40 results on '"J. Paul Simons"'
Search Results
2. Pharmacological removal of serum amyloid P component from intracerebral plaques and cerebrovascular Aβ amyloid deposits in vivo
- Author
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Raya Al-Shawi, Glenys A. Tennent, David J. Millar, Angela Richard-Londt, Sebastian Brandner, David J. Werring, J. Paul Simons, and Mark B. Pepys
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alzheimer's disease ,aβ amyloid ,serum amyloid p component ,cerebral amyloid angiopathy ,cphpc ,Biology (General) ,QH301-705.5 - Abstract
Human amyloid deposits always contain the normal plasma protein serum amyloid P component (SAP), owing to its avid but reversible binding to all amyloid fibrils, including the amyloid β (Aβ) fibrils in the cerebral parenchyma plaques and cerebrovascular amyloid deposits of Alzheimer's disease (AD) and cerebral amyloid angiopathy (CAA). SAP promotes amyloid fibril formation in vitro, contributes to persistence of amyloid in vivo and is also itself directly toxic to cerebral neurons. We therefore developed (R)-1-[6-[(R)-2-carboxy-pyrrolidin-1-yl]-6-oxo-hexanoyl]pyrrolidine-2-carboxylic acid (CPHPC), a drug that removes SAP from the blood, and thereby also from the cerebrospinal fluid (CSF), in patients with AD. Here we report that, after introduction of transgenic human SAP expression in the TASTPM double transgenic mouse model of AD, all the amyloid deposits contained human SAP. Depletion of circulating human SAP by CPHPC administration in these mice removed all detectable human SAP from both the intracerebral and cerebrovascular amyloid. The demonstration that removal of SAP from the blood and CSF also removes it from these amyloid deposits crucially validates the strategy of the forthcoming ‘Depletion of serum amyloid P component in Alzheimer's disease (DESPIAD)’ clinical trial of CPHPC. The results also strongly support clinical testing of CPHPC in patients with CAA.
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- 2016
- Full Text
- View/download PDF
3. Targeted In Situ Gene Correction of Dysfunctional APOE Alleles to Produce Atheroprotective Plasma ApoE3 Protein
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Ioannis Papaioannou, J. Paul Simons, and James S. Owen
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Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Cardiovascular disease is the leading worldwide cause of death. Apolipoprotein E (ApoE) is a 34-kDa circulating glycoprotein, secreted by the liver and macrophages with pleiotropic antiatherogenic functions and hence a candidate to treat hypercholesterolaemia and atherosclerosis. Here, we describe atheroprotective properties of ApoE, though also potential proatherogenic actions, and the prevalence of dysfunctional isoforms, outline conventional gene transfer strategies, and then focus on gene correction therapeutics that can repair defective APOE alleles. In particular, we discuss the possibility and potential benefit of applying in combination two technical advances to repair aberrant APOE genes: (i) an engineered endonuclease to introduce a double-strand break (DSB) in exon 4, which contains the common, but dysfunctional, ε2 and ε4 alleles; (ii) an efficient and selectable template for homologous recombination (HR) repair, namely, an adeno-associated viral (AAV) vector, which harbours wild-type APOE sequence. This technology is applicable ex vivo, for example to target haematopoietic or induced pluripotent stem cells, and also for in vivo hepatic gene targeting. It is to be hoped that such emerging technology will eventually translate to patient therapy to reduce CVD risk.
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- 2012
- Full Text
- View/download PDF
4. Novel defect in phosphatidylinositol 4‐kinase type 2‐alpha (PI4K2A) at the membrane‐enzyme interface is associated with metabolic cutis laxa
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Mark G. Waugh, Alexander Hoischen, Zsolt Urban, Eva Morava, J. Paul Simons, Lock Hock Ngu, Hans Spelbrink, Hanka Venselaar, Ron A. Wevers, Sanne van Kraaij, Bert Callewaert, Ulrich Brandt, Thatjana Gardeitchik, Raya Al-Shawi, Miski Mohamed, Daisy Dalloyaux, Shanti Balasubramaniam, Johannes M. F. G. Aerts, Michele Frison, Sergio Guerrero-Castillo, and Wouter W. Kallemeijn
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GLUCOCEREBROSIDASE ,Glycosylation ,lnfectious Diseases and Global Health Radboud Institute for Molecular Life Sciences [Radboudumc 4] ,cutis laxa ,Phosphatidylinositols ,Extracellular matrix ,chemistry.chemical_compound ,Mice ,Medicine and Health Sciences ,Missense mutation ,neurocutaneous disorder ,Genetics(clinical) ,Child ,Genetics (clinical) ,Skin ,Mice, Knockout ,Kinase ,Chemistry ,Metabolic disorder ,choreoathetosis ,Homozygote ,Metabolic Disorders Radboud Institute for Molecular Life Sciences [Radboudumc 6] ,Disorders of movement Donders Center for Medical Neuroscience [Radboudumc 3] ,Cell biology ,PI4K2A ,Pedigree ,Phosphotransferases (Alcohol Group Acceptor) ,PTDINS(4)P ,Original Article ,Female ,movement disorder ,Mutation, Missense ,Minor Histocompatibility Antigens ,All institutes and research themes of the Radboud University Medical Center ,Genetics ,medicine ,inborn error of metabolism ,Animals ,Humans ,TRAFFICKING ,Phosphatidylinositol ,Amino Acid Sequence ,phosphatidyl inositol ,MUTATIONS ,neurometabolism ,Original Articles ,medicine.disease ,Renal disorders Radboud Institute for Molecular Life Sciences [Radboudumc 11] ,Inborn error of metabolism ,Nanomedicine Radboud Institute for Molecular Life Sciences [Radboudumc 19] ,Cutis laxa - Abstract
Inherited cutis laxa, or inelastic, sagging skin is a genetic condition of premature and generalised connective tissue ageing, affecting various elastic components of the extracellular matrix. Several cutis laxa syndromes are inborn errors of metabolism and lead to severe neurological symptoms. In a patient with cutis laxa, a choreoathetoid movement disorder, dysmorphic features and intellectual disability we performed exome sequencing to elucidate the underlying genetic defect. We identified the amino acid substitution R275W in phosphatidylinositol 4‐kinase type IIα, caused by a homozygous missense mutation in the PI4K2A gene. We used lipidomics, complexome profiling and functional studies to measure phosphatidylinositol 4‐phosphate synthesis in the patient and evaluated PI4K2A deficient mice to define a novel metabolic disorder. The R275W residue, located on the surface of the protein, is involved in forming electrostatic interactions with the membrane. The catalytic activity of PI4K2A in patient fibroblasts was severely reduced and lipid mass spectrometry showed that particular acyl‐chain pools of PI4P and PI(4,5)P2 were decreased. Phosphoinositide lipids play a major role in intracellular signalling and trafficking and regulate the balance between proliferation and apoptosis. Phosphatidylinositol 4‐kinases such as PI4K2A mediate the first step in the main metabolic pathway that generates PI4P, PI(4,5)P2 and PI(3,4,5)P3. Although neurologic involvement is common, cutis laxa has not been reported previously in metabolic defects affecting signalling. Here we describe a patient with a complex neurological phenotype, premature ageing and a mutation in PI4K2A, illustrating the importance of this enzyme in the generation of inositol lipids with particular acylation characteristics.
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- 2020
5. The effects of short-term JNK inhibition on the survival and growth of aged sympathetic neurons
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Isa Guha, Michal Golos, Raya Al-Shawi, Arthur Clegg, J. Paul Simons, Soyon Chun, Christopher Thrasivoulou, and Ivana Slamova
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Male ,0301 basic medicine ,Aging ,medicine.medical_specialty ,Sympathetic nervous system ,Programmed cell death ,Sympathetic Nervous System ,Neurite ,Cell Survival ,Cell Growth Process ,Cell Growth Processes ,Normal aging ,Rats, Sprague-Dawley ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,Nerve Growth Factor ,Neurites ,medicine ,Animals ,Molecular Targeted Therapy ,Protein Precursors ,Cells, Cultured ,Neurons ,Cell Death ,business.industry ,Kinase ,General Neuroscience ,JNK Mitogen-Activated Protein Kinases ,Neurotoxicity ,Neurodegenerative Diseases ,medicine.disease ,Neoplasm Proteins ,Mice, Inbred C57BL ,030104 developmental biology ,Endocrinology ,Nerve growth factor ,medicine.anatomical_structure ,nervous system ,Neurology (clinical) ,Geriatrics and Gerontology ,business ,030217 neurology & neurosurgery ,Developmental Biology - Abstract
During the course of normal aging, certain populations of nerve growth factor (NGF)-responsive neurons become selectively vulnerable to cell death. Studies using dissociated neurons isolated from neonates have shown that c-Jun N-terminal kinases (JNKs) are important in regulating the survival and neurite outgrowth of NGF-responsive sympathetic neurons. Unlike neonatal neurons, adult sympathetic neurons are not dependent on NGF for their survival. Moreover, the NGF precursor, proNGF, is neurotoxic for aging but not young adult NGF-responsive neurons. Because of these age-related differences, the effects of JNK inhibition on the survival and growth of sympathetic neurons isolated from aged mice were studied. Aged neurons, as well as glia, were found to be dependent on JNK for their growth but not their survival. Conversely, proNGF neurotoxicity was JNK-dependent and mediated by the p75-interacting protein NRAGE, whereas neurite outgrowth was independent of NRAGE. These results have implications for the potential use of JNK inhibitors as therapies for ameliorating age-related neurodegenerative disease.
