60 results on '"Jaffe DA"'
Search Results
2. Measurements of PAN, alkyl nitrates, ozone, and hydrocarbons during spring in interior Alaska
- Author
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Beine, HJ, Jaffe, DA, Blake, DR, Atlas, E, and Harris, J
- Subjects
Meteorology & Atmospheric Sciences - Published
- 1996
3. Publication of the Belle II Software
- Author
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Kuhr Thomas, Bianchi Fabizio, De Pietro Giacomo, Jaffe David, Meier Frank, Sevior Martin, and Urquijo Philipp
- Subjects
Physics ,QC1-999 - Abstract
The Belle II software was developed by a few hundred individual contributors over several years. Following the rising desire of making it publicly available, the collaboration established open source software policies and procedures. The political and technical challenges and their solutions at Belle II are discussed in this article. With the publication of the Belle II software, basf2, on GitHub and Zenodo in 2021 an important milestone towards open science was reached.
- Published
- 2024
- Full Text
- View/download PDF
4. The evolution of biomass-burning aerosol size distributions due to coagulation: dependence on fire and meteorological details and parameterization
- Author
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Sakamoto, KM, Laing, JR, Stevens, RG, Jaffe, DA, and Pierce, JR
- Subjects
Physics::Atmospheric and Oceanic Physics - Abstract
Biomass-burning aerosols have a significant effect on global and regional aerosol climate forcings. To model the magnitude of these effects accurately requires knowledge of the size distribution of the emitted and evolving aerosol particles. Current biomass-burning inventories do not include size distributions, and global and regional models generally assume a fixed size distribution from all biomass-burning emissions. However, biomass-burning size distributions evolve in the plume due to coagulation and net organic aerosol (OA) evaporation or formation, and the plume processes occur on spacial scales smaller than global/regional-model grid boxes. The extent of this size-distribution evolution is dependent on a variety of factors relating to the emission source and atmospheric conditions. Therefore, accurately accounting for biomass-burning aerosol size in global models requires an effective aerosol size distribution that accounts for this sub-grid evolution and can be derived from available emission-inventory and meteorological parameters. In this paper, we perform a detailed investigation of the effects of coagulation on the aerosol size distribution in biomass-burning plumes. We compare the effect of coagulation to that of OA evaporation and formation. We develop coagulation-only parameterizations for effective biomass-burning size distributions using the SAM-TOMAS large-eddy simulation plume model. For the most-sophisticated parameterization, we use the Gaussian Emulation Machine for Sensitivity Analysis (GEM-SA) to build a parameterization of the aged size distribution based on the SAM-TOMAS output and seven inputs: emission median dry diameter, emission distribution modal width, mass emissions flux, fire area, mean boundary-layer wind speed, plume mixing depth, and time/distance since emission. This parameterization was tested against an independent set of SAM-TOMAS simulations and yields R2 values of 0.83 and 0.89 for Dpm and modal width, respectively. The size distribution is particularly sensitive to the mass emissions flux, fire area, wind speed, and time, and we provide simplified fits of the aged size distribution to just these input variables. The simplified fits were tested against 11 aged biomass-burning size distributions observed at the Mt. Bachelor Observatory in August 2015. The simple fits captured over half of the variability in observed Dpm and modal width even though the freshly emitted Dpm and modal widths were unknown. These fits may be used in global and regional aerosol models. Finally, we show that coagulation generally leads to greater changes in the particle size distribution than OA evaporation/formation does, using estimates of OA production/loss from the literature.
- Published
- 2016
5. Observations of ozone and related species in the northeast Pacific during the PHOBEA campaigns 2. Airborne observations
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Kotchenruther, RA, Kotchenruther, RA, Jaffe, DA, Beine, HJ, Anderson, TL, Bottenheim, JW, Harris, JM, Blake, DR, Schmitt, R, Kotchenruther, RA, Kotchenruther, RA, Jaffe, DA, Beine, HJ, Anderson, TL, Bottenheim, JW, Harris, JM, Blake, DR, and Schmitt, R
- Abstract
During late March and April of 1999 the University of Wyoming's King Air research aircraft measured atmospheric concentrations of NO, O3, peroxyacetyl nitrate (PAN), CO, CH4, VOCs, aerosols, and J(NO2) off the west coast of the United States. During 14 flights, measurements were made between 39°-48° N latitude, 125°-129° W longitude, and at altitudes from 0-8 km. These flights were part of the Photochemical Ozone Budget of the Eastern North Pacific Atmosphere (PHOBEA) experiment, which included both ground-based and airborne measurements. Flights were scheduled when meteorological conditions minimized the impact of local pollution sources. The resulting measurements were segregated by air mass source region as indicated by back isentropic trajectory analysis. The chemical composition of marine air masses whose 5-day back isentropic trajectories originated north of 40° N latitude or west of 180° W longitude (WNW) differed significantly from marine air masses whose 5-day back isentropic trajectories originated south of 40° N latitude and east of 180° W longitude (SW). Trajectory and chemical analyses indicated that the majority of all encountered air masses, both WNW and SW, likely originated from the northwestern Pacific and have characteristics of emissions from the East Asian continental region. However, air masses with WNW back trajectories contained higher mixing ratios of NO, NOx, O3, PAN, CO, CH4, various VOC pollution tracers, and aerosol number concentration, compared to those air masses with SW back trajectories. Calculations of air mass age using two separate methods, photochemical and back trajectory, are consistent with transport from the northwestern Pacific in 8-10 days for air masses with WNW back trajectories and 16-20 days for air masses with SW back trajectories. Correlations, trajectory analysis, and comparisons with measurements made in the northwestern Pacific during NASA's Pacific Exploritory Mission-West Phase B (PEM-West B) experiment in 1994
- Published
- 2001
6. Unexpected anthropogenic emission decreases explain recent atmospheric mercury concentration declines.
- Author
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Feinberg A, Selin NE, Braban CF, Chang KL, Custódio D, Jaffe DA, Kyllönen K, Landis MS, Leeson SR, Luke W, Molepo KM, Murovec M, Nerentorp Mastromonaco MG, Aspmo Pfaffhuber K, Rüdiger J, Sheu GR, and St Louis VL
- Abstract
Anthropogenic activities emit ~2,000 Mg y
-1 of the toxic pollutant mercury (Hg) into the atmosphere, leading to long-range transport and deposition to remote ecosystems. Global anthropogenic emission inventories report increases in Northern Hemispheric (NH) Hg emissions during the last three decades, in contradiction with the observed decline in atmospheric Hg concentrations at NH measurement stations. Many factors can obscure the link between anthropogenic emissions and atmospheric Hg concentrations, including trends in the reemissions of previously released anthropogenic ("legacy") Hg, atmospheric sink variability, and spatial heterogeneity of monitoring data. Here, we assess the observed trends in gaseous elemental mercury (Hg0 ) in the NH and apply biogeochemical box modeling and chemical transport modeling to understand the trend drivers. Using linear mixed effects modeling of observational data from 51 stations, we find negative Hg0 trends in most NH regions, with an overall trend for 2005 to 2020 of -0.011 ± 0.006 ng m-3 y-1 (±2 SD). In contrast to existing emission inventories, our modeling analysis suggests that annual NH anthropogenic emissions must have declined by at least 140 Mg between the years 2005 and 2020 to be consistent with observed trends. Faster declines in 95th percentile Hg0 values than median values in Europe, North America, and East Asian measurement stations corroborate that the likely cause is a decline in nearby anthropogenic emissions rather than background legacy reemissions. Our results are relevant for evaluating the effectiveness of the Minamata Convention on Mercury, demonstrating that existing emission inventories are incompatible with the observed Hg0 declines., Competing Interests: Competing interests statement:The authors declare no competing interest.- Published
- 2024
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7. Wildfire Impacts on O 3 in the Continental United States Using PM 2.5 and a Generalized Additive Model (2018-2023).
- Author
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Lee H and Jaffe DA
- Subjects
- United States, Environmental Monitoring, Air Pollutants analysis, Smoke, Models, Theoretical, Wildfires, Particulate Matter, Ozone analysis
- Abstract
We examined PM
2.5 and Hazard Mapping System smoke plume satellite data at ∼600 United States (US) air monitoring stations to identify surface smoke on 14.0% of all May-September days for 2018-2023, with large influences in 2020 and 2021, due to California fires, and 2023, due to Canadian fires. Days with smoke have an average of 11 μg m-3 more PM2.5 and 8 ppb higher maximum daily 8 h average (MDA8) O3 concentrations than nonsmoke days, and they also account for 94% of all days that exceed the daily PM2.5 health standard (35 μg m-3 ) and 36% of all days that exceed the O3 health standard (70 ppb). To estimate the smoke contributions to the O3 MDA8, Generalized Additive Models (GAMs) were built for each site using the nonsmoke day data and up to 8 predictors. The mean and standard deviation of the residuals from the GAMs were 0 ± 6.1 ppb for the nonsmoke day data and 4.3 ± 7.9 ppb for the smoke day data, indicating a significant enhancement in the MDA8 O3 on smoke days. We found positive residuals on 72% of the smoke days and for these days, we calculate an average smoke contribution to the O3 MDA8 of 7.8 ± 6.0 ppb. Over the 6 year period, the percentage of exceedance days due to smoke in the continental US was 25% of all exceedance days, and the highest was in 2023 (38%). In 2023, the Central US experienced an unusually high number of exceedance days, 1522, with 52% of these impacted by smoke, while the Eastern US had fewer exceedance days, 288, with 78% of these impacted by smoke. Our results demonstrate the importance of wildland fires as contributors to exceedances of the health-based national air quality standards for PM2.5 and O3 .- Published
- 2024
- Full Text
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8. PTEN inhibition promotes robust growth of bulbospinal respiratory axons and partial recovery of diaphragm function in a chronic model of cervical contusion spinal cord injury.
