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Phenylalanine ammonia-lyase (PAL) acts as the rate-limiting enzyme for anthocyanin biosynthesis through the phenylpropanoid pathway, a crucial component of plant secondary metabolism. The PAL gene family plays a crucial role in plants' defense and stress responses, but its in silico identification and expression analyses in Brassica oleracea under different abiotic stresses remain unexplored. In this study, nine BolPAL, seven BrPAL, four AtPAL, and seventeen BnPAL genes were obtained from the genomes of B. oleracea, Brassica rapa, Arabidopsis thaliana, and Brassica napus, respectively. Segmental duplication and purifying selection are the causes of the BolPAL gene's amplification and evolution. The BolPAL genes with comparable intron–exon architectures and motifs were grouped together in the same clade. Three categories comprised the cis-regulatory elements: abiotic stressors, phytohormones, and light. According to the results of the qRT-PCR experiments, the majority of the BolPAL genes were expressed highly under MeJA, a low temperature, and a high temperature, and they were downregulated under ABA. Under white light (100 µmol m−2 s−1) with 50, 100, or 150 µmol m−2 s−1 far-red (FR), only a small number of the PAL genes were expressed at 50 and 100 µmol m−2 s−1 FR, while the majority of the PAL genes were slightly elevated at 150 µmol m−2 s−1 FR. This work offers a theoretical foundation for molecular breeding research to investigate the role of BolPAL genes and their role in anthocyanin biosynthesis. [ABSTRACT FROM AUTHOR]

This study aimed to comparatively analyze the flavonoid contents of the purple-colored cultivar Xianghongtai No. 1 (XHT1H, R) and the green-colored cultivar Yinong 50 tian Caixin (YN50T, G). The flavonoid compounds were separated and identified by ultra-performance liquid chromatography-tandem mass spectrometry. Principal component analysis (PCA), hierarchical cluster analysis, and orthogonal partial least partial-least squares discrimination analysis (OPLS-DA) were used to analyze metabolomics data and screen for differential metabolites in Hong Caitai and Caixin. PCA revealed significant differences in the flavonoid compound contents between the two varieties. OPLS-DA identified 170 different flavonoid metabolites, including 56 flavonols, 38 anthocyanidins, and 32 flavones. The anthocyanins included 25 cyanidin glycosides, six delphinidin glycosides, three peonidin glycosides, and three petunidin glycosides. Additionally, six of the top ten metabolites with higher content in Hong Caitai than in Caixin were cyanidins. Based on the differential flavonoids profiles of the two varieties, cyanidin, delphinidin, peonidin, and petunidin were associated with the pigmentation in Hong Caitai. These results provide a reference for further study of the mechanism of stem color formation and pigment utilization in Caitai. [ABSTRACT FROM AUTHOR]