72 results on '"JAMES JD"'
Search Results
2. Factory acceptance of the automated alignment system for the Magdalena Ridge Observatory Interferometer
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Luis, James JD, Buscher, David F, Creech-Eakman, Michelle J, Haniff, Christopher A, Salcido, Chris, Sun, Xiaowei, and Young, John S
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beacon ,beam alignment ,shear ,active optics ,optical interferometry ,tilt ,MROI ,Shack-Hartmann - Abstract
The Magdalena Ridge Observatory Interferometer (MROI) will soon incorporate an Automated Alignment System (AAS) to help limit visibility losses due to beam misalignment to 1%. This paper focuses on two key AAS components: (1) a dual-wavelength beacon at each unit telescope and (2) a detector for measuring the shear and tilt of beams of light arriving from the telescopes in the beam combining laboratory. We share initial results of acceptance tests for these components. Finally, we outline a plan for fully validating their performance against a list of derived requirements.
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- 2022
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3. Home- and Community-Based Provider Preparation for Pennsylvania’s Managed Long-term Services and Supports
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Mph Todd Bear PhD, Evan S. Cole, A. Everette James Jd, and Howard B. Degenholtz
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Community based ,Quality Assurance, Health Care ,Medicaid ,State Health Plans ,Managed Care Programs ,Community Participation ,Pennsylvania ,United States ,Term (time) ,Nursing ,Humans ,Managed care ,Community Health Services ,Business ,Life-span and Life-course Studies ,Gerontology ,Demography - Abstract
As Pennsylvania implements its managed long-term services and supports program, we explore how home- and community-based providers are preparing for and perceiving the transition through an online survey. We summarize responses and conduct chi-square analysis to measure differences between select provider groups. Despite high levels of uncertainty about program impact, over 84% of respondents plan to participate. We found that providers in the first implementation phase had more strategic and operational discussions with MCOs than the other two phases (
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- 2021
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4. Whole genome methylation analysis of non-dysplastic Barretts oesophagus that progresses to invasive cancer
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Dilworth, MP, primary, Nieto, T, additional, Stockton, JD, additional, Whalley, C, additional, Tee, L, additional, James, JD, additional, Hallissey, MT, additional, Hejmadi, R, additional, Trugdill, N, additional, Tucker, O, additional, and Beggs, AD, additional
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- 2017
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5. Obliteration of Latent Fingerprints
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James, JD, Pounds, CA, and Wilshire, B
- Abstract
Comprehensive trials have established that latent fingerprints can be rendered partially or totally unidentifiable during print development by the following:(a) ridge smearing, which depends on the type and age of the latent print and also on the type of brush and brushing procedures used, and(b) overpowdering and/or overbrushing of the print.These causes of pattern obscuration are discussed in terms of their implications for fingerprint development procedures, since up to 10% of prints developed at crime scenes can be difficult or even impossible to identify.
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- 1991
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6. Flake Metal Powders for Revealing Latent Fingerprints
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James, JD, Pounds, CA, and Wilshire, B
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Fine flake powders, having flake diameters ranging from 50 to 1 μm and stearic acid/powder ratios varying from 0 to 50 weight percent, were produced by laboratory-scale milling of aluminum, zinc, copper, and iron powders. The effectiveness of these flakes for detection of latent fingerprints was then assessed by comparing the print qualities obtained when using these flake powders with those achieved using commercial aluminum, commercial black, and commercial dark magnetic dusting powders. While the commercial aluminum powder was found to have an average flake diameter and stearic acid level close to the optimum values required to obtain bright fingerprints, several potential avenues of development were identified which could lead to the commercial availability of superior black powders.
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- 1991
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7. Magnetic Flake Powders for Fingerprint Development
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James, JD, Pounds, CA, and Wilshire, B
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Different types of fine magnetic flake powders, which could be applied to latent fingerprints using a standard magnetic applicator, were produced with the aim of identifying product ranges suitable for bright fingerprint development on dark surfaces. Impressive bright print qualities were achieved with the smooth-surfaced flake manufactured by milling of spherical carbonyl iron and austenitic stainless steel powders. Compared with the results obtained for commercial aluminum fingerprint powders, these new magnetic flake products proved almost equivalent for print development on smooth surfaces and superior for print detection on rough surfaces.
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- 1993
- Full Text
- View/download PDF
8. Physical and chemical properties and sources of aerosol across southern West Africa during the monsoon
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Haslett, Sophie Louise, ALLAN, JAMES JD, Coe, Hugh, and Allan, James
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biomass burning ,atmospheric science ,West Africa ,aerosols - Abstract
Aerosol particles are ubiquitous in the atmosphere and their properties impact on the atmospheric energy balance. They scatter and absorb incoming sunlight and can perturb cloud microphysical properties, which affects cloud lifetimes and albedo. Africa is one of the worldâs largest sources of aerosol due to both its large deserts and prolific biomass burning during the dry seasons. Nevertheless, the continent's atmosphere has, to date, been among the least studied in the world. The southern coast of West Africa is developing rapidly, with both population and anthropogenic emissions being predicted to increase substantially in coming years. It is therefore becoming ever more important to understand the characteristics of aerosols in this region, which will have consequences for issues as diverse as local health and global climate change. This project addresses this problem in two ways: first, laboratory experiments were carried out to characterise biomass burning aerosol at source. Biomass burning is one of the most poorly understood aerosol sources, but one of the most prevalent in tropical regions. Second, aircraft observations were made in southern West Africa during the Dynamics-Aerosol-Chemistry-Cloud Interactions in West Africa (DACCIWA) field campaign in summer 2016, to observe the broad-scale distribution of chemical and physical aerosol properties. Results were collected in-situ with Aerodyne Aerosol Mass Spectrometers (AMS) and other online aerosol instrumentation; they were considered alongside observations from DACCIWA ground sites and model results. Distinguishable chemical signatures were reliably observed during three phases of combustion events in the laboratory study. This gave insight into the mechanisms linking combustion phases and emissions. Airborne observations in southern West Africa revealed a remarkably consistent background of aged, accumulation mode aerosol present across the region in the boundary layer, including in the region upwind of the cities on the south coast. It was demonstrated that this likely originated from large-scale biomass burning in central and southern Africa, which had become entrained into the boundary layer above the Atlantic and transported north. A second result from the DACCIWA campaign showed that the hygroscopic growth of these particles, due to the high humidity in the region during June and July, more than doubled the mean dry aerosol optical depth. Taken together, these findings shed light on the substantial impacts that biomass burning aerosol, in particular, has on the atmosphere above southern West Africa.
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- 2018
9. The development of an aerosol time-of-flight mass spectrometer for the measurement of mineral dust
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Marsden, Nicholas, ALLAN, JAMES JD, Coe, Hugh, and Allan, James
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complex mixtures ,Aerosol ,Mass Spectrometry ,Mineral Dust - Abstract
The development of new analytical techniques is one of the driving forces in the advancement of scientific understanding. The measurement of the properties of aerosol particles is an active area of research due to the impact aerosol has on atmospheric processes. Single particle size and composition are key properties that govern many atmospheric processes, but the measurement of these properties is challenging due to the large dynamic range of size and composition that exists in the environment. Mineral dust represents a significant fraction of the global aerosol mass loading and has a profound impact on the earth's radiative budget through the direct interaction with solar and terrestrial radiation, and by affecting microphysical properties of clouds. In addition, mineral dust is involved in the geochemical cycling of many compounds that are vital for the health and vitality of ecosystems. The importance of the chemical and crystallographic properties of a material, or mineral phase, has been highlighted recently. Measurements of the elemental composition of single particles is possible with off-line analysis of dust collected on filters , but mineral phase is usually obtained from X-ray diffraction of bulk samples. These techniques are labour intensive and the lack of ambient measurements is a limiting factor in the development of models that attempt to resolve the complexity of atmospheric processes. Time-of-flight mass spectrometry (TOF-MS) is well suited to on-line single particle composition measurements due its sensitivity and high temporal resolution. Single particle mass spectrometry (SPMS) is a class of TOF-MS technique that is able to identify mineral dust particles from their chemical signature in the mass spectrum. Analysis of refractory mineral dust by mass spectrometry requires laser desorption ionisation (LDI) by high energy pulsed lasers, a process that renders the composition measurement non-quantitative due to incomplete ionisation and matrix effects. Consequently, the identification of mineral phase is not possible because the reproducibility of the measurement is lower than the natural variation between common minerals. This thesis reports the development of a commercially available single particle mass spectrometer for the measurement of the physiochemical properties of mineral dust. The optical particle detection system is improved for the more efficient detection of single particles in the size range relevant to the ambient measurement of mineral dust aerosol, and a model is developed that will aid the further development of particle detection in SPMS. A novel method for the on-line differentiation of mineral phase in single particles is presented which exploits differences in ion arrival times at the TOF-MS detector of a silicate molecular ion species, that arise from the influence of mineral phase on the ion formation process during the LDI process. The efficacy of the technique is demonstrated with the differentiation of mineral phase in laboratory generated mineral dust from clay mineral standards. The deployment of the improved instrument to measure Saharan dust outflow resulted in the first ever on-line identification of the clay mineral fraction in ambient mineral dust.
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- 2017
10. Aircraft Observations of Biomass Burning Aerosols over Tropical South America
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Darbyshire, Eoghan John Neil, ALLAN, JAMES JD, Allan, James, and Coe, Hugh
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Aerosols ,Climate ,Biomass Burning ,Atmospheric Measurement ,Fire ,complex mixtures ,Amazon - Abstract
Biomass burning aerosol can perturb the atmospheric energy budget and hence regional and global climates via interactions with solar radiation and cloud microphysics. Furthermore, there are significant deleterious effects on human and ecosystem health. The magnitude and nature of these impacts is driven by the aerosols physiochemical properties and their vertical distribution. However the drivers of these are poorly characterised, especially in the tropics where widespread biomass burning is co-located with complex cloud fields and processes, high levels of solar insolation and rapid land use change.In this work the key drivers determining the geographic, vertical, meteorological and temporal variability of biomass burning haze in tropical South America are identified and quantified. This is based on an analysis of simultaneous and vertically resolved measurements of aerosol burden, aerosol intrinsic properties (composition, size, hygroscopicity and optics), gas phase mixing ratios and atmospheric thermodynamics. These novel in-situ measurements were undertaken during research flights as part of the South America Biomass Burning Analysis (SAMBBA) campaign in September/October 2012. A clear difference is observed between the two distinct fire regimes in tropical South America. Cerrado (deforestation) regimes in the east (west) are found to be characterised by more flaming (smouldering) combustion, leading to a contrast in emissions with relatively more (less) refractory black carbon to organic aerosol and smaller (larger) aerosol sizes. This results in a population which absorbs (scatters) more incoming solar radiation. Furthermore, the aerosol vertical distribution differs between regimes: in the east (west) biomass burning aerosol of a similar loading is distributed from the surface to ~4 km (~2 km). This is driven by contrasting thermodynamics, in particular convective mixing, and plume injection to greater altitudes in the east. This work is the first demonstration of a contrast between these two regions from in-situ measurements. The additional atmospheric heating from biomass burning aerosol, calculated from in-situ measurements for the first time in the tropics, is significant in both fire regimes, but especially so in the eastern Cerrado where it is greater than that from molecular absorption. Heating also increases with altitude in the east, owing to the prevalence of flaming combustion which is observed to inject more absorbing emissions to higher altitudes. Models do not consider this process, nor do they capture (via emissions factors) the regional difference identified. As such, the associated effects on atmospheric stability, cloud formation and large scale dynamics may not be adequately considered in model simulations and thus predictions may not be representative.To contextualise the in-situ measurements, satellite derived climatologies of fire and aerosol properties are presented for the past decade. In the west the aerosol and trace gas burden has significantly declined, in association with deforestation rates, total fire count and fire intensity. In the east, a small increase in aerosol and trace gas burden is coupled to decreasing single scattering albedos and increasing absorption at near-UV wavelengths, fire intensity and relative fire occurrence. The findings presented in this work offer new insight into the nature of tropical biomass burning aerosols: on how and why fire regimes result in contrasting physiochemical properties; on how the population is vertically distributed and why this varies between regimes; and on the significant additional heating biomass burning aerosol transfers to the atmosphere. In tropical South America specifically, the heating rate is greatest in the eastern Cerrado regions, co-located with increases in fire count and intensity and thus likely to have an increasingly significant impact on weather and climate in the region.
