23 results on '"Jaime Hughes"'
Search Results
2. Fasting before Intra-Gastric Dosing with Antigen Improves Intestinal Humoral Responses in Syrian Hamsters
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Liam Wood, Jaime Hughes, Mark Trussell, Anne L. Bishop, and Ruth Griffin
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oral vaccines ,Clostridioides difficile ,intestinal delivery ,fasting ,secretory IgA ,Medicine - Abstract
Oral vaccines, unlike injected, induce intestinal secretory immunoglobulin A (sIgA) mimicking our natural defense against gut pathogens. We previously observed sIgA responses after administering the Clostridioides difficile colonisation factor CD0873 orally in enteric capsules to hamsters. Enteric-coated capsules are designed to resist dissolution in the stomach and disintegrate only at the higher pH of the small intestine. However, the variable responses between animals led us to speculate suboptimal transit of antigens to the small intestine. The rate of gastric emptying is a controlling factor in the passage of oral drugs for subsequent availability in the small intestine for absorption. Whilst in humans, food delays gastric emptying, in rats, capsules can empty quicker from fed stomachs than from fasted. To test in hamsters if fasting improves the delivery of antigens to the small intestine, as inferred from the immune responses generated, 24 animals were dosed intragastrically with enteric capsules containing recombinant CD0873. Twelve hamsters were fasted for 12 h prior to each dose and the other 12 fed. Significantly higher sIgA titres, with significantly greater bacterial-adherence-blocking activity, were detected in small intestinal lavages in the fasted group. We conclude that fasting in hamsters improves intestinal delivery leading to more robust responses.
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- 2024
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3. Towards Development of a Non-Toxigenic Clostridioides difficile Oral Spore Vaccine against Toxigenic C. difficile
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Jaime Hughes, Carl Aston, Michelle L. Kelly, and Ruth Griffin
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Clostridioides difficile ,oral vaccines ,mucosal ,sIgA ,Pharmacy and materia medica ,RS1-441 - Abstract
Clostridioides difficile is an opportunistic gut pathogen which causes severe colitis, leading to significant morbidity and mortality due to its toxins, TcdA and TcdB. Two intra-muscular toxoid vaccines entered Phase III trials and strongly induced toxin-neutralising antibodies systemically but failed to provide local protection in the colon from primary C. difficile infection (CDI). Alternatively, by immunising orally, the ileum (main immune inductive site) can be directly targeted to confer protection in the large intestine. The gut commensal, non-toxigenic C. difficile (NTCD) was previously tested in animal models as an oral vaccine for natural delivery of an engineered toxin chimera to the small intestine and successfully induced toxin-neutralising antibodies. We investigated whether NTCD could be further exploited to induce antibodies that block the adherence of C. difficile to epithelial cells to target the first stage of pathogenesis. In NTCD strain T7, the colonisation factor, CD0873, and a domain of TcdB were overexpressed. Following oral immunisation of hamsters with spores of recombinant strain, T7-0873 or T7-TcdB, intestinal and systemic responses were investigated. Vaccination with T7-0873 successfully induced intestinal antibodies that significantly reduced adhesion of toxigenic C. difficile to Caco-2 cells, and these responses were mirrored in sera. Additional engineering of NTCD is now warranted to further develop this vaccine.
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- 2022
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4. Mimicking Native Display of CD0873 on Liposomes Augments Its Potency as an Oral Vaccine against Clostridioides difficile
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Cansu Karyal, Panayiota Palazi, Jaime Hughes, Rhys C. Griffiths, Ruby R. Persaud, Patrick J. Tighe, Nicholas J. Mitchell, and Ruth Griffin
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oral vaccine ,Clostridioides difficile ,recombinant protein ,sIgA ,IgG ,lipidation ,Medicine - Abstract
Mucosal vaccination aims to prevent infection mainly by inducing secretory IgA (sIgA) antibody, which neutralises pathogens and enterotoxins by blocking their attachment to epithelial cells. We previously demonstrated that encapsulated protein antigen CD0873 given orally to hamsters induces neutralising antibodies locally as well as systemically, affording partial protection against Clostridioides difficile infection. The aim of this study was to determine whether displaying CD0873 on liposomes, mimicking native presentation, would drive a stronger antibody response. The recombinant form we previously tested resembles the naturally cleaved lipoprotein commencing with a cysteine but lacking lipid modification. A synthetic lipid (DHPPA-Mal) was designed for conjugation of this protein via its N-terminal cysteine to the maleimide headgroup. DHPPA-Mal was first formulated with liposomes to produce MalLipo; then, CD0873 was conjugated to headgroups protruding from the outer envelope to generate CD0873-MalLipo. The immunogenicity of CD0873-MalLipo was compared to CD0873 in hamsters. Intestinal sIgA and CD0873-specific serum IgG were induced in all vaccinated animals; however, neutralising activity was greatest for the CD0873-MalLipo group. Our data hold great promise for development of a novel oral vaccine platform driving intestinal and systemic immune responses.
