79 results on '"J. P. O'Neill"'
Search Results
2. Defect observations in GaN MQW structures
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A. G. Cullis, Peter J. Parbrook, D A Wood, and J. P. O’Neill
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Materials science - Published
- 2018
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3. Nano-clustering anomalies in InGaN/GaN multiple quantum well structures
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A. G. Cullis, Tao Wang, Peter J. Parbrook, J. P. O’Neill, and Ian M. Ross
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Materials science ,business.industry ,Multiple quantum ,Nano ,Optoelectronics ,Cluster analysis ,business - Published
- 2018
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4. Electromagnetic Measurement of and Location of Lightning
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C. E. Baum, J. P. O’Neill, E. L. Breen, D. L. Hall, and C. B. Moore
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- 2017
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5. Major otology day case surgery: viable, cost efficient and safe
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B. Conlon, J. P. O’Neill, and O. Young
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Adult ,Male ,Waiting time ,medicine.medical_specialty ,Adolescent ,Waiting Lists ,Specialty ,Context (language use) ,Patient Readmission ,Young Adult ,Otology ,medicine ,Humans ,Prospective Studies ,Day case surgery ,Ear Diseases ,Prospective cohort study ,business.industry ,General surgery ,General Medicine ,Middle Aged ,Readmission rate ,Patient Discharge ,Surgery ,Ambulatory Surgical Procedures ,Referral center ,Female ,Otologic Surgical Procedures ,business - Abstract
There has been no study or institution in Ireland promoting major ear surgery performed as a day case procedure in adults. At present, there is a strong political and financial drive for increased elective day case surgery and also a public responsibility to reduce surgical waiting times. A prospective study of 43-day case otology patients who underwent major otological surgeries over an 18-month period in a tertiary referral center. We recorded morbidity, readmission rates and assessed the relationships between procedures performed and complications observed. We report a same day discharge rate of 88.4% with a next day readmission rate of 2.3%. We report no major morbidities and found no association between the otological procedure performed and complications observed. Furthermore, there was no statistical association between age and complications observed. We have reduced our waiting list from 9 months to 4 weeks over the 18-month period. Major day case otology surgery is an acceptable alternative to an inpatient procedure with favorable discharge rates in comparison to the UK results. Day surgery in this context is safe, cost efficient and expands the surgical possibilities within our department and specialty.
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- 2011
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6. Serum Mannose‐Binding Lectin Deficiency Is Associated with Cryptosporidiosis in Young Haitian Children
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J. P. O'Neill, Catherine J. Larsson, Patricia De Matteis Rouzier, Cheryl Powden, Beth D. Kirkpatrick, Christopher D. Huston, Gyrlande Bois, Denisa D. Wagner, Jean W. Pape, W. K. Alston, Cynthia L. Sears, Francine Noel, and Katherine M. Tenney
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Male ,Microbiology (medical) ,Cryptosporidium infection ,Cryptosporidiosis ,chemical and pharmacologic phenomena ,Mannose-Binding Lectin ,Humans ,Medicine ,Mannan-binding lectin ,Innate immune system ,biology ,business.industry ,Infant ,Cryptosporidium ,Odds ratio ,bacterial infections and mycoses ,medicine.disease ,MBL deficiency ,biology.organism_classification ,Haiti ,Immunity, Innate ,Malnutrition ,Diarrhea ,Infectious Diseases ,Case-Control Studies ,Immunology ,Female ,Disease Susceptibility ,medicine.symptom ,business - Abstract
BACKGROUND Mannose-binding lectin (MBL) is a component of the innate immune response and binds microbial surfaces through carbohydrate recognition domains. MBL deficiency may contribute to susceptibility to a variety of infectious diseases, particularly in young children. MBL binds to the Cryptosporidium sporozoite and may be important in resistance to cryptosporidiosis. METHODS We studied the association of serum MBL levels and cryptosporidiosis in a case-control study of young Haitian children with cryptosporidiosis versus children who were control subjects. RESULTS Ninety-nine children were enrolled, as follows: 49 children with cryptosporidiosis, 41 healthy controls, and 9 children with diarrhea from other causes. Case children were more malnourished than controls, and 49% had persistent or chronic diarrhea. At enrollment, mean serum MBL levels were markedly lower in children with cryptosporidiosis (P = .002), as was the number of children with an MBL deficiency of < or = 70 ng/mL (P = .005). In multivariate analysis, the association of cryptosporidiosis and MBL deficiency persisted (P = .002; adjusted odds ratio, 22.4), as did the association of cryptosporidiosis with general malnutrition. The subset of children with cryptosporidiosis and MBL deficiency were more likely to be male (P = .025). CONCLUSIONS MBL may be an important component of innate immune protection against Cryptosporidium infection in young children. Additional studies are necessary to determine whether MBL intestinal losses, deficient epithelial expression, and/or genetic polymorphisms in the MBL gene contribute to MBL deficiency in cryptosporidiosis and other enteric infections in young children.
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- 2006
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7. The Spectrum of Mutations Causing HPRT Deficiency: An Update
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J. P. O'Neill, James C. Harris, William L. Nyhan, and Hyder A. Jinnah
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Genetics ,Hypoxanthine Phosphoribosyltransferase ,Genotype ,Lesch-Nyhan Syndrome ,Enzyme function ,biology ,Chemistry ,Syndrome ,General Medicine ,Disease ,Biochemistry ,Phenotype ,Databases as Topic ,Hypoxanthine-guanine phosphoribosyltransferase ,Mutation ,HPRT DEFICIENCY ,biology.protein ,Humans ,Molecular Medicine ,Phosphoribosyltransferase ,Gene ,Motor disability - Abstract
Mutations in the gene encoding hypoxanthine-guanine phosphoribosyltransferase (HPRT) cause Lesch-Nyhan disease, which is characterized by hyperuricemia, severe motor disability, and self-injurious behavior. Mutations in the same gene also cause less severe clinical phenotypes with only some portions of the full syndrome. A large database of 271 mutations associated with both full and partial clinical phenotypes was recently compiled. Since the original database was assembled, 31 additional mutations have been identified, bringing the new total to 302. The results demonstrate a very heterogeneous collection of mutations for both LND and its partial syndromes. The differences between LND and the partial phenotypes cannot be explained by differences in the locations of mutations, but the partial phenotypes are more likely to have mutations predicted to allow some residual enzyme function. The reasons for some apparent exceptions to this proposal are addressed.