- Author
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Michel-Flutot P, Cheng L, Thomas SJ, Lisi B, Schwartz H, Lam S, Lyttle M, Jaffe DA, Smith G, Li S, Wright MC, and Lepore AC
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- Animals, Female, Rats, Cervical Cord injuries, Chronic Disease, Disease Models, Animal, Rats, Sprague-Dawley, Receptor-Like Protein Tyrosine Phosphatases, Class 2 antagonists & inhibitors, Receptor-Like Protein Tyrosine Phosphatases, Class 2 metabolism, Axons drug effects, Diaphragm innervation, PTEN Phosphohydrolase antagonists & inhibitors, PTEN Phosphohydrolase metabolism, Recovery of Function physiology, Recovery of Function drug effects, Spinal Cord Injuries physiopathology, Spinal Cord Injuries pathology
- Abstract
High spinal cord injury (SCI) leads to persistent and debilitating compromise in respiratory function. Cervical SCI not only causes the death of phrenic motor neurons (PhMNs) that innervate the diaphragm, but also damages descending respiratory pathways originating in the rostral ventral respiratory group (rVRG) located in the brainstem, resulting in denervation and consequent silencing of spared PhMNs located caudal to injury. It is imperative to determine whether interventions targeting rVRG axon growth and respiratory neural circuit reconnection are efficacious in chronic cervical contusion SCI, given that the vast majority of individuals are chronically-injured and most cases of SCI involve contusion-type damage to the cervical region. We therefore employed a rat model of chronic cervical hemicontusion to test therapeutic manipulations aimed at reconstructing damaged rVRG-PhMN-diaphragm circuitry to achieve recovery of respiratory function. At a chronic time point post-injury, we systemically administered: an antagonist peptide directed against phosphatase and tensin homolog (PTEN), a central inhibitor of neuron-intrinsic axon growth potential; an antagonist peptide directed against receptor-type protein tyrosine phosphatase sigma (PTPσ), another important negative regulator of axon growth capacity; or a combination of these two peptides. PTEN antagonist peptide (PAP4) promoted partial recovery of diaphragm motor activity out to nine months post-injury (though this effect depended on the anesthetic regimen used during recording), while PTPσ peptide did not impact diaphragm function after cervical SCI. Furthermore, PAP4 promoted robust growth of descending bulbospinal rVRG axons caudal to the injury within the denervated portion of the PhMN pool, while PTPσ peptide did not affect rVRG axon growth at this location that is critical to control of diaphragmatic respiratory function. In conclusion, we find that, when PTEN inhibition is targeted at a chronic time point following cervical contusion, our non-invasive PAP4 strategy can successfully promote significant regrowth of damaged respiratory neural circuitry and also partial recovery of diaphragm motor function., Competing Interests: Declaration of competing interest The authors report no declarations of interest., (Copyright © 2024 Elsevier Inc. All rights reserved.)
- Published
- 2024
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9. Transpacific Transport of Asian Peroxyacetyl Nitrate (PAN) Observed from Satellite: Implications for Ozone.
- Author
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Zhai S, Jacob DJ, Franco B, Clarisse L, Coheur P, Shah V, Bates KH, Lin H, Dang R, Sulprizio MP, Huey LG, Moore FL, Jaffe DA, and Liao H
- Subjects
- Atmosphere chemistry, Air Pollutants, Environmental Monitoring, Ozone chemistry
- Abstract
Peroxyacetyl nitrate (PAN) is produced in the atmosphere by photochemical oxidation of non-methane volatile organic compounds in the presence of nitrogen oxides (NO
x ), and it can be transported over long distances at cold temperatures before decomposing thermally to release NOx in the remote troposphere. It is both a tracer and a precursor for transpacific ozone pollution transported from East Asia to North America. Here, we directly demonstrate this transport with PAN satellite observations from the infrared atmospheric sounding interferometer (IASI). We reprocess the IASI PAN retrievals by replacing the constant prior vertical profile with vertical shape factors from the GEOS-Chem model that capture the contrasting shapes observed from aircraft over South Korea (KORUS-AQ) and the North Pacific (ATom). The reprocessed IASI PAN observations show maximum transpacific transport of East Asian pollution in spring, with events over the Northeast Pacific offshore from the Western US associated in GEOS-Chem with elevated ozone in the lower free troposphere. However, these events increase surface ozone in the US by less than 1 ppbv because the East Asian pollution mainly remains offshore as it circulates the Pacific High.- Published
- 2024
- Full Text
- View/download PDF
10. Key results from the salt lake regional smoke, ozone, and aerosol study (SAMOZA).
- Author
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Jaffe DA, Ninneman M, Nguyen L, Lee H, Hu L, Ketcherside D, Jin L, Cope E, Lyman S, Jones C, O'Neil T, and Mansfield ML
- Subjects
- Smoke analysis, Lakes analysis, Environmental Monitoring methods, Aerosols analysis, China, Ozone analysis, Air Pollutants analysis, Volatile Organic Compounds analysis
- Abstract
The Northern Wasatch Front area is one of ~ 50 metropolitan regions in the U.S. that do not meet the 2015 O
3 standard. To better understand the causes of high O3 days in this region we conducted the Salt Lake regional Smoke, Ozone and Aerosol Study (SAMOZA) in the summer of 2022. The primary goals of SAMOZA were: Measure a suite of VOCs, by Proton Transfer Reaction Mass Spectrometry (PTR-MS) and the 2,4-dinitrophenylhydrazine (DNPH) cartridge method.Evaluate whether the standard UV O3 measurements made in SLC show a positive bias during smoke events, as has been suggested in some recent studies.Use the observations to conduct photochemical modeling and statistical/machine learning analyses to understand photochemistry on both smoke-influenced and non-smoke days. Implications: The Northern Wasatch Front area is one of ~50 metropolitan regions in the U.S. that do not meet the 2015 O3 standard. To better understand the causes of high O3 days in this region we conducted the Salt Lake regional Smoke, Ozone and Aerosol Study (SAMOZA) in the summer of 2022. A number of policy relevant findings are identified in the manuscript including role of smoke and NOx vs VOC sensitivity.- Published
- 2024
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11. Impact of wildfire smoke on ozone concentrations using a Generalized Additive model in Salt Lake City, Utah, USA, 2006-2022.
- Author
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Lee H and Jaffe DA
- Subjects
- Smoke, Utah, Particulate Matter analysis, Ozone analysis, Wildfires, Air Pollutants analysis, Air Pollution analysis
- Abstract
We investigated the impact of wildfires on maximum daily 8-hr average ozone concentrations (MDA8 O
3 ) at four sites in Salt Lake City (SLC), Utah for May to September for 2006-2022. Smoke days, which were identified by a combination of overhead satellite smoke detection and surface PM2.5 data and accounted for approximately 9% of the total number of days, exhibited O3 levels 6.8 to 8.9 ppb higher than no-smoke days and were predominantly characterized by high daily maximum temperatures and low relative humidity. A Generalized Additive Model (GAM) was developed to quantify the impact of wildfire contributions to O3 . The GAM, which provides smooth functions that make the interpretation of relationships more intuitive, employed 17 predictors and demonstrated reliable performance in various evaluation metrics. The mean of the residuals for all sites was approximately zero for the training and cross-validation data and 5.1 ppb for smoke days. We developed three approaches to estimate the contribution of smoke to O3 from the model residuals. These generate a minimum and maximum contribution for each smoke day. The average of the minimum and maximum wildfire contributions to O3 for the SLC sites was 5.1 and 8.5 ppb, respectively. Between 2006 and 2022, an increasing trend in the wildfire contributions to O3 was observed in SLC. Moreover, trends of the fourth-highest MDA8 O3 before and after removing the wildfire contributions to O3 at the SLC Hawthorne site in 2006-2022 were quite different. Whereas the unadjusted data do not meet the current O3 standard, after removing the contributions from wildfires the SLC region is close to achieving levels that are consistent with meeting the O3 standard. We also found that the wildfire contribution during smoke days was particularly high under conditions of high temperature, high PM2.5 concentration, and low cloud fraction. Implications : In this study, we quantified the impact of wildfires on maximum daily 8-hr average ozone concentrations (MDA8 O3 ) in Salt Lake City, Utah, using a Generalized Additive Model (GAM). The GAM results demonstrate the importance of wildfires as contributors to O3 air pollution. Our results suggest that states could use the GAM approach to assist in quantifying the wildfire contribution to MDA8 O3 under the U.S. EPA exceptional events rule. These findings also highlight the need for strategies to manage wildfires and their subsequent impacts on air quality in an era of climate warming.- Published
- 2024
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12. Omega-3 Index improves after increased intake of foods with omega-3 polyunsaturated fatty acids among US service academy cadets.
- Author
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Rittenhouse MA, Barringer ND, Jaffe DA, Morogiello JM, Kegel JL, McNally BA, and Deuster PA
- Subjects
- Animals, Humans, Docosahexaenoic Acids, Dietary Supplements, Surveys and Questionnaires, Eicosapentaenoic Acid, Fatty Acids, Omega-3
- Abstract
The inclusion of omega-3 fatty acids in our dietary intake is important for performance and recovery and may reduce the risk of various health issues. Studies have shown the omega-3 fatty acid status of US service members is low. The purpose of this study was to evaluate whether offering fish and omega-3-enhanced foods would increase the Omega-3 Index (O3I). We hypothesize cadets will increase O3I with enhanced omega-3 options more than fish alone. Food service venues at 3 US service academies offered fish and other omega-3 foods to cadets for 12 weeks. Questionnaires were used to collect information on the dietary habits and omega-3 food intake of participants. The O3I of each participant was measured at baseline, mid- (6 weeks), and after data collection (12 weeks) time points. Following the 12 weeks, we found a significant increase in O3I. More specifically, the intake of other omega-3 foods, smoothies (3 per week) and toppings (3 per week), increased O3I in cadets. This study identified a strategy encouraging omega-3 food intake and improving O3I among cadets. These results help us understand how we can more effectively impact military service member nutrition for optimal health and performance., (Published by Elsevier Inc.)
- Published
- 2023
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13. Genomic Characterization of Three Novel Bartonella Strains in a Rodent and Two Bat Species from Mexico.
- Author
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Gonçalves-Oliveira J, Gutierrez R, Schlesener CL, Jaffe DA, Aguilar-Setién A, Boulouis HJ, Nachum-Biala Y, Huang BC, Weimer BC, Chomel BB, and Harrus S
- Abstract
Rodents and bats are the most diverse mammal group that host Bartonella species. In the Americas, they were described as harboring Bartonella species; however, they were mostly characterized to the genotypic level. We describe here Bartonella isolates obtained from blood samples of one rodent ( Peromyscus yucatanicus from San José Pibtuch, Yucatan) and two bat species ( Desmodus rotundus from Progreso, and Pteronotus parnellii from Chamela-Cuitzmala) from Mexico. We sequenced and described the genomic features of three Bartonella strains and performed phylogenomic and pangenome analyses to decipher their phylogenetic relationships. The mouse-associated genome was closely related to Bartonella vinsonii . The two bat-associated genomes clustered into a single distinct clade in between lineages 3 and 4, suggesting to be an ancestor of the rodent-associated Bartonella clade (lineage 4). These three genomes showed <95% OrthoANI values compared to any other Bartonella genome, and therefore should be considered as novel species. In addition, our analyses suggest that the B. vinsonii complex should be revised, and all B. vinsonii subspecies need to be renamed and considered as full species. The phylogenomic clustering of the bat-associated Bartonella strains and their virulence factor profile (lack of the Vbh/TraG conjugation system remains of the T4SS) suggest that it should be considered as a new lineage clade (L5) within the Bartonella genus.