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- 2021
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5. Colonisation Factor CD0873, an Attractive Oral Vaccine Candidate against Clostridioides difficile
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Cansu Karyal, Jaime Hughes, Michelle L. Kelly, Jeni C. Luckett, Philip V. Kaye, Alan Cockayne, Nigel P. Minton, and Ruth Griffin
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mucosal immunity ,sIgA ,oral vaccination ,Clostridioides difficile ,colonisation factor ,Biology (General) ,QH301-705.5 - Abstract
Clostridioides difficile is the main cause of health-care-associated infectious diarrhoea. Toxins, TcdA and TcdB, secreted by this bacterium damage colonic epithelial cells and in severe cases this culminates in pseudomembranous colitis, toxic megacolon and death. Vaccines in human trials have focused exclusively on the parenteral administration of toxin-based formulations. These vaccines promote toxin-neutralising serum antibodies but fail to confer protection from infection in the gut. An effective route to immunise against gut pathogens and stimulate a protective mucosal antibody response (secretory immunoglobulin A, IgA) at the infection site is the oral route. Additionally, oral immunisation generates systemic antibodies (IgG). Using this route, two different antigens were tested in the hamster model: The colonisation factor CD0873 and a TcdB fragment. Animals immunised with CD0873 generated a significantly higher titre of sIgA in intestinal fluid and IgG in serum compared to naive animals, which significantly inhibited the adherence of C. difficile to Caco-2 cells. Following challenge with a hypervirulent isolate, the CD0873-immunised group showed a mean increase of 80% in time to experimental endpoint compared to naïve animals. Survival and body condition correlated with bacterial clearance and reduced pathology in the cecum. Our findings advocate CD0873 as a promising oral vaccine candidate against C. difficile.
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- 2021
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6. Costs of abdominal aortic aneurysm care at a regional Veterans Affairs medical center with the implementation of an abdominal aortic aneurysm screening program
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Lee, Eugene S., Chun, Kevin C., Gupta, Ankur, Anderson, Richard C., Irwin, Zachary T., Newton, Elise A., Jaime-Hughes, Natalia, and Datta, Sandipan
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- 2022
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7. A CITATION REVIEW OF DISSEMINATION AND IMPLEMENTATION MODELS UTILIZED IN AGING RESEARCH WITHIN THE UNITED STATES
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Jennifer Sullivan, Anna Rae Montano, Heather Davila, Marlena Shin, Chelsea Hawley, Jaime Hughes, Kelly O'Malley, and Camilla Pimentel
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Health (social science) ,Life-span and Life-course Studies ,Health Professions (miscellaneous) - Abstract
The application of implementation science in aging research has been growing. To our knowledge, there has been no study detailing the Dissemination and Implementation (D&I) Models utilized in aging research. The goal of this citation review is to further understand D&I models frequency and nature of their use in aging research. We identified 111 Dissemination and Implementation (D&I) Models compiled on the dissemination-implementation.org website. We then conducted a citation analysis on them, searching Web of Science and PubMed databases. We extracted key data from identified articles up to January 28, 2022. Search terms were broad and included aging, older, elderly and geriatric. To be included, articles had to be in peer-reviewed journals, in English, and occur in the United States. We identified 297 articles meeting our eligibility criteria. The nature of the way D&I models used to advance evidence-based practice in aging research and practice varied as did the number of citations over time. Of the D&I models included in this review, only one (4E Framework) was developed within the aging research field. The top five models included: CFIR, RE-AIM 1.0, Behavior Change Wheel, Greenhalgh Diffusion of innovation in Service Organization and CBPR. Citations were distributed across many frameworks and yet only totaled less than 1% of all D&I Model citations suggesting there are many ways the field can grow in the future.
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- 2022
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8. Costs of abdominal aortic aneurysm care at a regional Veterans Affairs medical center with the implementation of an abdominal aortic aneurysm screening program
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Lee, Eugene S., primary, Chun, Kevin C., additional, Gupta, Ankur, additional, Anderson, Richard C., additional, Irwin, Zachary T., additional, Newton, Elise A., additional, Jaime-Hughes, Natalia, additional, and Datta, Sandipan, additional
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- 2021
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9. Costs of abdominal aortic aneurysm care at a regional Veterans Affairs medical center with the implementation of an abdominal aortic aneurysm screening program
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Sandipan Datta, Eugene S. Lee, Kevin C. Chun, Natalia Jaime-Hughes, Ankur Gupta, Zachary T. Irwin, Richard C. Anderson, and Elise A. Newton
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Surgical repair ,medicine.medical_specialty ,Total cost ,business.industry ,medicine.disease ,Medicare ,Abdominal aortic aneurysm ,United States ,Abdominal aortic aneurysm screening ,Aortic aneurysm ,Emergency medicine ,medicine ,Humans ,Mass Screening ,Surgery ,Cardiology and Cardiovascular Medicine ,business ,Veterans Affairs ,health care economics and organizations ,Average cost ,Mass screening ,Aged ,Aortic Aneurysm, Abdominal ,Ultrasonography ,Veterans - Abstract
Background Abdominal aortic aneurysm (AAA) screening has demonstrated to be cost-effective in reducing AAA-related morbidity and all-cause mortality. However, the downstream care costs of an implemented AAA screening in clinical practice have not been reported. The purpose of this study is to determine direct regional Department of Veterans Affairs (VA) costs in implementing and sustaining an AAA screening program over a 10-year period. Methods A cost data analysis (adjusted to 2021 U.S. dollars) of an AAA screening program was conducted from 2007 to 2016, where 19,649 veteran patients aged 65-75 with a smoking history were screened at a regional VA medical center. A decision support system tracked direct and indirect encounter costs from Medicare billing codes associated with AAA care. Costs from a patient’s initial screening, follow-up imaging, to AAA repair or at the end of the analysis period, March 31, 2021, were recorded. Costs for AAA repairs outside the VA system were also tracked. Results A total of 1,183 patients screened were identified with an AAA ≥3.0 cm without history of repair. Estimated screening costs were $2.8 million or $280,000 annually ($143/screening) in the care of 19,649 screened patients. There were 221 patients who required repair (143 repairs in VA, 78 repairs outside VA). The average cost of elective endovascular repair was $43,021 and that of open repair was $49,871. The total costs for all elective repairs were $9,692,591. Screening, implementation, maintenance, and surgical repair cost involved in the management of patients with AAA disease was $13.7 million, with $10,686 per life-year lived after repair (5.8 ± 3.5 mean life-years) and $490 per life-year lived after screening (6.9 ± 3.5 mean life-years) for all patients screened. There were 13 deaths of unknown causes and one patient with a ruptured AAA that required emergency repair at a cost of $124,392. CONCLUSIONS Despite known limitations, the implementation of an AAA ultrasound screening program is feasible, cost-effective, and a worthwhile endeavor.