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- 2016
6. Systemic Exosomal Delivery of shRNA Minicircles Prevents Parkinsonian Pathology
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Yiqi Seow, Alejandro Reinares-Sebastian, J. Paul Simons, J. Mark Cooper, Raya Al-Shawi, Riccardo Porcari, Vittorio Bellotti, Martin Schleef, Marco Schmeer, Chris Gardiner, Lydia Alvarez-Erviti, Javier Blesa, Raquel Forcen, María de Toro, Stephan Ellmerich, and María Izco
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Male ,Small interfering RNA ,Parkinson's disease ,Genetic enhancement ,Mice, Transgenic ,Disease ,Exosomes ,Small hairpin RNA ,03 medical and health sciences ,chemistry.chemical_compound ,Mice ,0302 clinical medicine ,Drug Delivery Systems ,Drug Discovery ,Genetics ,medicine ,Animals ,Humans ,RNA, Small Interfering ,Molecular Biology ,030304 developmental biology ,Pharmacology ,Alpha-synuclein ,0303 health sciences ,Gene knockdown ,Mice, Inbred C3H ,business.industry ,Parkinsonism ,Brain ,Parkinson Disease ,Genetic Therapy ,medicine.disease ,nervous system diseases ,Mice, Inbred C57BL ,Disease Models, Animal ,chemistry ,Gene Expression Regulation ,030220 oncology & carcinogenesis ,Cancer research ,alpha-Synuclein ,Molecular Medicine ,Original Article ,business - Abstract
The development of new therapies to slow down or halt the progression of Parkinson's disease is a health care priority. A key pathological feature is the presence of alpha-synuclein aggregates, and there is increasing evidence that alpha-synuclein propagation plays a central role in disease progression. Consequently, the downregulation of alpha-synuclein is a potential therapeutic target. As a chronic disease, the ideal treatment will be minimally invasive and effective in the long-term. Knockdown of gene expression has clear potential, and siRNAs specific to alpha-synuclein have been designed; however, the efficacy of siRNA treatment is limited by its short-term efficacy. To combat this, we designed shRNA minicircles (shRNA-MCs), with the potential for prolonged effectiveness, and used RVG-exosomes as the vehicle for specific delivery into the brain. We optimized this system using transgenic mice expressing GFP and demonstrated its ability to downregulate GFP protein expression in the brain for up to 6 weeks. RVG-exosomes were used to deliver anti-alpha-synuclein shRNA-MC therapy to the alpha-synuclein preformed-fibril-induced model of parkinsonism. This therapy decreased alpha-synuclein aggregation, reduced the loss of dopaminergic neurons, and improved the clinical symptoms. Our results confirm the therapeutic potential of shRNA-MCs delivered by RVG-exosomes for long-term treatment of neurodegenerative diseases.
- Published
- 2018
7. [P4–130]: β‐AMYLOID SYNAPTOTOXICITY DRIVES β‐AMYLOID PRODUCTION
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Joshua G. Jackson, J. Paul Simons, Katherine J. Sellers, Nigel M. Hooper, Christina Elliott, Raya Al-Shawi, Anshua Ghosh, Simon Lovestone, Michael K. Harte, Deepak Srivastava, and Richard Killick
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Psychiatry and Mental health ,Cellular and Molecular Neuroscience ,Developmental Neuroscience ,Epidemiology ,Chemistry ,β amyloid ,Health Policy ,Neurology (clinical) ,Geriatrics and Gerontology ,Cell biology - Published
- 2017
8. Pathogenetic mechanisms of amyloid A amyloidosis
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David J. Millar, Mark B. Pepys, Samrina Aslam, Janet A. Gilbertson, Toby Hunt, Shane Minogue, Raya Al-Shawi, Karl Bodin, Ivana Speck, Winston L. Hutchinson, Palma Mangione, Philip N. Hawkins, Stephan Ellmerich, J. Paul Simons, and Petra Disterer
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Genetically modified mouse ,Doxycycline ,medicine.medical_specialty ,Multidisciplinary ,Chemistry ,Amyloidosis ,Inflammation ,medicine.disease ,Blood proteins ,stomatognathic diseases ,Endocrinology ,AA amyloidosis ,Internal medicine ,medicine ,Serum amyloid A ,medicine.symptom ,Serum Amyloid A Protein ,medicine.drug - Abstract
Systemic amyloid A (AA) amyloidosis is a serious complication of chronic inflammation. Serum AA protein (SAA), an acute phase plasma protein, is deposited extracellularly as insoluble amyloid fibrils that damage tissue structure and function. Clinical AA amyloidosis is typically preceded by many years of active inflammation before presenting, most commonly with renal involvement. Using dose-dependent, doxycycline-inducible transgenic expression of SAA in mice, we show that AA amyloid deposition can occur independently of inflammation and that the time before amyloid deposition is determined by the circulating SAA concentration. High level SAA expression induced amyloidosis in all mice after a short, slightly variable delay. SAA was rapidly incorporated into amyloid, acutely reducing circulating SAA concentrations by up to 90%. Prolonged modest SAA overexpression occasionally produced amyloidosis after long delays and primed most mice for explosive amyloidosis when SAA production subsequently increased. Endogenous priming and bulk amyloid deposition are thus separable events, each sensitive to plasma SAA concentration. Amyloid deposits slowly regressed with restoration of normal SAA production after doxycycline withdrawal. Reinduction of SAA overproduction revealed that, following amyloid regression, all mice were primed, especially for rapid glomerular amyloid deposition leading to renal failure, closely resembling the rapid onset of renal failure in clinical AA amyloidosis following acute exacerbation of inflammation. Clinical AA amyloidosis rarely involves the heart, but amyloidotic SAA transgenic mice consistently had minor cardiac amyloid deposits, enabling us to extend to the heart the demonstrable efficacy of our unique antibody therapy for elimination of visceral amyloid.
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- 2013
9. Monitoring systemic amyloidosis using MRI measurements of the extracellular volume fraction
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Roger J. Ordidge, Adrienne E. Campbell-Washburn, J. Paul Simons, Anthony N. Price, Raya Al-Shawi, Tammy L. Kalber, Rupinder Ghatrora, Mark B. Pepys, James C. Moon, Philip N. Hawkins, Mark F. Lythgoe, and Stephan Ellmerich
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Male ,Cardiac function curve ,Amyloid ,Pathology ,medicine.medical_specialty ,Mice, Transgenic ,Mice ,In vivo ,Oral administration ,Internal Medicine ,Animals ,Humans ,Medicine ,Serum amyloid P component ,Serum Amyloid A Protein ,biology ,business.industry ,Myocardium ,Amyloidosis ,Extracellular Fluid ,medicine.disease ,Magnetic Resonance Imaging ,Radiography ,Serum Amyloid P-Component ,Liver ,Cardiac amyloidosis ,biology.protein ,Female ,business ,Spleen - Abstract
We report the in vivo evaluation, in a murine model, of MRI measurements of the extracellular volume fraction (ECV) for the detection and monitoring of systemic amyloidosis. A new inducible transgenic model was used, with increased production of mouse serum amyloid A protein controlled by oral administration of doxycycline, that causes both the usual hepatic and splenic amyloidosis and also cardiac deposits. ECV was measured in vivo by equilibrium contrast MRI in the heart and liver of 11 amyloidotic and 10 control mice. There was no difference in the cardiac function between groups, but ECV was significantly increased in the heart, mean (standard deviation) 0.20 (0.05) versus 0.14 (0.04), p < 0.005, and liver, 0.27 (0.04) versus 0.15 (0.04), p < 0.0005, of amyloidotic animals and was strongly correlated with the histological amyloid score, myocardium, ρ = 0.67, p < 0.01; liver, ρ = 0.87, p < 0.01. In a further four mice that received human serum amyloid P component (SAP) followed by anti-human SAP antibody, a treatment to eliminate visceral amyloid deposits, ECV in the liver and spleen returned to baseline after therapy (p < 0.01). MRI measurement of ECV is a sensitive marker of amyloid deposits with potential application for early detection and monitoring therapies promoting their clearance.
