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28 results on '"Jacquin, Françoise"'

1. afila, the origin and nature of a major innovation in the history of pea breeding

Author

Tayeh, Nadim, primary, Hofer, Julie M. I., additional, Aubert, Grégoire, additional, Jacquin, Françoise, additional, Turner, Lynda, additional, Kreplak, Jonathan, additional, Paajanen, Pirita, additional, Le Signor, Christine, additional, Dalmais, Marion, additional, Pflieger, Stéphanie, additional, Geffroy, Valérie, additional, Ellis, Noel, additional, and Burstin, Judith, additional

Published
2024
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2. afila, the origin and nature of a major innovation in the history of pea breeding

Author

Tayeh, Nadim, primary, Hofer, Julie, additional, Aubert, Grégoire, additional, Jacquin, Françoise, additional, Turner, Lynda, additional, Kreplak, Jonathan, additional, Paajanen, Pirita, additional, Le Signor, Christine, additional, Dalmais, Marion, additional, Pflieger, Stéphanie, additional, Geffroy, Valérie, additional, Ellis, Noel, additional, and Burstin, Judith, additional

Published
2023
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6. Development of two major resources for pea genomics: the GenoPea 13.2K SNP Array and a high-density, high-resolution consensus genetic map

Author

Tayeh, Nadim, Aluome, Christelle, Falque, Matthieu, Jacquin, Françoise, Klein, Anthony, Chauveau, Aurélie, Bérard, Aurélie, Houtin, Hervé, Rond, Céline, Kreplak, Jonathan, Boucherot, Karen, Martin, Chantal, Baranger, Alain, Pilet-Nayel, Marie-Laure, Warkentin, Thomas D., Brunel, Dominique, Marget, Pascal, Le Paslier, Marie-Christine, Aubert, Grégoire, and Burstin, Judith

Published
2015
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7. Full-length de novo assembly of RNA-seq data in pea (Pisum sativum L.) provides a gene expression atlas and gives insights into root nodulation in this species

Author

Alves-Carvalho, Susete, Aubert, Grégoire, Carrère, Sébastien, Cruaud, Corinne, Brochot, Anne-Lise, Jacquin, Françoise, Klein, Anthony, Martin, Chantal, Boucherot, Karen, Kreplak, Jonathan, da Silva, Corinne, Moreau, Sandra, Gamas, Pascal, Wincker, Patrick, Gouzy, Jérôme, and Burstin, Judith

Published
2015
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8. Highly-multiplexed SNP genotyping for genetic mapping and germplasm diversity studies in pea

Author

Deulvot Chrystel, Charrel Hélène, Marty Amandine, Jacquin Françoise, Donnadieu Cécile, Lejeune-Hénaut Isabelle, Burstin Judith, and Aubert Grégoire

Subjects
Biotechnology, TP248.13-248.65, Genetics, QH426-470
Abstract

Abstract Background Single Nucleotide Polymorphisms (SNPs) can be used as genetic markers for applications such as genetic diversity studies or genetic mapping. New technologies now allow genotyping hundreds to thousands of SNPs in a single reaction. In order to evaluate the potential of these technologies in pea, we selected a custom 384-SNP set using SNPs discovered in Pisum through the resequencing of gene fragments in different genotypes and by compiling genomic sequence data present in databases. We then designed an Illumina GoldenGate assay to genotype both a Pisum germplasm collection and a genetic mapping population with the SNP set. Results We obtained clear allelic data for more than 92% of the SNPs (356 out of 384). Interestingly, the technique was successful for all the genotypes present in the germplasm collection, including those from species or subspecies different from the P. sativum ssp sativum used to generate sequences. By genotyping the mapping population with the SNP set, we obtained a genetic map and map positions for 37 new gene markers. Conclusion Our results show that the Illumina GoldenGate assay can be used successfully for high-throughput SNP genotyping of diverse germplasm in pea. This genotyping approach will simplify genotyping procedures for association mapping or diversity studies purposes and open new perspectives in legume genomics.

Published
2010
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9. Drought response of nodulated roots in pea: from ecophysiological to transcriptomic analyses