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- 2004
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8. Optical Characterisation of AlGaN Epitaxial Layers and GaN/AlGaN Quantum Wells
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S.T. Pendlebury, Peter J. Parbrook, M. S. Skolnick, D. J. Mowbray, J. P. O’Neill, A. G. Cullis, D. A. Wood, P. Lynam, and M. Lada
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Photoluminescence ,business.industry ,Chemistry ,Condensed Matter Physics ,Epitaxy ,Electronic, Optical and Magnetic Materials ,Optics ,Sapphire ,Optoelectronics ,Photoluminescence excitation ,Metalorganic vapour phase epitaxy ,business ,Spectroscopy ,Absorption (electromagnetic radiation) ,Quantum well - Abstract
We report optical characterisation of AlGaN epitaxial layers and GaN/AIGaN quantum wells, grown by metalorganic vapour phase epitaxy on sapphire substrates. A combination of emission (photoluminescence) and absorption (photoluminescence excitation) spectroscopy provides information on the nature of the electronic states and on built-in electric fields resulting from piezoelectric and spontaneous polarisation effects. These fields are found to be considerably smaller than in previously reported work on similar structures.
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- 2001
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9. Electron-beam-induced segregation in InGaN/GaN multiple-quantum wells
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A. G. Cullis, Ian M. Ross, Peter J. Parbrook, J. P. O’Neill, and Tao Wang
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Materials science ,Physics and Astronomy (miscellaneous) ,business.industry ,Scanning electron microscope ,Wide-bandgap semiconductor ,chemistry.chemical_element ,Condensed Matter::Materials Science ,Semiconductor ,Optics ,chemistry ,Transmission electron microscopy ,Scanning transmission electron microscopy ,Optoelectronics ,Irradiation ,business ,Indium ,Quantum well - Abstract
We report a study of the morphology and composition of InxGa1−xN/GaN multiple-quantum-well structures and their sensitivity to electron-beam damage. We have employed high-resolution transmission electron microscopy, energy dispersive x-ray analysis, and scanning transmission electron microscopy. Microstructural analysis was performed to investigate the dynamical effects of electron-beam irradiation on the relative indium distribution within the quantum wells. Exposure to relatively low incident beam illumination, corresponding to current densities at the specimen of ∼100 pA/cm2, was found to induce significant nanoclustering of indium within the multiple-quantum wells. These findings highlight the need for caution when reporting the presence of indium-rich clusters within InGaN/GaN multiple-quantum wells studied in the transmission electron microscope.
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- 2003
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10. Carcinogen—DNA adducts and gene mutation in foundry workers with low-level exposure to polycyclic aromatic hydrocarbons
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K. Savela, R. R. Perera, Regina M. Santella, Wei-Yann Tsai, J. P. O'neill, K. Hemminki, LaVerne A. Mooney, R. J. Albertini, Ruth Ottman, and Chris Dickey
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Adult ,Male ,Hypoxanthine Phosphoribosyltransferase ,Cancer Research ,Guanine ,Iron ,Lymphocyte ,7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide ,Gene mutation ,Biology ,Risk Assessment ,Cohort Studies ,DNA Adducts ,chemistry.chemical_compound ,Occupational Exposure ,Benzo(a)pyrene ,medicine ,Humans ,Polycyclic Compounds ,Lymphocytes ,Mutation frequency ,Finland ,Carcinogen ,Hypoxanthine ,Aged ,Genetics ,Smoking ,DNA ,General Medicine ,Low level exposure ,Middle Aged ,Molecular biology ,medicine.anatomical_structure ,Genes ,chemistry ,Mutagenesis ,Hypoxanthine-guanine phosphoribosyltransferase ,Metallurgy ,Female ,Biomarkers ,DNA Damage - Abstract
Carcinogen-DNA adducts and somatic gene mutation at the hypoxanthine guanine phosphoribosyl transferase (HPRT) locus were evaluated in peripheral leukocytes of workers in an iron foundry with exposure to benzo[a]pyrene (B[a]P) and other polycyclic aromatic hydrocarbons (PAHs). During the two year study period, B[a]P exposure declined by approximately 40%, from a maximum of 60 ng/m3 in the first year to < 36 ng/m3 1 year later. A total of 64 persons were sampled in November/December of the two successive study years; 24 of them gave two samples one year apart. The biomarkers included carcinogen-DNA adducts in leukocytes (PAH-DNA measured by an immunoassay, aromatic-DNA by the 32P-postlabeling method) and HPRT mutation in lymphocytes. After adjusting for smoking, levels of PAH-DNA, aromatic-DNA and HPRT mutation frequency (Mf) increased with exposure among the 64 workers sampled during the 2 year period (P < or = 0.05). However, the markers showed a differential response to the change in exposure, consistent with their individual biology. For example, among the 24 workers sampled in both years, carcinogen-DNA adducts (which have a half-life on the order of several months) were markedly reduced from the first to the second year (PAH-DNA, 6.2 versus 2.3/10(8); aromatic-DNA, 2.5 versus 1.4/(8); P < 0.01). HPRT Mf (a longer-lived marker) was somewhat less affected by the decline in exposure (1.3 versus 0.8, P < or = 0.05). Moreover, in the second year several long-term workers had low levels of adducts, but elevated HPRT Mf. Thus, PAH-DNA and HPRT Mf were highly correlated in the first year (n = 17; r = 0.67; P < 0.01), but not in the second year or in the two years combined. However, when analysis was restricted to workers with detectable levels of adducts (who included the more highly exposed workers) the correlation was significant between PAH-DNA and HPRT (n = 17; r = 0.65; P = 0.005). In contrast, aromatic-DNA adducts and HPRT were not correlated in either year. These results suggest a molecular link between somatic gene mutation and PAHs; and they highlight the need in such molecular epidemiologic studies to consider the varying lifetimes of the individual markers.