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- 2013
10. Exon Skipping of Hepatic APOB Pre-mRNA With Splice-switching Oligonucleotides Reduces LDL Cholesterol In Vivo
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J. Paul Simons, Petra Disterer, Simon N. Waddington, Bernard Khoo, Stephan Ellmerich, Raya Al-Shawi, and James S. Owen
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Very low-density lipoprotein ,Apolipoprotein B ,Oligonucleotides ,Familial hypercholesterolemia ,Lipoproteins, VLDL ,030204 cardiovascular system & hematology ,Mice ,chemistry.chemical_compound ,0302 clinical medicine ,Drug Discovery ,RNA Precursors ,0303 health sciences ,biology ,Homozygote ,Exons ,Hep G2 Cells ,3. Good health ,Liver ,Biochemistry ,LDL apheresis ,Molecular Medicine ,Original Article ,lipids (amino acids, peptides, and proteins) ,Rabbits ,medicine.medical_specialty ,RNA Splicing ,Mice, Transgenic ,Hyperlipoproteinemia Type II ,03 medical and health sciences ,Internal medicine ,Genetics ,medicine ,Animals ,Humans ,Molecular Biology ,Apolipoproteins B ,Receptors, Lipoprotein ,030304 developmental biology ,Pharmacology ,Sequence Analysis, RNA ,Cholesterol ,Cholesterol, LDL ,Genetic Therapy ,medicine.disease ,Exon skipping ,Endocrinology ,chemistry ,biology.protein ,Hypobetalipoproteinemia ,Caco-2 Cells ,Lipoprotein - Abstract
Familial hypercholesterolemia (FH) is a genetic disorder characterized by extremely high levels of plasma low-density lipoprotein (LDL), due to defective LDL receptor-apolipoprotein B (APOB) binding. Current therapies such as statins or LDL apheresis for homozygous FH are insufficiently efficacious at lowering LDL cholesterol or are expensive. Treatments that target APOB100, the structural protein of LDL particles, are potential therapies for FH. We have developed a series of APOB-directed splice-switching oligonucleotides (SSOs) that cause the expression of APOB87, a truncated isoform of APOB100. APOB87, like similarly truncated isoforms expressed in patients with a different condition, familial hypobetalipoproteinemia, lowers LDL cholesterol by inhibiting very low–density lipoprotein (VLDL) assembly and increasing LDL clearance. We demonstrate that these “APO-skip ” SSOs induce high levels of exon skipping and expression of the APOB87 isoform, but do not substantially inhibit APOB48 expression in cell lines. A single injection of an optimized APO-skip SSO into mice transgenic for human APOB resulted in abundant exon skipping that persists for >6 days. Weekly treatments generated a sustained reduction in LDL cholesterol levels of 34–51% in these mice, superior to pravastatin in a head-to-head comparison. These results validate APO-skip SSOs as a candidate therapy for FH.
- Published
- 2013
11. Type II PI4-kinases control Weibel-Palade body biogenesis and von Willebrand factor structure in human endothelial cells
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Mafalda, Lopes da Silva, Marie N, O'Connor, Janos, Kriston-Vizi, Ian J, White, Raya, Al-Shawi, J Paul, Simons, Julia, Mössinger, Volker, Haucke, and Daniel F, Cutler
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Inflammation ,Neovascularization, Pathologic ,Weibel-Palade Bodies ,Endothelial Cells ,Thrombosis ,Von Willebrand factor ,Lipids ,Exocytosis ,Minor Histocompatibility Antigens ,Mice ,Phosphotransferases (Alcohol Group Acceptor) ,Gene Expression Regulation ,Phosphatidylinositol Phosphates ,Phosphatidylinositol 4-kinase alpha ,Animals ,Humans ,Weibel-Palade body ,RNA Interference ,Histamine ,trans-Golgi Network ,Research Article ,Phosphatidylinositol 4-kinase beta - Abstract
Weibel-Palade bodies (WPBs) are endothelial storage organelles that mediate the release of molecules involved in thrombosis, inflammation and angiogenesis, including the pro-thrombotic glycoprotein von Willebrand factor (VWF). Although many protein components required for WPB formation and function have been identified, the role of lipids is almost unknown. We examined two key phosphatidylinositol kinases that control phosphatidylinositol 4-phosphate levels at the trans-Golgi network, the site of WPB biogenesis. RNA interference of the type II phosphatidylinositol 4-kinases PI4KIIα and PI4KIIβ in primary human endothelial cells leads to formation of an increased proportion of short WPB with perturbed packing of VWF, as exemplified by increased exposure of antibody-binding sites. When stimulated with histamine, these cells release normal levels of VWF yet, under flow, form very few platelet-catching VWF strings. In PI4KIIα-deficient mice, immuno-microscopy revealed that VWF packaging is also perturbed and these mice exhibit increased blood loss after tail cut compared to controls. This is the first demonstration that lipid kinases can control the biosynthesis of VWF and the formation of WPBs that are capable of full haemostatic function., Summary: Phosphatidylinositol 4 kinases regulate the formation and function of an endothelial secretory organelle that is crucial for haemostasis in mammals.
- Published
- 2016
12. Oligonucleotide-directed gene-editing technology: mechanisms and future prospects
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James S. Owen, Ioannis Papaioannou, and J. Paul Simons
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DNA Replication ,Pharmacology ,Genetics ,DNA repair ,Clinical Biochemistry ,Oligonucleotides ,Gene targeting ,Genetic Therapy ,Mismatch Repair Protein ,Biology ,Zinc finger nuclease ,Genome editing ,Gene Targeting ,Drug Discovery ,Animals ,Humans ,DNA mismatch repair ,Genetic Engineering ,Homologous recombination ,Nucleotide excision repair - Abstract
Gene editing, as defined here, uses short synthetic oligonucleotides to introduce small, site-specific changes into mammalian genomes, including repair of genetic point mutations. Early RNA-DNA oligonucleotides (chimeraplasts) were problematic, but application of single-stranded all-DNA molecules (ssODNs) has matured the technology into a reproducible tool with therapeutic potential.The review illustrates how gene-editing mechanisms are linked to DNA repair systems and DNA replication, and explains that while homologous recombination (HR) and nucleotide excision repair (NER) are implicated, the mismatch repair (MMR) system is inhibitory. Although edited cells often arrest in late S-phase or G2-phase, alternative ssODN chemistries can improve editing efficiency and cell viability. The final section focuses on the exciting tandem use of ssODNs with zinc finger nucleases to achieve high frequency genome editing.For a decade, changing the genetic code of cells via ssODNs was largely done in reporter gene systems to optimize methods and as proof-of-principle. Today, editing endogenous genes is advancing, driven by a clearer understanding of mechanisms, by effective ssODN designs and by combination with engineered endonuclease technologies. Success is becoming routine in vitro and ex vivo, which includes editing embryonic stem (ES) and induced pluripotent stem (iPS) cells, suggesting that in vivo organ gene editing is a future option.
- Published
- 2012
13. Targeted In Situ Gene Correction of DysfunctionalAPOEAlleles to Produce Atheroprotective Plasma ApoE3 Protein
- Author
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J. Paul Simons, James S. Owen, and Ioannis Papaioannou
- Subjects
Apolipoprotein E ,Gene isoform ,lcsh:Diseases of the circulatory (Cardiovascular) system ,Gene targeting ,Review Article ,Biology ,Bioinformatics ,Exon ,lcsh:RC666-701 ,Cancer research ,Allele ,Cardiology and Cardiovascular Medicine ,Homologous recombination ,Induced pluripotent stem cell ,Gene - Abstract
Cardiovascular disease is the leading worldwide cause of death. Apolipoprotein E (ApoE) is a 34-kDa circulating glycoprotein, secreted by the liver and macrophages with pleiotropic antiatherogenic functions and hence a candidate to treat hypercholesterolaemia and atherosclerosis. Here, we describe atheroprotective properties of ApoE, though also potential proatherogenic actions, and the prevalence of dysfunctional isoforms, outline conventional gene transfer strategies, and then focus on gene correction therapeutics that can repair defectiveAPOEalleles. In particular, we discuss the possibility and potential benefit of applying in combination two technical advances to repair aberrantAPOEgenes: (i) an engineered endonuclease to introduce a double-strand break (DSB) in exon 4, which contains the common, but dysfunctional,ε2 andε4 alleles; (ii) an efficient and selectable template for homologous recombination (HR) repair, namely, an adeno-associated viral (AAV) vector, which harbours wild-typeAPOEsequence. This technology is applicable ex vivo, for example to target haematopoietic or induced pluripotent stem cells, and also for in vivo hepatic gene targeting. It is to be hoped that such emerging technology will eventually translate to patient therapy to reduce CVD risk.
