97 results on '"J. Schalken"'
Search Results
2. Solving self-absorption in fluorescence
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Ryan M. Trevorah, Christopher T. Chantler, and Martin J. Schalken
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fluorescence ,X-ray absorption fine structure (XAFS) ,X-ray absorption spectroscopy (XAS) ,self-absorption ,software and modelling ,Crystallography ,QD901-999 - Abstract
One of the most common types of experiment in X-ray absorption spectroscopy (XAS) measures the secondary inelastically scattered fluorescence photon. This widespread approach has a dominant systematic of self-absorption of the fluorescence photon. The large impact of self-absorption compromises accuracy, analysis and insight. Presented here is a detailed self-consistent method to correct for self-absorption and attenuation in fluorescence X-ray measurements. This method and the resulting software package can be applied to any fluorescence data, for XAS or any other experimental approach detecting fluorescence or inelastically scattered radiation, leading to a general solution applicable to a wide range of experimental investigations. The high intrinsic accuracy of the processed data allows these features to be well modelled and yields deeper potential insight.
- Published
- 2019
- Full Text
- View/download PDF
3. High-accuracy mass attenuation coefficients and X-ray absorption spectroscopy of zinc – the first X-ray Extended Range Technique-like experiment in Australia
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Chanh Q. Tran, Alexis J. Illig, Martin D. de Jonge, Christopher T. Chantler, Ruwini S. K. Ekanayake, Martin J. Schalken, Peter Kappen, Bernt Johannessen, and Daniel Sier
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Nuclear and High Energy Physics ,Radiation ,Materials science ,Scattering ,Harmonics ,Attenuation ,Absolute value ,Absorption (electromagnetic radiation) ,Australian Synchrotron ,Instrumentation ,Dark current ,Computational physics ,X-ray absorption fine structure - Abstract
The first X-ray Extended Range Technique (XERT)-like experiment at the Australian Synchrotron, Australia, is presented. In this experiment X-ray mass attenuation coefficients are measured across an energy range including the zinc K-absorption edge and X-ray absorption fine structure (XAFS). These high-accuracy measurements are recorded at 496 energies from 8.51 keV to 11.59 keV. The XERT protocol dictates that systematic errors due to dark current nonlinearities, correction for blank measurements, full-foil mapping to characterize the absolute value of attenuation, scattering, harmonics and roughness are measured over an extended range of experimental parameter space. This results in data for better analysis, culminating in measurement of mass attenuation coefficients across the zinc K-edge to 0.023–0.036% accuracy. Dark current corrections are energy- and structure-dependent and the magnitude of correction reached 57% for thicker samples but was still large and significant for thin samples. Blank measurements scaled thin foil attenuation coefficients by 60–500%; and up to 90% even for thicker foils. Full-foil mapping and characterization corrected discrepancies between foils of up to 20%, rendering the possibility of absolute measurements of attenuation. Fluorescence scattering was also a major correction. Harmonics, roughness and bandwidth were explored. The energy was calibrated using standard reference foils. These results represent the most extensive and accurate measurements of zinc which enable investigations of discrepancies between current theory and experiments. This work was almost fully automated from this first experiment at the Australian Synchrotron, greatly increasing the possibility for large-scale studies using XERT.
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- 2021
4. High-accuracy transmission and fluorescence XAFS of zinc at 10 K, 50 K, 100 K and 150 K using the hybrid technique
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Marcus W. John, Daniel Sier, Ruwini S. K. Ekanayake, Martin J. Schalken, Chanh Q. Tran, Bernt Johannessen, Martin D. de Jonge, Peter Kappen, and Christopher T. Chantler
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Nuclear and High Energy Physics ,Radiation ,Instrumentation - Abstract
The most accurate measurements of the mass attenuation coefficient for metals at low temperature for the zinc K-edge from 9.5 keV to 11.5 keV at temperatures of 10 K, 50 K, 100 K and 150 K using the hybrid technique are reported. This is the first time transition metal X-ray absorption fine structure (XAFS) has been studied using the hybrid technique and at low temperatures. This is also the first hybrid-like experiment at the Australian Synchrotron. The measured transmission and fluorescence XAFS spectra are compared and benchmarked against each other with detailed systematic analyses. A recent method for modelling self-absorption in fluorescence has been adapted and applied to a solid sample. The XAFS spectra are analysed using eFEFFIT to provide a robust measurement of the evolution of nanostructure, including such properties as net thermal expansion and mean-square relative displacement. This work investigates crystal dynamics, nanostructural evolution and the results of using the Debye and Einstein models to determine atomic positions. Accuracies achieved, when compared with the literature, exceed those achieved by both relative and differential XAFS, and represent a state-of-the-art for future structural investigations. Bond length uncertainties are of the order of 20–40 fm.
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- 2022
5. 21P Cross-resistance between platinum-based chemotherapy (PlCh) and PARP inhibitors (PARPi) in castration-resistant prostate cancer (CRPC)
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P.H.J. Slootbeek, I. Kloots, I.M. Van Oort, L. Kroeze, J. Schalken, H. Bloemendal, and N. Mehra
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Cancer Research ,Oncology - Published
- 2023
6. 1388P Interim safety analysis of nivolumab 3mg/kg and ipilimumab 1mg/kg (nivo3/ipi1) in molecular-selected patients (pts) with metastastic castration-resistant prostate cancer (mCRPC)
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S. van Wilpe, H. Westdorp, I.S.H. Kloots, P. Slootbeek, M. den Brok, G. Adema, L. Kerkmeijer, R.J. Smeenk, M. Coskunturk, H. Bloemendal, J. Schalken, N.V. Erp, W.R. Gerritsen, and N. Mehra
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Oncology ,Hematology - Published
- 2022
7. How Well do Polygenic Risk Scores Identify Men at High Risk for Prostate Cancer? Systematic Review and Meta-Analysis
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Aino Siltari, Ragnar Lönnerbro, Karl Pang, Kirill Shiranov, Alex Asiimwe, Susan Evans-Axelsson, Billy Franks, Amit Kiran, Teemu J. Murtola, Jack Schalken, Carl Steinbeisser, Anders Bjartell, Anssi Auvinen, J. N’Dow, E.J. Smith, R. Shepherd, M. Ribal, N. Mottet, L. Moris, M. Lardas, P-P. Willemse, G. Gandaglia, R. Campi, Rossella Nicoletti, M. Gacci, A. Briganti, M.M. Ratti, E. Alleva, L. Leardini, E.S. Sisca, R. Bangma, M. Roobol, S. Remmers, D. Tilki, T. Visakorpi, K. Talala, T. Tammela, M. van Hemelrijck, K. Bayer, S. Lejeune, S. Byrne, L. Fialho, P. Palaiologou B. De Meulder, C. Auffray, A. Hijazy, S. Power, N. Zounemat Kermani, K. van Bochove, M. Kalafati, M. Moinat, E. Voss, D. Horgan, L. Fullwood, M. Holtorf, D. Lancet, G. Bernstein, I. Omar, S. MacLennan, S. Maclennan, S. Tripathee, M. Wirth, M. Froehner, B. Brenner, A. Borkowetz, C. Thomas, F. Horn, K. Reiche, M. Kreux, A. Josefsson, D. Gasi Tandefekt, J. Hugosson, H. Huisman, J. Schalken, T. Hofmacher, P. Lindgren, E. Andersson, A. Fridhammar, J. Zong, J-E. Butler-Ransohoff, R. Herrera, M. Maass, P. Torremante, M.D. Voss, Z. Devecseri, T. Abbott, C. Dau, K. Papineni, R. Snijder, M. Lambrecht, R. Wolfinger, S. Rogiers, A. Servan, L. Antoni, K. Pacoe, P. Robinson, B. Jaton, D. Bakkard, H. Turunen, O. Kilkku, P. Pohjanjousi, O. Voima, L. Nevalaita, C. Reich, S. Araujo, E. Longden-Chapman, D. Burke, P. Agapow, S. Derkits, M. Licour, C. McCrea, S. Payne, A. Yong, L. Thompson, S. Le Mare, M Bussmann, and D. Kotik
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All institutes and research themes of the Radboud University Medical Center ,Oncology ,Urology ,Urological cancers Radboud Institute for Health Sciences [Radboudumc 15] ,Urological cancers Radboud Institute for Molecular Life Sciences [Radboudumc 15] - Abstract
Contains fulltext : 291547.pdf (Publisher’s version ) (Open Access) OBJECTIVES: Genome-wide association studies have revealed over 200 genetic susceptibility loci for prostate cancer (PCa). By combining them, polygenic risk scores (PRS) can be generated to predict risk of PCa. We summarize the published evidence and conduct meta-analyses of PRS as a predictor of PCa risk in Caucasian men. PATIENTS AND METHODS: Data were extracted from 59 studies, with 16 studies including 17 separate analyses used in the main meta-analysis with a total of 20,786 cases and 69,106 controls identified through a systematic search of ten databases. Random effects meta-analysis was used to obtain pooled estimates of area under the receiver-operating characteristic curve (AUC). Meta-regression was used to assess the impact of number of single-nucleotide polymorphisms (SNPs) incorporated in PRS on AUC. Heterogeneity is expressed as I(2) scores. Publication bias was evaluated using funnel plots and Egger tests. RESULTS: The ability of PRS to identify men with PCa was modest (pooled AUC 0.63, 95% CI 0.62-0.64) with moderate consistency (I(2) 64%). Combining PRS with clinical variables increased the pooled AUC to 0.74 (0.68-0.81). Meta-regression showed only negligible increase in AUC for adding incremental SNPs. Despite moderate heterogeneity, publication bias was not evident. CONCLUSION: Typically, PRS accuracy is comparable to PSA or family history with a pooled AUC value 0.63 indicating mediocre performance for PRS alone. 01 april 2023
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- 2023
8. Diagnostic performance evaluation of small RNA biomarkers in urinary EVs from prostate cancer patients
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E.S. Martens-Uzunova, N. Dits, J. Heleman, M.E. Van Royen, I. Bijnsdorp, G. Verhaegh, C. Jimenez, J. Schalken, and G. Jenster
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Urology - Published
- 2022
9. High-accuracy measurement of mass attenuation coefficients and the imaginary component of the atomic form factor of zinc from 8.51 keV to 11.59 keV, and X-ray absorption fine structure with investigation of zinc theory and nanostructure
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Alexis J. Illig, Christopher T. Chantler, Martin J. Schalken, Martin D. de Jonge, Ruwini S. K. Ekanayake, Bernt Johannessen, Daniel Sier, Chanh Q. Tran, and Peter Kappen
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Nuclear and High Energy Physics ,Radiation ,Photon ,Materials science ,Scattering ,Attenuation ,Atomic form factor ,chemistry.chemical_element ,Zinc ,X-ray absorption fine structure ,chemistry ,Atomic physics ,Spectroscopy ,Absorption (electromagnetic radiation) ,Instrumentation - Abstract
High-accuracy X-ray mass attenuation coefficients were measured from the first X-ray Extended Range Technique (XERT)-like experiment at the Australian Synchrotron. Experimentally measured mass attenuation coefficients deviate by ∼50% from the theoretical values near the zinc absorption edge, suggesting that improvements in theoretical tabulations of mass attenuation coefficients are required to bring them into better agreement with experiment. Using these values the imaginary component of the atomic form factor of zinc was determined for all the measured photon energies. The zinc K-edge jump ratio and jump factor are determined and results raise significant questions regarding the definitions of quantities used and best practice for background subtraction prior to X-ray absorption fine-structure (XAFS) analysis. The XAFS analysis shows excellent agreement between the measured and tabulated values and yields bond lengths and nanostructure of zinc with uncertainties of from 0.1% to 0.3% or 0.003 Å to 0.008 Å. Significant variation from the reported crystal structure was observed, suggesting local dynamic motion of the standard crystal lattice. XAFS is sensitive to dynamic correlated motion and in principle is capable of observing local dynamic motion beyond the reach of conventional crystallography. These results for the zinc absorption coefficient, XAFS and structure are the most accurate structural refinements of zinc at room temperature.