- Published
- 2023
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14. NO x and O 3 Trends at U.S. Non-Attainment Areas for 1995-2020: Influence of COVID-19 Reductions and Wildland Fires on Policy-Relevant Concentrations.
- Author
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Jaffe DA, Ninneman M, and Chan HC
- Abstract
We analyzed NO
2 and O3 data from 32 U.S. non-attainment areas (NAAs) for 1995-2020. Since 1995, all regions have shown steady reductions in NO2 and the weekend-weekday pattern indicates that the O3 production regime in most NAAs has transitioned to a NOx -limited regime, while a few NAAs remain NOx -saturated. In the eastern U.S., all NAAs have made steady progress toward meeting the current (70 ppb) O3 standard, but this is less true in midwestern and western NAAs, with most showing little improvement in peak O3 concentrations since about 2010. Due to COVID-19 restrictions, NO2 concentrations were substantially reduced in 2020. In the eastern NAAs, we see significant reductions in both NO2 and peak O3 concentrations. In the midwestern U.S., results were more variable, with both higher and lower O3 values in 2020. In the western U.S. (WUS), we see variable reductions in NO2 but substantial increases in O3 at most sites, due to the influence from huge wildland fires. The recent pattern over the past decade shows that the large amount of wildland fires has a strong influence on the policy-relevant O3 metric in the WUS, and this is making it more difficult for these regions to meet the O3 standard., (© 2022. American Geophysical Union. All Rights Reserved.)- Published
- 2022
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15. Persistent Influence of Wildfire Emissions in the Western United States and Characteristics of Aged Biomass Burning Organic Aerosols under Clean Air Conditions.
- Author
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Farley R, Bernays N, Jaffe DA, Ketcherside D, Hu L, Zhou S, Collier S, and Zhang Q
- Subjects
- Aerosols analysis, Biomass, Environmental Monitoring, Particulate Matter analysis, United States, Air Pollutants analysis, Wildfires
- Abstract
Wildfire-influenced air masses under regional background conditions were characterized at the Mt. Bachelor Observatory (∼2800 m a.s.l.) in summer 2019 to provide a better understanding of the aging of biomass burning organic aerosols (BBOAs) and their impacts on the remote troposphere in the western United States. Submicron aerosol (PM
1 ) concentrations were low (average ± 1σ = 2.2 ± 1.9 μg sm-3 ), but oxidized BBOAs (average O/C = 0.84) were constantly detected throughout the study. The BBOA correlated well with black carbon, furfural, and acetonitrile and comprised above 50% of PM1 during plume events when the peak PM1 concentration reached 18.0 μg sm-3 . Wildfire plumes with estimated transport times varying from ∼10 h to >10 days were identified. The plumes showed ΔOA/ΔCO values ranging from 0.038 to 0.122 ppb ppb-1 with a significant negative relation to plume age, indicating BBOA loss relative to CO during long-range transport. Additionally, increases of average O/C and aerosol sizes were seen in more aged plumes. The mass-based size mode was approximately 700 nm ( Dva ) in the most oxidized plume that likely originated in Siberia, suggesting aqueous-phase processing during transport. This work highlights the widespread impacts that wildfire emissions have on aerosol concentration and properties, and thus climate, in the western United States.- Published
- 2022
- Full Text
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16. Response of Astrocyte Subpopulations Following Spinal Cord Injury.
- Author
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Allahyari RV, Heinsinger NM, Hwang D, Jaffe DA, Rasouli J, Shiers S, Thomas SJ, Price TJ, Rostami A, and Lepore AC
- Subjects
- Animals, Mice, Neurogenesis, Neurons metabolism, Astrocytes metabolism, Spinal Cord Injuries metabolism
- Abstract
There is growing appreciation for astrocyte heterogeneity both across and within central nervous system (CNS) regions, as well as between intact and diseased states. Recent work identified multiple astrocyte subpopulations in mature brain. Interestingly, one subpopulation (Population C) was shown to possess significantly enhanced synaptogenic properties in vitro, as compared with other astrocyte subpopulations of adult cortex and spinal cord. Following spinal cord injury (SCI), damaged neurons lose synaptic connections with neuronal partners, resulting in persistent functional loss. We determined whether SCI induces an enhanced synaptomodulatory astrocyte phenotype by shifting toward a greater proportion of Population C cells and/or increasing expression of relevant synapse formation-associated genes within one or more astrocyte subpopulations. Using flow cytometry and RNAscope in situ hybridization, we found that astrocyte subpopulation distribution in the spinal cord did not change to a selectively synaptogenic phenotype following mouse cervical hemisection-type SCI. We also found that spinal cord astrocytes expressed synapse formation-associated genes to a similar degree across subpopulations, as well as in an unchanged manner between uninjured and SCI conditions. Finally, we confirmed these astrocyte subpopulations are also present in the human spinal cord in a similar distribution as mouse, suggesting possible conservation of spinal cord astrocyte heterogeneity across species.
- Published
- 2022
- Full Text
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17. Directed Evolution of a Selective and Sensitive Serotonin Sensor via Machine Learning.
- Author
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Unger EK, Keller JP, Altermatt M, Liang R, Matsui A, Dong C, Hon OJ, Yao Z, Sun J, Banala S, Flanigan ME, Jaffe DA, Hartanto S, Carlen J, Mizuno GO, Borden PM, Shivange AV, Cameron LP, Sinning S, Underhill SM, Olson DE, Amara SG, Temple Lang D, Rudnick G, Marvin JS, Lavis LD, Lester HA, Alvarez VA, Fisher AJ, Prescher JA, Kash TL, Yarov-Yarovoy V, Gradinaru V, Looger LL, and Tian L
- Subjects
- Algorithms, Amino Acid Sequence, Amygdala physiology, Animals, Behavior, Animal, Binding Sites, Brain metabolism, HEK293 Cells, Humans, Kinetics, Linear Models, Mice, Mice, Inbred C57BL, Photons, Protein Binding, Serotonin Plasma Membrane Transport Proteins metabolism, Sleep physiology, Wakefulness physiology, Directed Molecular Evolution, Machine Learning, Serotonin metabolism
- Abstract
Serotonin plays a central role in cognition and is the target of most pharmaceuticals for psychiatric disorders. Existing drugs have limited efficacy; creation of improved versions will require better understanding of serotonergic circuitry, which has been hampered by our inability to monitor serotonin release and transport with high spatial and temporal resolution. We developed and applied a binding-pocket redesign strategy, guided by machine learning, to create a high-performance, soluble, fluorescent serotonin sensor (iSeroSnFR), enabling optical detection of millisecond-scale serotonin transients. We demonstrate that iSeroSnFR can be used to detect serotonin release in freely behaving mice during fear conditioning, social interaction, and sleep/wake transitions. We also developed a robust assay of serotonin transporter function and modulation by drugs. We expect that both machine-learning-guided binding-pocket redesign and iSeroSnFR will have broad utility for the development of other sensors and in vitro and in vivo serotonin detection, respectively., Competing Interests: Declaration of Interests L.T. and G.O.M. are co-founders of Seven Biosciences. D.E.O. is a founder of Delix., (Copyright © 2020 Elsevier Inc. All rights reserved.)
- Published
- 2020
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18. Facial grimace testing as an assay of neuropathic pain-related behavior in a mouse model of cervical spinal cord injury.
- Author
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Heinsinger NM, Spagnuolo G, Allahyari RV, Galer S, Fox T, Jaffe DA, Thomas SJ, Iacovitti L, and Lepore AC
- Subjects
- Animals, Cervical Vertebrae injuries, Female, Male, Mice, Mice, Inbred C57BL, Neuralgia etiology, Neuralgia physiopathology, Spinal Cord Injuries complications, Spinal Cord Injuries physiopathology, Facial Expression, Neuralgia psychology, Pain Measurement methods, Pain Measurement psychology, Spinal Cord Injuries psychology
- Abstract
A major portion of individuals affected by traumatic spinal cord injury (SCI) experience one or more types of chronic neuropathic pain (NP), which is often intractable to currently available treatments. The availability of reliable behavioral assays in pre-clinical models of SCI-induced NP is therefore critical to assess the efficacy of new potential therapies. Commonly used assays to evaluate NP-related behavior in rodents, such as Hargreaves thermal and von Frey mechanical testing, rely on the withdrawal response to an evoked stimulus. However, other assays that test spontaneous/non-evoked NP-related behavior or supraspinal aspects of NP would be highly useful for a more comprehensive assessment of NP following SCI. The Mouse Grimace Scale (MGS) is a tool to assess spontaneous, supraspinal pain-like behaviors in mice; however, the assay has not been characterized in a mouse model of SCI-induced chronic NP, despite the critical importance of mouse genetics as an experimental tool. We found that beginning 2 weeks after cervical contusion, SCI mice exhibited increased facial grimace features compared to laminectomy-only control mice, and this grimace phenotype persisted to the chronic time point of 5 weeks post-injury. We also found a significant relationship between facial grimace score and the evoked forepaw withdrawal response in both the Hargreaves and von Frey tests at 5 weeks post-injury when both laminectomy-only and SCI mice were included in the analysis. However, within only the SCI group, there was no correlation between grimace score and Hargreaves or von Frey responses. These results indicate both that facial grimace analysis can be used as an assay of spontaneous NP-related behavior in the mouse model of SCI and that the information provided by the MGS may be different than that provided by evoked tests of sensory function., (Copyright © 2020 Elsevier Inc. All rights reserved.)
- Published
- 2020
- Full Text
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19. Wildfire and prescribed burning impacts on air quality in the United States.