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- 2017
11. Characterisation of the Chemical Properties and Behaviour of Aerosols in the Urban Environment
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Young, Dominique Emma, ALLAN, JAMES JD, Coe, Hugh, and Allan, James
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Aerosols ,Air quality ,Chemical composition ,Human health ,Urban ,Solid fuel ,Positive matrix factorisation (PMF) ,Cooking ,Organic aerosols ,Pollution ,Secondary inorganic aerosols ,Aerosol Mass Spectrometer (AMS) - Abstract
Atmospheric aerosols have adverse effects on human health, air quality, and visibility and frequently result in severe pollution events, particularly in urban areas. However, the sources of aerosols and the processes governing their behaviour in the atmosphere, including those which lead to high concentrations, are not well understood thus limit our ability to accurately assess and forecast air quality.Presented here are the first long-term chemical composition measurements from an urban environment using an Aerodyne compact Time-of-Flight Aerosol Mass Spectrometer (cToF-AMS). Organic aerosols (OA) were observed to account for a significant fraction (44%) of the total non-refractory submicron mass during 2012 at the urban background site in North Kensington, London, followed by nitrate (28%), sulphate (14%), ammonium (13%), and chloride (1%). The sources and components of OA were determined using Positive Matrix Factorisation (PMF) and attributed as hydrocarbon-like OA (HOA), cooking OA (COA), solid fuel OA (SFOA), type 1 oxygenated OA (OOA1), and type 2 oxygenated OA (OOA2), where HOA, COA, and SFOA were observed to be of equal importance across the year. The concentration of secondary OA increased during the summer yet the extent of oxidation, as defined by the oxygen content, showed no variability during the year.The main factors governing the diurnal, monthly, and seasonal trends observed in all organic and inorganic species were meteorological conditions, specific nature of the sources, and availability of precursors. Regional and transboundary pollution influenced total aerosol concentrations and high concentration events were observed to be governed by different factors depending on season. High-Resolution ToF-AMS measurements were used to further probe OA behaviour, where two SFOA factors were derived from PMF analysis in winter, which likely represent differences in burn conditions. In the summer an OA factor was identified, likely of primary origin, which was observed to be strongly associated with organic nitrates and anthropogenic emissions.This work uses instruments and techniques that have not previously been used in this way in an urban environment, where the results further the understanding of the chemical components of urban aerosols. Aerosol sources are likely to change in the future with increases in solid fuel burning as vehicular emissions decrease, with significant implications on air quality and health. Thus it is important to understand aerosol sources and behaviour in order to develop effective pollution abatement strategies.
- Published
- 2014
12. Single-particle characterisation of black carbon in urban and biomass burning plumes and impacts on optical properties
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Taylor, Jonathan William, ALLAN, JAMES JD, Allan, James, and Coe, Hugh
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Aerosols ,Black carbon ,Soot ,Optical properties ,Climate ,Air quality ,Air pollution ,Climate change ,Mie theory - Abstract
Black carbon (BC) is the light-absorbing component of soot, a combustion-generated aerosol that warms the climate by absorbing solar radiation. Its impacts on climate depend on its microphysical properties, which are modified by atmospheric processes including condensation, coagulation and wet removal. State of the art climate models consider soot in a concentric core/shell configuration, with a BC core coated by nonrefractory material such as organics or sulphate. Within this model, thicker coatings enhance visible light absorption, but also wet removal efficiency, and these have opposing effects on the total amount of light absorbed over BC’s lifetime. How well the core/shell model can calculate Mass Absorption Coefficient (MAC, the ratio of absorption to BC mass) is uncertain, as real soot forms more complex (often fractal) shapes, and detailed optical models using these morphologies predict the core/shell model may under- or over-estimate MAC depending on the precise properties of the particles.Few reliable measurements of variations in ambient MAC are available, as most older measurement techniques suffer from systematic uncertainties. In this work, a Single Particle Soot Photometer (SP2) and PhotoAcoustic Soot Spectrometer (PASS) were used to measure BC mass concentration and absorption, and these instruments do not suffer from such uncertainties. The SP2 was also used to report core size and coating thickness distributions that are required to test state of the art climate models.Firstly, a method was developed to minimise bias in the measured coating thicknesses related to the limited detection range of the SP2. The sensitivity of this technique to the assumed density and refractive index of the BC core was also explored, and the most appropriate parameters to use with ambient measurements were determined.Core and shell distributions were measured in Pasadena, California under a range of different photochemical ages. These were then used to calculate MAC, which was compared to that measured using the SP2 and PASS. The measured and modelled MAC agreed within 10% at 532 nm, though this was dependent on the assumed refractive index of the BC core. Overall MAC increased by 15 –25% in around one third of a day of photochemical ageing. This is quite modest compared to some climate models, but not compared to the previous best estimate, which predicted MAC may increase by a factor of ~1.5 over BC’s lifetime.Core and coating distributions were also measured in Canadian boreal biomass burning plumes. A case study was presented comparing the properties of BC in three plumes, one of which had passed through a precipitating cloud. It was demonstrated that larger and more coated BC-containing particles were removed more efficiently, in agreement with previous thermodynamic theory. By calculating MAC using the measured core/shell distributions and comparing to measured scattering, it was demonstrated that the MAC and single-scattering albedo in the plumes were likely not significantly affected by the wet removal, as greater differences were observed between the two plumes not affected by precipitation. This thesis focuses on measuring the properties of soot particles in the atmosphere. Soot absorbs the sun's radiation and heats the air, and is the second strongest contributor to current global warming behind CO2. Reducing soot emissions may delay the onset of warming, but in order to assess the impacts this could have, we need to measure the properties of soot and how they change with time.Soot itself is made up of black carbon, which absorbs light, and other material that may reflect light but not strongly absorb it. The sizes of these two parts and the way they mix together is thought to affect how absorbing the black carbon is, by deflecting more or less light onto it. This also affects how soot interacts with water, which is important as the main way soot is removed from the atmosphere is by being taken up by clouds and rained out. Both of these processes depend on the properties of the soot, such as size, shape and what other components are mixed in with the absorbing black carbon.The first part of this thesis focuses on improving a previous method to measure the size of soot particles and mixing between different components. This method was then used in different environments to explore the properties of soot under different conditions. In the Los Angeles area, the size and mixing of urban soot were measured as it ages. The amount of light absorbed increased with time, but to a lesser extent than might have been expected. In Canadian forest fire plumes, some of which passed through clouds, the measurements showed that larger particles were rained out more efficiently than others. Studies like these will improve our understanding of the effects soot has on the climate, and help test and develop current and future climate models in order to better inform policymakers. To build upon this work, similar measurements should be made in different environments around the globe.
- Published
- 2013
13. Aerosols in and Above the Bornean Rainforest
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Robinson, Niall Hamilton, ALLAN, JAMES JD, Allan, James, and Coe, Hugh
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atmospheric chemistry ,climate change ,aerosol ,Borneo ,deforrestation ,rainforest ,tropics - Abstract
Atmospheric aerosols affect climate directly by scattering and absorbing solar radiation, and indirectly by affecting the albedo and lifetime of clouds through their role as cloud condensation nuclei. Aerosol sources, and the processes that govern their evolution in the atmosphere are not well understood, making the aerosol effects a significant source of uncertainty in future climate predictions. The tropics experience a large solar flux meaning that any radiative forcing in this region is particularly important. Despite this, there is a paucity of data from the tropics, with the majority of previous studies performed in the northern mid-latitudes. The few in-situ studies of aerosol composition that have been performed are all in the continental settings of Amazonia or Africa. Until now the “maritime continent” region of South East Asia has remained unstudied. Presented here are Aerosol Mass Spectrometer composition measurements from the Oxidant and Particulate Processes Above a South East Asian Rainforest project, performed from ground and airborne measurement platforms in and around the rainforest of Borneo, South-East Asia. Unlike the previous tropical studies, this allows for the characterisation of a region of mixed terrestrial and marine biogenic emissions. The region is also undergoing rapid land use change, with forest being converted for agriculture, particularly the cultivation of oil palms. This study also allows for the characterisation of a region that is beginning to undergo land use change, providing insight into emissions from different land use types, and providing a benchmark to measure the effects of land use change against in the future.Total sub-micron aerosol loadings were found to be lower than studies in the northern mid-latitudes, similar to previous tropical studies. However, aerosol composition was different to that observed in Amazonia, with much greater sulphate loadings in Borneo. A regional background of sulphate and highly oxidised organic aerosol was identified, with organic aerosol that is less oxidised originating inland. Aerosol confined to a shallow marine boundary layer upwind of Borneo is lofted higher into the troposphere as it advects across the island, with regional aerosol being removed and biogenic terrestrial aerosol added. The lofting of this aerosol is expected to extend its atmospheric lifetime and change its role in the Earth’s radiative budget. A novel organic aerosol signal was identified which correlated with gas phase isoprene oxidation products, strongly suggesting that it was significant of isoprene SOA. Aerosol associated with this signal made up a substantial fraction of the organic aerosol loading. This opens up the opportunity for future studies to make isoprene SOA measurements using the Aerosol Mass Spectrometer in other studies. A substantial amount of the organic aerosol in Borneo was attributed to isoprene oxidation. Aerosols (microscopic particles suspended in the air) play an important role in the climate of the Earth. They can absorb or reflect sunlight, changing the amount of radiation that goes into heating the Earth. They also play an important role in cloud formation, acting as “nuclei” for cloud droplets to form upon. They tend to make clouds whiter and longer lasting, acting to reflect more sunlight back into space. Their role in cloud formation and heating of the atmosphere can also affect rainfall, potentially even affecting systems as large as the Indian Monsoon. Despite the important influence aerosol can have on climate, their affects are still not precisely understood, in fact the Intergovernmental Panel for Climate Change state that they are one of the biggest unknowns in predicting future climate change.To predict the effect man-made aerosols have on climate, we first need to understand the role of natural aerosols. This is particularly important as these natural systems are being rapidly changed thanks to deforestation for timber, crops and to build new settlements. We can only predict what effects this land use change will have on the environment if we have a good understanding of the natural systems. Many studies of atmospheric aerosol have been conducted around the more developed parts of the Northern Hemisphere (e.g. Europe, North America, Japan) however there have been very few studies in the tropics, in fact only a handful in South America and Africa. It is particularly important to understand aerosol climate effects in the tropics as the large amount of sun the region experiences means it can make a bigger difference than in other, less sunny parts of the World.One region of the tropics that has received particularly little attention in recent studies is the “maritime continent” — South East Asia. This region is made up of a network of tropical islands, so it is likely to be very different from the other continental regions that have previously been studied in the tropics. The measurements presented in this thesis are from Borneo, a very large island in South East Asia and home to one of the largest rainforests in theWorld. The forest is being rapidly cut down to make way for plantations to manufacture palm oil — a ubiquitous ingredient as “vegetable oil” in very many high street products.This work found that aerosols in Borneo are indeed very different from those measured in the Amazon Rainforest—it seems that emissions from the sea are a large source of aerosol. The project found that palm oil produces a very different mixture of gases from the rainforest and the work presented here shows that these gases react in an unexpected way to condense and make aerosol. It could even be the case that the sea emissions are the reason that so much of this unexpected aerosol is formed, although more work needs to be done to figure out the precise chemistry. When air is transported across Borneo, it tends to get lifted higher into the atmosphere, meaning it is above a lot of the rain (which can remove the aerosol though wash-out) and is likely to have a longer atmospheric lifetime. Results from other studies show that man-made pollution can increase the amount of natural gases that go into making aerosol. This means that if Borneo becomes more polluted in the future there could be a lot of aerosol produced, not just from the pollution itself, but from natural gases from the rainforest and crops which are not currently converted to aerosol.