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- 2020
10. New Features Observed in Self-Absorption-Corrected X-ray Fluorescence Spectra for Ni Complexes with Uncertainties
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Martin J. Schalken, Christopher T. Chantler, and Ryan M. Trevorah
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X-ray absorption spectroscopy ,010304 chemical physics ,Absorption spectroscopy ,Chemistry ,Coordination number ,X-ray fluorescence ,010402 general chemistry ,01 natural sciences ,Spectral line ,0104 chemical sciences ,Computational physics ,X-ray absorption fine structure ,Bond length ,0103 physical sciences ,Physical and Theoretical Chemistry ,Absorption (electromagnetic radiation) - Abstract
We present a new technology for analyzing the molecular structure and in particular subtle conformational differences in Ni complexes using X-ray absorption spectroscopy (XAS), enabling tighter and more robust constraints of structure and dynamic bond lengths. Self-absorption and attenuating effects have a large impact in fluorescence X-ray absorption spectroscopy (XAS), compromising accuracy and insight in structural and advanced analyses. We correct for these dominant systematic effects. We investigate nickel(II) complexes, that is, bis(N-n-propyl-salicylaldiminato) nickel(II), "n-pr", and bis(N-i-propyl-salicylaldiminato) nickel(II), "i-pr", in 15 mM solutions with 0.1% w/w Ni. One is "square-planar" and one is "tetrahedral", with identical coordination numbers. We identify two key sources of uncertainty and provide robust estimates for them, reflecting the quality of the data, and provide meaningful estimates of χr2 suitable for hypothesis testing. We apply significance and model testing for fluorescence data, with direct uncertainty estimates. Two new peaks are revealed in the X-ray absorption fine structure (XAFS) at k ≈ 4.4 and 5.4 A-1. The high intrinsic accuracy of our processed data allows these features to be well modeled and yields deeper potential insight. Three important notions in the field are addressed: resolvability of shell radii, estimation of the number of independent data points in least-squares or Bayesian analysis, and the effect of uncertainties on the determined structure and the determinability of key structural parameters. Conventional XAFS fitting requires a kmin and a kmax. The origin of these limits is explained from the data, in a quantitative manner. Being able to distinguish the isomers spectroscopically and structurally places strong demands on the data, the uncertainties, and the model interpretation, and this article reports success in this subtle structural identification. Two nearby shells-the innermost two shells-are identified quantitatively, well below the conventional aliasing limit. This illustrates the application of new technology to gain new insight.
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- 2020
11. Propagation of uncertainty in experiment: structures of Ni (II) coordination complexes
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Christopher T. Chantler and Martin J. Schalken
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0301 basic medicine ,030103 biophysics ,Nuclear and High Energy Physics ,XAFS ,information content ,01 natural sciences ,03 medical and health sciences ,symbols.namesake ,Q2xafs2017 Workshop ,0103 physical sciences ,Point (geometry) ,uncertainty ,010306 general physics ,Instrumentation ,Statistical hypothesis testing ,Physics ,Propagation of uncertainty ,Radiation ,Tetrahedral molecular geometry ,Computational physics ,Fourier transform ,Experimental uncertainty analysis ,nickel coordination complexes ,Tetrahedron ,symbols ,Interpolation - Abstract
An approach to investigate XAS data without standard interpolation of experimental data and with minimal loss of information content has been developed. The additional physical insight accorded by the correct propagation of experimental uncertainty has been used to determine newly refined structures for the innermost co-ordination shell of Ni(II) coordination complexes., Accurate experimental XAFS (X-ray absorption fine-structure) data including uncertainties are required during analysis for valid comparison of results and conclusions of hypothesis testing on structural determinations. Here an approach is developed to investigate data without standard interpolation of experimental data and with minimal loss of information content in the raw data. Nickel coordination complexes bis(i-n-propylsalicylaldiminato)nickel(II) (i-pr) and bis(N-n-propylsalicylaldiminato)nickel(II) (n-pr) are investigated. The additional physical insight afforded by the correct propagation of experimental uncertainty is used to determine newly refined structures for the innermost co-ordination shell. Two sets of data are investigated for each complex; one optimized for high point accuracy and one optimized for high point density. Clearly both are important and in this investigation the quality of the physical insight from each is directly provided by measured and propagated uncertainties to fairly represent the relevant accuracies. The results provide evidence for an approximate tetrahedral geometry for the i-pr Ni complex that is more symmetric than previously concluded, with our high point accuracy data yielding ligand lengths of 2.017 ± 0.006 Å and 2.022 ∓ 0.006 Å for Ni—N and Ni—O bonds, respectively, and an even more skewed square-planar (i.e. rhombohedral) arrangement for the n-pr complex with corresponding bond lengths of 2.133 ± 0.004 Å and 1.960 ∓ 0.003 Å. The ability to distinguish using hypothesis testing between the subtle differences in XAFS spectra arising from the approximate local tetrahedral and square-planar geometries of the complexes is also highlighted. The effect of standard interpolation on experimental XAFS spectra prior to fitting with theoretical model structures is investigated. While often performed as a necessary step for Fourier transformation into position space, this will nonetheless skew the fit away from actual data taken, and fails to preserve the information content within the data uncertainty. The artificial effects that interpolation imposes on χr 2 are demonstrated. Finally, a method for interpolation is introduced which locally preserves the χr 2 and thus information content, when a regular grid is required, e.g for further analysis in r-space.
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- 2018
12. 32 Hyperthermie; het effect van hitte op de permeabiliteit van urotheelcellen
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J. Schalken, E. Oosterwijk, B.B. Rozenberg, and T.J.H. Arends
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Urology ,media_common.quotation_subject ,Art ,Humanities ,media_common - Abstract
De huidige hypothese voor de verbeterde effectiviteit van chemohyperthermie (Synergo®) is een verhoogde permeabiliteit van het urotheel door een verwarmde omgeving. Hierdoor zou er een diepere penetratie van de chemotherapie worden gerealiseerd.
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- 2014
13. An inhibition enzyme immunoassay using a human monoclonal antibody (K14) reactive with gp41 of HIV-1 for the serology of HIV-1 infections
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Jaap Goudsmit, John J. Schalken, Vera J. P. Teeuwsen, Guido van der Groen, Albert D. M. E. Osterhaus, Ruud van de Akker, and Other departments
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medicine.diagnostic_test ,Serial dilution ,medicine.drug_class ,Immunology ,Antibodies, Monoclonal ,virus diseases ,HIV Infections ,Biology ,Monoclonal antibody ,Virology ,Virus ,HIV Envelope Protein gp41 ,Serology ,Immunoenzyme Techniques ,Infectious Diseases ,Evaluation Studies as Topic ,Immunoassay ,Monoclonal ,medicine ,biology.protein ,HIV-1 ,Immunology and Allergy ,Humans ,Viral disease ,Antibody - Abstract
An inhibition enzyme immunoassay (IEIA), using a human monoclonal antibody (K14) reactive with gp41 of HIV-1, was evaluated for its applicability to the serology of HIV-1 infections. Using panels of serum samples from seronegative and confirmed HIV-1-seropositive individuals, it was shown that all the HIV-1-positive samples in a panel from The Netherlands and 97% of the HIV-1-positive samples from Tanzania were identified by this IEIA. Six per cent of the IEIA-positive samples from Tanzania could not be confirmed in other assays. Testing of serial dilutions of serum samples from African individuals with confirmed HIV-1, HIV-2 or HIV(ANI70) infections in the K14 IEIA, indicated that a HIV-1-specific assay based on this principle may be developed.
- Published
- 1991
14. [Resveratrol and newly synthetized resveratrol analogs in therapy of prostate carcinoma]
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B, Djavan, S, Marihart, F, Kuehhas, M, Rom, A, Partin, J, Schalken, and T, Sekeres
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Male ,Structure-Activity Relationship ,Cell Survival ,Resveratrol ,Stilbenes ,Humans ,Prostatic Neoplasms ,Antineoplastic Agents, Phytogenic ,Tumor Stem Cell Assay ,S Phase - Published
- 2007
15. Molecular changes associated with prostate cancer development
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E, Ruijter, R, Montironi, C, van de Kaa, and J, Schalken
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Male ,Neoplasms, Hormone-Dependent ,Prostatic Neoplasms ,Oncogenes ,DNA Methylation ,Gene Expression Regulation, Neoplastic ,Cell Transformation, Neoplastic ,Androgens ,Humans ,Genes, Tumor Suppressor ,Neoplasm Metastasis ,Vitamin D ,Telomerase ,Signal Transduction - Abstract
The epidemiologic characteristics of prostate cancer (PCa) have been recognized for several decades. It is of great importance to understand the factors responsible for prostate carcinogenesis, why some carcinomas remain "clinically silent" during life, whereas other tumors progress to present clinically and may lead to PCa-related death. A better understanding of these mechanisms in molecular genetic terms should point to more rational approaches to disease prevention, intervention and treatment. The aim of this review is to provide a comprehensive overview of the current state of knowledge regarding the molecular alterations of PCa.