- Author
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Altshuler SL, Zhang Q, Kleinman MT, Garcia-Menendez F, Moore CTT, Hough ML, Stevenson ED, Chow JC, Jaffe DA, and Watson JG
- Subjects
- United States, Air Pollutants analysis, Air Pollution analysis, Wildfires
- Published
- 2020
- Full Text
- View/download PDF
20. Bartonella in dogs and fleas from Tulancingo, Hidalgo, Mexico.
- Author
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Tobar BZ, Lapsley WD, Swain WL, Jaffe DA, Setien AA, Galvez-Romero G, Obregon-Morales C, Olave-Leyva JI, and Chomel BB
- Subjects
- Animals, Bartonella Infections epidemiology, Bartonella Infections microbiology, Dog Diseases microbiology, Dogs, Female, Male, Mexico epidemiology, Polymerase Chain Reaction veterinary, Prevalence, Bartonella isolation & purification, Bartonella Infections veterinary, Bartonella henselae isolation & purification, Dog Diseases epidemiology, Siphonaptera microbiology
- Abstract
Bartonella sp. infection is quite common in free-roaming dogs in many tropical countries. However, limited information is available of the presence of these pathogens in Mexico. The present study looked at prevalence of Bartonella exposure and/or infection in dogs and their fleas in Central Mexico. Blood samples were collected from 31 stray dogs in August 2014 at the municipal pound, Tulancingo, Mexico, as well as fleas on 26 of them. Bartonella seropositivity was 46.9%, including 35.5% for Bartonella henselae, 45% for Bartonella clarridgeiae and 32.2% for Bartonella vinsonii subsp. berkhoffii. Three (9.7%) dogs were polymerase chain reaction (PCR) positive for the Bartonella gltA gene. Partial sequencing of that gene revealed that these three dogs were infected with B. henselae. In total, 86 fleas were collected from 26 dogs (range 1-9 fleas per dog), including 52 Ctenocephalides felis and 34 Ctenocephalides canis. Of 40 pools of fleas (20 pools of C. canis and 20 pools of C. felis), five (12.5%) were PCR positive for the Bartonella sp. gltA gene, including three C. canis pools (five fleas) and two C. felis pools (three fleas). All sequences showed 99.25% to 100% homology with B. henselae Houston I., (© 2020 The Royal Entomological Society.)
- Published
- 2020
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21. Contrasting Controls on the Diel Isotopic Variation of Hg 0 at Two High Elevation Sites in the Western United States.
- Author
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Kurz AY, Blum JD, Gratz LE, and Jaffe DA
- Subjects
- Atmosphere, Environmental Monitoring, Isotopes, Mercury Isotopes analysis, Oregon, United States, Wyoming, Mercury analysis
- Abstract
The atmosphere is a significant global reservoir for mercury (Hg) and its isotopic characterization is important to understand sources, distribution, and deposition of Hg to the Earth's surface. To better understand Hg isotope variability in the remote background atmosphere, we collected continuous 12-h Hg
0 samples for 1 week from two high elevation sites, Camp Davis, Wyoming (valley), and Mount Bachelor, Oregon (mountaintop). The samples collected at Camp Davis displayed strong diel variation in δ202 Hg values of Hg0 , but not in Δ199 Hg or Δ200 Hg values. We attribute this pattern to nightly atmospheric inversions trapping Hg in the valley and the subsequent nighttime uptake of Hg by vegetation, which depletes Hg from the atmosphere. At Mount Bachelor, the samples displayed diel variation in both δ202 Hg and Δ199 Hg, but not Δ200 Hg. We attribute this pattern to differences in the vertical distribution of Hg in the atmosphere as Mount Bachelor received free tropospheric air masses on certain nights during the sampling period. Near the end of the sampling period at Mount Bachelor, the observed diel pattern dissipated due to the influence of a nearby forest fire. The processes governing the Hg isotopic fractionation differ across sites depending on mixing, topography, and vegetation cover.- Published
- 2020
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22. Wildfire and prescribed burning impacts on air quality in the United States.
- Author
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Jaffe DA, O'Neill SM, Larkin NK, Holder AL, Peterson DL, Halofsky JE, and Rappold AG
- Subjects
- Air Movements, Air Pollution adverse effects, Air Pollution analysis, Humans, Models, Theoretical, Risk Assessment, United States, Air Pollutants adverse effects, Air Pollutants analysis, Fires, Forestry methods, Particulate Matter adverse effects, Particulate Matter analysis
- Abstract
Air quality impacts from wildfires have been dramatic in recent years, with millions of people exposed to elevated and sometimes hazardous fine particulate matter (PM
2.5 ) concentrations for extended periods. Fires emit particulate matter (PM) and gaseous compounds that can negatively impact human health and reduce visibility. While the overall trend in U.S. air quality has been improving for decades, largely due to implementation of the Clean Air Act, seasonal wildfires threaten to undo this in some regions of the United States. Our understanding of the health effects of smoke is growing with regard to respiratory and cardiovascular consequences and mortality. The costs of these health outcomes can exceed the billions already spent on wildfire suppression. In this critical review, we examine each of the processes that influence wildland fires and the effects of fires, including the natural role of wildland fire, forest management, ignitions, emissions, transport, chemistry, and human health impacts. We highlight key data gaps and examine the complexity and scope and scale of fire occurrence, estimated emissions, and resulting effects on regional air quality across the United States. The goal is to clarify which areas are well understood and which need more study. We conclude with a set of recommendations for future research., Implications: In the recent decade the area of wildfires in the United States has increased dramatically and the resulting smoke has exposed millions of people to unhealthy air quality. In this critical review we examine the key factors and impacts from fires including natural role of wildland fire, forest management, ignitions, emissions, transport, chemistry and human health.- Published
- 2020
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23. Detection of Bartonella infection in pet dogs from Manila, the Philippines.
- Author
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Singer GA, Loya FP, Lapsley WD, Tobar BZ, Carlos S, Carlos RS, Carlos ET, Adao DEV, Rivera WL, Jaffe DA, Mazet JAK, and Chomel BB
- Subjects
- Animals, Bartonella Infections epidemiology, Dogs, Female, Male, Philippines epidemiology, Prevalence, Seroepidemiologic Studies, Tick-Borne Diseases epidemiology, Tick-Borne Diseases veterinary, Bartonella Infections veterinary, Dog Diseases epidemiology, Pets microbiology
- Abstract
Dogs can be infected by a wide range of Bartonella spp., but studies regarding the prevalence of Bartonella infection in dogs in the Philippines have not been conducted. This study aimed at determining the prevalence of Bartonella infection in pets dogs from two veterinary clinics in Metro Manila, The Philippines, using both serology and polymerase chain reaction (PCR). Blood samples from 116 dogs from two different groups, one of 60 mainly "healthy dogs" and the other one of 56 dogs enrolled in a tick-borne disease suspect group, were tested for presence of B. henselae antibodies and to detect Bartonella DNA using primers specific for the citrate synthase gene. Seroprevalence for B. henselae was very low (2.6%), as the only three (5%) seropositive dogs (titer 1:64) where among the healthy pet dog group. Following subsequent sequencing, 13 samples, all from the tick-borne disease group, were determined positive for B. henselae (11.2%). This is the first study to report dog infection with B. henselae in the Philippines., Competing Interests: Declaration of Competing Interest None., (Copyright © 2020 Elsevier B.V. All rights reserved.)
- Published
- 2020
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24. Bartonella Infection in Stray Dogs from Central and Southern Chile (Linares and Puerto Montt).
- Author
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Weinborn-Astudillo RM, Pau N, Tobar BZ, Jaffe DA, Boulouis HJ, Sepúlveda P, Müller A, and Chomel BB
- Subjects
- Animals, Antibodies, Bacterial blood, Bartonella genetics, Bartonella isolation & purification, Bartonella Infections blood, Bartonella Infections epidemiology, Bartonella Infections microbiology, Chile epidemiology, Communicable Diseases, Emerging, Dog Diseases blood, Dog Diseases epidemiology, Dogs, Female, Male, Ownership, Phylogeny, Bartonella Infections veterinary, Dog Diseases microbiology
- Abstract
Bartonellae are emerging zoonotic vector-borne pathogens causing a broad spectrum of clinical symptoms in humans and animals, including life-threatening endocarditis. Dogs are infected with a wide range of Bartonella species and infection has been reported in free-roaming dogs from various South American countries. We report a high Bartonella seroprevalence in 82 Chilean stray dogs. More than half of the dogs from Linares (72.7%, n = 66) and Puerto Montt (56.2%, n = 16) were seropositive for Bartonella henselae , Bartonella vinsonii ssp. berkhoffii , or Bartonella clarridgeiae with antibody titers ranging from 1:64 to 1:512. Three dogs (3.6%) were PCR positive for Bartonella sp. Partial sequencing of the glt A gene indicated that two dogs were infected with B. henselae , and one with a strain close to Bartonella vinsonii ssp. vinsonii . Exposure to Bartonella species was common in stray Chilean dogs, as for other South American countries, likely associated with heavy ectoparasite infestation.
- Published
- 2020
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25. Prevalence of Bartonella sp. in United States military working dogs with infectious endocarditis: a retrospective case-control study.
- Author
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Davis AZ, Jaffe DA, Honadel TE, Lapsley WD, Wilber-Raymond JL, Kasten RW, and Chomel BB
- Subjects
- Animals, Bartonella classification, Bartonella genetics, Bartonella Infections epidemiology, Case-Control Studies, DNA, Bacterial, Dog Diseases microbiology, Dogs, Endocarditis microbiology, Female, Male, Myocarditis microbiology, Myocarditis veterinary, Polymerase Chain Reaction veterinary, Prevalence, Retrospective Studies, United States, Bartonella isolation & purification, Bartonella Infections veterinary, Dog Diseases epidemiology, Endocarditis veterinary
- Abstract
Objectives: Bartonella infection has been associated with endocarditis in humans, dogs, cats and cattle. In order to evaluate the importance of this pathogen as a possible source of endocarditis in United States military working dogs (MWDs), we performed a retrospective case-control study on 26 dogs with histological diagnosis of culture negative endocarditis (n = 18), endomyocarditis (n = 5) or endocardiosis (n = 3) and 28 control dogs without any histological cardiac lesions., Methods: DNA was extracted from paraffin embedded cardiac valves and tissues from case and control dogs and submitted to PCR testing with primers targeting the Bartonella gltA gene. PCR-RFLP using four restriction endonucleases and partial sequencing was then performed to determine the Bartonella species involved., Results: Nineteen (73%) cases were PCR positive for Bartonella, including B. henselae (8 dogs), B. vinsonii subsp. berkhoffii (6 dogs), B. washoensis (2 dogs) and B. elizabethae (1 dog). Only one control dog was weakly PCR positive for Bartonella. Based on the type of histological diagnosis, 13 (72.2%) dogs with endocarditis, 3 (60%) dogs with endomyocarditis and all 3 dogs with endocardiosis were Bartonella PCR positive., Conclusions: Bartonella sp. Infections were correlated with cardiopathies in US military working dogs. Systemic use of insecticides against ectoparasites and regular testing of MWDs for Bartonella infection seem highly appropriate to prevent such life-threatening exposures., Competing Interests: Conflict of Interest Statement The authors do not have any conflicts of interest to disclose., (Crown Copyright © 2019. Published by Elsevier B.V. All rights reserved.)
- Published
- 2020
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26. Relationships between Particulate Matter, Ozone, and Nitrogen Oxides during Urban Smoke Events in the Western US.