- Published
- 2011
14. Probing the interstellar medium using laboratory samples
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King, Ashley, GILMOUR, JAMES JD, HENKEL, TORSTEN T, Lyon, Ian, Gilmour, James, and Henkel, Torsten
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Astrophysics::Earth and Planetary Astrophysics ,presolar, TOFSIMS, SiC - Abstract
The aim of this thesis is to investigate the effects of interstellar processing using presolar samples. Dust in the interstellar medium is predicted to have experienced grain-grain and grain-gas collisions, cosmic-ray bombardment, or the formation of ices on their surfaces. Each process is likely to have altered presolar grains. The grains are extracted from meteorites and can be analyzed in the laboratory to try and understand these processes. The main analytical tool used in this research was a new time-of-flight secondary ion mass spectrometry instrument equipped with a Au-cluster primary ion source. Analysis of presolar grains required that a rigorous experimental procedure was developed. A depth-profiling technique for the analysis of micron-sized samples was produced and the limitations of the technique considered. Secondary ion mass spectrometry suffers from matrix effects, so homogeneous silicate glass standards were analyzed. The use of Au-cluster primary ions was shown to enhance practical secondary ion yields relative to those with Au+, consistent with increased sputter rates. Relative sensitivity factors for major and trace elements in the standards were obtained using both normal and delayed secondary ion extraction techniques. Depth-profiles of Li, B, Mg, Al, K, Ca, Ti, V, Cr and Fe were obtained from eleven presolar SiC grains. In some SiC grains, the abundances of several elements were up to orders-of-magnitude higher in the outer ~200nm relative to the grain cores. This was attributed to the implantation of interstellar matter, accelerated to velocities of ~1000kms-1 by supernovae shockwaves. Other SiC grains contained homogeneously distributed trace elements, or evidence of elemental zoning, which could be explained by condensation processes around the grains’ parent stars. These grains must have experienced minimal processing in the interstellar medium. It is suggested that the two populations represent SiC grains whose residence times in the interstellar medium significantly differed, consistent with previous findings of noble gas and Li isotopic studies. A further study investigated carbonaceous grains isolated from the Murchison meteorite using a size and density procedure adapted for presolar graphite. No graphite grains were found and possible reasons for this are discussed. The structural and isotopic natures of thirty-three carbonaceous grains were determined by correlated, multi-instrument analyses. The grains contained solar C, N and O isotopic compositions. Deuterium was enriched in the grains with δD values up to +333 ± 110‰. These enrichments suggest exchange of H with cold interstellar gas in the outer part of the early solar nebula or interstellar medium. Raman spectroscopic and transmission electron microscopic analysis showed the grains to be composed of carbon more structurally disordered and amorphous than most carbonaceous phases observed in extra-terrestrial samples. It is argued that amorphization of the grains occurred through solar wind ion irradiation in the proto-solar nebula. This model is supported by previous studies of terrestrial soot and carbon-rich ices irradiated by H+ and He+ ion doses of ~10^15 – 10^16 ions cm-2. Implantation and mixing of H+ ions is likely to have diluted the grains’ original H isotopic composition.
- Published
- 2010
15. Pollution aerosol across Northern Europe: Assessing properties, processes and effects on regional climate
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Morgan, William Thomas, GALLAGHER, MARTIN MW, ALLAN, JAMES JD, Gallagher, Martin, Allan, James, and Coe, Hugh
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Aerosol chemical composition ,Climate change ,Regional air quality ,Ammonium nitrate ,Secondary organic aerosol - Abstract
Atmospheric aerosols are the major component in the shorter-term variability governing the radiative balance of the climate system, particularly on regional scales. However, knowledge of the myriad of properties and processes associated with aerosols is often limited, which results in major uncertainties when assessing their climate effects. One such aspect is the chemical make-up of the atmospheric aerosol burden.Airborne measurements of aerosol properties across Northern Europe are presented here in order to facilitate constraint of the properties, processes and effects of aerosols in this highly populated and industrialised region. An Aerodyne Aerosol Mass Spectrometer (AMS) delivered highly time-resolved measurements of aerosol chemical components, which included organic matter, sulphate, nitrate and ammonium.The chemical composition of the aerosol burden was strongly determined by the dominant meteorological conditions in Northern Europe. Pollution loadings in North- Western Europe were strongly enhanced when air masses originated from Continental Europe. Conversely, much cleaner conditions were associated with air masses from the Atlantic Ocean.Organic matter was found to be ubiquitous across Northern Europe and predominantly secondary in nature, which is consistent with other analyses in polluted regions of the Northern Hemisphere. Furthermore, its concentration was generally comparable to, or exceeded that of, sulphate. Significant chemical processing of the organic aerosol component was observed. Highly oxidised secondary organic aerosol dominated, as the distance from source and photochemical processing increased.Ammonium nitrate was found to be a major component of the aerosol burden in Northern Europe, with peak contributions occurring in North-Western Europe, due to the co-location of its emission precursors (NH3 and NOx) in the region. Ammonium nitrate was found to be the dominant sub-micron chemical constituent during periods associated with enhanced pollution episodes. Its concentration was shown to be modulated by the thermodynamic structure of the lower troposphere, with enhanced concentrations prevalent at the top of the boundary layer. This phenomenon greatly enhanced the radiative impact of the aerosol burden; the increased mass and water uptake by the aerosol significantly amplified the aerosol optical depth in the region.The results presented in this thesis highlight a highly dynamic region, where major changes in emissions have played a significant role in determining the chemical composition of the aerosol burden. As substantial reductions in sulphur dioxide emissions have occurred over the past two decades in Northern Europe, the relative contribution of sulphate aerosols to the regional aerosol burden has decreased. Consequently, it is more pertinent to consider the roles of organic matter and ammonium nitrate, as their influence becomes more pronounced than sulphate on regional and global climate. Air blowing in from countries in North-Western Europe strongly increases the amount of pollution over the UK. Chemical emissions from factories, cars and fertilisers in Germany, Belgium and the Netherlands form microscopic particles suspended in the air. These tiny particles build-up in the atmosphere and decrease the quality of the air we breathe. They also bounce incoming sunlight back towards space. This reduces visibility, which causes hazy days in many cities e.g. Los Angeles, Beijing and London. This process also reduces the amount of sunlight reaching the Earth’s surface, which tends to cool our climate.This study used measurements onboard a research aircraft, which flew over Northern Europe. An important finding was that carbon-containing particles were seen across the whole of Northern Europe. The more polluted periods included much greater amounts of particles which form from a combination of car and fertiliser emissions. These ammonium nitrate containing particles greatly increase the amount of sunlight bounced back to space by the pollution. This has major impacts on both regional air quality and climate.Historically, sulphate particles from power stations and industrial activities have received a lot of attention, due to concerns over acid rain. This led to cleaner emissions in Europe and their impact on the environment has now reduced. The carbon-containing and ammonium nitrate particles have received less attention. These particles should be looked at more in future for both air quality and climate concerns. Without this, future climate predictions will be more uncertain.
- Published
- 2010
16. Optimizing and Validating Systemic DNA Damage Response Profiling to Predict Neoadjuvant Chemoradiation Response in Rectal Cancer.
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Demidova EV, Czyzewicz P, Hasan A, Avkshtol V, Lesh RW, Handorf E, Devarajan K, Schultz BM, James JD, Connolly DC, Einarson MB, Baldwin D, Golemis EA, Meyer JE, and Arora S
- Abstract
Purpose: This study aimed to stratify patients with locally advanced rectal cancer (LARC) based on their response to neoadjuvant chemoradiation therapy (nCRT) using DNA damage response (DDR)-related proteins measured in peripheral blood monocytes (PBMCs). We optimized and validated an innovative assay to quantify these proteins, providing a predictive framework for nCRT response., Experimental Design: We used PBMCs collected from LARC patients either before or after standard course of ∼5.5 weeks of nCRT, with patients categorized by neoadjuvant rectal (NAR) score. DDR was assessed by immunofluorescence (γH2AX
S139 foci), and by Luminex multi-analyte platform (xMAP) assay providing semi-quantitative assessment of phosphorylated Chk1S345 , Chk2T68 , γH2AXS139 , p53S15 and total ATR, MDM2, p21. Assay performance was evaluated using reference controls and banked PBMCs from healthy controls (n=50)., Results: PBMCs from poor responders (PoR; NAR >14; n=21) had significantly lower γH2AXS139 foci than complete responders (CR; NAR <1; n=21) (p<0.0001), with no significant differences between pre- and post-nCRT samples (p=0.4961). The xMAP assay performance assessment showed linear sample curves, precision with acceptable inter- and intra-assay coefficients of variability, and high reproducibility with ∼1% outliers in replicates. Clinical associations using the xMAP assay found levels of six proteins (ATR, MDM2, Chk1S345 , Chk2T68 , γH2AXS139 , p53S15 ) significantly differentiating CRs from PoRs (p ≤ 1e-5). Univariate CART analysis determined thresholds that segregated PoRs from CRs with high precision (p<0.001)., Conclusion: We optimized an assay to assess DDR proteins in PBMCs and identified specific proteins, along with their threshold levels, that can accurately predict response to nCRT in patients with LARC., Translational Relevance: Although neoadjuvant chemoradiation therapy followed by surgery is the standard of care for patients with locally advanced rectal cancer (LARC), many patients do not benefit from this treatment and suffer from its side effects. The motivation for this study was to reliably identify patients with LARC who will or will not respond to treatment, thereby permitting more effective direction of therapy only to likely responders. In this report, we describe identification and optimization of a novel multianalyte assay for patients diagnosed with LARC. This assay uses a Luminex xMAP platform to detect DNA damage response (DDR) signaling proteins in peripheral blood monocytes of pre-treatment patients. This assay, detecting the DDR proteins, effectively segregates responders from non-responders (p ≤ 1e-5), supporting optimization of treatment efficacy and reduction of unnecessary toxicity, thus advancing personalized medicine in oncology.- Published
- 2024
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17. No role of antibiotics in patients with chest trauma requiring inter-costal drain: a pilot randomized controlled trial.