- Published
- 2021
10. Colonisation factor cd0873, an attractive oral vaccine candidate against clostridioides difficile
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Ruth Griffin, Jeni Luckett, Alan Cockayne, Nigel P. Minton, Philip Kaye, Cansu Karyal, Jaime Hughes, and Michelle L. Kelly
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0301 basic medicine ,Microbiology (medical) ,Toxic megacolon ,030106 microbiology ,Hamster ,medicine.disease_cause ,Microbiology ,Clostridioides difficile ,03 medical and health sciences ,Cecum ,Antigen ,Virology ,medicine ,colonisation factor ,lcsh:QH301-705.5 ,biology ,Toxin ,business.industry ,Communication ,Pseudomembranous colitis ,medicine.disease ,Titer ,030104 developmental biology ,medicine.anatomical_structure ,lcsh:Biology (General) ,oral vaccination ,Immunology ,biology.protein ,mucosal immunity ,Antibody ,business ,sIgA - Abstract
Clostridioides difficile is the main cause of health-care-associated infectious diarrhoea. Toxins, TcdA and TcdB, secreted by this bacterium damage colonic epithelial cells and in severe cases this culminates in pseudomembranous colitis, toxic megacolon and death. Vaccines in human trials have focused exclusively on the parenteral administration of toxin-based formulations. These vaccines promote toxin-neutralising serum antibodies but fail to confer protection from infection in the gut. An effective route to immunise against gut pathogens and stimulate a protective mucosal antibody response (secretory immunoglobulin A, IgA) at the infection site is the oral route. Additionally, oral immunisation generates systemic antibodies (IgG). Using this route, two different antigens were tested in the hamster model: The colonisation factor CD0873 and a TcdB fragment. Animals immunised with CD0873 generated a significantly higher titre of sIgA in intestinal fluid and IgG in serum compared to naive animals, which significantly inhibited the adherence of C. difficile to Caco-2 cells. Following challenge with a hypervirulent isolate, the CD0873-immunised group showed a mean increase of 80% in time to experimental endpoint compared to naïve animals. Survival and body condition correlated with bacterial clearance and reduced pathology in the cecum. Our findings advocate CD0873 as a promising oral vaccine candidate against C. difficile.
- Published
- 2021
11. Applying Principles of Implementation Science to Aging Programs and Policies
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Jaime Hughes and Nancy Morrow-Howell
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Abstracts ,Health (social science) ,Session 1190 (Symposium) ,Life-span and Life-course Studies ,AcademicSubjects/SOC02600 ,Health Professions (miscellaneous) - Abstract
Implementation science, defined by NIH as “the scientific study of the use of strategies to adopt and integrate evidence-based health interventions,” continues to grow within research, education, and practice-based settings. Building on principles from organizational psychology, intervention science, health economics, and health services research, implementation science aims to explore how, and under what conditions, evidence-based interventions are successfully implemented and sustained in real-world settings. Applying implementation science to aging programs and settings may help to accelerate the translation of effective programs and policies into practice. This interdisciplinary symposium will provide an introduction to key principles and applications of implementation science. The first three presentations will focus on largescale spread of interventions while the last two presentations will focus on broader applications of implementation science. The first two presentations will focus on adapting interventions from delivery in one setting or population to another. The third presentation will discuss the role of implementation strategies in scaling an intervention from a controlled research setting into a large integrated healthcare system. The third presentation will focus on the intersection of implementation science and policy. The final presentation will discuss the role of implementation science in alleviating health disparities and advancing health equity. Each presentation will utilize examples from ongoing research studies to demonstrate principles. The session will close with an interactive discussion on the role of implementation science within aging, including challenges and considerations for aging programs, policies, and populations as well as opportunities for further training and education.