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- 2001
16. Neuroendocrine cells during human prostate development: does neuroendocrine cell density remain constant during fetal as well as postnatal life?
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Y, Xue, J, van der Laak, F, Smedts, C, Schoots, A, Verhofstad, J, de la Rosette, and J, Schalken
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Adult ,Male ,Embryonic and Fetal Development ,Adolescent ,Infant, Newborn ,Prostate ,Prostatic Hyperplasia ,Humans ,Infant ,Cell Count ,Cell Differentiation ,Child ,Neurosecretory Systems - Abstract
Knowledge concerning differentiation of neuroendocrine (NE) cells during development of the human prostate is rather fragmentary. Using immunohistochemistry combined with a morphometric method, we investigated the distribution and density of NE cells in the developing human prostate, with special emphasis on the topographical relationship of NE cells with the developing gland.Consecutive sections from a total of 42 human prostates taken during autopsy of fetuses (12-38 weeks of gestation), prepubertal males, and young adults were immunostained for chromogranin A and serotonin. Computer-assisted image analysis was used to assess the total number of cells in the different parts of the branching glandular anlage, i.e., budding tips and acini/ducts. Next, the number of NE cells was counted manually. The NE cell density (NE cell index) was then determined.NE cells could first be detected in the prostate from 13 weeks of gestation. By 21 weeks of gestation, all prostates contained NE cells. NE cells were mainly confined to the acinous/ductal regions, while most of the budding tips lacked NE staining. NE cell indexes of individuals were highly variable, mostly in the youngest age group.In the normal prostate, NE cell density probably remains constant in acini/ducts from fetuses to young adulthood. The presence of neuroendocrine cells in well-developed glandular structures at such an early fetal age and their absence in the less differentiated budding tips possibly indicates that differentiation of NE cells is associated with glandular maturation. NE cells occur preferentially in the acinous/ductal region, implying a paracrine function during secretory differentiation of exocrine epithelial cells.
- Published
- 2000
17. P-Cadherin is a basal cell-specific epithelial marker that is not expressed in prostate cancer
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D F, Jarrard, R, Paul, A, van Bokhoven, S H, Nguyen, G S, Bova, M J, Wheelock, K R, Johnson, J, Schalken, M, Bussemakers, and W B, Isaacs
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Male ,Base Composition ,Binding Sites ,Reverse Transcriptase Polymerase Chain Reaction ,Sp1 Transcription Factor ,Restriction Mapping ,Prostate ,Prostatic Neoplasms ,Epithelial Cells ,Cadherins ,Immunohistochemistry ,Mice ,Tumor Cells, Cultured ,Animals ,Humans ,Promoter Regions, Genetic ,Biomarkers ,Dinucleoside Phosphates - Abstract
P-Cadherin is a member of the cadherin family of cell surface glycoproteins that mediate Ca2+-dependent cell-cell adhesion and is expressed in a differential fashion in normal epithelial tissues. The expression of P-cadherin in human prostate cancer development has not been investigated previously. By immunohistochemistry, we show that P-cadherin expression is restricted to the cell-cell border of basal epithelial cells in 30 normal prostate samples. This staining is down-regulated in prostatic intraepithelial neoplasia and is absent in all 25 of the well to poorly differentiated prostate cancer specimens analyzed. To examine potential P-cadherin-regulatory elements, we sequenced the 5'-flanking region of this gene. Similar to the mouse gene, the human P-cadherin promoter is TATA-less, contains an Sp-1 binding site and, analogous to the human E-cadherin sequence, demonstrates a GC-rich region characteristic of a CpG island. Cytosine methylation of this region occurs in P-cadherin-negative prostate cancer cell lines but not in cell lines expressing this gene. In vivo, a lack of expression in 12 clinical prostate cancer specimens is not associated with methylation of the P-cadherin promoter. These results demonstrate that the expression of the basal cell marker P-cadherin is lost in prostate cancer development and that in vivo mechanisms other than cytosine methylation regulate this consistent loss of expression.
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- 1998
18. Cell kinetics of prostate exocrine and neuroendocrine epithelium and their differential interrelationship: new perspectives
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Y, Xue, F, Smedts, A, Verhofstad, F, Debruyne, J, de la Rosette, and J, Schalken
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Adult ,Male ,Kinetics ,Exocrine Glands ,Cell Cycle ,Morphogenesis ,Prostate ,Prostatic Hyperplasia ,Animals ,Humans ,Prostatic Neoplasms ,Epithelial Cells ,Neurosecretory Systems - Abstract
The prostate gland consists of a complex ductal system lined with exocrine basal and luminal cells, and neuroendocrine epithelial cells. This paper reviews the histologic and molecular cell biologic characteristics of these cells, in normal adult tissue, during prostate morphogenesis, and in the development of benign and malignant neoplastic conditions. Expression of differentiation markers, as well as proliferation and apoptosis markers, growth factors and associated receptors, and abnormalities in genes and chromosomes are reviewed. Accumulating data indicate that (1) pluripotent immortal stem cells are located in the basal cell compartment of the prostate; (2) there is a subpopulation of epithelial cells in the prostate gland (intermediate cells) that have both structural and functional characteristics common to basal and luminal cells, which may be identified in various conditions; and prostate NE cells may have the same common origin as other exocrine cells, and share the same differentiation pathway. A stem cell model is proposed in which both exocrine and endocrine cells are derived from a subpopulation of basal cells (stem cell) that give rise to luminal cells through intermediate cells (pluripotent amplifying cells). These cells are also probably highly implicated in the early development of prostate benign and malignant neoplasia.
- Published
- 1998
19. Heterogeneous expression of E-cadherin and p53 in prostate cancer: clinical implications. BIOMED-II Markers for Prostate Cancer Study Group
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E, Ruijter, C, van de Kaa, T, Aalders, D, Ruiter, G, Miller, F, Debruyne, and J, Schalken
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Male ,Prostatectomy ,Genetic Heterogeneity ,Clinical Laboratory Techniques ,Biopsy ,Prostate ,Humans ,Prostatic Neoplasms ,Tumor Suppressor Protein p53 ,Cadherins ,Genes, p53 ,Immunohistochemistry - Abstract
Histologic grade and tumor volume are markers of malignant phenotype. More objective markers, however, have been sought for needle biopsy specimens. The aim of this study was to evaluate how immunohistochemical expression of the potential prognostic markers E-cadherin and p53 in biopsy specimens relates to the expression of these markers in prostatectomy specimens. Therefore, we analyzed 47 prostatectomy specimens and their preoperative biopsy specimens. Fixation of surgical specimens and the immunohistochemical assay for both E-cadherin and p53 expression was optimized. All paraffin blocks containing areas of carcinoma were submitted for immunohistochemical analysis. The prevalence of abnormal p53 immunoreactivity was only 11%. In addition, abnormal p53 expression was virtually restricted to cases that were already identified as having a poor prognosis on the basis of the large volume and the high grade of their carcinomas. In 28% of the cases, we found abnormal immunoreactivity for E-cadherin. These cases revealed considerable heterogeneity in topographic distribution of abnormal expression. The level of sensitivity to the detection of abnormal E-cadherin expression or abnormal p53 in the prostatectomy specimen was 15% and 60%, respectively. In view of the inherent heterogeneity of E-cadherin expression and the low prevalence of abnormal p53 expression, we question the use of these markers for prognostic purposes in needle biopsy specimens. Unless representative sampling by needle biopsy can be assured, the use of E-cadherin expression will be of most value in prostatectomy specimens.
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- 1998
20. Bracken fern-induced bladder tumors in guinea pigs. A model for human neoplasia
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P P, Bringuier, E, Piaton, N, Berger, F, Debruyne, P, Perrin, J, Schalken, and M, Devonec
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Male ,Carcinoma, Transitional Cell ,Letter ,Guinea Pigs ,Urinary Bladder ,Plants ,Immunohistochemistry ,Epithelium ,Diet ,Disease Models, Animal ,Urinary Bladder Neoplasms ,Animals ,Humans ,Keratins ,Female ,Neoplasm Invasiveness ,Follow-Up Studies ,Research Article - Abstract
We have induced tumors by feeding guinea pigs with a diet containing 25 or 30% dried bracken fern for 100 or 150 days. A high incidence of bladder tumors was obtained. All but one animal had preneoplastic or neoplastic lesions after 4 months; after one year, 24 or 25 exposed animals had carcinoma. Bladder tumors obtained were essentially pure transitional cell carcinomas, although 4 cases (7% of the exposed animals and 10% of the 39 transitional cell carcinoma observed) showed areas of focal squamous metaplasia. Immunohistological detection of cytokeratins 10, 13, and 18 confirmed the transitional nature of these tumors. Tumor development can be followed by ultrasonography and cytology. Bladder tumors arose through several steps. Dysplasia and preneoplastic hyperplasia were seen after 4 months and papillary carcinomas appeared after 6 months, whereas muscle-invasive carcinomas required 1 year. Thus this model reproduces the full spectrum of preneoplastic and neoplastic bladder lesions observed in humans. Interestingly, when tumors were induced in older guinea pigs, none of them progressed to a muscle-invasive stage. This phenomenon should provide the opportunity to study the molecular mechanisms associated with these two different growth patterns, a major issue in understanding human bladder tumor progression.