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Teyi T, James JD, Kumar V, Bagaria D, Kumar A, Choudhary N, Priyadarshini P, Gupta A, Sagar S, Mishra B, and Kumar S
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- Humans, Adolescent, Anti-Bacterial Agents therapeutic use, Pilot Projects, Empyema complications, Pneumonia, Thoracic Injuries therapy
- Abstract
Purpose: To study the role of prolonged prophylactic antibiotic therapy (PAT) in the prevention of Inter-costal drain (ICD) related infectious complications in patients with Blunt Trauma Chest (BTC)., Methods: Patients of age 15 years and above with BTC requiring ICD were included. Patients with penetrating chest injuries, associated injuries/illnesses requiring antibiotic administration, need for mechanical ventilation, known pulmonary disease or immuno-compromised status and need for open thoracotomy were excluded. 120 patients were randomized equally to two groups; no prolonged PAT group (Group A) and prolonged PAT group (group B). Both group patients received one shot of injectable antibiotic prior to ICD insertion. Primary outcome measure was comparison of ICD related infectious complications (pneumonia, empyema and SSI) and secondary outcome measures included the duration of ICD, Length of Hospital stay (LOS) and in-hospital mortality in both the groups., Results: Infectious complications (pneumonia, empyema and SSI) were seen in only one patient in antibiotic group, and none in no antibiotic group (p value = 0.500). Other complications such as post ICD pain scores, respiratory failure requiring ventilatory support, retained hemothorax or recurrent pneumothorax, did not show any statistical difference between both groups. Also, no significant difference was seen in both the groups in terms of mean duration of ICD (p value = 0.600) and LOS (p value = 0.259).m CONCLUSION: Overall prevalence of ICD related infectious complications are low in BTC patients. Definitive role of prolonged prophylactic antibiotics in reducing infectious complications and other associated co morbidities in BTC patients with ICDs could not be established., Trial Registry Details: Clinical Trial Registry, India (Trial registered at ctri.nic.in/clinical trials/login.php, number REF/2019/021704 dated 18/10/2019)., (© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany.)
- Published
- 2023
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18. Sport participation, acculturative stress, and depressive symptoms among international college students in the United States.
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Yim H, Kim ACH, Du J, and James JD
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Introduction: The distinctive social nature of sport in its capacity to promote immigrants' adaptation to the new society has been regarded as a vehicle to cope with adverse mental health outcomes derived from acculturative stress (AS) and feelings of marginalization. However, the evidence on the relationship between sport participation (SP), AS, and mental health have been lacking and fragmented. Recognizing this challenge, we examined the mediating effect of AS on the relationship between SP and depressive symptoms (DS) among international college students in the USA., Methods: A total of 203 international college students in the USA were recruited via Prolific. The instrumentation included previously validated measures: SP (SLIM-18), AS (ASSIS), DS (CES-D-10), sense of coherence (SOC-13), and demographic characteristics., Results: Mediation analysis showed a significant association between (1) SP and DS (ß = -0.030, p < 0.05) and (2) AS and DS (ß = 0.053, p < 0.001), while (3) no significant indirect effect of AS was found [ß = -0.001, SE = 0.0003, 95% CI (-0.008, 0.004)]., Discussion: Even though several previous scholars have argued that SP is an effective tool to cope with AS among international students, the present study implies this may not be applied to all international students. Specifically, AS and DS among European participants were lower than those from non-European countries, including Asia. Future studies using meta-analysis could be beneficial to examine the external validity of the previous studies on the relationship between SP, acculturation, and mental health to address this potential heterogeneity on the level of AS based on their origin countries or continents. The current study provides meaningful implications for adopting the transformative marketing perspective, which is a marketing approach that pursues positive social outcomes by promoting positive behavior of the target population., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 Yim, Kim, Du and James.)
- Published
- 2023
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19. Combination of Small Extracellular Vesicle-Derived Annexin A2 Protein and mRNA as a Potential Predictive Biomarker for Chemotherapy Responsiveness in Aggressive Triple-Negative Breast Cancer.
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Desai PP, Narra K, James JD, Jones HP, Tripathi AK, and Vishwanatha JK
- Abstract
Small extracellular vesicles (sEVs), mainly exosomes, are nanovesicles that shed from the membrane as intraluminal vesicles of the multivesicular bodies, serve as vehicles that carry cargo influential in modulating the tumor microenvironment for the multi-step process of cancer metastasis. Annexin A2 (AnxA2), a calcium(Ca
2+ )-dependent phospholipid-binding protein, is among sEV cargoes. sEV-derived AnxA2 (sEV-AnxA2) protein is involved in the process of metastasis in triple-negative breast cancer (TNBC). The objective of the current study is to determine whether sEV-AnxA2 protein and/or mRNA could be a useful biomarkers to predict the responsiveness of chemotherapy in TNBC. Removal of Immunoglobulin G (IgG) from the serum as well as using the System Bioscience's ExoQuick Ultra kit resulted in efficient sEV isolation and detection of sEV-AnxA2 protein and mRNA compared to the ultracentrifugation method. The standardized method was applied to the twenty TNBC patient sera for sEV isolation. High levels of sEV-AnxA2 protein and/or mRNA were associated with stage 3 and above in TNBC. Four patients who responded to neoadjuvant chemotherapy had high expression of AnxA2 protein and/or mRNA in sEVs, while other four who did not respond to chemotherapy had low levels of AnxA2 protein and mRNA in sEVs. Our data suggest that the sEV-AnxA2 protein and mRNA could be a combined predictive biomarker for responsiveness to chemotherapy in aggressive TNBC.- Published
- 2022
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20. A systematic review of interventions to increase physical activity and reduce sedentary behaviour following bariatric surgery.
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James JD, Hardeman W, Goodall M, Eborall H, Sprung VS, Bonnett LJ, and Wilding JPH
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- Exercise, Health Promotion methods, Humans, Bariatric Surgery, Sedentary Behavior
- Abstract
Background: Bariatric surgery promotes weight loss and improves co-morbid conditions, with patients who are more physically active having better outcomes. However, levels of physical activity and sedentary behaviour often remain unchanged following surgery., Objectives: To identify interventions and components thereof that are able to facilitate changes in physical activity and sedentary behaviour., Eligibility: Physical activity and/or sedentary behaviour must have been measured, pre and post intervention, in patients who have undergone bariatric surgery., Study Appraisal and Synthesis Methods: Four databases were searched with key-words. Two researchers conducted paper screening, data extraction and risk-of-bias assessment., Results: Twelve studies were included; eleven were randomised. Two were delivered presurgery and ten postsurgery; five found positive effect. Moderate to vigorous physical activity increased in three studies, two of which also found a significant increase in step count. The fourth found a significant increase in strenuous activity and the fifth a significant increase in metabolic equivalent of task/day and reduced time spent watching television., Limitations: Meta-analysis could not be conducted due to heterogeneity of outcomes and the tools used., Conclusion and Implications of Key Findings: This review has identified interventions and components thereof that were able to provoke positive effect. However, intervention and control conditions were not always well described particularly in terms of behaviour change techniques and the rationale for their use., Systematic Review Registration Number: PROSPERO (CRD42019121372)., (Copyright © 2021 The Authors. Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2022
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21. Diagnosis of hepatitis C infection and cascade of care in the active component, U.S. Armed Forces, 2020.
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Legg M, Seliga N, Mahaney H, Gleeson T, and Mancuso JD
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- Cross-Sectional Studies, Humans, Mass Screening, Prevalence, Hepatitis C diagnosis, Hepatitis C epidemiology, Military Personnel
- Abstract
Hepatitis C virus (HCV) infection rates are rising in the U.S. despite widely available tools to identify and effectively treat nearly all of these cases. This cross-sectional study aimed to use laboratory data to evaluate the prevalence of HCV diagnoses among active component U.S. military service members, describe the characteristics of those diagnosed with HCV, and evaluate the adherence of their care to current standards of practice. All service members in the active component U.S. military between 1 January and 31 December 2020 were included in the study population. The primary outcome was an HCV diagnosis at any time during military service, with secondary outcomes of HCV treatment and sustained virologic response (SVR). The initial case-finding algorithm used laboratory data to identify HCV patients seen in infectious disease and gastrointestinal disease clinics in military treatment facilities (MTFs) (direct care); this was supplemented with additional data to assess and correct for undercounting from cases occurring outside MTFs (purchased care). Thirty active component service members in 2020 had been diagnosed with HCV infection during their military service via direct care, or an estimate of 68 cases after correcting for additional cases from purchased care; this number represents only 12% of the expected number of infections based on previous studies. Of the 30 cases treated via direct care, 28 (93%) received HCV treatment, with 27 of those 28 (96%) achieving SVR. Changes to HCV screening policy for military accessions should be considered in order to effectively identify and treat asymptomatic HCV infections that would otherwise go undetected.
- Published
- 2022
22. Traumatic Arterio-Enteric Fistula-A Report of 2 Cases With Review of Literature.
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James JD, Agarwal H, Kumar V, Kumar A, Hemachandran N, and Gupta A
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- Adult, Arteries diagnostic imaging, Arteries surgery, Combined Modality Therapy, Endovascular Procedures, Gastrointestinal Hemorrhage etiology, Humans, Intestinal Fistula diagnostic imaging, Intestinal Fistula therapy, Male, Treatment Outcome, Vascular Fistula diagnostic imaging, Vascular Fistula therapy, Vascular Surgical Procedures, Young Adult, Arteries injuries, Buttocks blood supply, Intestinal Fistula etiology, Vascular Fistula etiology, Wounds, Gunshot complications, Wounds, Stab complications
- Abstract
Background: Traumatic arterio-enteric fistula is predominantly seen after penetrating trauma with only 21 reported cases documented in the past 25 years. They may present in an acute or delayed manner with upper or lower gastrointestinal bleed. A detailed clinical examination with requisite imaging can help in detecting such injuries., Case Description: Case 1: A 20-year-old gentleman, presented with penetrating stab injury to the gluteal region with bleeding per rectum. Imaging revealed evidence of injury to the inferior rectal artery which was found to be communicating with the extraperitoneal portion of the rectum. He was managed with a combination of endovascular and open surgery with a successful outcome. Case 2: A 29-year-old gentleman, presented in a delayed manner 2 weeks after a gunshot wound to the gluteal region, which was managed operatively in another hospital. He developed a massive lower gastrointestinal bleed 2 weeks after presentation. Imaging revealed evidence of a pseudoaneurysm of the inferior gluteal artery which had a fistulous communication with the gastrointestinal tract leading to bleeding. It was managed by endovascular techniques successfully., Conclusion: Arterio-enteric fistulas following trauma are rare phenomena and they need a high index of suspicion for diagnosis. Once diagnosed, they can be managed based on their location and patient physiology by interventional techniques, surgery, or a combination of the two.
- Published
- 2021
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23. Home- and Community-Based Provider Preparation for Pennsylvania's Managed Long-term Services and Supports.
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Degenholtz HB PhD, Bear T PhD, MPH, Cole E PhD, and James AE JD, MBA
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- Humans, Pennsylvania, State Health Plans standards, United States, Community Health Services standards, Community Participation, Managed Care Programs standards, Medicaid standards, Quality Assurance, Health Care organization & administration
- Abstract
As Pennsylvania implements its managed long-term services and supports program, we explore how home- and community-based providers are preparing for and perceiving the transition through an online survey. We summarize responses and conduct chi-square analysis to measure differences between select provider groups. Despite high levels of uncertainty about program impact, over 84% of respondents plan to participate. We found that providers in the first implementation phase had more strategic and operational discussions with MCOs than the other two phases ( p < .03). As program rollout continues, we anticipate changes in MCO-provider conversation frequency and topics based upon implementation zone.
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- 2021
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24. Acid-induced demineralisation of human enamel as a function of time and pH observed using X-ray and polarised light imaging.