- Author
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Buysse CE, Kaulfus A, Nair U, and Jaffe DA
- Subjects
- Cities, Environmental Monitoring, Nitrogen Oxides, Particulate Matter, Smoke, Air Pollutants, Air Pollution, Ozone
- Abstract
Urban ozone (O
3 ) pollution is influenced by the transport of wildfire smoke but observed impacts are highly variable. We investigate O3 impacts from smoke in 18 western US cities during July-September, 2013-2017, with ground-based monitoring data from air quality system sites, using satellite-based hazard mapping system (HMS) fire and smoke product to identify overhead smoke. We present four key findings. First, O3 and PM2.5 (particulate matter <2.5 μm in diameter) are elevated at nearly all sites on days influenced by smoke, with the greatest mean enhancement occurring during multiday smoke events; nitrogen oxides (NOx ) are not consistently elevated across all sites. Second, PM2.5 and O3 exhibit a nonlinear relationship such that O3 increases with PM2.5 at low to moderate 24 h PM2.5 , peaks around 30-50 μg m-3 , and declines at higher PM2.5 . Third, the rate of increase of morning O3 is higher and NO/NO2 ratios are lower on smoke-influenced days, which could result from additional atmospheric oxidants in smoke. Fourth, while the HMS product is a useful tool for identifying smoke, O3 and PM2.5 are elevated on days before and after HMS-identified smoke events implying that a significant fraction of smoke events is not detected.- Published
- 2019
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27. Detection of Bartonella species, including Candidatus Bartonella ovis sp. nov, in ruminants from Mexico and lack of evidence of Bartonella DNA in saliva of common vampire bats (Desmodus rotundus) predating on them.
- Author
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Raya AP, Jaffe DA, Chomel BB, Ota MS, Tsou PM, Davis AZ, Olave-Leyva JI, Galvez-Romero G, Stuckey MJ, Kasten RW, Obregón-Morales C, Aréchiga-Ceballos N, Martinez-Martinez F, and Aguilar-Setién A
- Subjects
- Animals, Animals, Domestic microbiology, Bartonella genetics, Bartonella Infections epidemiology, Bartonella Infections transmission, Bites and Stings microbiology, Cattle Diseases epidemiology, Cattle Diseases microbiology, Cattle Diseases transmission, Chiroptera physiology, DNA, Bacterial isolation & purification, Disease Reservoirs microbiology, Genetic Variation, Mexico epidemiology, Phylogeny, Polymerase Chain Reaction, Sheep Diseases epidemiology, Sheep Diseases microbiology, Sheep Diseases transmission, Bartonella isolation & purification, Bartonella Infections veterinary, Cattle microbiology, Chiroptera microbiology, DNA, Bacterial analysis, Disease Reservoirs veterinary, Saliva microbiology, Sheep microbiology
- Abstract
Bartonella spp. have been identified in many bat species worldwide, including the zoonotic species, Candidatus Bartonella mayotimonensis. The common vampire bat (Desmodus rotundus) preys preferentially on livestock in Latin America and is frequently infected with Bartonella spp. To determine the potential role of D. rotundus in transmitting Bartonella to livestock, common vampire bats and bat-bitten domestic ruminants from Mexico were tested for Bartonella infection by blood culture or conventional PCR. Furthermore, to explore the possibility of bite transmission during blood feeding, saliva swabs from 35 D. rotundus known to be either Bartonella bacteremic (N = 17) or blood culture negative (N = 18) were tested by PCR to detect the presence of Bartonella DNA. Twenty (17.1%) of 117 sheep and 16 (34.8%) of 46 cattle were Bartonella bacteremic by PCR testing. However, none of them were infected with Bartonella strains previously isolated from vampire bats and none of the 35 D. rotundus saliva swabs tested were PCR positive for Bartonella. All but two animals among those which were Bartonella culture and/or PCR positive, were infected with either B. bovis (cattle) or B. melophagi (sheep). Two sheep were infected by a possible new species, Candidatus Bartonella ovis, being phylogenetically closer to B. bovis than B. melophagi. This study does not support the role of D. rotundus as a reservoir of Bartonella species infecting livestock, which could be transmitted via bite and blood feeding and therefore suggest limited risk of zoonotic transmission of Bartonella from common vampire bats to humans., (Copyright © 2018 Elsevier B.V. All rights reserved.)
- Published
- 2018
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28. US particulate matter air quality improves except in wildfire-prone areas.
- Author
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McClure CD and Jaffe DA
- Subjects
- United States, Air Pollutants analysis, Air Pollution, Particulate Matter analysis
- Abstract
Using data from rural monitoring sites across the contiguous United States, we evaluated fine particulate matter (PM
2.5 ) trends for 1988-2016. We calculate trends in the policy-relevant 98th quantile of PM2.5 using Quantile Regression. We use Kriging and Gaussian Geostatistical Simulations to interpolate trends between observed data points. Overall, we found positive trends in 98th quantile PM2.5 at sites within the Northwest United States (average 0.21 ± 0.12 µg·m-3 ·y-1 ; ±95% confidence interval). This was in contrast with sites throughout the rest of country, which showed a negative trend in 98th quantile PM2.5 , likely due to reductions in anthropogenic emissions (average -0.66 ± 0.10 µg·m-3 ·y-1 ). The positive trend in 98th quantile PM2.5 is due to wildfire activity and was supported by positive trends in total carbon and no trend in sulfate across the Northwest. We also evaluated daily moderate resolution imaging spectroradiometer (MODIS) aerosol optical depth (AOD) for 2002-2017 throughout the United States to compare with ground-based trends. For both Interagency Monitoring of Protected Visual Environments (IMPROVE) PM2.5 and MODIS AOD datasets, we found positive 98th quantile trends in the Northwest (1.77 ± 0.68% and 2.12 ± 0.81% per year, respectively) through 2016. The trend in Northwest AOD is even greater if data for the high-fire year of 2017 are included. These results indicate a decrease in PM2.5 over most of the country but a positive trend in the 98th quantile PM2.5 across the Northwest due to wildfires., Competing Interests: The authors declare no conflict of interest.- Published
- 2018
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29. Molecular Detection of Bartonella Species in Blood-Feeding Bat Flies from Mexico.
- Author
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Moskaluk AE, Stuckey MJ, Jaffe DA, Kasten RW, Aguilar-Setién A, Olave-Leyva JI, Galvez-Romero G, Obregón-Morales C, Salas-Rojas M, García-Flores MM, Aréchiga-Ceballos N, García-Baltazar A, and Chomel BB
- Subjects
- Animals, Bartonella genetics, Bartonella Infections epidemiology, Bartonella Infections microbiology, Chiroptera microbiology, Diptera classification, Disease Reservoirs microbiology, Genetic Variation, Humans, Mexico epidemiology, Phylogeny, Prevalence, Zoonoses, Bartonella isolation & purification, Bartonella Infections veterinary, Chiroptera parasitology, Diptera microbiology, Disease Reservoirs parasitology
- Abstract
Bartonellae are emerging blood-borne bacteria that have been recovered from a wide range of mammalian species and arthropod vectors around the world. Bats are now recognized as a potential wildlife reservoir for a diverse number of Bartonella species, including the zoonotic Candidatus B. mayotimonensis. These bat-borne Bartonella species have also been detected in the obligate ectoparasites of bats, such as blood-feeding flies, which could transmit these bacteria within bat populations. To better understand this potential for transmission, we investigated the relatedness between Bartonella detected or isolated from bat hosts sampled in Mexico and their ectoparasites. Bartonella spp. were identified in bat flies collected on two bat species, with the highest prevalence in Trichobius parasiticus and Strebla wiedemanni collected from common vampire bats (Desmodus rotundus). When comparing Bartonella sequences from a fragment of the citrate synthase gene (gltA), vector-associated strains were diverse and generally close to, but distinct from, those recovered from their bacteremic bat hosts in Mexico. Complete Bartonella sequence concordance was observed in only one bat-vector pair. The diversity of Bartonella strains in bat flies reflects the frequent host switch by bat flies, as they usually do not live permanently on their bat host. It may also suggest a possible endosymbiotic relationship with these vectors for some of the Bartonella species carried by bat flies, whereas others could have a mammalian host.
- Published
- 2018
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30. Bartonella henselae in small Indian mongooses (Herpestes auropunctatus) from Grenada, West Indies.
- Author
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Jaffe DA, Chomel BB, Kasten RW, Breitschwerdt EB, Maggi RG, McLeish A, and Zieger U
- Subjects
- Angiomatosis, Bacillary microbiology, Animals, Bartonella henselae genetics, Bartonella henselae physiology, Disease Reservoirs microbiology, Genotype, Grenada epidemiology, Zoonoses epidemiology, Zoonoses microbiology, Angiomatosis, Bacillary epidemiology, Bartonella henselae isolation & purification, Herpestidae microbiology
- Abstract
Many mammals are established hosts for the vector borne bacterial genus, Bartonella. Small Indian mongooses (Herpestes auropunctatus) have only been reported as a possible host for Bartonella henselae in southern Japan. Confirming Bartonella presence in mongooses from other regions in the world may support their role as potential reservoirs of this human pathogen. Specifically, documenting Bartonella in Caribbean mongooses would identify a potential source of zoonotic risk with mongoose-human contact in the New World. Using serological and molecular techniques, we investigated B. henselae DNA and specific antibody prevalence in 171 mongooses from all six parishes in Grenada, West Indies. Almost a third (32.3%, 54/167) of the tested mongooses were B. henselae seropositive and extracted DNA from 18/51 (35.3%) blood pellets were PCR positive for the citrate synthase (gltA) and/or the β subunit of RNA polymerase (rpoB) genes. All sequences were identical to B. henselae genotype I, as previously reported from Japan. This study confirms the role of small Indian mongooses as a natural reservoir of B. henselae in the New World., (Copyright © 2018 Elsevier B.V. All rights reserved.)
- Published
- 2018
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31. Quantifying O 3 Impacts in Urban Areas Due to Wildfires Using a Generalized Additive Model.
- Author
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Gong X, Kaulfus A, Nair U, and Jaffe DA
- Subjects
- Cities, Environmental Monitoring, Ozone, Particulate Matter, Air Pollutants, Wildfires
- Abstract
Wildfires emit O
3 precursors but there are large variations in emissions, plume heights, and photochemical processing. These factors make it challenging to model O3 production from wildfires using Eulerian models. Here we describe a statistical approach to characterize the maximum daily 8-h average O3 (MDA8) for 8 cities in the U.S. for typical, nonfire, conditions. The statistical model represents between 35% and 81% of the variance in MDA8 for each city. We then examine the residual from the model under conditions with elevated particulate matter (PM) and satellite observed smoke ("smoke days"). For these days, the residuals are elevated by an average of 3-8 ppb (MDA8) compared to nonsmoke days. We found that while smoke days are only 4.1% of all days (May-Sept) they are 19% of days with an MDA8 greater than 75 ppb. We also show that a published method that does not account for transport patterns gives rise to large overestimates in the amount of O3 from fires, particularly for coastal cities. Finally, we apply this method to a case study from August 2015, and show that the method gives results that are directly applicable to the EPA guidance on excluding data due to an uncontrollable source.- Published
- 2017
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32. Regional Influence of Aerosol Emissions from Wildfires Driven by Combustion Efficiency: Insights from the BBOP Campaign.