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- 1994
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11. HPRT and glycophorin A mutations in foundry workers: relationship to PAH exposure and to PAH-DNA adducts
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Wei-Yann Tsai, Ruth Ottman, J. P. O'neill, F.P. Perera, Regina M. Santella, Kari Hemminki, Deliang Tang, K. Savela, Chris Dickey, W. L. Bigbee, LaVerne A. Mooney, and R. J. Albertini
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Adult ,Male ,Hypoxanthine Phosphoribosyltransferase ,Cancer Research ,Guanine ,Iron ,Mutant ,medicine.disease_cause ,Cohort Studies ,chemistry.chemical_compound ,Occupational Exposure ,Gene duplication ,Leukocytes ,medicine ,Humans ,Glycophorin ,Polycyclic Compounds ,Glycophorins ,Carcinogen ,Hypoxanthine ,Mutation ,biology ,DNA ,General Medicine ,Middle Aged ,Molecular biology ,Biochemistry ,chemistry ,Mutagenesis ,Hypoxanthine-guanine phosphoribosyltransferase ,biology.protein ,Female - Abstract
Mutations were evaluated in workers in an iron foundry with exposure to polycyclic aromatic hydrocarbons (PAHs), measured by personal and area monitoring, ranging from < 5 to 60 ng/m3 of benzo[a]pyrene (B[a]P). Mutation at the hypoxanthine guanine phosphoribosyl transferase (HPRT) and glycophorin A (GPA) loci (measures of molecular effect in lymphocytes and erythrocytes respectively) were assessed to demonstrate their relationship to external exposure at lower levels than previously analyzed in foundry workers at this plant (< 50-200 ng/m3). The relationship between mutations and PAH-DNA adducts measured by immunoassay (as a measure of the biologically effective dose) was also investigated. The markers were analyzed for dose-response and interindividual variability. Workers were classified into three exposure categories (low, medium and high). PAH-DNA adduct values for the low, medium and high exposure groups were 5.19, 6.10 and 9.57 x 10(-8) nucleotides respectively (r = 0.28; P = 0.08). HPRT mutant frequencies (adjusted for age and cloning efficiency) for the low, medium and high exposure groups were 1.04, 1.13 and 1.82 x 10(-6) cells respectively and demonstrated an upward trend with increasing exposure that was of borderline significance (r = 0.46, P = 0.06). In contrast, HPRT mutations were highly correlated with PAH-DNA adducts (r = 0.67; P = 0.004). Interindividual variability in mutant frequencies ranged from 1.5- to 4.5-fold within the three exposure categories. With respect to GPA variants, NN frequency (Vf) in erythrocytes (which reflects chromosomal loss and duplication, recombination or gene conversion) was not positively correlated with PAH exposure. The level of N0 Vf (arising from small-scale structural mutations in the GPA gene or from larger-scale chromosomal rearrangements or deletions) increased slightly, but not significantly, over the three exposure groups from 8.2 to 10.7 to 11.8/10(6) cells (P = 0.32). Interindividual variation in GPA NN Vf ranged from 2- to 18-fold and in GPA N0 from 4- to 5-fold. NN and N0 Vf were highly correlated (P = 0.001) but no correlation was seen between GPA and HPRT or between GPA and PAH-DNA adducts. Thus, the most interesting and novel finding is that, even at relatively low exposures to PAH, HPRT mutations were increased in parallel with PAH-DNA adducts. The observed association between PAH-DNA adducts and HPRT gene mutation in humans is consistent with experimental data for PAHs. These results support the use of both biomonitoring and personal ambient monitoring in further molecular epidemiology studies.
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- 1993
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12. Prospective, blinded trial of whole-body magnetic resonance imaging versus computed tomography positron emission tomography in staging primary and recurrent cancer of the head and neck
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J P O'Neill, T. P. O’Dwyer, M Moynagh, and E Kavanagh
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Adult ,Male ,medicine.medical_specialty ,Concordance ,Biopsy ,Metastasis ,Young Adult ,Fluorodeoxyglucose F18 ,Predictive Value of Tests ,medicine ,Humans ,Whole Body Imaging ,Prospective Studies ,Prospective cohort study ,Aged ,Neoplasm Staging ,Aged, 80 and over ,medicine.diagnostic_test ,business.industry ,Head and neck cancer ,Cancer ,Magnetic resonance imaging ,General Medicine ,Middle Aged ,medicine.disease ,Magnetic Resonance Imaging ,Otorhinolaryngology ,Positron emission tomography ,Head and Neck Neoplasms ,Predictive value of tests ,Positron-Emission Tomography ,Female ,Radiology ,Neoplasm Recurrence, Local ,Radiopharmaceuticals ,business ,Nuclear medicine - Abstract
Objectives:To compare the use of computed tomography – positron emission tomography and whole-body magnetic resonance imaging for the staging of head and neck cancer.Patients and methods:From January to July 2009, 15 consecutive head and neck cancer patients (11 men and four women; mean age 59 years; age range 19 to 81 years) underwent computed tomography – positron emission tomography and whole-body magnetic resonance imaging for pre-therapeutic evaluation. All scans were staged, as per the American Joint Committee on Cancer tumour–node–metastasis classification, by two blinded consultant radiologists, in two sittings. Diagnoses were confirmed by histopathological examination of endoscopic biopsies, and in some cases whole surgical specimens.Results:Tumour staging showed a 74 per cent concordance, node staging an 80 per cent concordance and metastasis staging a 100 per cent concordance, comparing the two imaging modalities.Conclusion:This study found radiological staging discordance between the two imaging modalities. Whole-body magnetic resonance imaging is an emerging staging modality with superior visualisation of metastatic disease, which does not require exposure to ionising radiation.
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- 2010
13. Oncogenic impact of human papilloma virus in head and neck cancer
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C B Heffernan, J P O'Neill, and C Timon
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Oncology ,Adult ,Male ,medicine.medical_specialty ,Pathology ,Adolescent ,Sexual Behavior ,Uterine Cervical Neoplasms ,Risk Factors ,Internal medicine ,medicine ,Prevalence ,Humans ,Papillomavirus Vaccines ,Child ,Cervical cancer ,Human papillomavirus 16 ,Mucous Membrane ,Human papillomavirus 18 ,business.industry ,Head and neck cancer ,Papillomavirus Infections ,Cancer ,General Medicine ,Sexually Transmitted Diseases, Viral ,medicine.disease ,Head and neck squamous-cell carcinoma ,Squamous carcinoma ,Oropharyngeal Neoplasms ,Otorhinolaryngology ,Epidermoid carcinoma ,Carcinoma, Squamous Cell ,Papilloma ,Female ,business ,Oncovirus - Abstract
There is considerable debate within the literature about the significance of human papilloma virus in head and neck squamous cell carcinoma, and its potential influence on the prevention, diagnosis, grading, treatment and prognosis of these cancers. Cigarette smoking and alcohol consumption have traditionally been cited as the main risk factors for head and neck cancers. However, human papilloma virus, normally associated with cervical and other genital carcinomas, has emerged as a possible key aetiological factor in head and neck squamous cell carcinoma, especially oropharyngeal cancers. These cancers pose a significant financial burden on health resources and are increasing in incidence. The recent introduction of vaccines targeted against human papilloma virus types 16 and 18, to prevent cervical cancer, has highlighted the need for ongoing research into the importance of human papilloma virus in head and neck squamous cell carcinoma.
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- 2010
14. Papillary type thyroid carcinoma in an ovarian struma
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J. P. O’Neill, P. Burns, and John Kinsella
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Adult ,endocrine system ,medicine.medical_specialty ,Pathology ,endocrine system diseases ,Malignant transformation ,Thyroid carcinoma ,Neoplasms, Multiple Primary ,Young Adult ,Internal medicine ,Medicine ,Humans ,Thyroid Neoplasms ,Ovarian Neoplasms ,Struma ovarii ,business.industry ,Thyroid ,General Medicine ,medicine.disease ,Carcinoma, Papillary ,Struma Ovarii ,medicine.anatomical_structure ,Endocrinology ,Female ,Teratoma ,business - Abstract
Struma Ovarii are mature teratomas. In rare circumstances thyroid tissue is found as part of the histopathological makeup. Malignant transformation may occur in 1-2% of these rare cases.To report a rare case of malignant thyroid carcinoma within a struma ovarii.A 22-year-old lady presented with a right pelvic mass. A right-sided laparoscopic salpingo-oophrectomy was performed which revealed a malignant struma ovarii neoplasm. A total thyroidectomy was performed with adjuvant I(131) therapy.This is a rare tumour which necessitates surgical extirpation and removal of a normal thyroid gland to facilitate thyroglobulin monitoring.