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Harper RA, Shelton RM, James JD, Salvati E, Besnard C, Korsunsky AM, and Landini G
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- Dental Enamel diagnostic imaging, Humans, Hydrogen-Ion Concentration, X-Rays, Dental Caries, Tooth Demineralization chemically induced, Tooth Demineralization diagnostic imaging
- Abstract
Acid-induced enamel demineralisation affects many individuals either by exposure to acidic diets, acidic gas pollution (dental erosion) or to dental plaque acids (dental caries). This study aimed to develop in situ X-ray and light imaging methods to determine progression of enamel demineralisation and the dynamic relationship between acid pH and mineral density. Hourly digital microradiograph time-lapse sequences showed the depth of enamel demineralisation in 500 µm thick sections progressed with time from the surface towards the dentine following a power-law function, which was 21% faster than the lateral demineralisation progression after exposure for 85 h to lactic acid (10%, pH 2.2). The minimum greyscale remaining (mineral content) within the induced enamel lesion followed an exponential decay, while the accumulated total greyscale loss with time was linear, which showed a constant anisotropic mineral release within the enamel architecture. This 85 h demineralisation method studied by polarised light microscopy time-lapse sequences showed that once the demineralisation front reached the enamel Hunter-Schreger bands, there was preferential demineralisation along those bands. Mineral density loss was linear with increasing pH acidity between pH 5.2 and pH 4.0 (with 0.4 pH increments) when incubated over a 3-week period exposed to 0.5% lactic acid. At pH 4.0, there was complete mineral loss in the centre of the demineralised area after the 3-week period and the linear function intercepted the x-axis at ~ pH 5.5, near the critical pH for hydroxyapatite (HAp). These observations showed how intrinsic enamel structure and pH affected the progression of demineralisation. STATEMENT OF SIGNIFICANCE: Hydroxyapatite crystallites (HAp) in human enamel dissolve when exposed to an acidic environment but little is known about how the intrinsic structures in enamel and pH influence the demineralisation kinetics. We have developed a time-lapse in situ microradiography method to quantify microscopic anisotropic mineral loss dynamics in response to an acid-only caries model. Correlation with polarised light microscopy time-lapse sequences showed that larger structures in enamel also influence demineralisation progression as demineralisation occurred preferentially along the Hunter-Schreger bands (decussating prismatic enamel). The pH-controlled enamel mineral release in a linear manner quantifying the relationship between HAp orientation and acid solubility. These findings should direct the development of improved anti-demineralisation/ remineralisation treatments to retain/ restore the natural intrinsic enamel structure., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2020. Published by Elsevier Ltd.)
- Published
- 2021
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25. Whole Genome Methylation Analysis of Nondysplastic Barrett Esophagus that Progresses to Invasive Cancer.
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Dilworth MP, Nieto T, Stockton JD, Whalley CM, Tee L, James JD, Noble F, Underwood TJ, Hallissey MT, Hejmadi R, Trudgill N, Tucker O, and Beggs AD
- Subjects
- Adenocarcinoma pathology, Adult, Barrett Esophagus pathology, Case-Control Studies, Computational Biology, Databases, Factual, Disease Progression, Esophageal Neoplasms pathology, Female, High-Throughput Nucleotide Sequencing, Humans, Immunohistochemistry, Male, Middle Aged, Neoplasm Invasiveness, Precancerous Conditions pathology, Risk Assessment, Adenocarcinoma genetics, Barrett Esophagus genetics, Biomarkers, Tumor genetics, DNA Methylation, Esophageal Neoplasms genetics, Precancerous Conditions genetics
- Abstract
Objective: To investigate differences in methylation between patients with nondysplastic Barrett esophagus who progress to invasive adenocarcinoma and those who do not., Background: Identifying patients with nondysplastic Barrett esophagus who progress to invasive adenocarcinoma remains a challenge. Previous studies have demonstrated the potential utility of epigenetic markers for identifying this group., Methods: A whole genome methylation interrogation using the Illumina HumanMethylation 450 array of patients with nondysplastic Barrett esophagus who either develop adenocarcinoma or remain static, with validation of findings by bisulfite pyrosequencing., Results: In all, 12 patients with "progressive" versus 12 with "nonprogressive" nondysplastic Barrett esophagus were analyzed via methylation array. Forty-four methylation markers were identified that may be able to discriminate between nondysplastic Barrett esophagus that either progress to adenocarcinoma or remain static. Hypomethylation of the recently identified tumor suppressor OR3A4 (probe cg09890332) validated in a separate cohort of samples (median methylation in progressors 67.8% vs 96.7% in nonprogressors; P = 0.0001, z = 3.85, Wilcoxon rank-sum test) and was associated with the progression to adenocarcinoma. There were no differences in copy number between the 2 groups, but a global trend towards hypomethylation in the progressor group was observed., Conclusion: Hypomethylation of OR3A4 has the ability to risk stratify the patient with nondysplastic Barrett esophagus and may form the basis of a future surveillance program.
- Published
- 2019
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26. Validation of epigenetic markers to identify colitis associated cancer: Results of module 1 of the ENDCAP-C study.
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Beggs AD, Mehta S, Deeks JJ, James JD, Caldwell GM, Dilworth MP, Stockton JD, Blakeway D, Pestinger V, Vince A, Taniere P, Iqbal T, Magill L, Matthews G, and Morton DG
- Subjects
- Colonic Neoplasms genetics, Epigenesis, Genetic, Female, Humans, Male, Prospective Studies, Retrospective Studies, Sequence Analysis, DNA methods, Biomarkers, Tumor genetics, Colitis, Ulcerative complications, Colonic Neoplasms diagnosis, DNA Methylation
- Abstract
Background: Chronic inflammation caused by ulcerative colitis (UC) causes a pro-neoplastic drive in the inflamed colon, leading to a markedly greater risk of invasive malignancy compared to the general population. Despite surveillance protocols, 50% of cases proceed to cancer before neoplasia is detected. The Enhanced Neoplasia Detection and Cancer Prevention in Chronic Colitis (ENDCaP-C) trial is an observational multi-centre test accuracy study to ascertain the role of molecular markers in improving the detection of dysplasia. We aimed to validate previously identified biomarkers of neoplasia in a retrospective cohort and create predictive models for later validation in a prospective cohort., Methods: A retrospective analysis using bisulphite pyrosequencing of an 11 marker panel (SFRP1, SFRP2, SRP4, SRP5, WIF1, TUBB6, SOX7, APC1A, APC2, MINT1, RUNX3) in samples from 35 patients with cancer, 78 with dysplasia and 343 without neoplasia undergoing surveillance for UC associated neoplasia across 6 medical centres. Predictive models for UC associated cancer/dysplasia were created in the setting of neoplastic and non-neoplastic mucosa., Findings: For neoplastic mucosa a five marker panel (SFRP2, SFRP4, WIF1, APC1A, APC2) was accurate in detecting pre-cancerous and invasive neoplasia (AUC = 0.83; 95% CI: 0.79, 0.88), and dysplasia (AUC = 0.88; (0.84, 0.91). For non-neoplastic mucosa a four marker panel (APC1A, SFRP4, SFRP5, SOX7) had modest accuracy (AUC = 0.68; 95% CI: 0.62,0.73) in predicting associated bowel neoplasia through the methylation signature of distant non-neoplastic colonic mucosa., Interpretation: This multiplex methylation marker panel is accurate in the detection of ulcerative colitis associated dysplasia and neoplasia and is currently being validated in a prospective clinical trial., Funding: The ENDCAP-C study was funded by the National Institute for Health Research Efficacy and Mechanism Evaluation (EME) Programme (11/100/29)., (Copyright © 2018 The Authors. Published by Elsevier B.V. All rights reserved.)
- Published
- 2019
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27. Programmed Cell Death-Ligand 1 (PD-L1) Expression in Anal Cancer.
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Govindarajan R, Gujja S, Siegel ER, Batra A, Saeed A, Lai K, James JD, Fogel BJ, and Williamson S
- Subjects
- Adult, Aged, Aged, 80 and over, Anus Neoplasms metabolism, Anus Neoplasms therapy, Carcinoma, Squamous Cell metabolism, Carcinoma, Squamous Cell therapy, Combined Modality Therapy, Female, Follow-Up Studies, Humans, Male, Middle Aged, Neoplasm Recurrence, Local metabolism, Neoplasm Recurrence, Local therapy, Prognosis, Retrospective Studies, Survival Rate, Anus Neoplasms pathology, B7-H1 Antigen metabolism, Biomarkers, Tumor metabolism, Carcinoma, Squamous Cell pathology, Neoplasm Recurrence, Local pathology
- Abstract
Objective: To evaluate the expression of programmed cell death-ligand 1 (PD-L1) in anal cancer., Patients and Methods: In a retrospective cohort analysis, subjects with squamous cell carcinoma of the anal canal were tested for PD-L1 expression, then followed for recurrence and survival. Crude recurrence rates (CRRs), crude mortality rates (CMRs), and crude event rates (CERs) were assessed for PD-L1-dependent differences using Poisson regression. All 3 types of crude rate were expressed as the number that occurred per hundred person-years (hPY) of follow-up., Results: Samples from 41 subjects were evaluated for PD-L1 expression; 23 (56%) were positive. Subjects with PD-L1-expressing versus PD-L1-negative tumors respectively had CRRs of 30.8 versus 12.1 recurrences/hPY (P=0.082), CMRs of 16.7 versus 12.0 deaths/hPY (P=0.47), and CERs of 39.2 versus 16.9 events/hPY (P=0.069)., Conclusions: PD-L1 positivity was associated with worse CRR and CER, and marginally worse CMR. The effect on progression-free and overall survival needs to be validated in a study with a larger sample size.
- Published
- 2018
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28. Health System Creation and Integration at a Health Sciences University: A Five-Year Follow-up.
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Slade CP, Azziz R, Levin S, Caughman GB, Hefner DS, Halbur KV, Tingen MS, and James S
- Subjects
- Follow-Up Studies, Humans, Delivery of Health Care organization & administration, Universities organization & administration
- Abstract
Executive Summary: Shifting healthcare market forces and regulation have exerted near-constant pressure on U.S. academic health centers (AHCs) attempting to successfully execute their traditional tripartite mission. A governance structure and organizational alignment that works well under one set of conditions is rarely optimal when conditions change. Thus, the degree and type of alignment of an AHC's clinical, educational, and faculty practice organizations have changed regularly within the sector, typically landing near one end or the other on a continuum from fully aligned with centralized governance to largely independent with separate governance. The authors examine the case of Georgia Regents University and Health System in this context. In step with industry trends, the institution's governance structure swung from fully aligned/centralized governance in the early 1990s to essentially separate and decentralized by 2000. In 2010, the Georgia Regents University organizations achieved rapid realignment by creating a governance structure of sufficient strength and flexibility to absorb and adjust to continuing external upheaval. The hospitals, clinics, and physician-faculty practice group were combined into one integrated health system, then aligned with the university to form the state's only public AHC under aligned, but distinct, corporate and management structures. The years since reorganization have seen significant growth in patient volumes and complexity, improved service quality, and enhanced faculty physician satisfaction, while also significantly increasing economic contributions from the health system to the academic mission. This case study offers observations and lessons learned that may be useful to other higher education institutions considering reorganization.
- Published
- 2017
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29. Multiplex PCR and Next Generation Sequencing for the Non-Invasive Detection of Bladder Cancer.