- Author
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Collier S, Zhou S, Onasch TB, Jaffe DA, Kleinman L, Sedlacek AJ 3rd, Briggs NL, Hee J, Fortner E, Shilling JE, Worsnop D, Yokelson RJ, Parworth C, Ge X, Xu J, Butterfield Z, Chand D, Dubey MK, Pekour MS, Springston S, and Zhang Q
- Subjects
- Biomass, Oregon, Aerosols analysis, Air Pollutants analysis, Environmental Monitoring, Fires
- Abstract
Wildfires are important contributors to atmospheric aerosols and a large source of emissions that impact regional air quality and global climate. In this study, the regional and nearfield influences of wildfire emissions on ambient aerosol concentration and chemical properties in the Pacific Northwest region of the United States were studied using real-time measurements from a fixed ground site located in Central Oregon at the Mt. Bachelor Observatory (∼2700 m a.s.l.) as well as near their sources using an aircraft. The regional characteristics of biomass burning aerosols were found to depend strongly on the modified combustion efficiency (MCE), an index of the combustion processes of a fire. Organic aerosol emissions had negative correlations with MCE, whereas the oxidation state of organic aerosol increased with MCE and plume aging. The relationships between the aerosol properties and MCE were consistent between fresh emissions (∼1 h old) and emissions sampled after atmospheric transport (6-45 h), suggesting that biomass burning organic aerosol concentration and chemical properties were strongly influenced by combustion processes at the source and conserved to a significant extent during regional transport. These results suggest that MCE can be a useful metric for describing aerosol properties of wildfire emissions and their impacts on regional air quality and global climate.
- Published
- 2016
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33. Molecular Evidence for Metabolically Active Bacteria in the Atmosphere.
- Author
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Klein AM, Bohannan BJ, Jaffe DA, Levin DA, and Green JL
- Abstract
Bacterial metabolisms are responsible for critical chemical transformations in nearly all environments, including oceans, freshwater, and soil. Despite the ubiquity of bacteria in the atmosphere, little is known about the metabolic functioning of atmospheric bacterial communities. To gain a better understanding of the metabolism of bacterial communities in the atmosphere, we used a combined empirical and model-based approach to investigate the structure and composition of potentially active bacterial communities in air sampled at a high elevation research station. We found that the composition of the putatively active bacterial community (assayed via rRNA) differed significantly from the total bacterial community (assayed via rDNA). Rare taxa in the total (rDNA) community were disproportionately active relative to abundant taxa, and members of the order Rhodospirillales had the highest potential for activity. We developed theory to explore the effects of random sampling from the rRNA and rDNA communities on observed differences between the communities. We found that random sampling, particularly in cases where active taxa are rare in the rDNA community, will give rise to observed differences in community composition including the occurrence of "phantom taxa", taxa which are detected in the rRNA community but not the rDNA community. We show that the use of comparative rRNA/rDNA techniques can reveal the structure and composition of the metabolically active portion of bacterial communities. Our observations suggest that metabolically active bacteria exist in the atmosphere and that these communities may be involved in the cycling of organic compounds in the atmosphere.
- Published
- 2016
- Full Text
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34. Global Atmospheric Transport and Source-Receptor Relationships for Arsenic.
- Author
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Wai KM, Wu S, Li X, Jaffe DA, and Perry KD
- Subjects
- Arctic Regions, Asia, Atmosphere, Humans, North America, South America, Air Pollutants analysis, Arsenic analysis, Models, Theoretical
- Abstract
Arsenic and many of its compounds are toxic pollutants in the global environment. They can be transported long distances in the atmosphere before depositing to the surface, but the global source-receptor relationships between various regions have not yet been assessed. We develop the first global model for atmospheric arsenic to better understand and quantify its intercontinental transport. Our model reproduces the observed arsenic concentrations in surface air over various sites around the world. Arsenic emissions from Asia and South America are found to be the dominant sources for atmospheric arsenic in the Northern and Southern Hemispheres, respectively. Asian emissions are found to contribute 39% and 38% of the total arsenic deposition over the Arctic and Northern America, respectively. Another 14% of the arsenic deposition to the Arctic region is attributed to European emissions. Our results indicate that the reduction of anthropogenic arsenic emissions in Asia and South America can significantly reduce arsenic pollution not only locally but also globally.
- Published
- 2016
- Full Text
- View/download PDF
35. Interannual Variability in Baseline Ozone and Its Relationship to Surface Ozone in the Western U.S.
- Author
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Baylon PM, Jaffe DA, Pierce RB, and Gustin MS
- Subjects
- Atmosphere chemistry, Time Factors, United States, Air Pollutants chemistry, Environmental Monitoring, Ozone chemistry
- Abstract
Baseline ozone refers to observed concentrations of tropospheric ozone at sites that have a negligible influence from local emissions. The Mount Bachelor Observatory (MBO) was established in 2004 to examine baseline air masses as they arrive to North America from the west. In May 2012, we observed an O3 increase of 2.0-8.5 ppbv in monthly average maximum daily 8-hour average O3 mixing ratio (MDA8 O3) at MBO and numerous other sites in the western U.S. compared to previous years. This shift in the O3 distribution had an impact on the number of exceedance days. We also observed a good correlation between daily MDA8 variations at MBO and at downwind sites. This suggests that under specific meteorological conditions, synoptic variation in O3 at MBO can be observed at other surface sites in the western U.S. At MBO, the elevated O3 concentrations in May 2012 are associated with low CO values and low water vapor values, consistent with transport from the upper troposphere/lower stratosphere (UT/LS). Furthermore, the Real-time Air Quality Modeling System (RAQMS) analyses indicate that a large flux of O3 from the UT/LS in May 2012 contributed to the observed enhanced O3 across the western U.S. Our results suggest that a network of mountaintop observations, LiDAR and satellite observations of O3 could provide key data on daily and interannual variations in baseline O3.
- Published
- 2016
- Full Text
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36. Benefits of Regulating Hazardous Air Pollutants from Coal and Oil-Fired Utilities in the United States.
- Author
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Sunderland EM, Driscoll CT Jr, Hammitt JK, Grandjean P, Evans JS, Blum JD, Chen CY, Evers DC, Jaffe DA, Mason RP, Goho S, and Jacobs W
- Subjects
- Air Pollutants, Air Pollution prevention & control, Animals, Cardiovascular Diseases etiology, Fishes, Humans, Petroleum, Public Health, United States, United States Environmental Protection Agency, Air Pollution legislation & jurisprudence, Coal, Environmental Policy legislation & jurisprudence, Mercury analysis, Power Plants legislation & jurisprudence
- Published
- 2016
- Full Text
- View/download PDF
37. Variability and sources of surface ozone at rural sites in Nevada, USA: Results from two years of the Nevada Rural Ozone Initiative.
- Author
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Fine R, Miller MB, Burley J, Jaffe DA, Pierce RB, Lin M, and Gustin MS
- Subjects
- Air Pollution statistics & numerical data, Nevada, Air Pollutants analysis, Environmental Monitoring, Ozone analysis
- Abstract
Ozone (O3) has been measured at Great Basin National Park (GBNP) since September 1993. GBNP is located in a remote, rural area of eastern Nevada. Data indicate that GBNP will not comply with a more stringent National Ambient Air Quality Standard (NAAQS) for O3, which is based upon the 3-year average of the annual 4th highest Maximum Daily 8-h Average (MDA8) concentration. Trend analyses for GBNP data collected from 1993 to 2013 indicate that MDA8 O3 increased significantly for November to February, and May. The greatest increase was for May at 0.38, 0.35, and 0.46 ppb yr(-1) for the 95th, 50th, and 5th percentiles of MDA8 O3 values, respectively. With the exception of GBNP, continuous O3 monitoring in Nevada has been limited to the greater metropolitan areas. Due to the limited spatial detail of O3 measurements in rural Nevada, a network of rural monitoring sites was established beginning in July 2011. For a period ranging from July 2011 to June 2013, maximum MDA8 O3 at 6 sites occurred in the spring and summer, and ranged from 68 to 80ppb. Our analyses indicate that GBNP, in particular, is ideally positioned to intercept air containing elevated O3 derived from regional and global sources. For the 2 year period considered here, MDA8 O3 at GBNP was an average of 3.1 to 12.6 ppb higher than at other rural Nevada sites. Measured MDA8 O3 at GBNP exceeded the current regulatory threshold of 75 ppb on 7 occasions. Analyses of synoptic conditions, model tracers, and air mass back-trajectories on these days indicate that stratospheric intrusions, interstate pollution transport, wildfires, and Asian pollution contributed to elevated O3 observed at GBNP. We suggest that regional and global sources of ozone may pose challenges to achieving a more stringent O3 NAAQS in rural Nevada., (Copyright © 2014 Elsevier B.V. All rights reserved.)
- Published
- 2015
- Full Text
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38. Mercury Emission Ratios from Coal-Fired Power Plants in the Southeastern United States during NOMADSS.
- Author
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Ambrose JL, Gratz LE, Jaffe DA, Campos T, Flocke FM, Knapp DJ, Stechman DM, Stell M, Weinheimer AJ, Cantrell CA, and Mauldin RL 3rd
- Subjects
- Air Pollutants analysis, Atmosphere chemistry, Carbon Dioxide analysis, Linear Models, Southeastern United States, Sulfur Dioxide analysis, Aerosols analysis, Coal analysis, Mercury analysis, Nitrogen analysis, Oxidants chemistry, Power Plants
- Abstract
We use measurements made onboard the National Science Foundation's C-130 research aircraft during the 2013 Nitrogen, Oxidants, Mercury, and Aerosol Distributions, Sources, and Sinks (NOMADSS) experiment to examine total Hg (THg) emission ratios (EmRs) for six coal-fired power plants (CFPPs) in the southeastern U.S. We compare observed enhancement ratios (ERs) with EmRs calculated using Hg emissions data from two inventories: the National Emissions Inventory (NEI) and the Toxics Release Inventory (TRI). For four CFPPs, our measured ERs are strongly correlated with EmRs based on the 2011 NEI (r(2) = 0.97), although the inventory data exhibit a -39% low bias. Our measurements agree best (to within ±32%) with the NEI Hg data when the latter were derived from on-site emissions measurements. Conversely, the NEI underestimates by approximately 1 order of magnitude the ERs we measured for one previously untested CFPP. Measured ERs are uncorrelated with values based on the 2013 TRI, which also tends to be biased low. Our results suggest that the Hg inventories can be improved by targeting CFPPs for which the NEI- and TRI-based EmRs have significant disagreements. We recommend that future versions of the Hg inventories should provide greater traceability and uncertainty estimates.