- Published
- 2009
15. Melanin photosensitizes ultraviolet light (uvc) dna damage in pigmented cells
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Christine A. Huselton, Helene Z. Hill, and J. P. O'Neill
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Ultraviolet Rays ,Epidemiology ,DNA damage ,Health, Toxicology and Mutagenesis ,Pyrimidine dimer ,In Vitro Techniques ,Mass Spectrometry ,Melanin ,Mice ,chemistry.chemical_compound ,Tumor Cells, Cultured ,Ultraviolet light ,medicine ,Animals ,Melanoma ,Genetics (clinical) ,Melanins ,integumentary system ,Chemistry ,DNA ,medicine.disease ,Thymine ,Biochemistry ,Pyrimidine Dimers ,Photoprotection ,DNA Damage - Abstract
Melanins, pigments of photoprotection and camouflage, are very photoreactive and can both absorb and emit active oxygen species. Nevertheless, black skinned individuals rarely develop skin cancer and melanin is assumed to act as a solar screen. Since DNA is the target for solar carcinogenesis, the effect of melanin on Ultraviolet (UV)-induced thymine lesions was examined in mouse melanoma and carcinoma cells that varied in melanin content. Cells prelabeled with 14C-dThd were irradiated with UVC; DNA was isolated, purified, degraded to bases by acid hydrolysis and analyzed by HPLC. Thymine dimers were detected in all of the extracts of irradiated cells. Melanotic and hypomelanotic but not mammary carcinoma cell DNA from irradiated cells contained hydrophilic thymine derivatives. The quantity of these damaged bases was a function of both the UVC dose and the cellular melanin content. One such derivative was identified by gas chromatography-mass spectroscopy as thymine glycol. The other appears to be derived from thymine glycol by further oxidation during acid hydrolysis of the DNA. The finding of oxidative DNA damage in melanin-containing cells suggests that melanin may be implicated in the etiology of caucasian skin cancer, particularly melanoma. Furthermore, the projected decrease in stratospheric ozone could impact in an unanticipated deleterious manner on dark-skinned individuals.
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- 1990
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16. Controversies in the management of tongue base cancer
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J. P. O’Neill, John E. Fenton, J. P. Hughes, and K. Manning
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Adult ,Aged, 80 and over ,Male ,medicine.medical_specialty ,business.industry ,medicine.medical_treatment ,General surgery ,Cancer ,General Medicine ,Disease ,Middle Aged ,medicine.disease ,Tongue Base ,Dissent and Disputes ,Magnetic Resonance Imaging ,Surgery ,Tongue Neoplasms ,Radiation therapy ,medicine ,Humans ,Female ,Head and neck ,business ,Ireland ,Aged - Abstract
Tongue base cancer is one of the most lethal head and neck cancers. There is considerable controversy in the management of this disease with wide variation of opinion within the literature.We discuss the presentation, diagnostic and therapeutic strategies which exist in the literature. Articles were reviewed from 1970 to 2007 within the Medline, Pubmed and Cochrane libraries.Smokers with a history of persistent unilateral neck pain, even in the absence of clinical signs warrant MRI neck imaging. Tongue base cancer organ preservation therapeutic strategies, radiation and concomitant platinum based chemotherapy, currently optimise oncologic and quality of life outcomes.
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- 2007
17. Hypoxanthine-guanine phosphoribosyltransferase deficiency: biochemical and molecular findings in six Argentine patients
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J. P. O'Neill, M. Randall, Laura E. Laróvere, R. Dodelson de Kremer, Norberto Guelbert, L. Czornyj, and Lynette D. Fairbanks
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congenital, hereditary, and neonatal diseases and abnormalities ,medicine.medical_specialty ,Hypoxanthine Phosphoribosyltransferase ,Lesch-Nyhan Syndrome ,DNA Mutational Analysis ,Argentina ,Hyperuricemia ,Biology ,Biochemistry ,chemistry.chemical_compound ,Internal medicine ,Genetics ,medicine ,Humans ,Purine metabolism ,Transversion ,Codon ,Hypoxanthine ,Germ-Line Mutation ,Family Health ,nutritional and metabolic diseases ,General Medicine ,Exons ,Xanthine ,medicine.disease ,Endocrinology ,Phenotype ,chemistry ,Hypoxanthine-guanine phosphoribosyltransferase ,Mutation ,biology.protein ,Molecular Medicine ,Uric acid ,Phosphoribosyltransferase ,Nervous System Diseases ,Metabolism, Inborn Errors - Abstract
Hypoxanthine-guanine phosphoribosyltransferase (HPRT) deficiency is an inborn error of purine metabolism responsible for Lesch-Nyhan Disease (LND) and its partial phenotypes, HPRT-related hyperuricemia with neurologic dysfunction (HRND) and hyperuricemia alone. We report here the recognition of six Argentine patients, two with LND and four with HRND. All patients presented elevated excretion of uric acid, hypoxanthine, and xanthine and decreased HPRT enzyme activities1 nmol/h/mg Hb. The molecular analysis demonstrated in the two LND patients a novel inherited transition mutation, c.203TC (L68P), in one subject and a germline transition mutation, c.209GA (G70E), in the other. In the HRND patients a novel transversion mutation, c.584 AC (Y195S), was found in three related patients and an inherited transition mutation, c.143GA (R48H), in the fourth subject.
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- 2007
18. Microfabrication of 3D terahertz circuitry
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Geoff Mcbride, P. de Maagt, R. Edeson, David Brian Haskett, Derel Jenkins, Inigo Ederra, Luisa Deias, Chris Mann, J. P. O’Neill, J.T. Vallinas, Alec John Mccalden, Dario Calogero Castiglione, Alexandre Vincent Samuel Bernard Laisne, Marc Ferlet, F. van de Water, Alfred A Zinn, and Electromagnetics
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Surface micromachining ,Machining ,Computer science ,Terahertz radiation ,Circuit design ,Photonic integrated circuit ,Hardware_INTEGRATEDCIRCUITS ,Electronic engineering ,Deep reactive-ion etching ,Photonic crystal ,Microfabrication - Abstract
Advances in micro-fabrication techniques combined with accurate simulation tools has provided the means for the realisation of complex terahertz circuitry. Silicon micro-machining provides the way forward to fabricate accurate rugged structures. Multi-level deep reactive ion etching can be used to replace traditional machining methods achieving smaller feature size, improved surface finish and greater freedom in circuit layout. Photonic Bandgap waveguides enable three dimensional arrangements of active devices antennae and filters, and removes the requirement for metallisation of adjoining surfaces. This paper describes some of the state of the art terahertz circuit design and realisation using these techniques.