- Published
- 2021
12. TMOD-11. CHARACTERISATION OF THE POST-SURGICAL INVASIVE TUMOUR NICHE USING ASTROCYTE-GLIOBLASTOMA ORGANOIDS AND DECELLULARISED HUMAN BRAIN
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Omar Ahmad, David J. Scurr, Christopher Gell, Tim Constantin-Teodosiu, Chris Denning, Jonathan Rowlinson, Nicola Croxall, Stuart Smith, Ruman Rahman, Jaime Hughes, David Onion, Alexander Kondrashov, Mohammed Diksin, and Wei Cui
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Cancer Research ,Post surgical ,Pathology ,medicine.medical_specialty ,Glial fibrillary acidic protein ,biology ,Human brain ,medicine.disease ,Neural stem cell ,medicine.anatomical_structure ,Oncology ,Tumor Models ,Glioma ,Organoid ,medicine ,biology.protein ,Neurology (clinical) ,Glioblastoma ,Astrocyte - Abstract
Glioblastoma therapeutic challenges are in considerable part due to myriad survival mechanisms which allow malignant cells to repurpose signalling pathways within discreet microenvironments. These Darwinian adaptations facilitate invasion into brain parenchyma and perivascular space. We hypothesised that pre-clinical modelling of glioma invasion by recapitulating early events occurring immediately after surgery at the glioblastoma invasive margin, could reveal the cross-talk between malignant cells and surrounding healthy astrocytes. We first generated transgenic H1-derived neural stem cells using CRISPR/Cas9-mediated knock-in of the YFP reporter gene under the control of the GFAP promoter at the AAVS1 safe harbour locus. Reproducible ultrahigh-throughput AggreWells™ (7200 mini-wells per plate) were used to create astrocyte-glioblastoma organoids, which we term ‘Gliomasphere Matrices’. YFP-labelled astrocytes were co-cultured with 10 treatment-naïve patient-derived cell lines isolated from the 5-aminolevulinic (5ALA)-determined glioblastoma invasive margin. Co-cultures were seeded upon a sequentially constructed, time-of-flight secondary ion mass spectrometry (ToF-SIMS)-characterised decellularised human brain extract. YFP-astrocytes were purified from each of the 10 Gliomasphere Matrices using fluorescence-activated cell sorting (FACS) after 6- and 10-days co-culture. RNA-sequencing of the putatively reprogrammed YFP-astrocytes showed the characteristic expression of canonical key regulators of multiple malignant diseases including high-grade glioma such as SND1 and EFNB2 in addition to the identification of a single novel marker located at chromosome 1 (C1orf61), highly expressed in malignant glioma when compared to somatic cancers according to TCGA RNA-sequencing data. Differentiated YFP-astrocytes also overexpressed IFITM2 and IFITM10, known to be involved in priming resistance against pathogenic microorganisms. This ultimately suggests a fluctuating state between malignant transformation imposed by the highly infiltrative glioma cells and the counter-action of the normal astrocytes to these deleterious invasive cells. This multi-faceted model offers a unique opportunity to recapitulate early molecular cross-talk which facilitates glioblastoma recurrence and may be utilised for high-throughput drug screening.
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- 2019
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13. Genome-wide methylation analysis identifies genes silenced in non-seminoma cell lines
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Benjamin Squibb, Janet Shipley, Dzul Azri Mohamed Noor, Martin Cusack, Tom Reader, Safiah Alhazmi, Paul J. Scotting, Claire Wallace, Denise Sheer, Jennie N. Jeyapalan, Christopher Tan, Jaime Hughes, and Matthew Carr
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0301 basic medicine ,Genetics ,cancer genomics, DNA methylation, gene expression, onco genesis ,Methylation ,Biology ,Genome ,Article ,03 medical and health sciences ,030104 developmental biology ,Epigenetics of physical exercise ,DNA methylation ,Illumina Methylation Assay ,Human genome ,Molecular Biology ,Gene ,RNA-Directed DNA Methylation ,Genetics (clinical) - Abstract
Silencing of genes by DNA methylation is a common phenomenon in many types of cancer. However, the genome-wide effect of DNA methylation on gene expression has been analysed in relatively few cancers. Germ cell tumours (GCTs) are a complex group of malignancies. They are unique in developing from a pluripotent progenitor cell. Previous analyses have suggested that non-seminomas exhibit much higher levels of DNA methylation than seminomas. The genomic targets that are methylated, the extent to which this results in gene silencing and the identity of the silenced genes most likely to play a role in the tumours’ biology have not yet been established. In this study, genome-wide methylation and expression analysis of GCT cell lines was combined with gene expression data from primary tumours to address this question. Genome methylation was analysed using the Illumina infinium HumanMethylome450 bead chip system and gene expression was analysed using Affymetrix GeneChip Human Genome U133 Plus 2.0 arrays. Regulation by methylation was confirmed by demethylation using 5-aza-2-deoxycytidine and reverse transcription–quantitative PCR. Large differences in the level of methylation of the CpG islands of individual genes between tumour cell lines correlated well with differential gene expression. Treatment of non-seminoma cells with 5-aza-2-deoxycytidine verified that methylation of all genes tested played a role in their silencing in yolk sac tumour cells and many of these genes were also differentially expressed in primary tumours. Genes silenced by methylation in the various GCT cell lines were identified. Several pluripotency-associated genes were identified as a major functional group of silenced genes.
- Published
- 2016
14. Systemic in vivo delivery of siRNA to tumours using combination of polyethyleneimine and transferrin-polyethyleneimine conjugates
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Anna M, Grabowska, Ralf, Kircheis, Rajendra, Kumari, Philip, Clarke, Andrew, McKenzie, Jaime, Hughes, Cerys, Mayne, Arpan, Desai, Luana, Sasso, Susan A, Watson, and Cameron, Alexander
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Drug Carriers ,Cell Line, Tumor ,Transferrin ,Humans ,Polyethyleneimine ,Gene Silencing ,RNA, Small Interfering - Abstract
Materials for delivery of oligonucleotides need to be simple to produce yet effective in vivo to be considered for clinical applications. Formulations of biomaterials based on combinations of existing demonstrated polymeric gene carriers with targeted derivatives are potential candidates for rapid translation but have not been fully explored for siRNA applications. Here we investigated formulations based on derivatised PEI for delivery of siRNA to gastrointestinal cancer cells. siRNA was complexed with linear PEI alone or with a mixture of linear PEI and transferrin-conjugated branched PEI (TfPEI), and knockdown of reporter genes was investigated. Overall, the in vitro use of complexes containing TfPEI resulted in up to 93% knockdown at 72 h post-transfection. Sustained knockdown was also achieved in a bioluminescent xenograft model. When complexes were delivered intratumorally, a 43% reduction in luminescence was achieved in the treated group compared with the control group 48 h after treatment. For systemic administration, only the intraperitoneal route, and not the intravenous route was effective, with 49% knockdown achieved at 72 h and sustained up to 144 h (44%) after a single administration of TfPEI-complexed siRNA. No toxicity or induction of the interferon response was observed. These findings demonstrate that simple formulations of transferrin-conjugated PEI with a 'parent' polymer such as linear PEI have potential as a method for therapeutic delivery of siRNA when administered either intratumorally or systemically.