- Published
- 1995
21. 364 speaker BEYOND STAGE, PSA AND GLEASON SCORE: GENETIC PROGNOSTIC FACTORS
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J. Schalken
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Oncology ,medicine.medical_specialty ,business.industry ,Internal medicine ,Medicine ,Radiology, Nuclear Medicine and imaging ,Hematology ,Stage (cooking) ,business - Published
- 2011
22. Comparative aspects of multistep prostatic carcinogenesis in humans and rodents
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J T, Isaacs, W B, Isaacs, and J, Schalken
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Diagnosis, Differential ,Male ,Genes, ras ,Ploidies ,Animals ,Humans ,Prostatic Neoplasms ,Rodentia ,DNA, Neoplasm ,Oncogenes ,Alleles - Published
- 1992
23. Location of epitopes on the major core protein p24 of human immunodeficiency virus
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Johannes P. M. Langedijk, R. H. Meloen, J. G. Huisman, M. Tersmette, and J. J. Schalken
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Models, Molecular ,medicine.drug_class ,Protein Conformation ,viruses ,Molecular Sequence Data ,HIV Core Protein p24 ,Gene Products, gag ,Biology ,Monoclonal antibody ,Epitope ,Virus ,Epitopes ,Antigen ,Virology ,medicine ,Animals ,Humans ,Amino Acid Sequence ,Binding site ,Binding Sites ,Strain (chemistry) ,Viral Core Proteins ,virus diseases ,Molecular biology ,Polyclonal antibodies ,biology.protein ,HIV-1 ,Antibody - Abstract
Antibody-binding sites were mapped on all overlapping nonapeptides of the major core protein p24 of human immunodeficiency virus type 1 (HIV-1) using murine monoclonal antibodies (MAbs) and sheep and rabbit polyclonal antibodies raised against HIV-1/H9 (strain IIIB) viral lysate and antibodies obtained from humans infected with HIV-1. The binding sites were mapped to various distinct regions of this protein. After superimposition of the antibody-binding sites on a proposed model of p24 of HIV-1, these sites appeared to be located on the surface of the protein on loops, turns and coils of p24 but, unexpectedly, not on the major part of the predicted 'puff'. Little reaction was found with the inaccessible anti-parallel beta-barrel. These results are the first experimental evidence for the validity of the structure proposed for p24 of HIV-1.
- Published
- 1990
24. Production and characterization of a human monoclonal antibody, reactive with a conserved epitope on gp41 of human immunodeficiency virus type I
- Author
-
B. Swerdlow, F. Uytdehaag, J. J. Schalken, R. Van De Akker, Vera J. P. Teeuwsen, K. H. J. Siebelink, Jaap Goudsmit, M. J. Stukart, S. Crush-Stanton, A. D. M. E. Osterhaus, and Other departments
- Subjects
Herpesvirus 4, Human ,medicine.drug_class ,viruses ,Immunology ,Enzyme-Linked Immunosorbent Assay ,Biology ,HIV Antibodies ,Gp41 ,Monoclonal antibody ,Peripheral blood mononuclear cell ,Binding, Competitive ,Virus ,Epitope ,Epitopes ,Antigen ,Viral envelope ,Viral Envelope Proteins ,hemic and lymphatic diseases ,Virology ,medicine ,Humans ,chemistry.chemical_classification ,B-Lymphocytes ,virus diseases ,Antibodies, Monoclonal ,Cell Transformation, Viral ,Molecular biology ,Infectious Diseases ,chemistry ,HIV-1 ,Glycoprotein - Abstract
A human Epstein-Barr virus-transformed lymphoblastoid B-cell line was generated from peripheral blood mononuclear cells (PBMC) of an asymptomatic human immunodeficiency virus type I (HIV-1) seropositive donor, which produces a human monoclonal antibody K14 (IgG1), reactive with an epitope on the transmembrane part (gp41) of the envelope glycoprotein of HIV-1. This monoclonal antibody reacts with a lysate of HIV-1-infected H9 cells, gradient purified HIV-1, and a vaccinia recombinant HIV-1 gp160 protein, but not with HIV-2 antigens in an enzyme-linked immunosorbent assay (ELISA). When used as an immobilized ligand in an immune affinity column, K14 selectively purifies gp41 from a HIV-1-infected H9 cell lysate. Although no reactivity was observed in ELISA with a panel of partially overlapping synthetic nonapeptides spanning the whole length of HIV-1 gp41, it was shown to react with recombinant envelope proteins, provided that they did contain amino acids 643-692: deletion of this part resulted in the disappearance of the reactivity. Testing of an extensive panel of the sera from HIV-1 seropositive or seronegative donors from Europe and Africa, including a selected group of donors before and after HIV-1 seroconversion, in a competition ELISA with horseradish peroxidase-conjugated K14, showed that the epitope recognized on gp41 is immunodominant and conserved. K14 does not neutralize HIV-1 infectivity or virus-mediated cell fusion, and does not mediate antibody-dependent cellular cytotoxicity.
- Published
- 1990
25. 153 INVITED Biological profiling in prostate cancer
- Author
-
J. Schalken
- Subjects
Oncology ,Cancer Research ,medicine.medical_specialty ,Prostate cancer ,business.industry ,Internal medicine ,medicine ,Profiling (information science) ,medicine.disease ,business - Published
- 2007
26. 472Effect of hyperthermia on the cytotoxicity of four chemotherapeutic agents currently used for the treatment of transitional cell carcinoma of the bladder — An in vitro study
- Author
-
A. Van der Heijden, P. Moonen, G. Verhaegh, C. Jansen, J. Schalken, and J.A. Witjes
- Subjects
Urology - Published
- 2005
27. Genetic aberrations in bladder tumors detected by comparative genomic hybridization
- Author
-
S. du Manoir, Peter Lichter, J. Schalken, Christina E.M. Voorter, Stefan Joos, P. P. Bringuier, Anton H. N. Hopman, and Frans C. S. Ramaekers
- Subjects
Genetics ,Cancer Research ,Gene deletion ,Biology ,Molecular Biology ,Virtual karyotype ,Comparative genomic hybridization - Published
- 1994
28. Experimental autoimmune uveoretinitis in rats induced by rod visual pigment: Rhodopsin is more pathogenic than opsin
- Author
-
R.M. Broekhuyse, J. J. Schalken, A.H.M. van Vugt, Petra H. M. Bovee-Geurts, H.J. Winkens, and W.J. de Grip
- Subjects
Rhodopsin ,Opsin ,genetic structures ,Photoreceptor cell ,Autoimmune Diseases ,Uveitis ,Cellular and Molecular Neuroscience ,Ciliary body ,medicine ,Animals ,Photoreceptor Cells ,Eye Proteins ,Autoimmune disease ,Retina ,biology ,Retinitis ,Rod Opsins ,Uvea ,medicine.disease ,Molecular biology ,eye diseases ,Sensory Systems ,Rats ,Ophthalmology ,medicine.anatomical_structure ,Rats, Inbred Lew ,Immunology ,biology.protein ,Cattle ,Female ,sense organs ,Choroid ,Retinal Pigments - Abstract
The rod visual pigment, rhodopsin, and its illuminated form, opsin, were used to induce experimental autoimmune uveoretinitis in rats. Rhodopsin appears to be more pathogenic than opsin. A dose of 250 micrograms rhodopsin injected in Freund's complete adjuvant and pertussis adjuvant induces nongranulomatous inflammation with higher frequency, which starts earlier and is more severe than that induced by opsin. Two weeks postinjection, the mean score of rhodopsin-injected animals is more than twice as high as that of opsin-injected animals. The high pathogenicity of rhodopsin appears to be related to the biochemical integrity of the protein and depends on its state of illumination. The levels of the immune responses (both cellular and humoral) measured at day 10 postinjection do not account for the pronounced difference in pathogenicity between rhodopsin and opsin. The developmental patterns of severe uveoretinitis induced by rhodopsin or opsin were histologically evaluated and appear to be similar. In both cases we observed dense mononuclear and polymorphonuclear cell infiltrations in the retina and anterior uvea. Only in the severe stages does the choroid become involved. However, rhodopsin causes more pronounced involvement of the ciliary body, pars plana, and anterior chamber. The inflammation finally results in total elimination of the photoreceptor cell layer.
- Published
- 1988
29. Antibodies against retinal photoreceptor-specific proteins reveal axonal projections from the photosensory pineal organ in teleosts
- Author
-
Russell G. Foster, Horst-W. Korf, J. J. Schalken, and Peter Ekström
- Subjects
endocrine system ,Opsin ,Habenular nuclei ,General Neuroscience ,Retinal ,Biology ,Pinealocyte ,chemistry.chemical_compound ,medicine.anatomical_structure ,Limbic system ,nervous system ,chemistry ,Rhodopsin ,medicine ,biology.protein ,sense organs ,Pretectal area ,Neuroscience ,Subcommissural organ - Abstract
With the aid of specific antisera to the retinal proteins S-antigen and alpha-transducin and to the rhodopsin apoprotein opsin, we have labeled various cell populations in the pineal organ, parapineal organ, habenular nucleus, and subcommissural organ in two teleost species: the rainbow trout and the European minnow. Although these proteins are associated with photoreceptor functions, not only photoreceptor cells but also the majority of parenchymal cells in the pineal organ were immunoreactive. Immunoreactive cells with dendrite- and axonlike processes were observed also in the parapineal organ and the habenular nucleus. Furthermore, S-antigen-immunoreactive, long, axonal processes were observed in the pineal organ and could be traced from the pineal organ to the habenular nucleus and to the pretectal area. In the light of recent HRP electron microscopical and immunocytochemical studies we propose (1) that not only the classical pineal photoreceptor cells of poikilothermic vertebrates but also other types of CSF-contacting neurons may be the phylogenetic ancestors of mammalian pinealocytes, and (2) a close interrelationship between the pineal organ and the limbic system, effectuated by the direct projections from pineal photoreceptors/CSF-contacting neurons/pinealocytes to the habenular nucleus, and by displaced "pinealocytelike" elements scattered in the habenular nucleus.
- Published
- 1987
30. A radioimmunoassay specific for opsin
- Author
-
J. J. Schalken, R.J.C.F. Margry, W.J. de Grip, and Frans J.M. Daemen
- Subjects
Rhodopsin ,Opsin ,genetic structures ,Radioimmunoassay ,Biophysics ,Cross Reactions ,Biochemistry ,Rabbit antiserum ,Antibody Specificity ,Structural Biology ,Animals ,Eye Proteins ,Molecular Biology ,Chromatography ,biology ,Rod Opsins ,food and beverages ,Bacteriorhodopsin ,Intracellular Membranes ,Rod Cell Outer Segment ,Molecular biology ,eye diseases ,Retinal pigments ,Bovine retina ,biology.protein ,Cattle ,sense organs ,Retinal Pigments - Abstract
A radioimmunoassay is developed for bovine opsin using a rabbit antiserum against bovine rod outer segment membranes. The assay is specific for opsin. Rhodopsin, bacteriorhodopsin and hemoglobin do not show cross-reaction. It can be carried out rapidly, has a sensitivity of 0.01 pmol bovine opsin and gives accurate results, even in the presence of a large excess of rhodopsin. Under the conditions described, the assay can be used to measure bovine opsin and rhodopsin in each other's presence by running a sample before and after illumination, with a sensitivity 2000-times higher than with spectrophotometric methods. The opsin content of rather crude preparations such as bovine retina homogenates can be accurately determined. Rabbit and mouse opsin can also be assayed with a reasonable degree of accuracy using the same rabbit antiserum.