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- 2003
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19. Mutations in the hypoxanthine-guanine phosphoribosyltransferase gene in Spanish HPRT deficient families
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R J, Torres, F A, Mateos, J, Molano, B S, Gathoff, J P, O'Neill, R M, Gundel, L, Trombley, and J G, Puig
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Hypoxanthine Phosphoribosyltransferase ,Purine-Pyrimidine Metabolism, Inborn Errors ,Spain ,Mutation ,Humans ,Female - Published
- 2002
20. Gestational age and gender-specific in utero V(D)J recombinase-mediated deletions
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M, Yoshioka, J P, O'Neill, P M, Vacek, and B A, Finette
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Male ,Hypoxanthine Phosphoribosyltransferase ,Base Sequence ,T-Lymphocytes ,DNA Mutational Analysis ,Molecular Sequence Data ,Infant, Newborn ,Chromosome Breakage ,Gestational Age ,Fetal Blood ,Logistic Models ,Sex Factors ,DNA Nucleotidyltransferases ,Mutation ,Humans ,Female ,VDJ Recombinases ,Gene Deletion ,Infant, Premature - Abstract
Recent studies have brought to the forefront the importance of somatic mutations during human fetal development and malignant transformation in children, specifically leukemia. Therefore, a better understanding of the frequency and mutational spectrum of spontaneous in utero mutations is essential for understanding the genetic mechanisms associated with pediatric malignancies. Previously we reported that the frequency of somatic mutations during the late stages of fetal development was dependent on both gestational age and gender. Here we present the hypoxanthine-guanine phosphoribosyltransferase (HPRT) reporter gene mutational spectra analysis for 60 T-cell mutant isolates from the umbilical cord blood of preterm newborns to gain insight into background mutational events during the late stages of fetal development. Logistic regression analyses showed a significant increase in HPRT deletions mediated by V(D)J recombinase in preterm newborns compared with full-term newborns (P = 0.009). A comparative analysis of deletion mutations also revealed that V(D)J recombinase-mediated HPRT deletions increased with decreasing gestational age (P = 0.012) and were significantly higher in females than males of the same developmental status (P = 0.031). Developmental and gender-specific differences in HPRT deletions mediated by V(D)J recombinase provide insight into the gender-specific differences seen in infant leukemia.
- Published
- 2001
21. hprt mutant frequencies, nonpulmonary malignancies, and domestic radon exposure: 'postmortem' analysis of an interesting hypothesis
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A J, Ruttenber, L T, Harrison, A, Baron, D, McClure, J, Glanz, R, Quillin, J P, O'Neill, L, Sullivan, J, Campbell, and J A, Nicklas
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Male ,Hypoxanthine Phosphoribosyltransferase ,Colorado ,Models, Statistical ,Adolescent ,Environmental Exposure ,Causality ,Radon ,Research Design ,Data Interpretation, Statistical ,Neoplasms ,Mutation ,Linear Models ,Humans ,Female ,Biomarkers - Abstract
The hypothesis that exposure to domestic radon raises the risk for leukemia and other nonpulmonary cancers has been proposed and tested in a number of epidemiologic studies over the past decade. During this period, interest in this hypothesis was heightened by evidence of increased frequencies of mutations at the hypoxanthine guanine phosphoribosyl transferase (hprt) gene in persons exposed to domestic radon (Bridges BA et al. [1991]: Lancet 337:1187-1189). An extension of this study (Cole J et al. [lsqb[1996]: Radiat Res 145:61-69) and two independent studies (Albering HJ et al. [1992[: Lancet 340:739; Albering HJ et al. [1994[: Lancet 344:750-751) found that hprt mutant frequency was not correlated with domestic radon exposure, and two well-designed epidemiologic studies showed no evidence of a relation between radon exposure and leukemia in children or adults. In this report, we present additional data from a study of Colorado high school students showing no correlation between domestic radon exposure and hprt mutant frequency. We use reanalyses of previous studies of radon and hprt mutant frequency to identify problems with this assay as a biomarker for domestic radon exposure and to illustrate difficulties in interpreting the statistical data. We also show with analyses of combined data sets that there is no support for the hypothesis that domestic radon exposure elevates hprt mutant frequency. Taken together, the scientific evidence provides a useful example of the problems associated with analyzing and interpreting data that link environmental exposures, biomarkers, and diseases in epidemiologic studies.
- Published
- 2001
22. Molecular basis of hypoxanthine-guanine phosphoribosyltransferase deficiency in thirteen Spanish families
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R J, Torres, F A, Mateos, J, Molano, B S, Gathoff, J P, O'Neill, R M, Gundel, L, Trombley, and J G, Puig
- Subjects
Hypoxanthine Phosphoribosyltransferase ,Lesch-Nyhan Syndrome ,Genetic Carrier Screening ,Exons ,Alternative Splicing ,Mutagenesis, Insertional ,Pregnancy ,Spain ,Prenatal Diagnosis ,Humans ,Point Mutation ,Female ,Frameshift Mutation ,Sequence Deletion - Abstract
We have determined the molecular basis of hypoxanthine-guanine phosphoribosyltransferase (HPRT; HPRT1) deficiency in eight Lesch-Nyhan patients and in five partially HPRT deficient patients with mild to severe neurologic symptoms. Eight of these thirteen mutations have not been previously described. HPRT Zaragoza II (a GG insertion in exon 2), HPRT Murcia (an AG deletion in exon 4), HPRT Asturias (a A deletion in exon 4) and HPRT Cartagena (a A insertion in exon 6) cause a frame-shift resulting in a premature stop codon. HPRT Sevilla is a splice-site mutation resulting in exon 8 skipping in the HPRT mRNA. HPRT Huelva, Madrid II and Zaragoza I are point mutations that result in single amino-acid changes in the mutated HPRT protein (118G--A, G40R; 143G--A, R 48 H; 397G--A, V133 M, respectively). Three mutations have been previously described in unrelated families, and two mutations have been already published. All mutations that resulted in truncated proteins corresponded to patients with the Lesch-Nyhan phenotype. Characterization of the HPRT mutation allowed us to make carrier detection in 33 women and prenatal diagnosis in two fetuses. Hum Mutat 15:383, 2000.