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Ward DG, Baxter L, Gordon NS, Ott S, Savage RS, Beggs AD, James JD, Lickiss J, Green S, Wallis Y, Wei W, James ND, Zeegers MP, Cheng KK, Mathews GM, Patel P, Griffiths M, and Bryan RT
- Subjects
- Aged, Aged, 80 and over, Female, Humans, Male, Sensitivity and Specificity, DNA, Neoplasm genetics, DNA, Neoplasm urine, High-Throughput Nucleotide Sequencing methods, Multiplex Polymerase Chain Reaction methods, Mutation, Neoplasm Proteins genetics, Urinary Bladder Neoplasms genetics, Urinary Bladder Neoplasms urine
- Abstract
Background: Highly sensitive and specific urine-based tests to detect either primary or recurrent bladder cancer have proved elusive to date. Our ever increasing knowledge of the genomic aberrations in bladder cancer should enable the development of such tests based on urinary DNA., Methods: DNA was extracted from urine cell pellets and PCR used to amplify the regions of the TERT promoter and coding regions of FGFR3, PIK3CA, TP53, HRAS, KDM6A and RXRA which are frequently mutated in bladder cancer. The PCR products were barcoded, pooled and paired-end 2 x 250 bp sequencing performed on an Illumina MiSeq. Urinary DNA was analysed from 20 non-cancer controls, 120 primary bladder cancer patients (41 pTa, 40 pT1, 39 pT2+) and 91 bladder cancer patients post-TURBT (89 cancer-free)., Results: Despite the small quantities of DNA extracted from some urine cell pellets, 96% of the samples yielded mean read depths >500. Analysing only previously reported point mutations, TERT mutations were found in 55% of patients with bladder cancer (independent of stage), FGFR3 mutations in 30% of patients with bladder cancer, PIK3CA in 14% and TP53 mutations in 12% of patients with bladder cancer. Overall, these previously reported bladder cancer mutations were detected in 86 out of 122 bladder cancer patients (70% sensitivity) and in only 3 out of 109 patients with no detectable bladder cancer (97% specificity)., Conclusion: This simple, cost-effective approach could be used for the non-invasive surveillance of patients with non-muscle-invasive bladder cancers harbouring these mutations. The method has a low DNA input requirement and can detect low levels of mutant DNA in a large excess of normal DNA. These genes represent a minimal biomarker panel to which extra markers could be added to develop a highly sensitive diagnostic test for bladder cancer.
- Published
- 2016
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30. Mesenchymal differentiation mediated by NF-κB promotes radiation resistance in glioblastoma.
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Bhat KPL, Balasubramaniyan V, Vaillant B, Ezhilarasan R, Hummelink K, Hollingsworth F, Wani K, Heathcock L, James JD, Goodman LD, Conroy S, Long L, Lelic N, Wang S, Gumin J, Raj D, Kodama Y, Raghunathan A, Olar A, Joshi K, Pelloski CE, Heimberger A, Kim SH, Cahill DP, Rao G, Den Dunnen WFA, Boddeke HWGM, Phillips HS, Nakano I, Lang FF, Colman H, Sulman EP, and Aldape K
- Subjects
- Animals, Basic Helix-Loop-Helix Transcription Factors genetics, Basic Helix-Loop-Helix Transcription Factors metabolism, Cell Differentiation genetics, Cluster Analysis, DNA Methylation, Disease Models, Animal, Epigenesis, Genetic, Gene Expression Profiling, Gene Expression Regulation, Neoplastic, Glioblastoma mortality, Humans, Hyaluronan Receptors genetics, Hyaluronan Receptors metabolism, Mice, Nerve Tissue Proteins genetics, Nerve Tissue Proteins metabolism, Oligodendrocyte Transcription Factor 2, Prognosis, Signal Transduction, Transcriptome, Tumor Necrosis Factor-alpha pharmacology, Xenograft Model Antitumor Assays, Glioblastoma genetics, Glioblastoma metabolism, NF-kappa B genetics, NF-kappa B metabolism, Radiation Tolerance genetics
- Abstract
Despite extensive study, few therapeutic targets have been identified for glioblastoma (GBM). Here we show that patient-derived glioma sphere cultures (GSCs) that resemble either the proneural (PN) or mesenchymal (MES) transcriptomal subtypes differ significantly in their biological characteristics. Moreover, we found that a subset of the PN GSCs undergoes differentiation to a MES state in a TNF-α/NF-κB-dependent manner with an associated enrichment of CD44 subpopulations and radioresistant phenotypes. We present data to suggest that the tumor microenvironment cell types such as macrophages/microglia may play an integral role in this process. We further show that the MES signature, CD44 expression, and NF-κB activation correlate with poor radiation response and shorter survival in patients with GBM., (Copyright © 2013 Elsevier Inc. All rights reserved.)
- Published
- 2013
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31. Interests in high-functioning autism are more intense, interfering, and idiosyncratic than those in neurotypical development.
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Anthony LG, Kenworthy L, Yerys BE, Jankowski KF, James JD, Harms MB, Martin A, and Wallace GL
- Subjects
- Adolescent, Child, Executive Function, Humans, Male, Neuropsychological Tests, Psychiatric Status Rating Scales, Surveys and Questionnaires, Young Adult, Child Development Disorders, Pervasive psychology, Recreation psychology
- Abstract
Although circumscribed interests are pathognomonic with autism, much about these interests remains unknown. Using the Interests Scale (IS), this study compares interests between 76 neurotypical (NT) individuals and 109 individuals with high-functioning autism spectrum disorder (HF-ASD) matched groupwise on age, IQ, and gender ratio. Participants and their parents/caregivers completed diagnostic measures (the Autism Diagnostic Interview-Revised and the Autism Diagnostic Observation Schedule; HF-ASD only), cognitive tests (Wechsler IQ Scales), and questionnaires (the Repetitive Behavior Scale-Revised, the Behavior Rating Inventory of Executive Function, and the Social Responsiveness Scale), in addition to the IS. Consistent with previous research, HF-ASD and NT individuals did not differ in number of interest areas, but the types of interests and intensity of those interests differed considerably. Using only the IS intensity score, 81% of individuals were correctly classified (NT or HF-ASD) in a logistic regression analysis. Among individuals with HF-ASD, Interests Scale scores were significantly related to Autism Diagnostic Observation Schedule, Behavior Rating Inventory of Executive Function, Repetitive Behavior Scale-Revised, and Social Responsiveness Scale scores, but they were not related to Autism Diagnostic Interview-Revised scores, IQ, gender, age, or psychotropic medication use. The type and intensity, but not the number, of interests distinguish high-functioning individuals with ASD from NT individuals.
- Published
- 2013
- Full Text
- View/download PDF
32. The transcriptional coactivator TAZ regulates mesenchymal differentiation in malignant glioma.
- Author
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Bhat KP, Salazar KL, Balasubramaniyan V, Wani K, Heathcock L, Hollingsworth F, James JD, Gumin J, Diefes KL, Kim SH, Turski A, Azodi Y, Yang Y, Doucette T, Colman H, Sulman EP, Lang FF, Rao G, Copray S, Vaillant BD, and Aldape KD
- Subjects
- Acyltransferases, Animals, Cell Line, Tumor, Cells, Cultured, DNA-Binding Proteins metabolism, Epigenomics, Gene Expression Regulation, Neoplastic, Humans, Mesenchymal Stem Cells metabolism, Mice, Mice, Inbred C57BL, Mice, SCID, Neoplastic Stem Cells metabolism, Neoplastic Stem Cells pathology, TEA Domain Transcription Factors, Transcription Factors genetics, Tumor Cells, Cultured, Brain Neoplasms physiopathology, Glioma physiopathology, Mesenchymal Stem Cells cytology, Neoplastic Stem Cells cytology, Transcription Factors metabolism
- Abstract
Recent molecular classification of glioblastoma (GBM) has shown that patients with a mesenchymal (MES) gene expression signature exhibit poor overall survival and treatment resistance. Using regulatory network analysis of available expression microarray data sets of GBM, including The Cancer Genome Atlas (TCGA), we identified the transcriptional coactivator with PDZ-binding motif (TAZ), to be highly associated with the MES network. TAZ expression was lower in proneural (PN) GBMs and lower-grade gliomas, which correlated with CpG island hypermethylation of the TAZ promoter compared with MES GBMs. Silencing of TAZ in MES glioma stem cells (GSCs) decreased expression of MES markers, invasion, self-renewal, and tumor formation. Conversely, overexpression of TAZ in PN GSCs as well as murine neural stem cells (NSCs) induced MES marker expression and aberrant osteoblastic and chondrocytic differentiation in a TEAD-dependent fashion. Using chromatin immunoprecipitation (ChIP), we show that TAZ is directly recruited to a majority of MES gene promoters in a complex with TEAD2. The coexpression of TAZ, but not a mutated form of TAZ that lacks TEAD binding, with platelet-derived growth factor-B (PDGF-B) resulted in high-grade tumors with MES features in a murine model of glioma. Our studies uncover a direct role for TAZ and TEAD in driving the MES differentiation of malignant glioma., (© 2011 by Cold Spring Harbor Laboratory Press)
- Published
- 2011
- Full Text
- View/download PDF
33. Accuracy of visual estimation in classifying effort during a lifting task.
- Author
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Schapmire DW, St James JD, Townsend R, and Feeler L
- Subjects
- Adult, Female, Humans, Male, Middle Aged, Observer Variation, Workload, Lifting, Physical Exertion, Visual Perception, Work Capacity Evaluation
- Abstract
Objective: The objective was to determine if visual estimation of effort (VEE) during lifting tasks is accurate in classifying relative levels of exertion or distinguishing between incomplete lifts that may be potentially unsafe and incomplete lifts of "actors" feigning weakness., Participants: A convenience sample of 117 health professionals and lay subjects participated in the study., Methods: Four actors were videoed performing four complete dynamic lifts (sets of five repetitions) of varying levels of exertion (relative to subjects' physical maximum). Subjects viewed the videoed performances, presented in no apparent order, attempting to properly classify the lifting tasks. For the four levels of exertion, participants were to judge if the lifts were 25%, 50%, 75% and 100% of each actor's maximum lifting capacity and to distinguish between an incomplete (failed) lift of 110% of maximum and a feigned failure of a lift of 25% of maximum., Results: Accuracy for in classifying all lifting activities was marginally higher than chance. There were no differences in the accuracy of health professionals or lay subjects., Conclusion: The VEE does not accurately classify relative levels of exertion or distinguish between incomplete feigned effort lifts and lifts that are potentially too heavy to safely lift.
- Published
- 2011
- Full Text
- View/download PDF
34. Examining relations of entertainment with social interaction motives and team identification.
- Author
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Gau LS, Wann DL, and James JD
- Subjects
- Adolescent, Adult, Female, Humans, Individuality, Interpersonal Relations, Male, Models, Psychological, Social Perception, Young Adult, Football psychology, Leisure Activities, Motivation, Social Behavior, Social Identification
- Abstract
The goal was to investigate a potential causal pattern between the motives of sport spectators and team identification by using a cross-lagged panel design. Questionnaires were completed by 229 participants at the beginning and end of one NCAA (National Collegiate Athletic Association) college football season for 4 mo. in the USA. The questionnaire included three items for each motive (Social Interaction and Entertainment), three items measuring team identification, and demographic items. The relation of Entertainment at Time 1 to team identification at Time 2 was larger than the relation of team identification at Time 1 to Entertainment at Time 2. This suggests that the motivation of Entertainment may lead to the formation of team identification more than team identification leads to Entertainment. However, the motive of Social Interaction did not show the same pattern. As results of this study suggested some spectator sport motives might lead to identification with a team, the hypothesis that all motives would be the basis of team identification might not be correct.