- Published
- 1983
31. Immunocytochemical evidence of molecular photoreceptor markers in cerebellar medulloblastomas
- Author
-
Horst-W. Korf, Josef Reiner, Willem J. de Grip, J. J. Schalken, Mathias Czerwionka, Igal Gery, and Walter Schachenmayr
- Subjects
Cancer Research ,Cerebellum ,Pathology ,medicine.medical_specialty ,Opsin ,genetic structures ,Retinoblastoma ,Immunocytochemistry ,Retinal ,Cerebellar Neoplasm ,Biology ,medicine.disease ,eye diseases ,Pinealocyte ,chemistry.chemical_compound ,medicine.anatomical_structure ,Oncology ,chemistry ,medicine ,sense organs ,Gangliocytoma ,neoplasms - Abstract
With the use of antisera against bovine retinal S-antigen and bovine opsin the authors demonstrate that in cerebellar medulloblastomas certain tumor cells display immunocytochemical properties characteristic of retinal photoreceptors and pinealocytes. S-antigen-like and opsin-like immunoreactions occur in nine of 28 medulloblastomas investigated. All tumors displaying S-antigen-like immunoreactive neoplastic cells also contain opsin-like immunoreactive cells; however, the opsin-like immunoreactive cells were less frequent than the S-antigen-like immunoreactive cells throughout all positive cases. The immunoreactive cells displayed several long processes. Generally, both S-antigen and opsin-like immunoreactive cells considerably vary in number among individual tumors. The results indicate that certain neoplastic cells of medulloblastoma are capable of expression of photoreceptor-specific proteins and, thus, may be closely related to tumor cells of retinoblastoma and pineocytomas previously shown to bind antisera against retinal S-antigen and opsin. No S-antigen and opsin-like immunoreaction was found in malignant teratomas and germinomas of the pineal gland, oat cell tumors, astrocytomas, ependymomas, oligodendrogliomas, glioblastomas, gangliogliomas, gangliocytoma, ganglioneuroblastomas, neuroblastomas, and esthesioneuroblastoma.
- Published
- 1987
32. A comparison of some photoreceptor characteristics in the pineal and retina
- Author
-
Adrian M. Timmers, Russell G. Foster, W.J. de Grip, and J. J. Schalken
- Subjects
endocrine system ,medicine.medical_specialty ,Opsin ,genetic structures ,Physiology ,Hamster ,Pineal Gland ,Pinealocyte ,Retinoids ,Behavioral Neuroscience ,Cricetinae ,Internal medicine ,medicine ,Animals ,Photoreceptor Cells ,Photopigment ,Eye Proteins ,Lighting ,Ecology, Evolution, Behavior and Systematics ,Retina ,Sheep ,biology ,Rod Opsins ,Adaptation, Physiological ,Immunohistochemistry ,Molecular biology ,eye diseases ,Endocrinology ,medicine.anatomical_structure ,Rhodopsin ,Retinaldehyde ,biology.protein ,Animal Science and Zoology ,sense organs ,Endocrine gland - Abstract
A rod-specific antiserum was used to immunolabel elements within the retina and pineal of the adult Djungarian hamster and Welsh Mountain sheep. In the retina immunostaining was localized to the outer segments and perikarya of photoreceptor cells, while in the pineal limited numbers of labelled pinealocytes were scattered throughout the gland. An enzyme-linked immunosorbent assay (ELISA) was then used to obtain a quantitative measure of rod opsin in total eye and pineal extracts from the Djungarian hamster. Total rod opsin (+/- SEM) in the eye was measured by absorbance spectroscopy (1.88 +/- 0.10 nmoles opsin/eye) and by using the ELISA (1.75 +/- 0.02 nmoles opsin/eye). The opsin content from a total of 56 pineals gave a mean value of 0.34 +/- 0.01 pmoles opsin/pineal. Since a functional photopigment should be coupled in a 1:1 ratio to a chromophore, we investigated whether we could identify 11-cis and/or all-trans retinaldehydes in the pineal extracts by quantitative extraction and HPLC analysis as the oximes. No evidence of 11-cis or all-trans retinaloxime could be found, the chromatograms were indistinguishable from those produced by extracts of cortical brain tissue. We conclude that the opsin present within the adult hamster pineal is not coupled to the common vertebrate retinaldehyde chromophore, and as a result, is unlikely to be part of a functional photopigment.
- Published
- 1989
33. Abstracts of papers
- Author
-
C. H. Kleinbloesem, P. van Brummelen, J. A. van de Linde, D. D. Breimer, A. L. M. Kerremans, H. J. Cremers, J. F. Rodrigues de Miranda, C. A. M. van Ginneken, F. W. J. Gribnau, M. Schols, J. Mooy, M. van Hooff, M. A. van Baak, K. H. Rahn, A. M. Soeterboek, M. van Thiel, P. Westra, G. A. Vermeer, H. H. van Rooy, I. M. Pirovano, W. Soudijn, J. J. H. M. Lohman, P. M. Hooymans, M. T. J. M. Verhey, B. F. M. Pluym, F. W. H. M. Merkus, H. H. W. Thijssen, L. G. Baars, M. J. Reijnders, J. H. T. Wagenvoort, M. W. J. A. Fieren, W. H. F. Goessens, M. F. Michel, P. M. Edelbroek, F. G. Zitman, J. N. Schreuder, H. G. M. Rooymans, F. A. de Wolff, Ch. A. Hekster, T. B. Vree, W. H. J. Jennen, F. T. J. Verstappen, J. Salemans, J. W. M. Lenders, J. Fennis, Th. Thien, H. Houben, R. A. Binkhorst, A. van 't Laar, P. P. Koopmans, P. A. M. van Hees, W. H. L. Hoefnagels, F. T. M. Huysmans, A. J. J. Woittiez, G. J. Wenting, F. H. M. Derkx, M. A. D. H. Schalekamp, G. E. M. G. Storms, J. A. Lutterman, E. de Nobel, J. M. A. Sitsen, W. de Jong, P. M. J. Stuyt, A. F. H. Stalenhoef, P. N. M. Demacker, B. Oosterhuis, R. J. M.ten Berge, N. P. Sauerwein, E. Endert, P. Th. A. Schellekens, C. J. van Boxtel, G. K. Terpstra, J. A. M. Raaijmakers, G. A. Wassink, J. Kreukniet, J. C. Bakker, A. de Vries-v. Rossen, W. K. Bleeker, J. G. R. Ufkes, R. F. van Rosevelt, J. A. van Mourik, J. A. Loos, H. G. J. Brummelhuis, J. J. Schalken, J. W. J. Lammers, A. J. Beld, and C. L. A. van Herwaarden
- Subjects
Pharmacology ,Pharmacology (medical) - Published
- 1983
34. Immunocytochemical markers revealing retinal and pineal but not hypothalamic photoreceptor systems in the Japanese quail
- Author
-
Russell G. Foster, J. J. Schalken, and Horst-Werner Korf
- Subjects
Male ,endocrine system ,medicine.medical_specialty ,Opsin ,Histology ,genetic structures ,Immunocytochemistry ,Hypothalamus ,Coturnix ,Autoantigens ,Pineal Gland ,Retina ,Pathology and Forensic Medicine ,Pinealocyte ,Immunoenzyme Techniques ,chemistry.chemical_compound ,Internal medicine ,biology.animal ,medicine ,Animals ,Photoreceptor Cells ,Transducin ,Antigens ,Eye Proteins ,Arrestin ,biology ,Immune Sera ,Rod Opsins ,Membrane Proteins ,Photoreceptor protein ,Retinal ,Cell Biology ,eye diseases ,Quail ,Cell biology ,Retinol-Binding Proteins ,Endocrinology ,medicine.anatomical_structure ,chemistry ,Organ Specificity ,sense organs ,Immunostaining - Abstract
The retinal proteins opsin, alpha-transducin, S-antigen and interstitial retinol-binding protein (IRBP) are essential for the processes of vision. By use of immunocytochemistry we have employed antibodies directed against these "photoreceptor proteins" in an attempt to identify the photoreceptor systems (retina, pineal and deep brain) of the Japanese quail. Opsin immunostaining was identified within many outer (basal portion) and inner segments of retinal photoreceptor cells and limited numbers of photoreceptor perikarya. Opsin immunostaining was also demonstrated in limited numbers of pinealocytes with all parts of these cells being immunoreactive. These results differ from previous observations. In contrast to the results obtained with the antibody against opsin, S-antigen and alpha-transducin immunostaining was seen throughout the entire outer segments and many photoreceptor perikarya of the retina, in the pineal organ immunostaining was seen in numerous pinealocytes in all follicles. These results conform to previous findings in birds. In addition, IRBP has been demonstrated for the first time in the avian retina and pineal organ. These findings underline the structural and functional similarities between the retina and pineal organ and provide additional support for a photoreceptive role of the avian pineal. No specific staining was detected in any other region of the brain in the Japanese quail; the hypothalamic photoreceptors of birds remain unidentified.