Author

Prudent, Marion, Salon, Christophe, Girodet, Sylvie, Jeudy, Christian, Rossin, Nadia, Boucherot, Karen, Jacquin, Françoise, Aubert, Gregoire, Pateyron, Stephanie, Moing, Annick, Balzergue, Sandrine, Vernoud, Vanessa, Agroécologie [Dijon], Université de Bourgogne (UB)-Institut National de la Recherche Agronomique (INRA)-Université Bourgogne Franche-Comté [COMUE] (UBFC)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement, Institut des Sciences des Plantes de Paris-Saclay (IPS2 (UMR_9213 / UMR_1403)), Université Paris-Sud - Paris 11 (UP11)-Université Paris Diderot - Paris 7 (UPD7)-Centre National de la Recherche Scientifique (CNRS)-Université d'Évry-Val-d'Essonne (UEVE)-Institut National de la Recherche Agronomique (INRA), Biologie du fruit et pathologie (BFP), Université Bordeaux Segalen - Bordeaux 2-Institut National de la Recherche Agronomique (INRA)-Université Sciences et Technologies - Bordeaux 1, Institut de Recherche en Horticulture et Semences (IRHS), Université d'Angers (UA)-Institut National de la Recherche Agronomique (INRA)-AGROCAMPUS OUEST, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), Noble Research Institute., Institut National de la Recherche Agronomique (INRA)-Université de Bourgogne (UB)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement-Université Bourgogne Franche-Comté [COMUE] (UBFC), Institut National de la Recherche Agronomique (INRA)-Université Paris-Sud - Paris 11 (UP11)-Université Paris Diderot - Paris 7 (UPD7)-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS), and Université Bordeaux Segalen - Bordeaux 2-Institut National de la Recherche Agronomique (INRA)-Université Sciences et Technologies - Bordeaux 1 (UB)

Subjects
[SDV]Life Sciences [q-bio], [SDE]Environmental Sciences, food and beverages, [SDV.BV]Life Sciences [q-bio]/Vegetal Biology
Abstract

BAP EA GEAPSI INRA; International audience; In the context of climate change, more frequent episodes of water stress are expected, which will negatively impact symbiotic N2 fixation and consequentely plant nitrogen nutrition, growth and productivity. This emphasizes the need to select drought tolerant pea genotypes. In this study, the physiological and transcriptional responses of both roots and nodules to a drought event, followed by a recovery period were investigated. The hybridization of a 40k pea microarray indicated that, as a result of drought, ~390 and ~380 genes were at least 2-fold differencially regulated in roots and nodules, respectively. After rewatering, most of these genes were regulated in an opposite manner to drought effect. This analysis allowed to identify common and specific metabolic regulatory processes involved in drought tolerance and recovery. The most highly deregulated genes in response to drought (including LEA family members, delta-1-pyrroline-5-carboxylate synthase, SWEET family members...) were subsequently analysed for their expression patterns in response to several drought events each followed by a recovery period. We will discuss the behavior of these genes in terms of kinetics and intensity of their expression. Acknowledgement: this study was supported by the Burgundy & Franche-Comté Region (FABER program), Terres Inovia, the FP7-ABSTRESS project and its grant FP7-613551, the FP7-LEGATO project and its grant agreement FP7-289562.

Published
2017

12. Pea in the genomic era

Author

Alves Carvalho, Susete, Aluome, Christelle, Aubert, Gregoire, Cruaud, Corinne, Klein, Anthony, Jacquin, Françoise, Carrere, Sebastien, Brochot, Anne-Lise, Kreplak, Jonathan, Martin, Chantal, Boucherot, Karen, Da Silva, Corinne, Gamas, Pascal, Wincker, Patrick, Brunel, Dominique, Le Paslier, Marie-Christine, Gouzy, Jerome, Burstin, Judith, Agroécologie [Dijon], Institut National de la Recherche Agronomique (INRA)-Université de Bourgogne (UB)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement, Etude du Polymorphisme des Génomes Végétaux (EPGV), Institut National de la Recherche Agronomique (INRA), Genoscope - Centre national de séquençage [Evry] (GENOSCOPE), Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA), Unité mixte de recherche interactions plantes-microorganismes, Centre National de la Recherche Scientifique (CNRS)-Institut National de la Recherche Agronomique (INRA)-Université Toulouse III - Paul Sabatier (UT3), and Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées

Subjects
[SDV]Life Sciences [q-bio], [SDE]Environmental Sciences, [SDV.BV]Life Sciences [q-bio]/Vegetal Biology, ComputingMilieux_MISCELLANEOUS
Abstract

National audience

Published
2014

13. Towards genome-wide breeding for yield stability in spring pea

Author

Klein, Anthony, Tayeh, Nadim, Siol, Mathieu, Herbommez, J.F., Pichon, Jean-Philippe, Duarte, Jorge, Duborjal, H., Houtin, Hervé, Blanc, Norbert, Valdrini, Jean-Marc, Walczak, Patrice, Bleriot, Olivier, Hanocq, Eric, Chassin, Alain, Bidon, Marc, Huart, Myriam, Touratier, Michael, Martin, Chantal, Jacquin, Françoise, Aubert, Gregoire, Burstin, Judith, Agroécologie [Dijon], Institut National de la Recherche Agronomique (INRA)-Université de Bourgogne (UB)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement, Adrien Momont & fils SARL, BIOGEMMA, Domaine expérimental d'Époisses - UE0115 U2E (DIJ EPOISSES), Institut National de la Recherche Agronomique (INRA), Domaine expérimental de la Motte au Vicomte (RENN RHEU UE), Fourrages Environnement Ruminants Lusignan (FERLUS), Unité Expérimentale Grandes Cultures Innovation Environnement - Picardie (GCIE), UE 1375 Phénotypage Au Champ des Céréales, Institut National de la Recherche Agronomique (INRA)-Santé des plantes et environnement (S.P.E.)-Biologie et Amélioration des Plantes (BAP)-Phénotypage Au Champ des Céréales (PHACC), and Institut National de la Recherche Agronomique (INRA). FRA.