- Published
- 2010
- Full Text
- View/download PDF
35. Simultaneous bilateral hand strength testing in a client population, Part II: Relationship to a distraction-based lifting evaluation.
- Author
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St James JD, Schapmire DW, Feeler L, and Kleinkort J
- Subjects
- Adolescent, Adult, Female, Humans, Male, Middle Aged, Reproducibility of Results, Young Adult, Behavior, Hand Strength, Lifting, Physical Exertion, Work Capacity Evaluation
- Abstract
Objective: To determine if passing or failing statistically-based validity criteria during a distraction-based hand strength assessment is related to test behavior during a lifting assessment., Participants: 200 consecutive clients presenting for an FCE., Methods: The two testing protocols, one involving a hand strength assessment, the other involving an assessment of lifting capacities, were administered to assess the variability between repeated measures., Results: Clients failing two or more statistically-based hand strength validity criteria had significantly more variability between repeated measures in the lifting assessment, p=0.001 and 0.014 for right and left unilateral lifts, respectively, and p<0.0005 for three different bilateral lifts., Conclusions: A pattern of performance related to the degree of variability in repeated measures protocols for these two distraction-based protocols is revealed. Passing or failing the hand strength assessment are each equally predictive of test outcome during the distraction-based lifting assessment. The failure of the validity criteria in these two distraction-based tests cannot be attributed to a history of surgery but, rather, is the result of abnormal test behavior.
- Published
- 2010
- Full Text
- View/download PDF
36. Isometric strength assessment, part I: static testing does not accurately predict dynamic lifting capacity.
- Author
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Feeler L, St James JD, and Schapmire DW
- Subjects
- Biomechanical Phenomena physiology, Female, Humans, Male, Predictive Value of Tests, Isometric Contraction physiology, Lifting, Muscle Strength physiology, Work Capacity Evaluation
- Abstract
Objective: To determine if isometric (static) strength accurately predicts dynamic lifting capacity., Participants: 107,755 male and 23,078 female prospective workers taking part in a post-offer employment test., Methods: Subjects were tested for strength three standard static lifts and attained physical maxima for four dynamic lifts., Results: The data confirms modest correlations between isometric and dynamic measures. However, the standard errors of estimate for all isometric-to-dynamic predictions make such predictions meaningless for the practical purpose for which they are most commonly used., Conclusions: The Static Leg Lift, Static Arm Lift and Static Back (Torso) Lift are not appropriate for making predictions relative to dynamic lifting capacity. Given the likely degree of error in such predictions, and in light of potential safety concerns as reported by previous investigators, employers, clinicians and risk managers now have substantial objective evidence to call such testing into question.
- Published
- 2010
- Full Text
- View/download PDF
37. Simultaneous bilateral hand strength testing in a client population, part I: diagnostic, observational and subjective complaint correlates to consistency of effort.
- Author
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Schapmire DW, St James JD, Feeler L, and Kleinkort J
- Subjects
- Behavior, Humans, Pain complications, Pain Measurement methods, Physical Exertion, Reproducibility of Results, Surveys and Questionnaires, Hand Strength, Pain psychology, Pain Measurement psychology, Work Capacity Evaluation
- Abstract
Objectives: 1. To determine if scores on pain questionnaires and overt behaviors during a functional capacity evaluation (FCE) were related to variability between repeated measures during a hand strength assessment. 2. To determine if failure of statistically-based validity criteria, as proposed by Schapmire, St. James and Townsend et al. [26] is likely to be due to pain., Participants: 200 consecutive clients presenting for an FCE., Methods: Subjects filled out pain questionnaires, were observed for various behaviors and were administered the distraction-based hand strength assessment., Results: Clients failing two or more of the statistically-based validity criteria had higher scores on most pain questionnaires, presented with a higher frequency of various pain behaviors (p < 0.05 and < 0.001, respectively), and had a lower rate of relevant surgeries (p < 0.001). There was no statistically significant difference in the number of failed validity criteria between this group of clients and for normal subjects feigning weakness in a controlled study (p> 0.05)., Conclusions: Pain does not reasonably explain the failure of the statistically-based validity criteria. The protocol is appropriate for use in a client population.
- Published
- 2010
- Full Text
- View/download PDF
38. Attention deficit/hyperactivity disorder symptoms moderate cognition and behavior in children with autism spectrum disorders.
- Author
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Yerys BE, Wallace GL, Sokoloff JL, Shook DA, James JD, and Kenworthy L
- Subjects
- Adaptation, Psychological, Adolescent, Asperger Syndrome diagnosis, Asperger Syndrome epidemiology, Asperger Syndrome psychology, Attention Deficit Disorder with Hyperactivity epidemiology, Attention Deficit Disorder with Hyperactivity psychology, Autistic Disorder diagnosis, Autistic Disorder epidemiology, Autistic Disorder psychology, Child, Child Behavior Disorders epidemiology, Child Behavior Disorders psychology, Child Development Disorders, Pervasive epidemiology, Child Development Disorders, Pervasive psychology, Cognition Disorders epidemiology, Cognition Disorders psychology, Comorbidity, Executive Function, Female, Humans, Male, Memory, Short-Term, Neuropsychological Tests statistics & numerical data, Personality Assessment, Psychometrics, Social Adjustment, Attention Deficit Disorder with Hyperactivity diagnosis, Child Behavior Disorders diagnosis, Child Development Disorders, Pervasive diagnosis, Cognition Disorders diagnosis
- Abstract
Recent estimates suggest that 31% of children with autism spectrum disorders (ASD) meet diagnostic criteria for attention deficit/hyperactivity disorder (ADHD), and another 24% of children with ASD exhibit subthreshold clinical ADHD symptoms. Presence of ADHD symptoms in the context of ASD could have a variety of effects on cognition, autistic traits, and adaptive/maladaptive behaviors including: exacerbating core ASD impairments; adding unique impairments specific to ADHD; producing new problems unreported in ASD or ADHD; having no clear impact; or producing some combination of these scenarios. Children with ASD and co-morbid ADHD symptoms (ASD+ADHD; n = 21), children with ASD without ADHD (ASD; n = 28), and a typically developing control group (n = 21) were included in the study; all groups were matched on age, gender-ratio, IQ, and socioeconomic status. Data were collected on verbal and spatial working memory, response inhibition, global executive control (EC), autistic traits, adaptive functioning, and maladaptive behavior problems. In this sample, the presence of ADHD symptoms in ASD exacerbated impairments in EC and adaptive behavior and resulted in higher autistic trait, and externalizing behavior ratings. ADHD symptoms were also associated with greater impairments on a lab measure of verbal working memory. These findings suggest that children with ASD+ADHD symptoms present with exacerbated impairments in some but not all domains of functioning relative to children with ASD, most notably in adaptive behavior and working memory. Therefore, ADHD may moderate the expression of components of the ASD cognitive and behavioral phenotype, but ASD+ADHD may not represent an etiologically distinct phenotype from ASD alone.
- Published
- 2009
- Full Text
- View/download PDF
39. Functional connectivity of the inferior frontal cortex changes with age in children with autism spectrum disorders: a fcMRI study of response inhibition.
- Author
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Lee PS, Yerys BE, Della Rosa A, Foss-Feig J, Barnes KA, James JD, VanMeter J, Vaidya CJ, Gaillard WD, and Kenworthy LE
- Subjects
- Age Factors, Analysis of Variance, Autistic Disorder physiopathology, Cerebral Cortex growth & development, Cerebral Cortex physiopathology, Child, Cognition Disorders physiopathology, Female, Frontal Lobe pathology, Frontal Lobe physiopathology, Humans, Image Processing, Computer-Assisted, Language Tests, Magnetic Resonance Imaging, Male, Nerve Net pathology, Nerve Net physiopathology, Neuropsychological Tests, Autistic Disorder pathology, Frontal Lobe growth & development
- Abstract
Unmasking the neural basis of neurodevelopmental disorders, such as autism spectrum disorders (ASD), requires studying functional connectivity during childhood when cognitive skills develop. A functional connectivity magnetic resonance imaging (fcMRI) analysis was performed on data collected during Go/NoGo task performance from 24 children ages 8-12 years (12 with ASD; 12 controls matched on age and intellectual functioning). We investigated the connectivity of the left and right inferior frontal cortex (IFC; BA 47), key regions for response inhibition, with other active regions in frontal, striatal, and parietal cortex. Groups did not differ on behavioral measures or functional connectivity of either IFC region. A trend for reduced connectivity in the right IFC for the ASD group was revealed when controlling for age. In the ASD group, there was a significant negative correlation between age and 2 right IFC correlation pairs: right IFC-bilateral presupplementary motor area (BA 6) and right IFC-right caudate. Compared with typical controls, children with ASD may not have gross differences in IFC functional connectivity during response inhibition, which contrasts with an adult study of ASD that reported reduced functional connectivity. This discrepancy suggests an atypical developmental trajectory in ASD for right IFC connectivity with other neural regions supporting response inhibition.
- Published
- 2009
- Full Text
- View/download PDF
40. Use of the three-spined stickleback (Gasterosteus aculeatus) as a sensitive in vivo test for detection of environmental antiandrogens.
- Author
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Katsiadaki I, Morris S, Squires C, Hurst MR, James JD, and Scott AP
- Subjects
- Animals, Dihydrotestosterone pharmacology, Ethinyl Estradiol pharmacology, Female, Fish Proteins analysis, Flutamide pharmacology, Kidney cytology, Kidney drug effects, Male, Methyltestosterone pharmacology, Osmolar Concentration, Seasons, Angiogenesis Inhibitors toxicity, Environmental Exposure adverse effects, Models, Animal, Smegmamorpha physiology
- Abstract
We have previously shown that exposure to exogenous androgens causes female sticklebacks (Gasterosteus aculeatus) to produce the glue protein, spiggin, in their kidneys. This protein can be quantified by an enzyme-linked immunosorbent assay developed and validated at the Centre for Environment, Fisheries and Aquaculture Science. Here we report the development of an in vivo test for the detection of environmental antiandrogens. The system involves the simultaneous exposure of female sticklebacks to 17alpha-methyltestosterone (a model androgen) at 500 ng/L and suspected environmental antiandrogens over a period of 21 days. The spiggin content of the kidneys is then measured, and any antiandrogenic activity is evaluated by comparing the spiggin levels of female fish exposed to antiandrogens to those of female fish exposed solely to the model androgen. The assay detects the antiandrogenic activity of flutamide, vinclozolin (both used at 250 microg/L), linuron (at 150 microg/L), and fenitrothion (at 15 and 150 microg/L). These results provide the first evidence of in vivo antiandrogenic activity of both linuron and fenitrothion in teleosts. Although there are other suggested fish species that could be used for this purpose, the stickleback is the only widely available species in which it is now possible to study both estrogenic and antiandrogenic end points in the same individual. Furthermore, the species is endemic and ubiquitous in Europe, and it possesses many ecological traits that make it better suited than other potential species for field research into endocrine disruption.