- Published
- 2000
23. Transition mutations at CpG dinucleotides are the most frequent in vivo spontaneous single-based substitution mutation in the human HPRT gene
- Author
-
J P, O'Neill and B A, Finette
- Subjects
Adult ,Male ,Cytosine ,Hypoxanthine Phosphoribosyltransferase ,Lesch-Nyhan Syndrome ,DNA Mutational Analysis ,5-Methylcytosine ,Infant, Newborn ,Humans ,Point Mutation ,CpG Islands ,Female ,Child - Published
- 1998
24. Nutritional folate deficiency augments the in vivo mutagenic and lymphocytotoxic activities of alkylating agents
- Author
-
R F, Branda, M, Hacker, A, Lafayette, E, Nigels, L, Sullivan, J A, Nicklas, and J P, O'Neill
- Subjects
Male ,Alkylating Agents ,Hypoxanthine Phosphoribosyltransferase ,Mutagenicity Tests ,Ethylnitrosourea ,T-Lymphocytes ,Animals ,Folic Acid Deficiency ,Cyclophosphamide ,Rats, Inbred F344 ,Mutagens ,Rats - Abstract
To investigate the interaction of folate deficiency and alkylating agents in vivo, weanling Fischer 344 rats were maintained for 5 weeks on a folate replete, moderately folate deficient, or a severely folate deficient diet. Mutant frequencies at the HPRT locus in splenic lymphocytes were 1.2+/-0.6, 1.9+/-1.1, and 6.4+/-4.0 x 10(-6), respectively (P0.01). N-nitroso-N-ethylurea (ENU), 100 mg/kg body weight, was much more mutagenic with progressive folate deficiency (5.0+/-2.4 vs. 16.2+/-7.3 vs. 39.2+/-21.0 x 10(-6)), suggesting a synergistic interaction (P0.01). Neither moderate nor severe folate deficiency significantly enhanced the mutagenic effects of cyclophosphamide, 50 mg/kg body weight (18.0+/-7.9 vs. 6.0+/-2.8 vs. 28.5+/-28.2 x 10(-6)). The number of cloning cells/ spleen were reduced 68% in moderately folate deficient rats and by 87% in severely deficient animals (P0.05). The combination of folate deficiency and cyclophosphamide reduced the total number of cloning cells further, but ENU alone, or in combination with folate deficiency, did not. These findings indicate that folate deficiency increases the risk of somatic mutations and is lymphocytotoxic in rats. Folate deficiency enhances the mutagenic but not the lymphotoxic effects of ENU, while it increases the lymphotoxic but not the mutagenic activity of cyclophosphamide. Correction of folate deficiency may decrease the immunologic and genetic damage caused by some alkylating agents.
- Published
- 1998
25. Radiation quality affects the efficiency of induction and the molecular spectrum of HPRT mutations in human T cells
- Author
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R J, Albertini, L S, Clark, J A, Nicklas, J P, O'Neill, T E, Hui, and R, Jostes
- Subjects
Hypoxanthine Phosphoribosyltransferase ,Cell Survival ,T-Lymphocytes ,Cell Cycle ,Dose-Response Relationship, Radiation ,Radiotherapy Dosage ,Radiation Dosage ,Plutonium ,Occupational Diseases ,Cesium Radioisotopes ,Gamma Rays ,Radon ,Mutation ,Humans ,Linear Energy Transfer ,Biomarkers ,Cells, Cultured - Abstract
Human T lymphocytes can be used to determine the frequency and molecular spectrum of somatic cell gene mutations induced by ionizing radiations both in vivo and in vitro. In vitro exposure of these G0 cells to low-LET 137Cs gamma rays results in the induction of HPRT mutations and a predominant molecular spectrum of DNA deletions and rearrangements, particularly total gene deletions (11-12%). Similar results are found in samples from humans exposed to low-LET radiation from 131I. The doubling dose for mutation induction is calculated to be 0.8 and 1.0 Gy from these exposures performed in vitro and in vivo, respectively. In vitro studies of the effects of high-LET radiation from exposure to 222Rn also showed an induction of HPRT mutations, with a doubling dose of approximately 0.2 Gy. With this radiation, the predominant mutations were small partial deletions, with less than 2% total gene deletions. Studies of humans exposed to high-LET radiation from 239Pu showed an increased HPRT mutant frequency for the group, although no significant dosimetry could be defined. In contrast to the humans exposed to 131I, no increase in the frequency of total gene deletions was found. This is consistent with the results for 222Rn in vitro. The available data show that radiation quality affects both the efficiency of induction and the molecular spectrum of HPRT mutations in human T lymphocytes both in vitro and in vivo. The mutational spectrum may be relatively specific for radiations of different quality and thus allow a more precise measurement of the induction of somatic gene mutations resulting from individual exposures to radiation, and thereby provide more sensitive assessments of health risks.
- Published
- 1997
26. Effect of folate deficiency on mutations at the hprt locus in Chinese hamster ovary cells exposed to monofunctional alkylating agents
- Author
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R F, Branda, A R, Lafayette, J P, O'Neill, and J A, Nicklas
- Subjects
Alkylating Agents ,Hypoxanthine Phosphoribosyltransferase ,Cricetinae ,Ethyl Methanesulfonate ,Ethylnitrosourea ,Mutation ,Animals ,CHO Cells ,Folic Acid Deficiency ,Thioguanine ,Polymerase Chain Reaction - Abstract
Multiplex PCR amplification of hprt exons from 113 Chinese hamster ovary cell clones selected for resistance to 6-thioguanine was performed to investigate the molecular basis for the synergistic mutagenic effects of nutritional folic acid deficiency and alkylating agents. In cells treated with ethyl methanesulfonate, intragenic deletions were detected in 9 of 46 (19.6%) clones derived from folate-deficient cells, but in none of 16 mutants grown in folate-replete medium. The number of deletions found in mutants generated by N-nitroso-N-ethylurea was low in both folate-deficient (1 of 25; 4%) and folate-replete (1 of 26; 3.8%) cells. Correction of folate deficiency may decrease the frequency of intragenic deletions caused by some alkylating agents.
- Published
- 1997
27. High frequency in vivo loss of heterozygosity is primarily a consequence of mitotic recombination
- Author
-
P K, Gupta, A, Sahota, S A, Boyadjiev, S, Bye, C, Shao, J P, O'Neill, T C, Hunter, R J, Albertini, P J, Stambrook, and J A, Tischfield
- Subjects
Male ,Recombination, Genetic ,Heterozygote ,Hypoxanthine Phosphoribosyltransferase ,T-Lymphocytes ,Adenine Phosphoribosyltransferase ,Drug Resistance ,Chromosome Mapping ,Mitosis ,Gene Rearrangement, T-Lymphocyte ,Clone Cells ,Humans ,Point Mutation ,Female ,2-Aminopurine ,Thioguanine ,Gene Deletion ,Microsatellite Repeats - Abstract
We have used the adenine phosphoribosyltransferase gene (APRT; 16q24) to investigate the mechanisms of loss of heterozygosity (LOH) in normal human somatic cells in vivo. APRT-deficient (APRT-/-, APRT-/0) T lymphocytes from the peripheral blood of four obligate APRT heterozygotes (APRT+/-) with characterized germ-line mutations were selected in medium containing 100 microM 2,6-diaminopurine. A total of 80 2,6-diaminopurine-resistant T-cell clones from 2 of the heterozygotes were analyzed for this study. The presence or absence of LOH of proximal linked microsatellite repeat markers was used to divide the clones into two groups: (a) those in which LOH was likely due to localized changes in APRT (e.g., point mutations); and (b) those with LOH at additional loci. A total of 61 clones (76%) exhibited LOH of linked microsatellite repeat markers at different locations on 16q, which extended from the smallest measured region (5.5 cM) to the entire 16q arm. The remaining 19 clones (24%) had point mutations in APRT or other relatively minor alterations. Ten clones with LOH encompassing different regions of 16q were examined by conventional cytogenetics and by fluorescence in situ hybridization using an APRT cosmid probe. All clones exhibited a normal diploid karyotype, and nine exhibited two copies of APRT. The one clone that was hemizygous for APRT had the smallest observed region of LOH in clones from that individual. These results indicate that mitotic recombination and, to a much lesser extent, deletion may be the primary mechanisms for the relatively high frequency of in vivo LOH observed in normal human T cells. Because LOH leads to the expression of recessive tumor suppressor genes in many cancers, these data have significant implications for the role of LOH in the early stages of tumor development, especially in breast cancer.