- Published
- 1987
35. Enzyme-linked immunosorbent assay for quantitative determination of the visual pigment rhodopsin in total-eye extracts
- Author
-
Willem J. de Grip and J. J. Schalken
- Subjects
Rhodopsin ,Opsin ,genetic structures ,Detergents ,Enzyme-Linked Immunosorbent Assay ,Cross Reactions ,Eye ,medicine.disease_cause ,Cross-reactivity ,Cellular and Molecular Neuroscience ,Pigment ,biology.animal ,medicine ,Animals ,Antigens ,Eye Proteins ,Monospecificity ,Antiserum ,biology ,Rod Opsins ,Rod Cell Outer Segment ,Molecular biology ,Sensory Systems ,Quail ,Ophthalmology ,Biochemistry ,Polyclonal antibodies ,visual_art ,biology.protein ,visual_art.visual_art_medium ,Cattle ,sense organs ,Retinal Pigments - Abstract
A versatile, multispecies enzyme-linked immunosorbent assay for the rod visual pigment (rhod)opsin has been developed. For this quantitative inhibition assay a monospecific polyclonal antiserum is used which is elicited in rabbits against bovine rod outer-segment membranes. Detergent concentrations as high as 1.0% can be used in the assay with only a slight loss in sensitivity. The assay allows quantitative determination of the apoprotein opsin with a detection level of about 0.04 pmol per sample by using standards prepared by illumination of spectrophotometrically determined amounts of rhodopsin. The antiserum shows considerable cross-reactivity with opsin from several species (mouse, rat, quail, monkey and man). The high degree of monospecificity and cross-reactivity of the antiserum already allowed quantitation of opsin content in crude eye extracts of mouse, rat and quail with a sensitivity comparable to that of bovine opsin. Similar types of multispecies immunoassays for quantitation of highly conserved membrane proteins can be developed using the described approach, requiring only a monospecific antiserum elicited against an easily accessible species and crude tissue extracts both for coating and as a source of the inhibitory antigen.
- Published
- 1986
36. A comparison of some photoreceptor characteristics in the pineal and retina
- Author
-
W.J. de Grip, J. J. Schalken, Adrian M. Timmers, and Russell G. Foster
- Subjects
endocrine system ,medicine.medical_specialty ,Opsin ,genetic structures ,Physiology ,Photoreceptor cell ,Pinealocyte ,Behavioral Neuroscience ,chemistry.chemical_compound ,Internal medicine ,biology.animal ,medicine ,Ecology, Evolution, Behavior and Systematics ,Retina ,biology ,Retinal ,Molecular biology ,eye diseases ,Quail ,medicine.anatomical_structure ,Endocrinology ,chemistry ,Rhodopsin ,Retinaldehyde ,biology.protein ,Animal Science and Zoology ,sense organs - Abstract
Immunocytochemistry with a rod-specific antiserum was used to study the post-hatch development (2 days–300 days) of photoreceptor elements within the pineal of the Japanese quail. At all ages staining was restricted to limited numbers of pinealocytes scattered throughout the gland. An enzyme-linked immunosorbent assay (ELISA), with the same rod-specific antibody, was then used to obtain a quantitative measure of rod opsin in total eye and pineal extracts in both the developing retina and pineal. The opsin content of both tissues shows a marked increase during the first 30 days after hatch and then plateaued to 0.84±0.02 nmoles opsin in the eye and 2.20±0.11 pmoles opsin equivalents in the pineal. The increase in opsin in the retina may be associated with continued post-hatch development of the photoreceptors. We then attempted to demonstrate the presence of the rhodopsin chromophore within pineal and retinal extracts using HPLC analysis. In both retinal and pineal extracts, 11-cis retinaldehyde was identified and a light-induced shift from the 11-cis to the all-trans isomer was clearly shown. This analysis also allowed us to calculate the total content of 11-cis and all-trans retinaldehyde (derived from both rod and non-rod photoreceptors) of the eye and pineal (eye: 1.7±0.2 nmoles; pineal: 4.6±0.5 pmoles). In the quail eye, the total amount of retinaldehyde is more than twice the amount of rod-like opsin. This probably reflects the large contribution of cones in the quail retina; the cone pigments will contribute to the retinaldehyde content but are not recognized by the rodspecific antibodies. In the pineal, we also found more than double the concentration of retinaldehyde than we would have predicted from the amount of rod-like opsin. These results, coupled with our immunocytochemical findings, suggest that the quail pineal contains at least two classes of photoreceptor, some ‘rod-like’, others ‘non rod-like’.
- Published
- 1989
37. Immunoassay of rod visual pigment (opsin) in the eyes of rds mutant mice lacking receptor outer segments
- Author
-
Willem J. de Grip, J. J. Schalken, Richard K. Hawkins, S. Sanyal, and J.J.M. Janssen
- Subjects
Retinal degeneration ,Opsin ,genetic structures ,Mutant ,Biophysics ,Enzyme-Linked Immunosorbent Assay ,Biology ,medicine.disease_cause ,Biochemistry ,Cyclic nucleotide ,chemistry.chemical_compound ,Mice ,medicine ,Animals ,Photoreceptor Cells ,Eye Proteins ,Molecular Biology ,Genetics ,Retina ,Mutation ,Mice, Inbred BALB C ,Retinal Degeneration ,Rod Opsins ,Retinal ,medicine.disease ,Rod Cell Outer Segment ,Molecular biology ,eye diseases ,Mice, Mutant Strains ,medicine.anatomical_structure ,chemistry ,Rhodopsin ,biology.protein ,sense organs - Abstract
In 020/A mice, homozygous for the retinal degeneration slow (rds) gene, the photoreceptor cells fail to develop outer segments, and in the absorption spectra of retinal extracts the rhodopsin peak is lacking. Application of an enzyme-linked immunoassay using antisera against bovine opsin shows, however, that opsin is present in the homozygous mutant retina (0.010 nmol/eye) at 3% of the level of the normal retina (0.38) nmol/eye) of Balb/c mice. In the retina of heterozygous mice the opsin level (0.19 nmol/eye) is about half of the normal. Detection of opsin in the rds mutant retina demonstrates the functional basis for the reported electroretinographic response and light-mediated reduction in cyclic nucleotide levels in this mutant.
- Published
- 1985
38. Rhodopsin-induced experimental autoimmune uveoretinitis in monkeys
- Author
-
H.J. Winkens, R.M. Broekhuyse, A.H.M. van Vugt, J. J. Schalken, and W.J. de Grip
- Subjects
Opsin ,Cellular immunity ,Rhodopsin ,genetic structures ,Retinitis ,Biology ,Lymphocyte Activation ,Autoimmune Diseases ,Cellular and Molecular Neuroscience ,Ciliary body ,medicine ,Animals ,Autoimmune disease ,Retina ,Chorioretinitis ,medicine.disease ,Molecular biology ,Uveitis, Anterior ,Sensory Systems ,eye diseases ,Ophthalmology ,medicine.anatomical_structure ,Immunology ,Antibody Formation ,biology.protein ,Macaca ,Female ,sense organs ,Retinal Pigments ,Research Article - Abstract
We present the first evidence that purified rhodopsin can induce experimental autoimmune uveoretinitis (EAU) in monkeys. Injection of a highly purified lipid-free rhodopsin preparation provokes severe chorioretinitis with concomitant anterior uveitis. The onset of disease is earlier, its frequency is higher, and the inflammation is considerably more severe than in EAU induced under similar conditions by opsin. The first inflammatory cells are observed in the ciliary body and pars plana. Within a few days the inflammation extends into the anterior chamber, choroid, and retina. Retinitis predominates in the central area, while chorioretinitis is observed in the periphery, both accompanied by damage to and elimination of the photoreceptor cells. The monkeys develop high cellular and humoral immune responses against rhodopsin and opsin. The cellular response maximum just precedes the onset of EAU. This may indicate that cellular immunity has an important role in the pathogenesis of rhodopsin-induced EAU.
- Published
- 1989
39. Antibodies against retinal photoreceptor-specific proteins reveal axonal projections from the photosensory pineal organ in teleosts
- Author
-
P, Ekström, R G, Foster, H W, Korf, and J J, Schalken
- Subjects
Arrestin ,Trout ,Fishes ,Rod Opsins ,Membrane Proteins ,Immunohistochemistry ,Pineal Gland ,Synaptic Transmission ,Antibodies ,Axons ,Retina ,Animals ,Photoreceptor Cells ,Transducin ,Antigens ,Eye Proteins - Abstract
With the aid of specific antisera to the retinal proteins S-antigen and alpha-transducin and to the rhodopsin apoprotein opsin, we have labeled various cell populations in the pineal organ, parapineal organ, habenular nucleus, and subcommissural organ in two teleost species: the rainbow trout and the European minnow. Although these proteins are associated with photoreceptor functions, not only photoreceptor cells but also the majority of parenchymal cells in the pineal organ were immunoreactive. Immunoreactive cells with dendrite- and axonlike processes were observed also in the parapineal organ and the habenular nucleus. Furthermore, S-antigen-immunoreactive, long, axonal processes were observed in the pineal organ and could be traced from the pineal organ to the habenular nucleus and to the pretectal area. In the light of recent HRP electron microscopical and immunocytochemical studies we propose (1) that not only the classical pineal photoreceptor cells of poikilothermic vertebrates but also other types of CSF-contacting neurons may be the phylogenetic ancestors of mammalian pinealocytes, and (2) a close interrelationship between the pineal organ and the limbic system, effectuated by the direct projections from pineal photoreceptors/CSF-contacting neurons/pinealocytes to the habenular nucleus, and by displaced "pinealocytelike" elements scattered in the habenular nucleus.
- Published
- 1987
40. Opsin-like immunoreaction in the retinae and pineal organs of four mammalian species
- Author
-
Russell G. Foster, J. J. Schalken, Peter Ekström, and Horst W. Korf
- Subjects
endocrine system ,Opsin ,medicine.medical_specialty ,Histology ,genetic structures ,Guinea Pigs ,Pineal Gland ,Retina ,Pathology and Forensic Medicine ,Pinealocyte ,Guinea pig ,Immunoenzyme Techniques ,Mice ,Species Specificity ,Internal medicine ,medicine ,Animals ,Photopigment ,Eye Proteins ,biology ,Immune Sera ,Rod Opsins ,Cell Biology ,Molecular biology ,eye diseases ,Rats ,medicine.anatomical_structure ,Endocrinology ,nervous system ,Rhodopsin ,biology.protein ,Immunohistochemistry ,sense organs ,Rabbits ,Retinal Pigments ,Immunostaining - Abstract
Opsin-like immunoreactivity was observed in the retinae and pineal organs of the mouse, rat and guinea pig, and the pineal organ of the cat. In the retina the immunoreaction was restricted to photoreceptor cells, which displayed immunostaining in their perikarya and outer and inner segments. Distinct pinealocytes endowed with characteristic processes were labelled in the pineal organs of the mouse and cat. However, in the cat the number of immunoreactive pinealocytes was very limited. In the pineal organs of the rat and guinea pig immunoreaction was very weak and diffuse. No immunoreaction was observed when the antibody was preabsorbed with purified bovine (rhod)opsin. These findings are in accord with the results of previous studies indicating molecular similarities between retinal photoreceptors and pinealocytes in mammals.