- Published
- 2015
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39. Evaluation of the KCl denuder method for gaseous oxidized mercury using HgBr2 at an in-service AMNet site.
- Author
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McClure CD, Jaffe DA, and Edgerton ES
- Subjects
- Air, Air Pollutants analysis, Calibration, Oxidation-Reduction, Permeability, Seasons, Bromides chemistry, Environmental Monitoring methods, Gases chemistry, Mercury analysis, Mercury Compounds chemistry, Potassium Chloride chemistry
- Abstract
During the summer of 2013, we examined the performance of KCl-coated denuders for measuring gaseous oxidized mercury (GOM) by calibrating with a known source of GOM (i.e., HgBr2) at the North Birmingham SouthEastern Aerosol Research and Characterization (SEARCH) site. We found that KCl-coated denuders have near 95% collection efficiency for HgBr2 in zero air (i.e., air scrubbed of mercury and ozone). However, in ambient air, the efficiency of KCl-coated denuders in capturing HgBr2 dropped to 20-54%. We also found that absolute humidity and ozone each demonstrate a significant inverse correlation with HgBr2 recovery in ambient air. Subsequent laboratory tests with HgBr2 and the KCl-coated denuder show that ozone and absolute humidity cause the release of gaseous elemental Hg from the denuder and thus appear to explain the low recovery in ambient air. Based on these findings, we infer that the KCl denuder method underestimates atmospheric GOM concentrations and a calibration system is needed to accurately measure GOM. The system described in this paper for HgBr2 could be implemented with existing mercury speciation instrumentation and this would improve our knowledge of the response to one potentially important GOM compound.
- Published
- 2014
- Full Text
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40. Progress on understanding atmospheric mercury hampered by uncertain measurements.
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Jaffe DA, Lyman S, Amos HM, Gustin MS, Huang J, Selin NE, Levin L, Ter Schure A, Mason RP, Talbot R, Rutter A, Finley B, Jaeglé L, Shah V, McClure C, Ambrose J, Gratz L, Lindberg S, Weiss-Penzias P, Sheu GR, Feddersen D, Horvat M, Dastoor A, Hynes AJ, Mao H, Sonke JE, Slemr F, Fisher JA, Ebinghaus R, Zhang Y, and Edwards G
- Subjects
- Calibration, Gases chemistry, Humans, Oxidation-Reduction, Particulate Matter chemistry, Air Pollutants analysis, Atmosphere chemistry, Mercury analysis, Uncertainty
- Published
- 2014
- Full Text
- View/download PDF
41. Impact of wildfires on ozone exceptional events in the Western u.s.
- Author
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Jaffe DA, Wigder N, Downey N, Pfister G, Boynard A, and Reid SB
- Subjects
- Cities, Idaho, Nevada, Utah, Air Pollutants analysis, Fires, Models, Statistical, Ozone analysis
- Abstract
Wildfires generate substantial emissions of nitrogen oxides (NOx) and volatile organic compounds (VOCs). As such, wildfires contribute to elevated ozone (O3) in the atmosphere. However, there is a large amount of variability in the emissions of O3 precursors and the amount of O3 produced between fires. There is also significant interannual variability as seen in median O3, organic carbon and satellite derived carbon monoxide mixing ratios in the western U.S. To better understand O3 produced from wildfires, we developed a statistical model that estimates the maximum daily 8 h average (MDA8) O3 as a function of several meteorological and temporal variables for three urban areas in the western U.S.: Salt Lake City, UT; Boise, ID; and Reno, NV. The model is developed using data from June-September 2000-2012. For these three locations, the statistical model can explain 60, 52, and 27% of the variability in daily MDA8. The Statistical Model Residual (SMR) can give information on additional sources of O3 that are not explained by the usual meteorological pattern. Several possible O3 sources can explain high SMR values on any given day. We examine several cases with high SMR that are due to wildfire influence. The first case considered is for Reno in June 2008 when the MDA8 reached 82 ppbv. The wildfire influence for this episode is supported by PM concentrations, the known location of wildfires at the time and simulations with the Weather and Research Forecasting Model with Chemistry (WRF-Chem) which indicates transport to Reno from large fires burning in California. The contribution to the MDA8 in Reno from the California wildfires is estimated to be 26 ppbv, based on the SMR, and 60 ppbv, based on WRF-Chem. The WRF-Chem model also indicates an important role for peroxyacetyl nitrate (PAN) in producing O3 during transport from the California wildfires. We hypothesize that enhancements in PAN due to wildfire emissions may lead to regional enhancements in O3 during high fire years. The second case is for the Salt Lake City (SLC) region for August 2012. During this period the MDA8 reached 83 ppbv and the SMR suggests a wildfire contribution of 19 ppbv to the MDA8. The wildfire influence is supported by PM2.5 data, the known location of wildfires at the time, HYSPLIT dispersion modeling that indicates transport from fires in Idaho, and results from the CMAQ model that confirm the fire impacts. Concentrations of PM2.5 and O3 are enhanced during this period, but overall there is a poor relationship between them, which is consistent with the complexities in the secondary production of O3. A third case looks at high MDA8 in Boise, ID, during July 2012 and reaches similar conclusions. These results support the use of statistical modeling as a tool to quantify the influence from wildfires on urban O3 concentrations.
- Published
- 2013
- Full Text
- View/download PDF
42. Do we understand what the mercury speciation instruments are actually measuring? Results of RAMIX.
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Gustin MS, Huang J, Miller MB, Peterson C, Jaffe DA, Ambrose J, Finley BD, Lyman SN, Call K, Talbot R, Feddersen D, Mao H, and Lindberg SE
- Subjects
- Air Pollutants chemistry, Bromides analysis, Carbon Monoxide analysis, Environmental Monitoring instrumentation, Environmental Monitoring methods, Mercury chemistry, Mercury Compounds analysis, Nevada, Ozone analysis, Air Pollutants analysis, Mercury analysis
- Abstract
From August 22 to September 16, 2012, atmospheric mercury (Hg) was measured from a common manifold in the field during the Reno Atmospheric Mercury Intercomparison eXperiment. Data were collected using Tekran systems, laser induced fluorescence, and evolving new methods. The latter included the University of Washington-Detector for Oxidized Mercury, the University of Houston Mercury instrument, and a filter-based system under development by the University of Nevada-Reno. Good transmission of total Hg was found for the manifold. However, despite application of standard protocols and rigorous quality control, systematic differences in operationally defined forms of Hg were measured by the sampling systems. Concentrations of reactive Hg (RM) measured with new methods were at times 2-to-3-fold higher than that measured by Tekran system. The low RM recovery by the latter can be attributed to lack of collection as the system is currently configured. Concentrations measured by all instruments were influenced by their sampling location in-the-manifold and the instrument analytical configuration. On the basis of collective assessment of the data, we hypothesize that reactions forming RM were occurring in the manifold. Results provide a new framework for improved understanding of the atmospheric chemistry of Hg.
- Published
- 2013
- Full Text
- View/download PDF
43. Development, testing, and deployment of an air sampling manifold for spiking elemental and oxidized mercury during the Reno Atmospheric Mercury Intercomparison Experiment (RAMIX).
- Author
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Finley BD, Jaffe DA, Call K, Lyman S, Gustin MS, Peterson C, Miller M, and Lyman T
- Subjects
- Environmental Monitoring methods, Equipment Design, Nevada, Oxidation-Reduction, Ozone analysis, Water analysis, Air Pollutants analysis, Bromides analysis, Environmental Monitoring instrumentation, Mercury analysis, Mercury Compounds analysis
- Abstract
The Reno Atmospheric Mercury Intercomparison Experiment (RAMIX) was in Reno, NV from August 22, 2011 to September 16, 2011. The goals of the experiment were to compare existing and new methods for measurements of ambient elemental and oxidized Hg, and to test these with quantitative spikes of Hg(0), HgBr2, O3 and water vapor. In this paper we describe the design, testing, and deployment of a high flow manifold system designed to deliver ambient air and spiked compounds to multiple instruments simultaneously. The manifold was constructed of 1" OD PFA tubing and heated to 115 °C for the entire active zone. Manifold flow was controlled at ∼200 LPM using a blower and a velocity sensor in a feedback control system. Permeation tubes in controlled ovens were used to deliver Hg(0) and HgBr2. Ozone was generated from a small UV lamp in a flow of high purity O2. Water vapor was generated by pumping a flow of purified N2 through heated, high purity water. The spiking delivery for Hg(0), HgBr2, O3, and water vapor after dilution in the manifold ranged up to 20 ng m(-3), 0.64 ng m(-3), 100 ppbv, and 20 g kg(-1), respectively. During laboratory tests the average transmission efficiencies for Hg(0), HgBr2, and O3 were found to be 92%, 76%, and 93%, respectively.
- Published
- 2013
- Full Text
- View/download PDF
44. Fast time resolution oxidized mercury measurements during the Reno Atmospheric Mercury Intercomparison Experiment (RAMIX).
- Author
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Ambrose JL, Lyman SN, Huang J, Gustin MS, and Jaffe DA
- Subjects
- Environmental Monitoring instrumentation, Environmental Monitoring methods, Nevada, Oxidation-Reduction, Ozone analysis, Reproducibility of Results, Water analysis, Air Pollutants analysis, Bromides analysis, Mercury analysis, Mercury Compounds analysis
- Abstract
The Reno Atmospheric Mercury Intercomparison Experiment (RAMIX) was carried out from 22 August to 16 September, 2011 in Reno, NV to evaluate the performance of new and existing methods to measure atmospheric mercury (Hg). Measurements were made using a common sampling manifold to which controlled concentrations of Hg species, including gaseous elemental mercury (GEM) and HgBr2 (a surrogate gaseous oxidized mercury (GOM) compound), and potential interferents were added. We present an analysis of Hg measurements made using the University of Washington's Detector for Oxidized Hg Species (DOHGS), focusing on tests of GEM and HgBr2 spike recovery, the potential for interference from ozone (O3) and water vapor (WV), and temporal variability of ambient reactive mercury (RM). The mean GEM and HgBr2 spike recoveries measured with the DOHGS were 95% and 66%, respectively. The DOHGS responded linearly to HgBr2. We found no evidence that elevated O3 interfered in the DOHGS RM measurements. A reduction in RM collection and retention efficiencies at very high ambient WV mixing ratios is possible. Comparisons between the DOHGS and participating Hg instruments demonstrate good agreement for GEM and large discrepancies for RM. The results suggest that existing GOM measurements are biased low.