- Published
- 1997
28. Metabolic cooperation in the selection of thioguanine-resistant mutants does not occur with the human B-lymphoblastoid cell TK6
- Author
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R M, Gundel and J P, O'Neill
- Subjects
B-Lymphocytes ,Mutation ,Drug Resistance ,Humans ,Cell Separation ,Thioguanine ,Cell Line - Abstract
Selection for thioguanine resistant mutants in the human B-lymphoblastoid cell TK6 yields the same results in both round and flat bottom 96-well microtiter plates. These results suggest that metabolic cooperation is not an issue in these cells and show that round bottom wells can be used in place of flat bottom wells.
- Published
- 1997
29. Increased frequency of specific genomic deletions resulting from in vitro malathion exposure
- Author
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J M, Pluth, J A, Nicklas, J P, O'Neill, and R J, Albertini
- Subjects
Adult ,Male ,Hypoxanthine Phosphoribosyltransferase ,Base Sequence ,Mutagenicity Tests ,T-Lymphocytes ,DNA Mutational Analysis ,Molecular Sequence Data ,Drug Resistance ,Reproducibility of Results ,Exons ,Polymerase Chain Reaction ,Resting Phase, Cell Cycle ,Genes ,Mutagenesis ,Malathion ,Humans ,Nucleic Acid Conformation ,Drug Contamination ,Thioguanine ,Cells, Cultured ,Sequence Deletion - Abstract
Malathion is a widely used pesticide with high potential for human exposure. Epidemiological studies suggest that individuals with chronic environmental exposures to pesticides have increased risks of various hematological malignancies. The genotoxic data to date have been somewhat inconclusive with regard to malathion exposure. We have used a cell cloning assay to study the genotoxicity of in vitro exposure of human T lymphocytes to malathion. We exposed cells in G0 to doses of malathion ranging from 10 to 600 microg/ml. Mutant frequencies of treated samples showed both intra- and interindividual variability and, in some cases, slight significant increases over the controls. Molecular analysis of hprt mutants resulting from both in vitro and an in vivo malathion exposure was performed by genomic multiplex PCR. In seven in vitro experiments (using cells from four different individuals) and one experiment on an individual exposed in vivo, one or more independent mutant(s) containing a partial deletion of exon 3 have been isolated from each individual. In five of the seven mutants, the deleted regions overlap extensively, revealing an area within exon 3 exceptionally prone to deletions upon exposure to malathion, This work provides the first evidence of an association between malathion exposure and specific mutations in human T lymphocytes. Additional work is necessary to determine the underlying molecular mechanism for these deletions and how this may relate to agricultural workers' increased risk of cancer.
- Published
- 1996
30. Analysis of in vivo somatic mutations at the APRT locus
- Author
-
P K, Gupta, A, Sahota, S A, Boyadjiev, S, Bye, J P, O'Neill, T C, Hunter, R J, Albertini, and J A, Tischfield
- Subjects
Adult ,Male ,Heterozygote ,Hypoxanthine Phosphoribosyltransferase ,Polymorphism, Genetic ,T-Lymphocytes ,Adenine Phosphoribosyltransferase ,DNA, Satellite ,Polymerase Chain Reaction ,Introns ,Nuclear Family ,Mutation ,Humans ,Point Mutation ,Female ,Chromosome Deletion ,Child ,DNA Primers ,Repetitive Sequences, Nucleic Acid - Published
- 1994
31. Factors influencing mutation at the hprt locus in T-lymphocytes: women treated for breast cancer
- Author
-
R F, Branda, J P, O'Neill, L M, Sullivan, and R J, Albertini
- Subjects
Hypoxanthine Phosphoribosyltransferase ,Folic Acid ,Radiotherapy ,Mutagenesis ,T-Lymphocytes ,Smoking ,Humans ,Antineoplastic Agents ,Breast Neoplasms ,Female ,Prospective Studies ,Combined Modality Therapy - Abstract
Forty-nine women with breast cancer were enrolled in a prospective, longitudinal study of the genetic damage caused by treatment. Assays of mutant frequency at the hprt locus in peripheral blood lymphocytes were performed at approximately 6-month intervals for 2 years. Treatment consisted of surgery alone or additional tamoxifen, radiotherapy, or chemotherapy in various combinations. At 6 months, there was an elevation of mean mutant frequency compared to initial values (P = 0.004) which persisted for as many as 2 years. A significant elevation at 6 months occurred only in the group of women who received combination chemotherapy (P = 0.005). Within this group, 5 of 15 patients had striking elevations of mutant frequency following chemotherapy (greater than 3 SD). Three of these 5 women had serum folate levels in the deficient range, while only one of 9 patients with lesser responses to chemotherapy were folate deficient. The change in mutant frequency after chemotherapy was inversely related to serum folate levels (P = 0.05) and to the number of years of smoking cigarettes (P = 0.01). We conclude that of the various modalities used to treat breast cancer, only chemotherapy was accompanied by a high risk of somatic mutation. A subset of patients manifested substantial increases in mutant frequency, often in association with low serum folate levels.
- Published
- 1991
32. V(D)J recombinase-like activity mediates hprt gene deletion in human fetal T-lymphocytes
- Author
-
J C, Fuscoe, L J, Zimmerman, M J, Lippert, J A, Nicklas, J P, O'Neill, and R J, Albertini
- Subjects
Hypoxanthine Phosphoribosyltransferase ,Base Sequence ,T-Lymphocytes ,Molecular Sequence Data ,Infant, Newborn ,Exons ,Polymerase Chain Reaction ,Gene Expression Regulation, Enzymologic ,Introns ,Clone Cells ,Oligodeoxyribonucleotides ,DNA Nucleotidyltransferases ,Mutation ,Humans ,Nucleic Acid Conformation ,Chromosome Deletion ,VDJ Recombinases ,Cells, Cultured - Abstract
Studies from several laboratories worldwide have developed a large database for in vivo hypoxanthine-guanine phosphoribosyltransferase gene mutations in human T-lymphocytes. Sufficient differences have been found thus far between the spectrum for spontaneous mutations in adults and that observed in the fetus to suggest fundamental differences in in vivo mutagenic mechanisms at these two life stages. In adults, only approximately 15% of hypoxanthine-guanine phosphoribosyltransferase mutations have structural alterations on Southern blots, while in the fetus 75% of mutations show alterations of which one-half are deletions of exons 2 and 3. We have now sequenced the breakpoint sites for these specific deletions in 18 mutant lymphocyte clones isolated from 13 normal newborns. Three classes of deletions were found. Each class had the same intron 1 breakpoint but a different intron 3 breakpoint. These mutations have all the signatures of a V(D)J recombinase-mediated event (a 5' consensus heptamer, 3' consensus heptamer and nonamer, nibbling, non-germline-encoded nucleotides, P-nucleotides). At the 3' breakpoint of the most common class (comprising 83% of the mutants) a perfect heptamer can be created by postulating a hairpin loop which could attain a Z-DNA configuration. This feature may indicate recombinase preference for certain DNA structures. These results implicate the V(D)J recombinase in illegitimate events causing mutation in this housekeeping gene during T-cell development. Inactivation of genes involved in the control of growth and differentiation (e.g., tumor suppressor genes) by this mechanism may have important implications for cancer development.