- Published
- 2012
14. Amyloid persistence in decellularized liver: biochemical and histopathological characterization
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Giuseppe, Mazza, J Paul, Simons, Raya, Al-Shawi, Stephan, Ellmerich, Luca, Urbani, Sofia, Giorgetti, Graham W, Taylor, Janet A, Gilbertson, Andrew R, Hall, Walid, Al-Akkad, Dipok, Dhar, Philip N, Hawkins, Paolo, De Coppi, Massimo, Pinzani, Vittorio, Bellotti, and P Patrizia, Mangione
- Subjects
Amyloid ,Serum Amyloid A Protein ,Liver Diseases ,Molecular Sequence Data ,Mice, Transgenic ,Amyloidosis ,decellularized liver ,scaffold ,Article ,Extracellular Matrix ,Mice, Inbred C57BL ,Liver ,mental disorders ,AA amyloidosis ,Animals ,Female ,Immunoglobulin Light-chain Amyloidosis ,Original Article ,Amino Acid Sequence ,AEF - Abstract
Systemic amyloidoses are a group of debilitating and often fatal diseases in which fibrillar protein aggregates are deposited in the extracellular spaces of a range of tissues. The molecular basis of amyloid formation and tissue localization is still unclear. Although it is likely that the extracellular matrix (ECM) plays an important role in amyloid deposition, this interaction is largely unexplored, mostly because current analytical approaches may alter the delicate and complicated three-dimensional architecture of both ECM and amyloid. We describe here a decellularization procedure for the amyloidotic mouse liver which allows high-resolution visualization of the interactions between amyloid and the constitutive fibers of the extracellular matrix. The primary structure of the fibrillar proteins remains intact and the amyloid fibrils retain their amyloid enhancing factor activity.
- Published
- 2015
15. Loss of phosphatidylinositol 4-kinase 2α activity causes late onset degeneration of spinal cord axons
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Shane Minogue, Claudia G. Wiedemann, Raya Al-Shawi, Stylianos Evangelou, J. Justin Hsuan, J. Paul Simons, Thomas T. Warner, Rosalind H.M. King, Talvinder S. Sihra, Mark G. Waugh, and Andrzej Loesch
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Cerebellum ,Hereditary spastic paraplegia ,Biology ,Minor Histocompatibility Antigens ,Mice ,chemistry.chemical_compound ,medicine ,Animals ,Aspartate Aminotransferases ,Phosphatidylinositol ,Kinase activity ,Mice, Knockout ,Multidisciplinary ,Kinase ,Neurodegeneration ,Alanine Transaminase ,Biological Sciences ,medicine.disease ,Axons ,Cell biology ,Phosphotransferases (Alcohol Group Acceptor) ,medicine.anatomical_structure ,Spinal Cord ,Biochemistry ,chemistry ,Gliosis ,Nerve Degeneration ,Signal transduction ,medicine.symptom ,Blood Chemical Analysis ,Signal Transduction - Abstract
Phosphoinositide (PI) lipids are intracellular membrane signaling intermediates and effectors produced by localized PI kinase and phosphatase activities. Although many signaling roles of PI kinases have been identified in cultured cell lines, transgenic animal studies have produced unexpected insight into the in vivo functions of specific PI 3- and 5-kinases, but no mammalian PI 4-kinase (PI4K) knockout has previously been reported. Prior studies using cultured cells implicated the PI4K2α isozyme in diverse functions, including receptor signaling, ion channel regulation, endosomal trafficking, and regulated secretion. We now show that despite these important functions, mice lacking PI4K2α kinase activity initially appear normal. However, adult Pi4k2a GT/GT animals develop a progressive neurological disease characterized by tremor, limb weakness, urinary incontinence, and premature mortality. Histological analysis of aged Pi4k2a GT/GT animals revealed lipofuscin-like deposition and gliosis in the cerebellum, and loss of Purkinje cells. Peripheral nerves are essentially normal, but massive axonal degeneration was found in the spinal cord in both ascending and descending tracts. These results reveal a previously undescribed role for aberrant PI signaling in neurological disease that resembles autosomal recessive hereditary spastic paraplegia.
- Published
- 2009
16. Overexpression of 5-HT2Creceptors in forebrain leads to elevated anxiety and hypoactivity
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Karen French, Raya Al-Shawi, Atsuko Kimura, Karen E. Chapman, Megan C. Holmes, Paula L. Stevenson, Gavin MacColl, Roderick N. Carter, J. Paul Simons, and Valerie Kelly
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Male ,Agonist ,medicine.medical_specialty ,medicine.drug_class ,Neuroscience(all) ,Receptor expression ,Gene Expression ,Mice, Transgenic ,Stimulation ,transgenic mice ,Anxiety ,Motor Activity ,5-HT7 receptor ,Behavioral Neuroscience ,Mice ,03 medical and health sciences ,Prosencephalon ,0302 clinical medicine ,Internal medicine ,Chlorocebus aethiops ,Receptor, Serotonin, 5-HT2C ,medicine ,Animals ,Receptor ,030304 developmental biology ,5-HT2C receptor ,0303 health sciences ,General Neuroscience ,behaviour ,Rats ,3. Good health ,Mice, Inbred C57BL ,Endocrinology ,COS Cells ,Forebrain ,Mice, Inbred CBA ,Serotonin ,Psychology ,030217 neurology & neurosurgery - Abstract
The 5-HT(2C) receptor has been implicated in mood and eating disorders. In general, it is accepted that 5-HT(2C) receptor agonists increase anxiety behaviours and induce hypophagia. However, pharmacological analysis of the roles of these receptors is hampered by the lack of selective ligands and the complex regulation of receptor isoforms and expression levels. Therefore, the exact role of 5-HT(2C) receptors in mood disorders remain controversial, some suggesting agonists and others suggesting antagonists may be efficacious antidepressants, while there is general agreement that antagonists are beneficial anxiolytics. In order to test the hypothesis that increased 5-HT(2C) receptor expression, and thus increased 5-HT(2C) receptor signalling, is causative in mood disorders, we have undertaken a transgenic approach, directly altering the 5-HT(2C) receptor number in the forebrain and evaluating the consequences on behaviour. Transgenic mice overexpressing 5-HT(2C) receptors under the control of the CaMKIIalpha promoter (C2CR mice) have elevated 5-HT(2C) receptor mRNA levels in cerebral cortex and limbic areas (including the hippocampus and amygdala), but normal levels in the hypothalamus, resulting in > 100% increase in the number of 5-HT(2C) ligand binding sites in the forebrain. The C2CR mice show increased anxiety-like behaviour in the elevated plus-maze, decreased wheel-running behaviour and reduced activity in a novel environment. These behaviours were observed in the C2CR mice without stimulation by exogenous ligands. Our findings support a role for 5-HT(2C) receptor signalling in anxiety disorders. The C2CR mouse model offers a novel and effective approach for studying disorders associated with 5-HT(2C) receptors.
- Published
- 2009
17. Preliminary evaluation of a self-complementary AAV2/8 vector for hepatic gene transfer of human apoE3 to inhibit atherosclerotic lesion development in apoE-deficient mice
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James S. Owen, Jenny McIntosh, Ian R. Graham, Amit C. Nathwani, Eyman Osman, George Dickson, Vanessa C. Evans, Takis Athanasopoulos, and J. Paul Simons
- Subjects
Male ,Apolipoprotein E ,medicine.medical_specialty ,Very low-density lipoprotein ,Time Factors ,Genetic enhancement ,Genetic Vectors ,Apolipoprotein E3 ,Pilot Projects ,Lipoproteins, VLDL ,Biology ,Gene delivery ,Viral vector ,Lesion ,Mice ,chemistry.chemical_compound ,Apolipoproteins E ,Sex Factors ,Transduction, Genetic ,Cell Line, Tumor ,Internal medicine ,medicine ,Animals ,Humans ,Promoter Regions, Genetic ,Aorta ,Mice, Knockout ,Cholesterol ,Genetic Therapy ,Dependovirus ,Atherosclerosis ,Lipoproteins, LDL ,Mice, Inbred C57BL ,Disease Models, Animal ,Endocrinology ,Liver ,chemistry ,Immunology ,Female ,medicine.symptom ,Lipoproteins, HDL ,Cardiology and Cardiovascular Medicine ,Lipoprotein - Abstract
Hepatic gene transfer of atheroprotective human apoE by recombinant viral vectors can reverse hypercholesterolaemia and inhibit atherogenesis in apoE-deficient (apoE(-/-)) mice. Here, in preliminary studies we assess the effectiveness of a recently developed self-complementary adeno-associated virus (scAAV) serotype 8 vector, driven by a hepatocyte-specific promoter (LP1), for liver-directed gene delivery of human apoE3. Vector viability was validated by transducing cultured HepG2 cells and measuring secretion of apoE3 protein. Male and female apoE(-/-) mice, 6-month old and fed on normal chow, were intravenously injected with 1x10(11) vg (vector genomes) of scAAV2/8.LP1.apoE3; age-matched untreated mice served as controls. In male mice, plasma apoE3 levels were sufficiently high (up to 17 microg/ml) to normalize plasma total cholesterol and ameliorate their proatherogenic lipoprotein profile, by reducing VLDL/LDL and increasing HDL 5-fold. At termination (12 weeks) development of aortic atherosclerosis was significantly retarded by 58% (aortic lesion area 8.2+/-1.4% vs. 19.3+/-2.4% in control males; P