- Published
- 1985
41. Immunocytochemical evidence of molecular photoreceptor markers in cerebellar medulloblastomas
- Author
-
H W, Korf, M, Czerwionka, J, Reiner, W, Schachenmayr, J J, Schalken, W, de Grip, and I, Gery
- Subjects
Male ,S100 Proteins ,Rod Opsins ,Humans ,Female ,Photoreceptor Cells ,Cerebellar Neoplasms ,Eye Proteins ,Immunohistochemistry ,Retinal Pigments ,Medulloblastoma - Abstract
With the use of antisera against bovine retinal S-antigen and bovine opsin the authors demonstrate that in cerebellar medulloblastomas certain tumor cells display immunocytochemical properties characteristic of retinal photoreceptors and pinealocytes. S-antigen-like and opsin-like immunoreactions occur in nine of 28 medulloblastomas investigated. All tumors displaying S-antigen-like immunoreactive neoplastic cells also contain opsin-like immunoreactive cells; however, the opsin-like immunoreactive cells were less frequent than the S-antigen-like immunoreactive cells throughout all positive cases. The immunoreactive cells displayed several long processes. Generally, both S-antigen and opsin-like immunoreactive cells considerably vary in number among individual tumors. The results indicate that certain neoplastic cells of medulloblastoma are capable of expression of photoreceptor-specific proteins and, thus, may be closely related to tumor cells of retinoblastoma and pineocytomas previously shown to bind antisera against retinal S-antigen and opsin. No S-antigen and opsin-like immunoreaction was found in malignant teratomas and germinomas of the pineal gland, oat cell tumors, astrocytomas, ependymomas, oligodendrogliomas, glioblastomas, gangliogliomas, gangliocytoma, ganglioneuroblastomas, neuroblastomas, and esthesioneuroblastoma.
- Published
- 1987
42. Rhodopsin-induced experimental autoimmune uveoretinitis: dose-dependent clinicopathological features
- Author
-
Petra H. M. Bovee-Geurts, R.M. Broekhuyse, H.J. Winkens, A.H.M. van Vugt, J. J. Schalken, and W.J. de Grip
- Subjects
medicine.medical_specialty ,Opsin ,Pathology ,Rhodopsin ,Time Factors ,genetic structures ,medicine.medical_treatment ,Dose-Response Relationship, Immunologic ,Retinitis ,Inflammation ,Autoimmune Diseases ,Uveitis ,Cellular and Molecular Neuroscience ,Immune system ,Internal medicine ,medicine ,Animals ,Eye Proteins ,Autoimmune disease ,biology ,Chorioretinitis ,Rod Opsins ,medicine.disease ,eye diseases ,Sensory Systems ,Rats ,Ophthalmology ,Endocrinology ,Rats, Inbred Lew ,biology.protein ,Female ,sense organs ,medicine.symptom ,Adjuvant ,Retinal Pigments - Abstract
We have studied the clinicopathological features of experimental autoimmune uveoretinitis (EAU) induced in Lewis rats by injection of different doses of rhodopsin and its illuminated form opsin. Rhodopsin consistently appears to be more pathogenic than opsin. Injected in Freund's complete adjuvant and pertussis adjuvant 50 micrograms of rhodopsin induces a frequency of severe EAU similar to 250 micrograms of opsin. Intensity, frequency and location of ocular inflammation are markedly dose dependent. At high dose (100-250 micrograms), rhodopsin induces severe bilateral uveoretinitis in all animals, which starts with acute inflammation of the anterior eye segment at day 10-12 followed by chorioretinitis (predominantly retinitis) which results in complete elimination of the photoreceptor cells. At low dose (20 micrograms), rhodopsin induces mild transient inflammation in 60% of the animals, mainly consisting of mild posterior retinitis which starts at day 20 and leads to a typical multiple focal destruction of the photoreceptor cells. Intermediate doses cause an intermediate type of disease. Omission of pertussis adjuvant lowers the frequency of severe disease at low doses of rhodopsin, delays its onset and changes its features. The last characteristic has been observed in particular at intermediate doses (50-100 micrograms). In these cases, EAU usually starts by cell infiltration of the vitreous, while the anterior segment is only mildly affected. Without pertussis adjuvant the pathogenicity of opsin is low. Even in both adjuvants severe EAU can only be evoked by a high dose of opsin. Although there exists a marked difference in uveitogenicity between rhodopsin and opsin, the immunogenicity is similar and seems not to be correlated with their pathogenicity.
- Published
- 1988
43. An enzyme-labeled immunoabsorbent assay (Elisa) for rhodopsinoids, comparison with radioimmunoassay
- Author
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Frans J.M. Daemen, W.J. de Grip, C.N. Verrijp, and J. J. Schalken
- Subjects
chemistry.chemical_classification ,Ophthalmology ,Chromatography ,Enzyme ,chemistry ,Radioimmunoassay ,Sensory Systems - Published
- 1984
44. High-accuracy transmission and fluorescence XAFS of zinc at 10 K, 50 K, 100 K and 150 K using the hybrid technique
- Author
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Marcus W. John, Daniel Sier, Ruwini S. K. Ekanayake, Martin J. Schalken, Chanh Q. Tran, Bernt Johannessen, Martin D. de Jonge, Peter Kappen, and Christopher T. Chantler
- Subjects
xafs ,hybrid technique ,transmission and fluorescence ,zinc ,thermal evolution ,Nuclear and particle physics. Atomic energy. Radioactivity ,QC770-798 ,Crystallography ,QD901-999 - Abstract
The most accurate measurements of the mass attenuation coefficient for metals at low temperature for the zinc K-edge from 9.5 keV to 11.5 keV at temperatures of 10 K, 50 K, 100 K and 150 K using the hybrid technique are reported. This is the first time transition metal X-ray absorption fine structure (XAFS) has been studied using the hybrid technique and at low temperatures. This is also the first hybrid-like experiment at the Australian Synchrotron. The measured transmission and fluorescence XAFS spectra are compared and benchmarked against each other with detailed systematic analyses. A recent method for modelling self-absorption in fluorescence has been adapted and applied to a solid sample. The XAFS spectra are analysed using eFEFFIT to provide a robust measurement of the evolution of nanostructure, including such properties as net thermal expansion and mean-square relative displacement. This work investigates crystal dynamics, nanostructural evolution and the results of using the Debye and Einstein models to determine atomic positions. Accuracies achieved, when compared with the literature, exceed those achieved by both relative and differential XAFS, and represent a state-of-the-art for future structural investigations. Bond length uncertainties are of the order of 20–40 fm.
- Published
- 2023
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45. Ipilimumab with nivolumab in molecularly selected patients with castration-resistant prostate cancer: primary analysis of the phase II INSPIRE trial.
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van Wilpe S, Kloots ISH, Slootbeek PHJ, den Brok M, Westdorp H, Franken MD, Coskunturk M, Osinga T, Bloemendal H, Adema G, Smeenk RJ, Nagarajah J, van Ipenburg J, Kroeze LI, Ligtenberg MJL, Schalken J, Gerritsen WR, and Mehra N
- Abstract
Background: Metastatic castration-resistant prostate cancer (mCRPC) typically exhibits resistance to immune checkpoint inhibitors (ICIs). However, a subset of mCRPC patients displays a more immunogenic profile. This study examines efficacy and safety of dual ICI therapy in molecularly selected mCRPC., Patients and Methods: This single-arm, phase II trial included 69 molecularly selected mCRPC patients with mismatch repair deficiency (dMMR), non-synonymous tumour mutational burden ≥7.1 muts/Mb (hTMB), a BRCA2 mutation (BRCAm), or biallelic CDK12 inactivation (CDK12i). Efficacy was assessed in ICI-naïve patients (cohort A) with RECIST 1.1 (A1) and Prostate Cancer Working Group 3 (A2) measurable disease. Safety was evaluated in cohorts A and B (prior ICI monotherapy). Treatment included nivolumab 3 mg/kg and ipilimumab 1 mg/kg every 3 weeks for four cycles, followed by nivolumab 480 mg every 4 weeks for up to 1 year. The primary endpoint was disease control rate beyond 6 months (DCR > 6), aiming to surpass a DCR > 6 of 22%., Results: Patients initiated treatment between January 2021 and February 2024. Cohort A included 65 patients. Of these, 21 had dMMR (32%), 8 had hTMB (12%), 20 had BRCAm (31%), and 16 had CDK12i (25%). DCR > 6 was achieved in 38% of patients [95% confidence interval (CI) 27% to 51%], and was highest in dMMR (81%), followed by hTMB (25%), CDK12i (19%), and BRCAm (15%). Objective response rate in cohort A was 38% (95% CI 22% to 55%) and 47% (95% CI 34% to 60%) exhibited a 50% decline in prostate-specific antigen levels. Median progression-free survival (PFS) was 4.0 months (95% CI 3.5-12.0 months) in cohort A, and 32.7 months (95% CI 21.8 months-not reached) in dMMR patients. Treatment-related adverse events (TRAEs) led to permanent discontinuation in 14 of 69 patients (20%). Grade ≥3 TRAEs occurred in 48% of patients, with diarrhoea and elevated transaminases each in 10%. There was one treatment-related death due to a bowel perforation and a second following euthanasia after grade 4 toxicity., Conclusions: This trial of dual ICIs in molecularly selected mCRPC met its primary endpoint, showing DCR > 6 in 38% of patients. Dual ICIs exhibited modest responses in the hTMB, BRCAm, and CDK12i subgroups, but demonstrated exceptional efficacy in dMMR., (Copyright © 2024 The Author(s). Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2024
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46. How Well do Polygenic Risk Scores Identify Men at High Risk for Prostate Cancer? Systematic Review and Meta-Analysis.