- Published
- 2015
15. Finishing the euchromatic sequence of the human genome
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Daniel Leongamornlert, Mike Kay, Richard Mott, Richard Redon, Tim @timjph Hubbard, Krishnaveni Palaniappan, Fumiaki Ito, Christina Cuomo, Maurice Pitesky, Scott Thurston, Javier Santoyo-Lopez, Laura Clarke, Jean-Louis Petit, Joseph Rodriguez, Robert Nicol, Xose Fernandez, Michael Schuster, Jaime Hughes, Jessica Wollard, Caleb Webber, Adam Siepel, Véronique De Berardinis, Ralf Sudbrak, Takehiko Itoh, Stephanie Malfatti, Panos Deloukas, Charles Steward, Gernot Glöckner, Ernest Lewis, Andy Smith, Judith Flanagan, Kim Pruitt, Sarah Lindsay, MICHAEL MCLELLAN, Angie Hinrichs, Charles Whittaker, Stuart Gammon, Rachel Elizabeth Rigby, Richard Dobson, Ian Dunham, and Stephen Keenan
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Genetics ,Whole genome sequencing ,Multidisciplinary ,Sequence analysis ,Pseudogene ,Human genome ,Computational biology ,Biology ,ENCODE ,Gene ,Genome ,Segmental duplication - Abstract
The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers approximately 99% of the euchromatic genome and is accurate to an error rate of approximately 1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human genome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead.
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- 2004
16. The Gene for Juvenile Hyaline Fibromatosis Maps to Chromosome 4q21
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Grazia M.S. Mancini, Graham R. Bignell, Melanie Dunstan, Jaime Hughes, F. Michael Pope, P. Andrew Futreal, M. Dawn Teare, Gökhan Keser, Sandra Hanks, Mary E. Campbell, Laura Arbour, Nazneen Rahman, Matthew L. Warman, Andrea Superti-Furga, Wim J. Kleijer, Sarah Edkins, Nigel Williams, Carol M. Black, Cell biology, Clinical Genetics, and Ege Üniversitesi
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Male ,Hyalin ,Infantile systemic hyalinosis ,Fibroma ,Biology ,Genetic determinism ,030207 dermatology & venereal diseases ,03 medical and health sciences ,0302 clinical medicine ,Gene mapping ,Report ,medicine ,Genetics ,Humans ,Genetics(clinical) ,10. No inequality ,Child ,Genetics (clinical) ,Hyaline ,Chromosome ,Chromosome Mapping ,medicine.disease ,Pedigree ,030220 oncology & carcinogenesis ,Child, Preschool ,Microsatellite ,Female ,Juvenile hyaline fibromatosis ,Chromosomes, Human, Pair 4 - Abstract
WOS: 000178613800026, PubMed ID: 12214284, Juvenile hyaline fibromatosis (JHF) is an autosomal recessive condition characterized by multiple subcutaneous nodular tumors, gingival fibromatosis, flexion contractures of the joints, and an accumulation of hyaline in the dermis. We performed a genomewide linkage search in two families with JHF from the same region of the Indian state of Gujarat and identified a region of homozygosity on chromosome 4q21. Dense microsatellite analyses within this interval in five families with JHF who were from diverse origins demonstrate that all are compatible with linkage to chromosome 4q21 (multipoint LOD score 5.5). Meiotic recombinants place the gene for JHF within a 7-cM interval bounded by D4S2393 and D4S395.