- Published
- 2009
18. Reducing β-amyloid by inhibition of BACE1: how low should you go?
- Author
-
J. Paul Simons, John Hardy, and Richard Killick
- Subjects
business.industry ,Dendritic Spines ,Brain ,Pharmacology ,Synaptic Potentials ,Cognition ,β amyloid ,Medicine ,Animals ,Aspartic Acid Endopeptidases ,Humans ,Cognitive Dysfunction ,Amyloid Precursor Protein Secretases ,business ,Neuroscience ,Biological Psychiatry - Published
- 2015
19. Correction of the Neuropathogenic Human Apolipoprotein E4 (APOE4) Gene to APOE3 in Vitro Using Synthetic RNA/DNA Oligonucleotides (Chimeraplasts)
- Author
-
James S. Owen, J. George Dickson, J. Paul Simons, and Aristides D. Tagalakis
- Subjects
Oligonucleotide ,Chinese hamster ovary cell ,RNA ,General Medicine ,Biology ,Molecular biology ,law.invention ,Cellular and Molecular Neuroscience ,chemistry.chemical_compound ,chemistry ,law ,Recombinant DNA ,biology.protein ,Cytotoxic T cell ,Gene ,DNA ,Polymerase - Abstract
Apolipoprotein E (apoE) is a multifunctional circulating 34-kDa protein, whose gene encodes single-nucleotide polymorphisms linked to several neurodegenerative diseases. Here, we evaluate whether synthetic RNA/DNA oligonucleotides (chimeraplasts) can convert a dysfunctional gene, APOE4 (C → T, Cys112Arg), a risk factor for Alzheimer’s disease and other neurological disorders, into wild-type APOE3. In preliminary experiments, we treated recombinant Chinese hamster ovary (CHO) cells stably secreting apoE4 and lymphocytes from a patient homozygous for the ɛ4 allele with a 68-mer apoE4-to-apoE3 chimeraplast, complexed to the cationic delivery reagent, polyethyleneimine. Genotypes were analyzed after 48 h by routine polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) and by genomic sequencing. Clear conversions of APOE4 to APOE3 were detected using either technique, although high concentrations of chimeraplast were needed (≥800 nM). Spiking experiments of PCR reactions or CHO-K1 cells with the chimeraplast confirmed that the repair was not artifactual. However, when treated recombinant CHO cells were passaged for 10 d and then subcloned, no conversion could be detected when >90 clones were analyzed by locus-specific PCR-RFLP. We conclude that the apparent efficient repair of the APOE4 gene in CHO cells or lymphocytes 48 h post-treatment is unstable, possibly because the high levels of chimeraplast and polyethyleneimine that were needed to induce nucleotide substitution are cytotoxic.
- Published
- 2005
20. Systemic exosomal siRNA delivery reduced alpha-synuclein aggregates in brains of transgenic mice
- Author
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J Mark, Cooper, P B Oscar, Wiklander, Joel Z, Nordin, Raya, Al-Shawi, Matthew J, Wood, Mansi, Vithlani, Anthony H V, Schapira, J Paul, Simons, Samir, El-Andaloussi, and Lydia, Alvarez-Erviti
- Subjects
Time Factors ,Genetic Vectors ,Brain ,Mice, Transgenic ,Dendritic Cells ,Exosomes ,Transfection ,Peptide Fragments ,Mice, Inbred C57BL ,Mice ,Neuroblastoma ,Viral Proteins ,Gene Expression Regulation ,Cell Line, Tumor ,Mutation ,alpha-Synuclein ,Animals ,Humans ,RNA, Messenger ,RNA, Small Interfering ,Glycoproteins - Abstract
Alpha-synuclein (α-Syn) aggregates are the main component of Lewy bodies, which are the characteristic pathological feature in Parkinson's disease (PD) brain. Evidence that α-Syn aggregation can be propagated between neurones has led to the suggestion that this mechanism is responsible for the stepwise progression of PD pathology. Decreasing α-Syn expression is predicted to attenuate this process and is thus an attractive approach to delay or halt PD progression. We have used α-Syn small interfering RNA (siRNA) to reduce total and aggregated α-Syn levels in mouse brains. To achieve widespread delivery of siRNAs to the brain we have peripherally injected modified exosomes expressing Ravies virus glycoprotein loaded with siRNA. Normal mice were analyzed 3 or 7 days after injection. To evaluate whether this approach can decrease α-Syn aggregates, we repeated the treatment using transgenic mice expressing the human phosphorylation-mimic S129D α-Syn, which exhibits aggregation. In normal mice we detected significantly reduced α-Syn messenger RNA (mRNA) and protein levels throughout the brain 3 and 7 days after treatment with RVG-exosomes loaded with siRNA to α-Syn. In S129D α-Syn transgenic mice we found a decreased α-Syn mRNA and protein levels throughout the brain 7 days after injection. This resulted in significant reductions in intraneuronal protein aggregates, including in dopaminergic neurones of the substantia nigra. This study highlights the therapeutic potential of RVG-exosome delivery of siRNA to delay and reverse brain α-Syn pathological conditions.
- Published
- 2014
21. C-reactive protein is essential for innate resistance to pneumococcal infection
- Author
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J Paul, Simons, Jutta M, Loeffler, Raya, Al-Shawi, Stephan, Ellmerich, Winston L, Hutchinson, Glenys A, Tennent, Aviva, Petrie, John G, Raynes, J Brian, de Souza, Rachel A, Lawrence, Kevin D, Read, and Mark B, Pepys
- Subjects
Mice, Knockout ,mouse knockout ,Original Articles ,Immunity, Innate ,Pneumococcal Infections ,host resistance ,C-reactive protein ,Mice ,Phenotype ,Streptococcus pneumoniae ,pneumococcal infection ,Animals ,Humans ,anti-nuclear antibodies - Abstract
No deficiency of human C-reactive protein (CRP), or even structural polymorphism of the protein, has yet been reported so its physiological role is not known. Here we show for the first time that CRP-deficient mice are remarkably susceptible to Streptococcus pneumoniae infection and are protected by reconstitution with isolated pure human CRP, or by anti-pneumococcal antibodies. Autologous mouse CRP is evidently essential for innate resistance to pneumococcal infection before antibodies are produced. Our findings are consistent with the significant association between clinical pneumococcal infection and non-coding human CRP gene polymorphisms which affect CRP expression. Deficiency or loss of function variation in CRP may therefore be lethal at the first early-life encounter with this ubiquitous virulent pathogen, explaining the invariant presence and structure of CRP in human adults.
- Published
- 2014
22. Pharmacological removal of serum amyloid P component from intracerebral plaques and cerebrovascular Aβ amyloid deposits in vivo
- Author
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Sebastian Brandner, David J. Werring, David J. Millar, Glenys A. Tennent, J. Paul Simons, Mark B. Pepys, Raya Al-Shawi, and Angela Richard-Londt
- Subjects
0301 basic medicine ,Pathology ,medicine.medical_specialty ,Amyloid ,Immunology ,Mice, Transgenic ,Plaque, Amyloid ,Protein Aggregation, Pathological ,General Biochemistry, Genetics and Molecular Biology ,Mice ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Alzheimer Disease ,mental disorders ,medicine ,Animals ,Humans ,Senile plaques ,cerebral amyloid angiopathy ,lcsh:QH301-705.5 ,Research Articles ,Serum amyloid P component ,Amyloid beta-Peptides ,biology ,Research ,General Neuroscience ,P3 peptide ,aβ amyloid ,serum amyloid p component ,medicine.disease ,Immunohistochemistry ,Biochemistry of Alzheimer's disease ,cphpc ,Disease Models, Animal ,Serum Amyloid P-Component ,030104 developmental biology ,lcsh:Biology (General) ,chemistry ,CPHPC ,biology.protein ,alzheimer's disease ,Cerebral amyloid angiopathy ,Alzheimer's disease ,030217 neurology & neurosurgery - Abstract
Human amyloid deposits always contain the normal plasma protein serum amyloid P component (SAP), owing to its avid but reversible binding to all amyloid fibrils, including the amyloid β (Aβ) fibrils in the cerebral parenchyma plaques and cerebrovascular amyloid deposits of Alzheimer's disease (AD) and cerebral amyloid angiopathy (CAA). SAP promotes amyloid fibril formation in vitro , contributes to persistence of amyloid in vivo and is also itself directly toxic to cerebral neurons. We therefore developed (R)-1-[6-[(R)-2-carboxy-pyrrolidin-1-yl]-6-oxo-hexanoyl]pyrrolidine-2-carboxylic acid (CPHPC), a drug that removes SAP from the blood, and thereby also from the cerebrospinal fluid (CSF), in patients with AD. Here we report that, after introduction of transgenic human SAP expression in the TASTPM double transgenic mouse model of AD, all the amyloid deposits contained human SAP. Depletion of circulating human SAP by CPHPC administration in these mice removed all detectable human SAP from both the intracerebral and cerebrovascular amyloid. The demonstration that removal of SAP from the blood and CSF also removes it from these amyloid deposits crucially validates the strategy of the forthcoming ‘Depletion of serum amyloid P component in Alzheimer's disease (DESPIAD)’ clinical trial of CPHPC. The results also strongly support clinical testing of CPHPC in patients with CAA.