Subjects
pea, genomic selection, [SDV]Life Sciences [q-bio], [SDE]Environmental Sciences, food and beverages, [SDV.BV]Life Sciences [q-bio]/Vegetal Biology, [INFO]Computer Science [cs]
Abstract

National audience; Field pea (Pisum sativum L.) is an attractive crop for human and livestock nutrition and an important contributor to low-input farming systems. Multiple environmental challenges face field pea production and penalize yield regularity. The work-package 1 of the French National ANR project PeaMUST aims at identifying efficient gene combinations for yield stability in low-input cropping systems through genomic selection. Genomic selection is a new breeding method that uses increasingly abundant genomic information and statistical modelling to select superior genotypes based on genomic estimated breeding values (GEBVs). The main goals are: 1- to build a genomic selection prediction equation for yield stability in low-input cropping systems, 2- to implement a genomic selection program and, 3- to evaluate the genetic progress obtained after one and two genomic selection cycles.

Published
2014

14. Genomic Prediction in Pea: Effect of Marker Density and Training Population Size and Composition on Prediction Accuracy

Author

Tayeh, Nadim, primary, Klein, Anthony, additional, Le Paslier, Marie-Christine, additional, Jacquin, Françoise, additional, Houtin, Hervé, additional, Rond, Céline, additional, Chabert-Martinello, Marianne, additional, Magnin-Robert, Jean-Bernard, additional, Marget, Pascal, additional, Aubert, Grégoire, additional, and Burstin, Judith, additional

Published
2015
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16. Combining new genotyping technologies and in silico approaches to study Pisum sativum L. Genetics and synteny with Medicago truncatula

Author

Bordat, Amandine, Savois, Vincent, Deulvot, Chrystel, Nicolas, Marie, Bourgeois, Michael, Donnadieu, Cecile, Potier, Jean, Chauveau, Aurelie, Jacquin, Françoise, Houtin, Hervé, Rond, Céline, Gouzy, Jerome, Marget, Pascal, Aubert, Gregoire, Burstin, Judith, UMR 0102 - Unité de Recherche Génétique et Ecophysiologie des Légumineuses, Génétique et Ecophysiologie des Légumineuses à Graines (UMRLEG) (UMR 102), Etablissement National d'Enseignement Supérieur Agronomique de Dijon (ENESAD)-Institut National de la Recherche Agronomique (INRA)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement-Etablissement National d'Enseignement Supérieur Agronomique de Dijon (ENESAD)-Institut National de la Recherche Agronomique (INRA)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement, Laboratoire de Génétique Cellulaire (LGC), Institut National de la Recherche Agronomique (INRA)-Ecole Nationale Vétérinaire de Toulouse (ENVT), Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées, Unité mixte de recherche interactions plantes-microorganismes, Centre National de la Recherche Scientifique (CNRS)-Institut National de la Recherche Agronomique (INRA)-Université Toulouse III - Paul Sabatier (UT3), and ProdInra, Migration

Subjects
[SDV] Life Sciences [q-bio], [SDE] Environmental Sciences, COMPARATIVE MAPPING, IN SILICO APPROACHES, [SDV]Life Sciences [q-bio], [SDE]Environmental Sciences, PISUM SATIVUM L, GENOME DATABASE, medicago truncatula, ComputingMilieux_MISCELLANEOUS
Abstract

International audience

Published
2010

17. The TILLING approach in the search for genes involved in grain yield and quality in pea (Pisum sativum)

Author

MOLINA, Carlos, Aubert, Gregoire, Jacquin, Françoise, Rond, Céline, Cassecuelle, Florence, Le Signor, Christine, Dalmais, Marion, Thompson, Richard, Burstin, Judith, UMR 0102 - Unité de Recherche Génétique et Ecophysiologie des Légumineuses, Génétique et Ecophysiologie des Légumineuses à Graines (UMRLEG) (UMR 102), Etablissement National d'Enseignement Supérieur Agronomique de Dijon (ENESAD)-Institut National de la Recherche Agronomique (INRA)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement-Etablissement National d'Enseignement Supérieur Agronomique de Dijon (ENESAD)-Institut National de la Recherche Agronomique (INRA)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement, Unité de recherche en génomique végétale (URGV), Institut National de la Recherche Agronomique (INRA)-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS), and ProdInra, Migration