- Published
- 2002
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17. [Untitled]
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Rebecca Ewing, Ed Dicks, Kathy Pritchard-Jones, Georgia Chenevix-Trench, Hugh Paterson, Adrian Parker, Barry A. Gusterson, Siu Tsan Yuen, Michael R. Stratton, William Bottomley, Rachel Hawes, Hilliard F. Seigler, Gregory J. Riggins, Giuseppe Palmieri, Helen Davies, Andrew G. Nicholson, Graham R. Bignell, Catherine Mould, Darell D. Bigner, Jaime Hughes, S. Hall, Richard Wooster, Steven Hooper, Claire Stevens, Colin Cooper, Yvonne Floyd, Charles Cox, Barbara L. Weber, Jon W. Teague, S. M. Clegg, Timothy L. Darrow, Darren Hargrave, Vivian Kosmidou, Suet Yi Leung, Stephen Watt, Andrew Menzies, Hayley Woffendin, Judy W. C. Ho, Hiran Jayatilake, Janet Shipley, Sarah Edkins, Philip J. Stephens, P. Andrew Futreal, Adrienne M. Flanagan, Norman J. Maitland, Mathew J. Garnett, Antonio Cossu, Kristian Gray, and Neil Davis
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Materials science ,Structural material ,chemistry ,Mechanics of Materials ,Aluminium ,Mechanical Engineering ,Solid mechanics ,Hardening (metallurgy) ,chemistry.chemical_element ,General Materials Science ,Composite material ,Condensed Matter Physics - Published
- 2002
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18. Sox2 acts as a transcriptional repressor in neural stem cells
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Sally P. Wheatley, Jaime Hughes, Paul J. Scotting, Jamie R.M. Webster, Paul E Goodwin, Zulfiqar Ali Laghari, Yu-Ru Liu, and Carolina A Novoa
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Homeobox protein NANOG ,Transcription, Genetic ,Neurogenesis ,Cellular differentiation ,Sox2 ,Biology ,Transfection ,Cell Line ,Mice ,Cellular and Molecular Neuroscience ,SOX2 ,Chlorocebus aethiops ,Animals ,Humans ,Induced pluripotent stem cell ,Neural stem cells ,Genetics ,Induced stem cells ,SOXB1 Transcription Factors ,General Neuroscience ,fungi ,Microarray Analysis ,Embryonic stem cell ,Neural stem cell ,COS Cells ,Mutation ,Groucho ,Grg ,Repressor ,Stem cell ,Co-Repressor Proteins ,Research Article - Abstract
Background The transcription factor, Sox2, is central to the behaviour of neural stem cells. It is also one of the key embryonic stem cell factors that, when overexpressed can convert somatic cells into induced pluripotent cells. Although generally studied as a transcriptional activator, recent evidence suggests that it might also repress gene expression. Results We show that in neural stem cells Sox2 represses as many genes as it activates. We found that Sox2 interacts directly with members of the groucho family of corepressors and that repression of several target genes required this interaction. Strikingly, where many of the genes activated by Sox2 encode transcriptional regulators, no such genes were repressed. Finally, we found that a mutant form of Sox2 that was unable to bind groucho was no longer able to inhibit differentiation of neural stem cells to the same extent as the wild type protein. Conclusions These data reveal a major new mechanism of action for this key transcription factor. In the context of our understanding of endogenous stem cells, this highlights the need to determine how such a central regulator can distinguish which genes to activate and which to repress. Electronic supplementary material The online version of this article (doi:10.1186/1471-2202-15-95) contains supplementary material, which is available to authorized users.
- Published
- 2014
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19. Dietary omega-3 and -6 polyunsaturated fatty acids affect the composition and development of sheep granulosa cells, oocytes and embryos
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Wing Yee Kwong, Andrew M. Salter, Richard G. Lea, K Wonnacott, Philip C. Garnsworthy, Jaime Hughes, and Kevin D. Sinclair
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Embryology ,medicine.medical_specialty ,Linoleic acid ,Lipoproteins ,Embryonic Development ,Biology ,chemistry.chemical_compound ,Random Allocation ,Endocrinology ,High-density lipoprotein ,Fish Oils ,Dietary Fats, Unsaturated ,Ovulation Induction ,Internal medicine ,Fatty Acids, Omega-6 ,Follicular phase ,Fatty Acids, Omega-3 ,medicine ,Animals ,Plant Oils ,Sunflower Oil ,Gonadal Steroid Hormones ,Granulosa cell proliferation ,Cells, Cultured ,Sheep, Domestic ,Cell Proliferation ,chemistry.chemical_classification ,Granulosa Cells ,Fatty Acids ,Ovary ,Obstetrics and Gynecology ,Gene Expression Regulation, Developmental ,Cell Biology ,Embryo, Mammalian ,Follicular fluid ,Follicular Fluid ,Cholesterol ,Reproductive Medicine ,chemistry ,Oocytes ,lipids (amino acids, peptides, and proteins) ,Female ,Embryo quality ,Polyunsaturated fatty acid ,Lipoprotein - Abstract
The evidence that omega-3 (n-3) and -6 (n-6) polyunsaturated fatty acids (PUFAs) have differential effects on ovarian function, oocytes and embryo quality is inconsistent. We report on the effects of n-3 versus n-6 PUFA-enriched diets fed to 36 ewes over a 6-week period, prior to ovarian stimulation and follicular aspiration, on ovarian steroidogenic parameters and embryo quality. Follicle number and size were unaltered by diet, but follicular-fluid progesterone concentrations were greater in n-3 PUFA-fed ewes than in n-6 PUFA-fed ewes. The percentage of saturated FAs (mostly stearic acid) was greater in oocytes than in either granulosa cells or plasma, indicating selective uptake and/orde novosynthesis of saturated FAs at the expense of PUFAs by oocytes. High-density lipoproteins (HDLs) fractionated from sera of these ewes increased granulosa cell proliferation and steroidogenesis relative to the FA-free BSA control during culture, but there was no differential effect of n-3 and n-6 PUFAs on either oestradiol or progesterone production. HDL was ineffective in delivering FAs to embryos during culture, although n-6 PUFA HDL reduced embryo development. All blastocysts, irrespective of the treatment, contained high levels of unsaturated FAs, in particular linoleic acid. Transcripts for HDL and low-density lipoprotein (LDL) receptors (SCARB1andLDLR) and stearoyl-CoA desaturase (SCD) are reported in sheep embryos. HDL reduced the expression of transcripts forLDLRandSCDrelative to the BSA control. The data support a differential effect of n-3 and n-6 PUFAs on ovarian steroidogenesis and pre-implantation development, the latter in the absence of a net uptake of FAs.