- Published
- 2016
23. Clusterin regulates β-amyloid toxicity via Dickkopf-1-driven induction of the wnt-PCP-JNK pathway
- Author
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Chantelle Fernandes, John Stephenson, Karelle Leroy, Alessia Usardi, Anbarasu Lourdusamy, Richard Williamson, Patrick M. Nolan, Elena M. Ribe, Wendy Noble, Angela Hodges, Christopher A. Reynolds, Richard Wroe, Chantal Bazenet, Claudie Hooper, Mirsada Causevic, Stuart Kellie, Alvina W.M. To, J-P. Brion, Raya Al-Shawi, Simon Lovestone, Katie Lunnon, Gerome Breen, Richard Dobson, Martha Robinson, J. Paul Simons, Simon J. Furney, Richard Killick, Kuang Lin, and Bilal Malik
- Subjects
Male ,clusterin ,Acknowledged-BRC ,Rats, Sprague-Dawley ,Mice ,0302 clinical medicine ,tau ,Enzyme Inhibitors ,Acknowledged-BRC-13/14 ,Cells, Cultured ,Neurons ,0303 health sciences ,biology ,Kinase ,Wnt signaling pathway ,amyloid ,Sciences bio-médicales et agricoles ,Alzheimer's ,3. Good health ,Cell biology ,Psychiatry and Mental health ,Intercellular Signaling Peptides and Proteins ,Female ,Original Article ,Genetically modified mouse ,musculoskeletal diseases ,MAP Kinase Signaling System ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,Dickkopf-1 ,Downregulation and upregulation ,Alzheimer Disease ,Alzheimers ,medicine ,Gene silencing ,Animals ,Humans ,Molecular Biology ,030304 developmental biology ,Aged ,Amyloid beta-Peptides ,Clusterin ,Neurotoxicity ,medicine.disease ,Embryo, Mammalian ,Sciences biomédicales ,Rats ,Mice, Inbred C57BL ,Wnt Proteins ,wnt ,DKK1 ,Gene Expression Regulation ,biology.protein ,Neuroscience ,030217 neurology & neurosurgery - Abstract
Although the mechanism of Aβ action in the pathogenesis of Alzheimer's disease (AD) has remained elusive, it is known to increase the expression of the antagonist of canonical wnt signalling, Dickkopf-1 (Dkk1), whereas the silencing of Dkk1 blocks Aβ neurotoxicity. We asked if clusterin, known to be regulated by wnt, is part of an Aβ/Dkk1 neurotoxic pathway. Knockdown of clusterin in primary neurons reduced Aβ toxicity and DKK1 upregulation and, conversely, Aβ increased intracellular clusterin and decreased clusterin protein secretion, resulting in the p53-dependent induction of DKK1. To further elucidate how the clusterin-dependent induction of Dkk1 by Aβ mediates neurotoxicity, we measured the effects of Aβ and Dkk1 protein on whole-genome expression in primary neurons, finding a common pathway suggestive of activation of wnt-planar cell polarity (PCP)-c-Jun N-terminal kinase (JNK) signalling leading to the induction of genes including EGR1 (early growth response-1), NAB2 (Ngfi-A-binding protein-2) and KLF10 (Krüppel-like factor-10) that, when individually silenced, protected against Aβ neurotoxicity and/or tau phosphorylation. Neuronal overexpression of Dkk1 in transgenic mice mimicked this Aβ-induced pathway and resulted in age-dependent increases in tau phosphorylation in hippocampus and cognitive impairment. Furthermore, we show that this Dkk1/wnt-PCP-JNK pathway is active in an Aβ-based mouse model of AD and in AD brain, but not in a tau-based mouse model or in frontotemporal dementia brain. Thus, we have identified a pathway whereby Aβ induces a clusterin/p53/Dkk1/wnt-PCP-JNK pathway, which drives the upregulation of several genes that mediate the development of AD-like neuropathologies, thereby providing new mechanistic insights into the action of Aβ in neurodegenerative diseases.Molecular Psychiatry advance online publication, 20 November 2012; doi:10.1038/mp.2012.163., JOURNAL ARTICLE, SCOPUS: ar.j, info:eu-repo/semantics/published
- Published
- 2012
24. Oligonucleotide-mediated gene editing is underestimated in cells expressing mutated green fluorescent protein and is positively associated with target protein expression
- Author
-
Petra, Disterer, Ioannis, Papaioannou, Vanessa C, Evans, J Paul, Simons, and James S, Owen
- Subjects
Green Fluorescent Proteins ,Oligonucleotides ,CHO Cells ,Genetic Therapy ,Hep G2 Cells ,Flow Cytometry ,Transfection ,Cricetulus ,HEK293 Cells ,Mutagenesis ,Cricetinae ,Animals ,Humans ,Genetic Engineering - Abstract
Single-stranded DNA oligonucleotides (ssODNs) can introduce small, specific sequence alterations into genomes. Potential applications include creating disease-associated mutations in cell lines or animals, functional studies of single nucleotide polymorphisms and, ultimately, clinical therapy by correcting genetic point mutations. Here, we report feasibility studies into realizing this potential by targeting a reporter gene, mutated enhanced green fluorescent protein (mEGFP).Three mammalian cell lines, CHO, HEK293T and HepG2, expressing multiple copies of mEGFP were transfected with a 27-mer ssODN capable of restoring fluorescence. Successful cell correction was quantified by flow cytometry.Gene editing in each isogenic cell line, as measured by percentage of green cells, correlated tightly with target protein levels, and thus gene expression. In the total population, 2.5% of CHO-mEGFP cells were successfully edited, although, remarkably, in the highest decile producing mEGFP protein, over 20% of the cells had restored green fluorescence. Gene-edited clones initially selected for green fluorescence lost EGFP expression during cell passaging, which partly reflected G2-phase cycle arrest and perhaps eventual cell death. The major cause, however, was epigenetic down-regulation; incubation with sodium butyrate or 5-aza-2'-deoxycytidine reactivated fluorescent EGFP expression and hence established that the repaired genotype was stable.Our data establish that ssODN-mediated gene editing is underestimated in cultured mammalian cells expressing nonfluorescent mutated EGFP, because of variable expression of this mEGFP target gene in the cell population. This conclusion was endorsed by studies in HEK293T-mEGFP and HepG2-mEGFP cells. We infer that oligonucleotide-directed editing of endogenous genes is feasible, particularly for those that are transcriptionally active.
- Published
- 2012
25. The effects of terminal heterologies on gene targeting by insertion vectors in embryonic stem cells
- Author
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Satish Kumar and J. Paul Simons
- Subjects
Hypoxanthine Phosphoribosyltransferase ,Stem Cells ,Genetic Vectors ,Gene targeting ,Heterologous ,Transfection ,Biology ,Molecular biology ,Homology (biology) ,Cell Line ,Mice ,chemistry.chemical_compound ,chemistry ,DNA Transposable Elements ,Genetics ,Animals ,Homologous recombination ,Gene ,DNA ,Recombination - Abstract
We have examined the effects of placing nonhomologous DNA on the ends of an insertion-type gene targeting vector. The presence of terminal heterologies was found to be compatible with insertion targeting, and the terminal heterologies were efficiently removed. Terminal heterologies reduced the frequency of gene targeting to variable extents. The degree of inhibition of targeting was dependent on the length and the position of the heterology: 2.1kb heterologous sequences were more inhibitory than shorter regions of heterology, and heterology placed on the end of the long (4.8kb) arm of homology was more inhibitory than heterology positioned on the end of the short (0.8kb) arm. When heterology was placed on both arms of the targeting vector the targeting efficiencies were similar to or higher than when heterology was present on the long arm only. These results suggest that terminal sequences are removed simultaneously from both ends of targeting vectors. The removal of terminal sequences probably occurs by exonucleolytic degradation of both strands at each end, and removal of at least one of the strands is intimately coupled with the process of homologous recombination. These findings have implications for the design of gene targeting vectors.