- Published
- 2013
- Full Text
- View/download PDF
45. Intercontinental dispersal of bacteria and archaea by transpacific winds.
- Author
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Smith DJ, Timonen HJ, Jaffe DA, Griffin DW, Birmele MN, Perry KD, Ward PD, and Roberts MS
- Subjects
- Archaea classification, Archaea genetics, Bacteria classification, Bacteria genetics, Metagenome, Microarray Analysis, North America, RNA, Ribosomal, 16S genetics, Wind, Air Microbiology, Archaea isolation & purification, Bacteria isolation & purification, Biodiversity, Phylogeography
- Abstract
Microorganisms are abundant in the upper atmosphere, particularly downwind of arid regions, where winds can mobilize large amounts of topsoil and dust. However, the challenge of collecting samples from the upper atmosphere and reliance upon culture-based characterization methods have prevented a comprehensive understanding of globally dispersed airborne microbes. In spring 2011 at the Mt. Bachelor Observatory in North America (2.8 km above sea level), we captured enough microbial biomass in two transpacific air plumes to permit a microarray analysis using 16S rRNA genes. Thousands of distinct bacterial taxa spanning a wide range of phyla and surface environments were detected before, during, and after each Asian long-range transport event. Interestingly, the transpacific plumes delivered higher concentrations of taxa already in the background air (particularly Proteobacteria, Actinobacteria, and Firmicutes). While some bacterial families and a few marine archaea appeared for the first and only time during the plumes, the microbial community compositions were similar, despite the unique transport histories of the air masses. It seems plausible, when coupled with atmospheric modeling and chemical analysis, that microbial biogeography can be used to pinpoint the source of intercontinental dust plumes. Given the degree of richness measured in our study, the overall contribution of Asian aerosols to microbial species in North American air warrants additional investigation.
- Published
- 2013
- Full Text
- View/download PDF
46. Free tropospheric transport of microorganisms from Asia to North America.
- Author
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Smith DJ, Jaffe DA, Birmele MN, Griffin DW, Schuerger AC, Hee J, and Roberts MS
- Subjects
- Alternaria classification, Alternaria genetics, Alternaria isolation & purification, Asia, Bacteria classification, Bacteria genetics, Carbon Monoxide analysis, Chaetomium classification, Chaetomium genetics, Chaetomium isolation & purification, DNA, Bacterial analysis, DNA, Bacterial isolation & purification, DNA, Fungal analysis, DNA, Fungal isolation & purification, Environmental Monitoring methods, Fungi classification, Fungi genetics, Microbial Viability, North America, Ozone analysis, Plant Diseases microbiology, Polymerase Chain Reaction methods, Air Microbiology, Air Movements, Air Pollutants analysis, Atmosphere chemistry, Bacteria isolation & purification, Fungi isolation & purification
- Abstract
Microorganisms are abundant in the troposphere and can be transported vast distances on prevailing winds. This study measures the abundance and diversity of airborne bacteria and fungi sampled at the Mt. Bachelor Observatory (located 2.7 km above sea level in North America) where incoming free tropospheric air routinely arrives from distant sources across the Pacific Ocean, including Asia. Overall deoxyribonucleic acid (DNA) concentrations for microorganisms in the free troposphere, derived from quantitative polymerase chain reaction assays, averaged 4.94 × 10(-5) ng DNA m(-3) for bacteria and 4.77 × 10(-3) ng DNA m(-3) for fungi. Aerosols occasionally corresponded with microbial abundance, most often in the springtime. Viable cells were recovered from 27.4 % of bacterial and 47.6 % of fungal samples (N = 124), with 49 different species identified by ribosomal DNA gene sequencing. The number of microbial isolates rose significantly above baseline values on 22-23 April 2011 and 13-15 May 2011. Both events were analyzed in detail, revealing distinct free tropospheric chemistries (e.g., low water vapor, high aerosols, carbon monoxide, and ozone) useful for ruling out boundary layer contamination. Kinematic back trajectory modeling suggested air from these events probably originated near China or Japan. Even after traveling for 10 days across the Pacific Ocean in the free troposphere, diverse and viable microbial populations, including presumptive plant pathogens Alternaria infectoria and Chaetomium globosum, were detected in Asian air samples. Establishing a connection between the intercontinental transport of microorganisms and specific diseases in North America will require follow-up investigations on both sides of the Pacific Ocean.
- Published
- 2012
- Full Text
- View/download PDF
47. Arrival time and magnitude of airborne fission products from the Fukushima, Japan, reactor incident as measured in Seattle, WA, USA.
- Author
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Leon JD, Jaffe DA, Kaspar J, Knecht A, Miller ML, Robertson RG, and Schubert AG
- Subjects
- Cities, Humans, Japan, Risk Assessment methods, Time Factors, Washington, Air Pollutants, Radioactive analysis, Environmental Monitoring methods, Radioactive Fallout analysis, Radioactive Hazard Release, Radioisotopes analysis
- Abstract
We report results of air monitoring started due to the recent natural catastrophe on 11 March 2011 in Japan and the severe ensuing damage to the Fukushima Dai-ichi nuclear reactor complex. On 17-18 March 2011, we registered the first arrival of the airborne fission products (131)I, (132)I, (132)Te, (134)Cs, and (137)Cs in Seattle, WA, USA, by identifying their characteristic gamma rays using a germanium detector. We measured the evolution of the activities over a period of 23 days at the end of which the activities had mostly fallen below our detection limit. The highest detected activity from radionuclides attached to particulate matter amounted to 4.4 ± 1.3 mBq m(-3) of (131)I on 19-20 March., (Copyright © 2011 Elsevier Ltd. All rights reserved.)
- Published
- 2011
- Full Text
- View/download PDF
48. Variability in pesticide deposition and source contributions to snowpack in Western U.S. national parks.
- Author
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Hageman KJ, Hafner WD, Campbell DH, Jaffe DA, Landers DH, and Simonich SL
- Subjects
- Motion, Regression Analysis, United States, Ecosystem, Pesticides analysis, Snow chemistry
- Abstract
Fifty-six seasonal snowpack samples were collected at remote alpine, subarctic, and arctic sites in eight Western U.S. national parks during three consecutive years (2003-2005). Four current-use pesticides (CUPs) (dacthal (DCPA), chlorpyrifos, endosulfans, and gamma-hexachlorocyclohexane (HCH)) and four historic-use pesticides (HUPs) (dieldrin, alpha-HCH, chlordanes, and hexachlorobenzene (HCB)) were commonly measured at all sites, during all years. The mean coefficient of variation for pesticide concentrations was 15% for site replicate samples, 41% for intrapark replicate samples, and 59% for interannual replicate samples. The relative pesticide concentration profiles were consistent from year to year but unique for individual parks, indicating a regional source effect. HUP concentrations were well-correlated with regional cropland intensity when the effect of temperature on snow-air partitioning was considered. The mass of individual CUPs used in regions located one-day upwind of the parks was calculated using air mass back trajectories, and this was used to explain the distribution of CUPs among the parks. The percent of the snowpack pesticide concentration due to regional transport was high (>75%) for the majority of pesticides in all parks. These results suggest that the majority of pesticide contamination in U.S. national parks is due to regional pesticide use in North America.
- Published
- 2010
- Full Text
- View/download PDF
49. Development and first results of an aircraft-based, high time resolution technique for gaseous elemental and reactive (oxidized) gaseous mercury.
- Author
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Swartzendruber PC, Jaffe DA, and Finley B
- Subjects
- Air Pollutants chemistry, Air Pollution analysis, Aircraft, Gases chemistry, Mercury chemistry
- Abstract
We developed a high time resolution (2.5 min) aircraft instrument for gaseous elemental mercury (GEM) and reactive gaseous mercury (RGM). The system measures RGM with complementary denuder and difference techniques, which can be compared to check for consistency. In laboratory tests, the agreement of the two techniques was 15% (+/- 13%). In five test flights, RGM was generally below the detection limit of the difference technique (0.08-0.16 ng/m3) except for values of 200-500 pg/m3 in airmasses between 600-700 mb (Flight 1) and 850-550 mb (Right 4), which is consistent with previous observations of RGM at Mt Bachelor. There was a linear correlation between the denuder and difference techniques in each flight (range of slopes, 0.27-1.24) and across all flights (slope = 0.37, p < 1e-6). The correlation is evidence that the difference technique is able to measure RGM in real time, although RGM appears to not be fully captured or recovered by the denuder. The only factor common to all RGM enhancements was the low aerosol scattering coefficient (< 2 M/m). Particulate mercury was below the detection limit (27 pg/m3) for all samples. The mean GEM and total mercury (THg) profiles are in the middle of the range of other published profiles. The THg profile showed no gradient to 5.5 km (p = 0.12, r2 = 0.009).
- Published
- 2009
- Full Text
- View/download PDF
50. Intercontinental impacts of ozone pollution on human mortality.
- Author
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Anenberg SC, West IJ, Fiore AM, Jaffe DA, Prather MJ, Bergmann D, Cuvelier K, Dentener FJ, Duncan BN, Gauss M, Hess P, Jonson JE, Lupu A, Mackenzie IA, Marmer E, Park RJ, Sanderson MG, Schultz M, Shindell DT, Szopa S, Vivanco MG, Wild O, and Zeng G
- Subjects
- Air Pollutants analysis, Asia epidemiology, Computer Simulation, Europe epidemiology, Heart Diseases mortality, Humans, Lung Diseases mortality, Models, Theoretical, North America epidemiology, Ozone analysis, Population Density, Seasons, Air Pollutants toxicity, Environmental Exposure analysis, Environmental Exposure statistics & numerical data, Mortality trends, Ozone toxicity
- Abstract
Ozone exposure is associated with negative health impacts, including premature mortality. Observations and modeling studies demonstrate that emissions from one continent influence ozone air quality over other continents. We estimate the premature mortalities avoided from surface ozone decreases obtained via combined 20% reductions of anthropogenic nitrogen oxide, nonmethane volatile organic compound, and carbon monoxide emissions in North America (NA), EastAsia (EA), South Asia (SA), and Europe (EU). We use estimates of ozone responses to these emission changes from several atmospheric chemical transportmodels combined with a health impactfunction. Foreign emission reductions contribute approximately 30%, 30%, 20%, and >50% of the mortalities avoided by reducing precursor emissions in all regions together in NA, EA, SA and EU, respectively. Reducing emissions in NA and EU avoids more mortalities outside the source region than within, owing in part to larger populations in foreign regions. Lowering the global methane abundance by 20% reduces mortality mostin SA,followed by EU, EA, and NA. For some source-receptor pairs, there is greater uncertainty in our estimated avoided mortalities associated with the modeled ozone responses to emission changes than with the health impact function parameters.
- Published
- 2009
- Full Text
- View/download PDF
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