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Siltari A, Lönnerbro R, Pang K, Shiranov K, Asiimwe A, Evans-Axelsson S, Franks B, Kiran A, Murtola TJ, Schalken J, Steinbeisser C, Bjartell A, and Auvinen A
- Subjects
- Male, Humans, Genetic Predisposition to Disease, Risk Factors, Polymorphism, Single Nucleotide, Genome-Wide Association Study, Prostatic Neoplasms genetics
- Abstract
Objectives: Genome-wide association studies have revealed over 200 genetic susceptibility loci for prostate cancer (PCa). By combining them, polygenic risk scores (PRS) can be generated to predict risk of PCa. We summarize the published evidence and conduct meta-analyses of PRS as a predictor of PCa risk in Caucasian men., Patients and Methods: Data were extracted from 59 studies, with 16 studies including 17 separate analyses used in the main meta-analysis with a total of 20,786 cases and 69,106 controls identified through a systematic search of ten databases. Random effects meta-analysis was used to obtain pooled estimates of area under the receiver-operating characteristic curve (AUC). Meta-regression was used to assess the impact of number of single-nucleotide polymorphisms (SNPs) incorporated in PRS on AUC. Heterogeneity is expressed as I
2 scores. Publication bias was evaluated using funnel plots and Egger tests., Results: The ability of PRS to identify men with PCa was modest (pooled AUC 0.63, 95% CI 0.62-0.64) with moderate consistency (I2 64%). Combining PRS with clinical variables increased the pooled AUC to 0.74 (0.68-0.81). Meta-regression showed only negligible increase in AUC for adding incremental SNPs. Despite moderate heterogeneity, publication bias was not evident., Conclusion: Typically, PRS accuracy is comparable to PSA or family history with a pooled AUC value 0.63 indicating mediocre performance for PRS alone., Competing Interests: Declaration of interests The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: Anssi Auvinen: Lecture fee (Amgen/Janssen), Amit Kiran is salaried by Astellas who have a product for prostate cancer, Teemu J Murtola: Consultant fees from Astellas, Janssen, speaker's honorarium from Astellas, Janssen and Sanofi, participation in scientific meetings at the expense of Ferring, Pfizer and Sanofi, stockholder for Arocell ab. All other authors declare no conflict of interest., (Copyright © 2022. Published by Elsevier Inc.)- Published
- 2023
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47. Liquid Biopsy for Prostate and Bladder Cancer: Progress and Pitfalls.
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Groen L and Schalken J
- Subjects
- Biomarkers, Tumor genetics, DNA, Humans, Liquid Biopsy, Male, Prostate pathology, RNA, Prostatic Neoplasms pathology, Urinary Bladder Neoplasms pathology
- Abstract
Urinary liquid biopsy (LB) tests have contributed to reducing overtreatment and improving the detection of bladder and prostate cancer. Circulating tumor cells, DNA, and RNA are the focus of next-generation blood-based LB tests. These tests aim to stratify risk according to the detection of resistance and recurrence markers in patients with metastatic disease. The costs, lack of standardization, reimbursement challenges, and specialized workflows associated with characterization of blood-derived biomarkers are the primary barriers to their clinical implementation. This review provides an overview of the successes and pitfalls of LB-based tests for bladder and prostate cancer. PATIENT SUMMARY: Urinary and blood-based liquid biopsy tests are minimally invasive and highly efficacious in detecting clinically significant cancer., (Copyright © 2022 The Authors. Published by Elsevier B.V. All rights reserved.)
- Published
- 2022
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48. Whole Blood Transcriptome Profiling Identifies DNA Replication and Cell Cycle Regulation as Early Marker of Response to Anti-PD-1 in Patients with Urothelial Cancer.
- Author
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van Wilpe S, Wosika V, Ciarloni L, Hosseinian Ehrensberger S, Jeitziner R, Angelino P, Duiveman-de Boer T, Koornstra RHT, de Vries IJM, Gerritsen WR, Schalken J, and Mehra N
- Abstract
Although immune checkpoint inhibitors improve median overall survival in patients with metastatic urothelial cancer (mUC), only a minority of patients benefit from it. Early blood-based response biomarkers may provide a reliable way to assess response weeks before imaging is available, enabling an early switch to other therapies. We conducted an exploratory study aimed at the identification of early markers of response to anti-PD-1 in patients with mUC. Whole blood RNA sequencing and phenotyping of peripheral blood mononuclear cells were performed on samples of 26 patients obtained before and after 2 to 6 weeks of anti-PD-1. Between baseline and on-treatment samples of patients with clinical benefit, 51 differentially expressed genes (DEGs) were identified, of which 37 were upregulated during treatment. Among the upregulated genes was PDCD1 , the gene encoding PD-1. STRING network analysis revealed a cluster of five interconnected DEGs which were all involved in DNA replication or cell cycle regulation. We hypothesized that the upregulation of DNA replication/cell cycle genes is a result of T cell proliferation and we were able to detect an increase in Ki-67
+ CD8+ T cells in patients with clinical benefit (median increase: 1.65%, range -0.63 to 7.06%, p = 0.012). In patients without clinical benefit, no DEGs were identified and no increase in Ki-67+ CD8+ T cells was observed. In conclusion, whole blood transcriptome profiling identified early changes in DNA replication and cell cycle regulation genes as markers of clinical benefit to anti-PD-1 in patients with urothelial cancer. Although promising, our findings require further validation before implementation in the clinic.- Published
- 2021
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49. Validation of a 2-gene mRNA urine test for the detection of ≥GG2 prostate cancer in an opportunistic screening population.
- Author
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Rubio-Briones J, Borque-Fernando A, Esteban LM, Mascarós JM, Ramírez-Backhaus M, Casanova J, Collado A, Mir C, Gómez-Ferrer A, Wong A, Aragón F, Calatrava A, López-Guerrero JA, Groskopf J, Schalken J, Van Criekinge W, and Domínguez-Escrig J
- Subjects
- Aged, Antigens, Neoplasm urine, Early Detection of Cancer, Humans, Male, Middle Aged, Neoplasm Grading, Prostatic Neoplasms genetics, Prostatic Neoplasms pathology, RNA, Messenger biosynthesis, RNA, Messenger genetics, Randomized Controlled Trials as Topic, Reproducibility of Results, Prostatic Neoplasms urine, RNA, Messenger urine
- Abstract
Background: A 2-gene urine-based molecular test that targets messenger RNAs known to be overexpressed in aggressive prostate cancer (PCa) has been described as a helpful method for detecting clinically significant prostate cancer (grade group [GG] ≥2). We performed an external validation of this test in men undergoing initial prostate biopsy (Bx) within a Spanish opportunistic screening scenario., Methods: We analyzed archived samples from 492 men who underwent prostate Bx in an opportunistic screening scenario, with prostate-specific antigen (PSA) 3 to 10 ng/mL and/or suspicious digital rectal exploration (DRE) and without previous multi-parametric magnetic resonance imaging (mpMRI). Urinary biomarker measurements were combined with clinical risk factors to determine a risk score, and accuracy for GG ≥ 2 PCa detection was compared with PCA3, European randomized screening in prostate cancer (ERSPC), and prostate biopsy collaborative group (PBCG) risk calculators in a validation workup that included calibration, discrimination, and clinical utility analysis., Results: In our cohort, the detection rates for GG1 and GG ≥ 2 PCa were 20.3% and 14.0%, respectively. The median PSA level was 3.9 ng/mL and 13.4% of subjects had suspicious DRE findings. The median risk score for men with GG ≥ 2 PCa was 21 (interquartile range: 14-28), significantly higher than benign+GG1 PCa (10, 6-18), P < .001, achieving the highest area under the curve among the models tested, 0.749 (95% confidence interval: 0.690-0.807). The urine test was well-calibrated, while ERSPC showed a slight underestimation and PBCG a slight overestimation of risk. Assuming a GG2 non-detection rate of 11% without using mpMRI, use of the urinary biomarker-based clinical model could have helped avoid 37.2% of excess biopsies while delaying the diagnosis of eight patients (1.6% of the entire cohort) with GG ≥ 2 PCa., Conclusions: In this first evaluation in an opportunistic screening population, the urinary biomarker-based test improved the detection of clinically significant PCa. Facing men with elevated PSA and/or suspicious DRE, it could be a useful tool to help avoid excess initial Bx and to identify patients most likely to benefit from Bx., (© 2020 Wiley Periodicals, Inc.)
- Published
- 2020
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50. A four-group urine risk classifier for predicting outcomes in patients with prostate cancer.
- Author
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Connell SP, Yazbek-Hanna M, McCarthy F, Hurst R, Webb M, Curley H, Walker H, Mills R, Ball RY, Sanda MG, Pellegrini KL, Patil D, Perry AS, Schalken J, Pandha H, Whitaker H, Dennis N, Stuttle C, Mills IG, Guldvik I, Parker C, Brewer DS, Cooper CS, and Clark J
- Abstract
Objectives: To develop a risk classifier using urine-derived extracellular vesicle (EV)-RNA capable of providing diagnostic information on disease status prior to biopsy, and prognostic information for men on active surveillance (AS)., Patients and Methods: Post-digital rectal examination urine-derived EV-RNA expression profiles (n = 535, multiple centres) were interrogated with a curated NanoString panel. A LASSO-based continuation ratio model was built to generate four prostate urine risk (PUR) signatures for predicting the probability of normal tissue (PUR-1), D'Amico low-risk (PUR-2), intermediate-risk (PUR-3), and high-risk (PUR-4) prostate cancer. This model was applied to a test cohort (n = 177) for diagnostic evaluation, and to an AS sub-cohort (n = 87) for prognostic evaluation., Results: Each PUR signature was significantly associated with its corresponding clinical category (P < 0.001). PUR-4 status predicted the presence of clinically significant intermediate- or high-risk disease (area under the curve = 0.77, 95% confidence interval [CI] 0.70-0.84). Application of PUR provided a net benefit over current clinical practice. In an AS sub-cohort (n = 87), groups defined by PUR status and proportion of PUR-4 had a significant association with time to progression (interquartile range hazard ratio [HR] 2.86, 95% CI 1.83-4.47; P < 0.001). PUR-4, when used continuously, dichotomized patient groups with differential progression rates of 10% and 60% 5 years after urine collection (HR 8.23, 95% CI 3.26-20.81; P < 0.001)., Conclusion: Urine-derived EV-RNA can provide diagnostic information on aggressive prostate cancer prior to biopsy, and prognostic information for men on AS. PUR represents a new and versatile biomarker that could result in substantial alterations to current treatment of patients with prostate cancer., (© 2019 The Authors BJU International Published by John Wiley & Sons Ltd on behalf of BJU International.)
- Published
- 2019
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