- Published
- 1993
26. P2‐319: An Aβ transcription signature
- Author
-
Brian H. Anderton, Simon Lovestone, Alvina W.M. To, Elena M. Ribe, Claudie Hooper, Simon J. Furney, Richard Killick, Kuang Lin, J. Paul Simons, Raya Al-Shawi, Cathy Fernandes, and Bilal Malik
- Subjects
Psychiatry and Mental health ,Cellular and Molecular Neuroscience ,Developmental Neuroscience ,Epidemiology ,Transcription (biology) ,Health Policy ,Neurology (clinical) ,Geriatrics and Gerontology ,Biology ,Cell biology - Published
- 2010
27. Human apolipoprotein E expression from mouse skeletal muscle by electrotransfer of nonviral DNA (plasmid) and pseudotyped recombinant adeno-associated virus (AAV2/7)
- Author
-
Ian R. Graham, Keith Foster, James S. Owen, Helen Foster, George Dickson, J. Paul Simons, Vanessa C. Evans, and Takis Athanasopoulos
- Subjects
Apolipoprotein E ,Genetic enhancement ,Genetic Vectors ,Muscle Fibers, Skeletal ,Biology ,Recombinant virus ,medicine.disease_cause ,Injections, Intramuscular ,law.invention ,Myoblasts ,Mice ,Plasmid ,Apolipoproteins E ,law ,Genetics ,medicine ,Animals ,Humans ,Muscle, Skeletal ,Promoter Regions, Genetic ,Molecular Biology ,Adeno-associated virus ,Cells, Cultured ,Gene Transfer Techniques ,Transfection ,DNA ,Genetic Therapy ,Dependovirus ,Atherosclerosis ,Molecular biology ,Recombinant Proteins ,Electroporation ,Recombinant DNA ,Molecular Medicine ,C2C12 ,Plasmids - Abstract
Plasma apolipoprotein E (apoE) has multiple atheroprotective actions. However, although liver-directed adenoviral gene transfer of apoE reverses hypercholesterolemia and inhibits atherogenesis in apoE-deficient (apoE(-/-)) mice, safety considerations have revived interest in nonviral DNA (plasmid) and nonpathogenic adeno-associated viral (AAV) vectors. Here, we assess the effectiveness of these two delivery vehicles by minimally invasive intramuscular injection. First, we constructed AAV2-based expression plasmids harboring human apoE3 cDNA, driven by two muscle-specific promoters (CK6 and C5-12) and one ubiquitous promoter (CAG); each efficiently expressed apoE3 in transfected cultured C2C12 mouse myoblasts, although muscle-specific promoters were active only in differentiated multinucleate myotubes. Second, a pilot study verified that electrotransfer of the CAG-driven plasmid (p.CAG.apoE3) into tibialis anterior muscles, pretreated with hyaluronidase, of apoE(-/-) mice significantly enhanced (p0.001) local intramuscular expression of apoE3. However, in a 7-day experiment, the CK6- and C5-12-driven plasmids produced less apoE3 in muscle than did p.CAG.apoE3 (0.61 +/- 0.38 and 0.45 +/- 0.38 vs. 13.38 +/- 7.46 microg of apoE3 per muscle, respectively), but plasma apoE3 levels were below our detection limit (15 ng/ml) in all mice and did not reverse the hyperlipidemia. Finally, we showed that intramuscular injection of a cross-packaged AAV serotype 7 viral vector, expressing human apoE3 from the CAG promoter, resulted in increasing levels of apoE3 in plasma over 4 weeks, although the concentration reached (1.40 +/- 0.35 microg/ml) was just below the threshold level needed to reduce the hypercholesterolemia. We conclude that skeletal muscle can serve as an effective secretory platform to express the apoE3 transgene, but that improved gene transfer vectors are needed to achieve full therapeutic levels of plasma apoE3 protein.
- Published
- 2008
28. Correction of the neuropathogenic human apolipoprotein E4 (APOE4) gene to APOE3 in vitro using synthetic RNA/DNA oligonucleotides (chimeraplasts)
- Author
-
Aristides D, Tagalakis, J George, Dickson, James S, Owen, and J Paul, Simons
- Subjects
Base Sequence ,Genotype ,Apolipoprotein E4 ,Molecular Sequence Data ,Apolipoprotein E3 ,Oligonucleotides ,CHO Cells ,DNA ,Genetic Therapy ,Apolipoproteins E ,Cricetinae ,Animals ,Humans ,RNA ,Lymphocytes ,Nervous System Diseases - Abstract
Apolipoprotein E (apoE) is a multifunctional circulating 34-kDa protein, whose gene encodes single-nucleotide polymorphisms linked to several neurodegenerative diseases. Here, we evaluate whether synthetic RNA/DNA oligonucleotides (chimeraplasts) can convert a dysfunctional gene, APOE4 (C, A and E, T, Cys112Arg), a risk factor for Alzheimer's disease and other neurological disorders, into wild-type APOE3. In preliminary experiments, we treated recombinant Chinese hamster ovary (CHO) cells stably secreting apoE4 and lymphocytes from a patient homozygous for the epsilon 4 allele with a 68-mer apoE4-to-apoE3 chimeraplast, complexed to the cationic delivery reagent, polyethyleneimine. Genotypes were analyzed after 48 h by routine polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) and by genomic sequencing. Clear conversions of APOE4 to APOE3 were detected using either technique, although high concentrations of chimeraplast were needed (or =800 nM). Spiking experiments of PCR reactions or CHO-K1 cells with the chimeraplast confirmed that the repair was not artifactual. However, when treated recombinant CHO cells were passaged for 10 d and then subcloned, no conversion could be detected when90 clones were analyzed by locus-specific PCR-RFLP. We conclude that the apparent efficient repair of the APOE4 gene in CHO cells or lymphocytes 48 h post-treatment is unstable, possibly because the high levels of chimeraplast and polyethyleneimine that were needed to induce nucleotide substitution are cytotoxic.
- Published
- 2004
29. Differential spatio-temporal expression of alpha-dystrobrevin-1 during mouse development
- Author
-
Derek J. Blake, J. Paul Simons, Dariusz C. Górecki, Chun Fu Lien, Christina Vlachouli, Lien, Cf, Vlachouli, Christina, Blake, Dj, Simons, Jp, and Górecki, Dc
- Subjects
Central Nervous System ,Blotting, Western ,Gene Expression ,Biology ,Epithelium ,dystrophin ,Mice ,Glycoprotein complex ,Dystrobrevin ,Genetics ,medicine ,Animals ,Inner ear ,Molecular Biology ,development ,Embryogenesis ,Gene Expression Regulation, Developmental ,Sense Organs ,dystrobrevin ,Skeletal muscle ,Anatomy ,Spinal cord ,Immunohistochemistry ,Cell biology ,medicine.anatomical_structure ,Dystrophin-Associated Proteins ,Knockout mouse ,biology.protein ,Dystrophin ,Developmental Biology - Abstract
Dystrobrevins are a family of dystrophin-related and dystrophin-associated proteins. alpha-dystrobrevin-1 knockout mice suffer from skeletal and cardiac myopathies. It has been suggested that the pathology is caused by the loss of signalling functions but the exact role of dystrobrevins is largely unknown. We have analysed the spatial and temporal expression of alpha-dystrobrevin-1 during mouse embryogenesis and found striking developmental regulation and distribution patterns. During development this protein was expressed not only in muscle but also in the CNS, sensory organs, epithelia and skeleton. Particularly interesting was the correlation of alpha-dystrobrevin-1 expression with the induction of various differentiation processes in the developing eye, inner ear, pituitary, blood-brain barrier, stomach epithelium and areas of the brain, dorsal root ganglia and spinal cord. In contrast, this specific expression at the induction phase decreased/disappeared at later stages of development.
- Published
- 2004
30. Structural diversity despite strong evolutionary conservation in the 5'-untranslated region of the P-type dystrophin transcript
- Author
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Eric A. Barnard, Dariusz C. Górecki, J. Paul Simons, Nobuhiro Noro, Hassan Abdulrazzak, and Geoffrey Goldspink
- Subjects
Untranslated region ,Five prime untranslated region ,Transcription, Genetic ,Molecular Sequence Data ,Muscle Fibers, Skeletal ,Biology ,Conserved sequence ,Dystrophin ,Evolution, Molecular ,Cellular and Molecular Neuroscience ,Mice ,Species Specificity ,Cerebellum ,Gene expression ,Animals ,Humans ,ORFS ,Muscle, Skeletal ,Promoter Regions, Genetic ,Molecular Biology ,Cells, Cultured ,Conserved Sequence ,Genetics ,Neurons ,Messenger RNA ,Base Sequence ,Alternative splicing ,Intron ,Genetic Variation ,Cell Biology ,Alternative Splicing ,5' Untranslated Regions - Abstract
Analysis of the 5'-flanking regions of the Purkinje (P-) dystrophin genes and mRNAs in different species revealed strong sequence conservation but functional diversity. Multiple transcription initiation sites were identified in cerebella and muscles, tissues expressing P-dystrophin. The predominant initiation site was conserved, with another muscle-specific site located upstream. Despite sequence homology, significant tissue- and species-specific structural diversity in the P-type 5'-ends exists, including alternative splicing within the 5'-untranslated region combined with alternative splicing of intron 1. One amino terminus is conserved in mammals and, to a lesser extent, in chicken. However, alternative usage of ATG codons may result in a choice of N-termini or translation of short upstream ORFs in different species. Promoter activity of a fragment upstream of the cap site was shown by transient expression in myoblasts and in vivo following intramuscular injection. It is tissue- and developmentally regulated. Analysis of promoter deletions suggests the existence of negative regulatory elements in the proximal region.