- Published
- 2009
20. A gastrin transcript expressed in gastrointestinal cancer cells contains an internal ribosome entry site
- Author
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Martin Bushell, Anna M. Grabowska, Anne E. Willis, Jaime Hughes, C A Berry, and Susan A. Watson
- Subjects
Untranslated region ,Cancer Research ,medicine.medical_specialty ,Transcription, Genetic ,Cell Survival ,translation ,Apoptosis ,Biology ,Adenocarcinoma ,Transfection ,internal ribosome entry ,Internal medicine ,Gastrins ,gastrin ,medicine ,Humans ,Luciferase ,Hypoxia ,Luciferases ,Gastrin ,Gastrointestinal Neoplasms ,Luciferases, Renilla ,Messenger RNA ,Reverse Transcriptase Polymerase Chain Reaction ,Cancer ,Genetics and Genomics ,medicine.disease ,HCT116 Cells ,Molecular biology ,Survival Analysis ,gastrointestinal ,Genetic translation ,Gene Expression Regulation, Neoplastic ,Pancreatic Neoplasms ,Internal ribosome entry site ,Endocrinology ,Oncology ,Protein Biosynthesis ,Cancer cell ,5' Untranslated Regions ,Ribosomes - Abstract
As the hormone gastrin promotes gastrointestinal (GI) cancer progression by triggering survival pathways, regulation of gastrin expression at the translational level was explored. Sequence within the 5′ untranslated region of a gastrin transcript expressed in GI cancer cells was investigated, then cloned into a bicistronic vector upstream of firefly luciferase and transfected into a series of GI cancer cell lines. Firefly luciferase activity was measured relative to that of a cap-dependent Renilla luciferase. A gastrin transcript that was different from that described in Ensembl was expressed in GI cancer cells. Its transcription appears to be initiated within the region designated as the gene's first intron. In GI cancer cells transfected with the bicistronic construct, firefly luciferase activity increased 8–15-fold compared with the control vector, and there was a further induction of the signal (up to 25-fold) following exposure of the cells to genotoxic stress or hypoxia, suggesting that the sequence acts as an internal ribosome entry site. These data suggest that the gastrin transcript within GI cancer cells contains an internal ribosome entry site that may allow continued expression of gastrin peptides when normal translational mechanisms are inactive, such as in hypoxia, thereby promoting cancer cell survival.
- Published
- 2008
21. Mutations of the BRAF gene in human cancer
- Author
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S. M. Clegg, Richard Wooster, Timothy L. Darrow, Philip J. Stephens, Adrienne M. Flanagan, Norman J. Maitland, Andrew G. Nicholson, Antonio Cossu, Catherine Mould, Kristian Gray, Ed Dicks, Michael R. Stratton, Graham R. Bignell, Darell D. Bigner, Christopher J. Marshall, Vivian Kosmidou, Claire Stevens, Siu Tsan Yuen, William Bottomley, Rachel Hawes, Adrian Parker, Rebecca Wilson, Colin Cooper, Steven Hooper, Judy W. C. Ho, Georgia Chenevix-Trench, Rebecca Ewing, Barbara L. Weber, Hiran Jayatilake, Mathew J. Garnett, Jaime Hughes, P. Andrew Futreal, Charles Cox, Giuseppe Palmieri, Andrew Menzies, Richard Marais, Yvonne Floyd, Stephen Watt, Hugh Paterson, Barry A. Gusterson, Hilliard F. Seigler, Janet Shipley, Sarah Edkins, Helen Davies, Hayley Woffendin, Jon W. Teague, Kathy Pritchard-Jones, Darren Hargrave, Suet Yi Leung, Neil Davis, Gregory J. Riggins, and S. Hall
- Subjects
Neuroblastoma RAS viral oncogene homolog ,Proto-Oncogene Proteins B-raf ,MAP Kinase Signaling System ,DNA Mutational Analysis ,Molecular Sequence Data ,Mutation, Missense ,Raf Kinase Inhibitor ,Biology ,RC0254 ,03 medical and health sciences ,BRAF Gene Mutation ,Mice ,0302 clinical medicine ,Encorafenib ,Neoplasms ,Tumor Cells, Cultured ,Animals ,Humans ,c-Raf ,Amino Acid Sequence ,Kinase activity ,Melanoma ,030304 developmental biology ,0303 health sciences ,Multidisciplinary ,Base Sequence ,MAPK pathway ,3T3 Cells ,Protein Structure, Tertiary ,Enzyme Activation ,Proto-Oncogene Proteins c-raf ,BRAF mutation ,Cell Transformation, Neoplastic ,030220 oncology & carcinogenesis ,Cancer research ,ras Proteins ,Mitogen-Activated Protein Kinases ,RB ,V600E ,Cell Division - Abstract
Cancers arise owing to the accumulation of mutations in critical genes that alter normal programmes of cell proliferation, differ- entiation and death. As the first stage of a systematic genome- wide screen for these genes, we have prioritized for analysis signalling pathways in which at least one gene is mutated in human cancer. The RAS-RAF-MEK-ERK-MAP kinase pathway mediates cellular responses to growth signals1. RAS is mutated to an oncogenic form in about 15% of human cancer. The three RAF genes code for cytoplasmic serine/threonine kinases that are regulated by binding RAS1-3. Here we report BRAF somatic missense mutations in 66% of malignant melanomas and at lower frequency in a wide range of human cancers. All mutations are within the kinase domain, with a single substitution (V599E) accounting for 80%. Mutated BRAF proteins have elevated kinase activity and are transforming in NIH3T3 cells. Furthermore, RAS function is not required for the growth of cancer cell lines with the V599E mutation. As BRAF is a serine/threonine kinase that is commonly activated by somatic point mutation in human cancer, it may provide new therapeutic opportunities in malignant melanoma.