- Published
- 2006
- Full Text
- View/download PDF
41. Diagnostic utility of renal cell carcinoma marker in cytopathology.
- Author
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Gokden N, Mukunyadzi P, James JD, and Gokden M
- Subjects
- Antibodies, Monoclonal, Antigens, Neoplasm, Biomarkers, Tumor analysis, Biomarkers, Tumor immunology, Biopsy, Fine-Needle, Bone Neoplasms chemistry, Bone Neoplasms secondary, Carcinoma, Renal Cell chemistry, Carcinoma, Renal Cell diagnosis, Cytoplasm chemistry, Humans, Immunohistochemistry methods, Liver Neoplasms chemistry, Liver Neoplasms diagnosis, Liver Neoplasms pathology, Lung Neoplasms chemistry, Lung Neoplasms secondary, Mitogen-Activated Protein Kinases immunology, Sensitivity and Specificity, Carcinoma, Renal Cell pathology, Mitogen-Activated Protein Kinases analysis
- Abstract
Renal cell carcinoma (RCC) not uncommonly presents with metastases and causes diagnostic difficulty to the cytopathologist who is involved in the initial diagnostic workup of tumors with an unknown primary site. RCC marker (RCC Ma) recognizes a human proximal tubule antigen and was shown to have high specificity and relatively low sensitivity in preliminary studies on routinely processed tissue sections. We investigated the diagnostic usefulness of RCC Ma immunohistochemically in fine-needle aspiration (FNA) samples. A total of 34 FNA samples obtained from the following carcinomas were used: 7 RCCs, 5 metastatic RCCs, 4 hepatocellular carcinomas, 2 non-small cell carcinomas of the lung, 3 metastatic non-small cell carcinomas of the lung, 4 invasive ductal carcinomas of the breast, 2 pancreatic ductal adenocarcinomas, 4 metastatic transitional cell carcinomas of the urinary bladder, and 3 metastatic colon carcinomas. Routinely processed cell block sections of FNA specimens were stained with RCC Ma by using routine immunohistochemistry. Presence and distribution of staining were evaluated. Two of 7 (29%) primary and 2 of 5 (40%) metastatic RCCs showed immunoreactivity in less than 50% of carcinoma cells. Staining was focal, cytoplasmic, and granular. Scattered positive cells were present in two of the four hepatocellular carcinomas. All breast, lung, pancreas, colon, and transitional cell carcinomas were negative. RCC antibody has a low sensitivity (33%), most likely because of its focal staining pattern, and a high specificity (91%) in FNA specimens. Immunoreactivity in metastatic carcinoma of an unknown primary site, especially as part of a panel of antibodies, is useful in diagnostic cytopathology. RCC antibody has not been studied in hepatocellular carcinoma, and the significance of positivity observed in some of our cases is unclear.
- Published
- 2003
- Full Text
- View/download PDF
42. Simultaneous bilateral testing: validation of a new protocol to detect insincere effort during grip and pinch strength testing.
- Author
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Schapmire D, St James JD, Townsend R, Stewart T, Delheimer S, and Focht D
- Subjects
- Adolescent, Adult, Aged, Female, Humans, Male, Middle Aged, Muscle Weakness diagnosis, Patient Compliance, Reference Values, Sensitivity and Specificity, Hand Strength physiology, Malingering diagnosis
- Abstract
The detection of feigned weakness in hand grip strength assessment is difficult. The authors review several proposed methods and their weaknesses. A comparison of unilateral testing and simultaneous bilateral testing with the Jamar dynamometer and the Baseline pinch gauge is demonstrated as a solution. An experiment involved 100 asymptomatic subjects who were tested twice, once under instructions to give a full effort and once under instructions to feign weakness. Seven statistical criteria of noncompliance were chosen. Defining noncompliance as failing two or more of the seven criteria, 99% of the instructed noncompliant subjects were correctly classified as noncompliant. No subjects were incorrectly classified as noncompliant during instructed compliant testing. Twelve subjects failed on a single criterion. On retesting, all but one were correctly classified. One subject in the instructed noncompliant group passed all criteria. Accuracy was 99.5%, including retesting of the 12 "gray-zone" subjects.
- Published
- 2002
- Full Text
- View/download PDF
43. Results of a Division of Radiation Protection scrap yard exercise.
- Author
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James JD
- Subjects
- Decontamination, Emergencies, Government Agencies, Hazardous Waste, Health Physics, Humans, Occupational Exposure, Radioactive Hazard Release, Radioactive Waste, United States, Radiation Protection
- Abstract
For years the Division of Radiation Protection (DRP) has participated in exercises, which are required by the Federal Emergency Management Agency (FEMA) to demonstrate our ability to deal with an accident at a nuclear power plant. These demonstrations are defined by objectives and are structured such that they offer little opportunity to practice for real-world radiological events in the exercise. Since real-world radiological incidents do occur throughout the year, this exercise was designed to be as realistic as possible. A scrap yard incident was chosen as the most probable type of event. The exercise was conducted on May 5 and 6, 1999.
- Published
- 2001
44. Influence of competitive adsorption on flocculation and rheology of high-pressure-treated milk protein-stabilized emulsions.
- Author
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Dickinson E and James JD
- Subjects
- Adsorption, Emulsions, Pressure, Rheology, Milk Proteins chemistry
- Abstract
The effect of high-pressure treatment (HPT) on the droplet-size distribution and small-deformation rheology of oil-in-water emulsions containing beta-lactoglobulin and a nonionic surfactant or sodium caseinate has been investigated at neutral pH. Addition of Tween 20 (polyoxyethylenesorbitan monolaurate) to a beta-lactoglobulin-stabilized emulsion results in competitive displacement of the adsorbed globular protein film and, following HPT, the formation of a less flocculated emulsion. The age of the beta-lactoglobulin-stabilized emulsion prior to addition of sodium caseinate influences the competitive adsorption behavior. The strengthening of the beta-lactoglobulin layer with time makes it more resistant to disruption by sodium caseinate. The level of pressure-induced flocculation of beta-lactoglobulin-coated oil droplets depends on the intensity of processing conditions and on the degree of interfacial displacement. In contrast, beta-lactoglobulin added after emulsification appears to show little evidence of competitive adsorption behavior at the caseinate oil-water interface. Changes in the rheological properties of these latter systems following HPT can be attributed to pressure-induced denaturation and gelation of beta-lactoglobulin in the continuous phase of the emulsion.
- Published
- 1999
- Full Text
- View/download PDF
45. Comprehensive physical map of the Cydia pomonella granulovirus genome and sequence analysis of the granulin gene region.
- Author
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Crook NE, James JD, Smith IR, and Winstanley D
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Molecular Sequence Data, Occlusion Body Matrix Proteins, Sequence Alignment, Sequence Analysis, Viral Structural Proteins, Baculoviridae genetics, Chromosome Mapping, Genome, Viral, Moths virology
- Abstract
A cloned strain of Cydia pomonella granulovirus, CpGV-M1, was obtained using successive rounds of an in vivo limiting dilution method. A detailed physical map of the genome was constructed using 11 restriction enzymes. The region containing the granulin gene and an open reading frame immediately upstream of the granulin gene was sequenced. This region showed a high degree of homology to the equivalent region from Cryptophlebia leucotreta granulovirus with 98% amino acid identity for the granulins and 68% identity for the putative polypeptides encoded by the upstream ORFs. These latter polypeptides contained two zinc finger-like motifs and showed a low degree of homology to ME53 from Autographa californica nucleopolyhedrovirus (AcMNPV). Evidence is presented for a similar upstream ORF in Artogeia rapae GV also. Hybridization studies showed that the CpGV genome had a similar overall organization to the Artogeia rapae GV genome. Hybridization between CpGV and AcMNPV was limited to fragments spanning about 15% of each genome suggesting that very few genes are highly conserved between GVs and NPVs.
- Published
- 1997
- Full Text
- View/download PDF
46. Preparation and characterization of an antibody specific to the rat dopamine D2 receptor.
- Author
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Johnston JM, Wood DF, James JD, and Johnston DG
- Subjects
- Animals, Antibody Specificity, Blotting, Western, Cell Membrane metabolism, Cross Reactions, Enzyme-Linked Immunosorbent Assay, Female, Pituitary Gland metabolism, Rabbits, Rats, Receptors, Dopamine D2 metabolism, Rhizoctonia, Antibodies chemistry, Receptors, Dopamine D2 immunology
- Abstract
Antibodies specific to the dopamine D2 receptor have been raised in rabbits using synthetic peptides. The resulting antiserum was sensitive to picogram quantities of peptide as measured by enzyme-linked immunoassay and was shown to have a 33% cross-reactivity with partially purified D2 receptor protein. No detectable cross-reactivity with similarly prepared fungal membranes was observed. D2 receptor preparations from normal rat pituitary cells were used in Western blot analysis. Bands of M(r) = 95,000 and 34,000 were detected in these preparations with a third faint band at 120,000. These correspond to the pituitary D2 receptor.
- Published
- 1992
- Full Text
- View/download PDF
47. Technical considerations in manual and instrument tying techniques.
- Author
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James JD, Wu MM, Batra EK, Rodeheaver GT, and Edlich RF
- Subjects
- Nylons, Sutures, Suture Techniques instrumentation
- Abstract
The purpose of this study was to relate the two-hand (manual) and instrument tie techniques with the ultimate security of granny and square knots constructed in multifilament and monofilament nylon sutures. Instrument-tie technique constructed secure granny and square knots, which failed by breakage rather than slippage. Similarly, two-hand (manual) tie techniques constructed square knots, which achieved knot security, failing only by breakage. In contrast, knot security was not reliably achieved with granny knots constructed by the two-hand (manual) tie techniques, with the knots frequently failing by slippage.
- Published
- 1992
- Full Text
- View/download PDF
48. Observations on the microstructure of response conflict.
- Author
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St James JD
- Subjects
- Adult, Female, Humans, Male, Perceptual Masking, Attention, Conflict, Psychological, Pattern Recognition, Visual, Psychomotor Performance, Reaction Time
- Abstract
Three experiments are detailed which indicate the usefulness of the frequency of double responses (DRs) as an indicant of response conflict, in addition to the usual RT measures. DRs are responses on which an initial (often partial) error response is made that is rapidly amended to a correct response. Such responses occur most frequently in stimulus conditions where response conflict is expected by theory to be present and is indicated by changes in RT. Partial activation of competing responses has been demonstrated before using physiological measures (Coles, Gratton, Bashore, C. W. Eriksen, & Donchin, 1985; C. W. Eriksen, Coles, Morris, & O'Hara, 1985) when both responses could physically be made at the same time. DRs seem to be an equivalent type of movement when the subject cannot physically make but one movement at a time. The usefulness of this index of response conflict lies in its ease of implementation.
- Published
- 1990
- Full Text
- View/download PDF
49. Effects of tasks interpolated during rest on reminiscence for pursuit-rotor performance and inverted-alphabet printing: a test of a consolidation theory of reminiscence.
- Author
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St James JD and Day HD
- Subjects
- Adolescent, Adult, Female, Humans, Practice, Psychological, Dominance, Cerebral, Memory, Mental Recall, Motion Perception
- Abstract
As a test of a consolidation theory of reminiscence, 150 female college students practiced inverted-alphabet printing and the pursuit rotor for 5 min., rested for 20 min., and then practiced for 2 more min. During the rest period, some subjects rested while others performed reverse-cue rotary pursuit or mirror tracing. No reduction in reminiscence produced by tasks occurring during the rest period was found. While the failure to support a consolidation theory of reminiscence could not be explained, the possibility of sex differences in response to tasks occurring during the rest period was discussed.
- Published
- 1981
- Full Text
- View/download PDF
50. The Hampton project: initial census data for a community-based health communication system.
- Author
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Schuman SH, Braunstein ML, Peeples HL, James JD, Haskell EG Jr, and Curry HB
- Subjects
- Efficiency, Evaluation Studies as Topic, South Carolina, Community Health Services statistics & numerical data, Medical Record Linkage, Medical Records
- Published
- 1977
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