- Published
- 2001
31. Differential seizure-induced and developmental changes of neurexin expression
- Author
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Katarzyna |fLukasiuk, Leszek Kaczmarek, J. Paul Simons, A. Szklarczyk, and Dariusz C. Górecki
- Subjects
Gene isoform ,Male ,Aging ,RNA Splicing ,Neurexin ,Hippocampus ,Gene Expression ,Kainate receptor ,Nerve Tissue Proteins ,Biology ,Cellular and Molecular Neuroscience ,Isomerism ,Seizures ,Animals ,Rats, Wistar ,Molecular Biology ,Messenger RNA ,Kainic Acid ,integumentary system ,Dentate gyrus ,fungi ,Alternative splicing ,Cell Biology ,Rats ,Animals, Newborn ,RNA splicing ,Pentylenetetrazole ,Neuroscience - Abstract
The neurexins are differentially expressed neuronal surface proteins. Each neurexin gene (I, II, and III) has two promoters giving α and β major isoforms, and alternative splicing generates further extensive diversity. Following kainate- and pentylenetetrazole-induced seizures, there were no specific changes of expression of neurexins I and III in rat brains, whereas neurexin II expression increased in the dentate gyrus of the hippocampus. Both major isoforms were induced, particularly neurexin IIα. No significant alteration of neurexin II RNA splicing was observed. During postnatal development, neurexin II expression peaked in 6- to 10-day-old animals, in contrast with that of neurexins I and III; while neurexin IIα expression was elevated, neurexin IIβ expression was constant. The data suggest differential functions of the three neurexins and of their α- and β-isoforms and implicate neurexin IIα in the establishment of functional neuronal circuitry in postnatal brain and activity-dependent changes in adult brain.
- Published
- 1999
32. The Secretory Pathway for Milk Protein Secretion and Its Regulation
- Author
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S. E. Handel, Colin J. Wilde, Mark D. Turner, Allan W. Sudlow, Satish Kumar, J. Paul Simons, David R. Blatchford, and Robert D. Burgoyne
- Subjects
medicine.medical_specialty ,biology ,Lactoferrin ,Mammary gland ,Secretory Vesicle ,Cell biology ,medicine.anatomical_structure ,Endocrinology ,Internal medicine ,Lactation ,Gene expression ,medicine ,biology.protein ,Secretion ,Whey Acidic Protein ,Secretory pathway - Abstract
Following their differentiation in response to lactogenic hormones during pregnancy and after parturition, mammary epithelial cells synthesise and secrete high levels of milk proteins including the caseins, α-lactalbumin, whey acidic protein, lactoferrin and transferrin. During lactation in the mouse, the caseins are by far the major newly synthesised proteins detectable within mammary epithelial cells. The characteristics of protein secretory pathways have been studied intensively in recent years but relatively little work has been carried out on the cell biology of milk protein secretion or its regulation. Milk protein secretion is of interest due to its physiological importance, from the point of view of the study of a high-efficiency secretory pathway and because of increasing interest in the use of transgenic manipulation of mammary gland gene expression to allow modification of milk composition, including the secretion of pharmaceutical proteins. In this chapter we will review what is known about the protein secretory pathway in lactating mammary cells and focus on possible physiological sites of regulation within the secretory pathway based on our studies on isolated lactating mouse mammary acini.
- Published
- 1995
33. Book reviews
- Author
-
J Paul Simons
- Subjects
Genetics ,Genetics (clinical) - Published
- 1996
34. Human Apolipoprotein E Expression from Mouse Skeletal Muscle by Electrotransfer of Nonviral DNA (Plasmid) and Pseudotyped Recombinant Adeno-Associated Virus (AAV27).
- Author
-
Vanessa Evans, Helen Foster, Ian R. Graham, Keith Foster, Takis Athanasopoulos, J. Paul Simons, George Dickson, and James S. Owen
- Published
- 2008
- Full Text
- View/download PDF
35. Lack of RNADNA oligonucleotide (chimeraplast) mutagenic activity in mouse embryos.
- Author
-
Aristides D. Tagalakis, James S. Owen, and J. Paul Simons
- Published
- 2005
- Full Text
- View/download PDF
36. Gene Transfer into Sheep
- Author
-
J. Paul Simons, Ian Wilmut, J O Bishop, Alan Archibald, Richard Lathe, and A. John Clark
- Subjects
Clotting factor ,Genetics ,Transgene ,Genetic transfer ,Biomedical Engineering ,Bioengineering ,Embryo ,Biology ,Applied Microbiology and Biotechnology ,chemistry.chemical_compound ,Tandem repeat ,chemistry ,Molecular Medicine ,Gene ,Microinjection ,DNA ,Biotechnology - Abstract
Gene transfer into animals has considerable potential for livestock improvement. If this potential is to be realized, the ease of generation of transgenic livestock will be of major importance. We report here the production of six transgenic sheep by microinjection of DNA into early embryos (1.2% of embryos transferred). Three different gene constructs were injected and transgenic sheep were obtained with each. The transgenic animals have all incorporated the DNA without detectable rearrangement, and where multiple copies were integrated, they are present in arrays of tandem repeats. Transmission of transferred genes to progeny of three of the sheep has been demonstrated. Five founder transgenic sheep described carry genes designed to direct the production of human clotting factor IX or human αl–antitrypsin in milk. Transgenic animals carrying such genes may ultimately provide a new source of these and other therapeutic proteins.
- Published
- 1988
37. Modification of Milk by Gene Transfer
- Author
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J. Paul Simons
- Subjects
Hybrid gene ,World Wide Web ,Functional analysis ,Cloned genes ,Computer science ,Thymidine kinase ,law ,Recombinant DNA ,Gene transfer ,Computational biology ,Gene ,law.invention - Abstract
Recombinant DNA technology allows the isolation and precise structural characterization of genes. Reintroduction of genes into intact organisms is now possible, allowing functional analysis of cloned genes and of the physiological consequences of expression of cloned genes [18]. In addition, gene transfer offers the possibility of genetic manipulation of livestock, directing changes as opposed to selecting from existing populations [21].
- Published
- 1989
38. Linkage of adult alpha- and beta-globin genes in X. laevis and gene duplication by tetraploidization
- Author
-
Alec J. Jeffreys, Victoria Wilson, David Wood, J. Paul Simons, Robert M. Kay, and Jeffrey G. Williams
- Subjects
Genetic Linkage ,Xenopus ,General Biochemistry, Genetics and Molecular Biology ,Polyploidy ,chemistry.chemical_compound ,Xenopus laevis ,hemic and lymphatic diseases ,biology.animal ,Gene duplication ,Animals ,Globin ,Cloning, Molecular ,Gene ,Sequence (medicine) ,Genetics ,biology ,Base Sequence ,Vertebrate ,DNA ,biology.organism_classification ,Molecular biology ,Biological Evolution ,Globins ,chemistry ,Genes ,Tandem exon duplication - Abstract
We have used cloned adult X. laevis alpha- and beta-globin cDNAs to analyze globin genes in X. laevis DNA. We detected alpha 1- and beta 1-globin genes which contain intervening sequences and code for the major adult globins, plus additional diverged alpha 2- and beta 2-globin genes of unknown coding potential. Unlike the case in mammals, the X. laevis alpha 1- and beta 1-globin genes are closely linked and occur in the sequence 5'-alpha 1-9 kb-beta 1-3'. The alpha 2- and beta 2-globin genes are also linked, and analysis of globin genes in X. tropicalis suggests that this duplication of an alpha-beta-globin gene pair in X. laevis is the result of chromosome duplication by tetraploidization. The close linkage of alpha- and beta-globin genes in Xenopus provides evidence that vertebrate alpha- and beta-globin genes evolved by tandem duplication of a single primordial globin gene.
- Published
- 1980
39. Transgenic Techniques in Mice: a Video Guide. By Roger A. Pedersen and Janet Rossant. New York: Cold Spring Harbor Laboratory. 1988. Approximately 1 hour long. Available in VHS, BETA. PAL, NTSC and SECAN Formats. Price $170.00
- Author
-
Rayal-Shawi and J. Paul Simons
- Subjects
Horticulture ,PAL ,Genetics ,General Medicine ,Spring (mathematics) ,Biology ,Beta (finance) - Published
- 1989
40. Erratum
- Author
-
J. Paul Simons, Ian Wilmut, A. John Clark, Alan L. Archibald, John O. Bishop, and Richard Lathe
- Subjects
Biomedical Engineering ,Molecular Medicine ,Bioengineering ,Applied Microbiology and Biotechnology ,Biotechnology - Published
- 1988
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