- Published
- 2002
- Full Text
- View/download PDF
22. The physical maps for sequencing human chromosomes 1, 6, 9, 10, 13, 20 and X
- Author
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Nigel P. Carter, Ian Dunham, A. L. Atkinson, Jaime Hughes, M. Izmajlowicz, Richard Durbin, Mark T. Ross, Soumi Joseph, Adam Butler, G. L. Harper, Louise McDonald, Rohan Taylor, W. D. Burrill, Graeme Bethel, S. R. Prathalingam, David R. Bentley, Theologia Sarafidou, Vassos Neocleous, John Sulston, F. L. Dearden, C. M. Rice, E. C. Sotheran, Carol A. Edwards, S. M. Clegg, N. Brady, T. E. Wilmer, B. L. Hopkins, G. L. Maslen, Simon G. Gregory, Owen T. McCann, Andrew J. Mungall, M.A. Leversha, Elisabeth Dawson, K. J. Phillips, R Evans, A. A. Thorpe, C M Clee, Cordelia Langford, E. J. Huckle, Helen E. Steingruber, Carol Scott, Y. H. Ramsey, John E. Collins, Gareth R. Howell, Adam Whittaker, M. E. Earthrowl, M. H. Lehvaslaiho, Pamela Whittaker, G. Laird, J. C. Brook, D. J. Scott, K. J. Ashcroft, S. H. Williams, Georgina Warry, Nicholas K. Moschonas, D. M. Pearson, K. S. Halls, C. L. Wright, R. W. Heathcott, C. Carder, Jane L. Holden, D. C. Burford, S. A. Ranby, P. J. Howard, K. Aubin, K. M. Porter, E. Holloway, R. A. Cooper, A. J. Coffey, David Beare, J. J. Catanese, C. A. Jones, J. S. Conquer, J. Ghori, E. J. Tinsley, Lisa French, Charlotte G. Cole, P. D. Dhami, K. M. Culley, Christopher J. Gillson, Sarah E. Hunt, Rhian Gwilliam, Panagiotis Deloukas, V. Cobley, Carol Soderlund, A. Taylor, G. J. Sharp, Luc J. Smink, S. Hammond, Andrew Dunham, L. J. Rogers, D. Mistry, Richard Wooster, P. J. De Jong, Jane Rogers, P. J. Hunt, L D Green, C. J. Shaw-Smith, Jennifer McDowall, C. Burrows, and Sean Humphray
- Subjects
Genetics ,Multidisciplinary ,X Chromosome ,Contig ,Gene map ,Chromosomes, Human, Pair 13 ,Chromosomes, Human, Pair 10 ,Genome, Human ,Chromosomes, Human, Pair 20 ,food and beverages ,Chromosome ,Computational biology ,Biology ,Genome ,Contig Mapping ,Gene mapping ,Chromosomes, Human, Pair 1 ,Humans ,Chromosomes, Human, Pair 6 ,X chromosome ,Genomic organization - Abstract
We constructed maps for eight chromosomes (1, 6, 9, 10, 13, 20, X and (previously) 22), representing one-third of the genome, by building landmark maps, isolating bacterial clones and assembling contigs. By this approach, we could establish the long-range organization of the maps early in the project, and all contig extension, gap closure and problem-solving was simplified by containment within local regions. The maps currently represent more than 94% of the euchromatic (gene-containing) regions of these chromosomes in 176 contigs, and contain 96% of the chromosome-specific markers in the human gene map. By measuring the remaining gaps, we can assess chromosome length and coverage in sequenced clones.
- Published
- 2001
23. Effects of omega-3 and -6 polyunsaturated fatty acids on ovine follicular cell steroidogenesis, embryo development and molecular markers of fatty acid metabolism.
- Author
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Jaime Hughes
- Subjects
PROGESTERONE ,UNSATURATED fatty acids ,FATTY acids ,LIPOPROTEINS ,ALBUMINS - Abstract
We previously reported increased follicular fluid progesterone (P4) concentrations in ewes fed an n-3 compared to an n-6 polyunsaturated fatty acid (PUFA)-enriched diet, but detected no differential effect of n-3 and n-6 PUFA-enriched high-density lipoproteins (HDL) on granulosa cell (GC) steroidogenesis in vitro. Moreover, net n-6 PUFA-enriched HDL reduced early embryo development, but in the absence of a net uptake of FA. Consequently, we hypothesised that a) effects of n-3 PUFA on ovarian steroidogenesis are mediated by theca rather than GCs and b) during embryo culture lipids are acquired solely from the albumin fraction of serum, so that albumin-delivered n-3 and n-6 PUFA exert a greater differential effect on embryo development than either low-density lipoprotein (LDL)- or HDL-delivered PUFA. Data confirmed that n-3 PUFA increases P4production solely in theca cells and that this is associated with an increase in STAR transcript expression. Furthermore, LDL- and HDL-delivered n-3 PUFA are equally efficacious in this regard during the first 96 h of culture, but thereafter only HDL-delivered n-3 PUFA induces this effect in partially luteinised theca cells. We also demonstrate that albumin is the sole serum fraction that leads to a net uptake of FA during embryo culture. PUFA-enriched serum and albumin increased the yield of morphologically poorer quality blastocysts with increased transcript expression for the antioxidant enzyme SOD1. Important differential effects of n-3 and n-6 PUFA on ovarian steroidogenesis acting solely on theca cells are identified, but differential effects of PUFA on embryo development are less apparent. [ABSTRACT FROM AUTHOR]
- Published
- 2011
- Full Text
- View/download PDF
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