Subjects
[SDV] Life Sciences [q-bio], [SDE] Environmental Sciences, pea grain development, tilling, sucrose transporter, [SDV]Life Sciences [q-bio], [SDE]Environmental Sciences, sugar metabolism, cell wall invertase, ComputingMilieux_MISCELLANEOUS
Abstract

International audience

Published
2010

18. Genetic diversity and trait genomic prediction in a pea diversity panel

Author

Burstin, Judith, primary, Salloignon, Pauline, additional, Chabert-Martinello, Marianne, additional, Magnin-Robert, Jean-Bernard, additional, Siol, Mathieu, additional, Jacquin, Françoise, additional, Chauveau, Aurélie, additional, Pont, Caroline, additional, Aubert, Grégoire, additional, Delaitre, Catherine, additional, Truntzer, Caroline, additional, and Duc, Gérard, additional

Published
2015
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19. Catherine Clémentin-Ojha, Les chrétiens de l’Inde, entre castes et Églises

Author

Jacquin, Françoise

Abstract

Le livre s’intitulant Les chrétiens de l’Inde et non « Les Églises en Inde », oriente d’entrée vers autre chose qu’une austère classification. Son sous-titre Entre castes et Églises, qui aurait pu en être avantageusement le titre, précise bien le propos. On s’interroge sur l’opportunité d’un troisième lieu, administratif celui-là : hindouisme et nation indienne sont tellement imbriqués ! En effet, les chrétiens de l’Inde, se doivent d’assumer une triple appartenance : à leur caste, à leur Égl...

Published
2009

20. Pea seed PQLs: what can learn about the genetic control of the seed protein composition in pea ?

Author

Bourgeois, Michael, Bordat, Amandine, Marget, Pascal, Huart, Myriam, Jacquin, Françoise, Cassecuelle, Florence, Houtin, Hervé, Rond, Céline, Burstin, Judith, Association Européenne des Protéagineux, ., UMR 0102 - Unité de Recherche Génétique et Ecophysiologie des Légumineuses, Génétique et Ecophysiologie des Légumineuses à Graines (UMRLEG) (UMR 102), Etablissement National d'Enseignement Supérieur Agronomique de Dijon (ENESAD)-Institut National de la Recherche Agronomique (INRA)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement-Etablissement National d'Enseignement Supérieur Agronomique de Dijon (ENESAD)-Institut National de la Recherche Agronomique (INRA)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement, Association Européenne des Protéagineux, Partenaires INRAE, and ProdInra, Migration

Subjects
[SDV] Life Sciences [q-bio], [SDE] Environmental Sciences, GENETIC CONTROL, PROTEIN COMPOSITION, [SDV]Life Sciences [q-bio], PQL, [SDE]Environmental Sciences, PEA, DIGESTIBILITY, QUANTITATIVE PROTEOMICS, ComputingMilieux_MISCELLANEOUS
Abstract

National audience

Published
2007

28. Patterns of Genetic Structure and Linkage Disequilibrium in a Large Collection of Pea Germplasm.

Author

Siol M, Jacquin F, Chabert-Martinello M, Smýkal P, Le Paslier MC, Aubert G, and Burstin J

Subjects
Bayes Theorem, Ecotype, Gene Frequency genetics, Genome, Plant, Polymorphism, Single Nucleotide genetics, Seasons, Linkage Disequilibrium genetics, Pisum sativum genetics, Seeds genetics
Abstract

Pea ( Pisum sativum , L.) is a major pulse crop used both for animal and human alimentation. Owing to its association with nitrogen-fixing bacteria, it is also a valuable component for low-input cropping systems. To evaluate the genetic diversity and the scale of linkage disequilibrium (LD) decay in pea, we genotyped a collection of 917 accessions, gathering elite cultivars, landraces, and wild relatives using an array of ∼13,000 single nucleotide polymorphisms (SNP). Genetic diversity is broadly distributed across three groups corresponding to wild/landraces peas, winter types, and spring types. At a finer subdivision level, genetic groups relate to local breeding programs and type usage. LD decreases steeply as genetic distance increases. When considering subsets of the data, LD values can be higher, even if the steep decay remains. We looked for genomic regions exhibiting high level of differentiation between wild/landraces, winter, and spring pea, respectively. Two regions on linkage groups 5 and 6 containing 33 SNPs exhibit stronger differentiation between winter and spring peas than would be expected under neutrality. Interestingly, QTL for resistance to cold acclimation and frost resistance have been identified previously in the same regions., (Copyright © 2017 Siol et al.)

Published
2017
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