics and Molecular Biology ,Cryopreservation - Published
- 2019
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