- Published
- 1991
33. Buckling of Shells Under Dynamic Loads
- Author
-
L. R. Koval and J. P. O'neill
- Subjects
Thermodynamics And Combustion - Abstract
Cylindrical shell buckling under dynamic pressure
- Published
- 1963
34. Fine structure mapping of the hypoxanthine-guanine phosphoribosyltransferase (HPRT) gene region of the human X chromosome (Xq26)
- Author
-
J A, Nicklas, T C, Hunter, J P, O'Neill, and R J, Albertini
- Subjects
Adult ,Hypoxanthine Phosphoribosyltransferase ,X Chromosome ,T-Lymphocytes ,Infant, Newborn ,Chromosome Mapping ,Exons ,Clone Cells ,Genes ,Humans ,Chromosome Deletion ,Cisplatin ,DNA Probes ,Cells, Cultured ,Polymorphism, Restriction Fragment Length ,Aged ,Research Article - Abstract
The Xq26-q27 region of the X chromosome is interesting, as an unusually large number of genes and anonymous RFLP probes have been mapped in this area. A number of studies have used classical linkage analysis in families to map this region. Here, we use mutant human T-lymphocyte clones known to be deleted for all or part of the hypoxanthine-guanine phosphoribosyltransferase (hprt) gene, to order anonymous probes known to map to Xq26. Fifty-seven T-cell clones were studied, including 44 derived from in vivo mutation and 13 from in vitro irradiated T-lymphocyte cultures. Twenty anonymous probes (DXS10, DXS11, DXS19, DXS37, DXS42, DXS51, DXS53, DXS59, DXS79, DXS86, DXS92, DXS99, DXS100d, DXS102, DXS107, DXS144, DXS172, DXS174, DXS177, and DNF1) were tested for codeletion with the hprt gene by Southern blotting methods. Five of these probes (DXS10, DXS53, DXS79, DXS86 and DXS177) showed codeletion with hprt in some mutants. The mutants established the following unambiguous ordering of the probes relative to the hprt gene: DXS53-DXS79-5'hprt3'-DXS86-DXS10-DXS177 . The centromere appears to map proximal to DXS53. These mappings order several closely linked but previously unordered probes. In addition, these studies indicate that rather large deletions of the functionally haploid X chromosome can occur while still retaining T-cell viability.
- Published
- 1991
35. Effect of pentachlorophenol on the activation of 2,6-dinitrotoluene to genotoxic urinary metabolites in CD-1 mice: a comparison of GI enzyme activities and urine mutagenicity
- Author
-
S. Elizabeth George, Robert W. Chadwick, John P. Creason, Michael J. Kohan, John P. Dekker, and J. P. O'Neill
- Subjects
Male ,Salmonella typhimurium ,Pentachlorophenol ,Epidemiology ,Health, Toxicology and Mutagenesis ,Urine ,Pharmacology ,Reductase ,medicine.disease_cause ,Ames test ,Nitroreductase ,chemistry.chemical_compound ,Mice ,medicine ,Bioassay ,Animals ,Genetics (clinical) ,Biotransformation ,Glucuronidase ,chemistry.chemical_classification ,Chemistry ,Mutagenicity Tests ,Organ Size ,Nitroreductases ,Dinitrobenzenes ,Enzyme ,Multivariate Analysis ,Oxidoreductases ,Digestive System ,Genotoxicity ,Mutagens - Abstract
2,6-Dinitrotoluene (2,6-DNT) and pentachlorophenol (PCP) are used for industrial purposes and are found in the environment as hazardous contaminants. Because concurrent exposure to both compounds can occur, it is of interest to determine if organochlorine compounds potentiate the effect of nitroaromatic chemicals. CD-1 mice were treated with PCP (42.8 mg/kg) for 4 weeks. On weeks 1, 2, and 4 after the initial PCP dose, mice were treated p.o. with 2,6-DNT (75 mg/kg) and 24 hr urines were collected. After concentration, the urines were tested for their mutagenic activity in Salmonella typhimurium strain TA98 without metabolic activation in a microsuspension bioassay. A significant increase (P less than .05) in mutagenicity was observed in urines from mice treated with 2,6-DNT alone and in combination with PCP. By week 4, mice that received both 2,6-DNT and PCP excreted urine that was more mutagenic than that from animals which received only 2,6-DNT. At weeks 2 and 4, mice were sacrificed and intestinal enzyme activities (nitroreductase, azo reductase, beta-glucuronidase, dechlorinase, and dehydrochlorinase) were quantitated. The enhanced genotoxicity observed in urines from 2,6-DNT/PCP-treated mice coincided with a decrease in nitroreductase and an increase in beta-glucuronidase activities in the small intestine.
- Published
- 1991
36. Enumeration of 6-thioguanine-resistant T-lymphocytes in the peripheral blood of nonhuman primates (cynomolgus monkeys)
- Author
-
D. M. Zimmer, C. S. Aaron, J. P. O'Neill, R. J. Albertini, J. H. Carver, and G. R. Hoffman
- Subjects
Male ,Epidemiology ,Somatic cell ,Health, Toxicology and Mutagenesis ,Lymphocyte ,T-Lymphocytes ,Drug Resistance ,Biology ,Tioguanine ,Cell Line ,In vivo ,medicine ,Animals ,Mutation frequency ,Thioguanine ,Genetics (clinical) ,Models, Genetic ,T lymphocyte ,Phenotype ,Molecular biology ,Clone Cells ,Macaca fascicularis ,medicine.anatomical_structure ,Mutagenesis ,Ethylnitrosourea ,Immunology ,Female ,Cell Division ,medicine.drug - Abstract
We have investigated the use of cynomolgus monkeys (Macaca fascicularis) as a model of somatic cell mutagenesis in non-human primates. Using techniques described by Albertini (Mutation Research 150:411-422, 1985) for similar studies in humans, the frequency of TG-resistant T-lymphocytes in the peripheral blood was determined in animals that were either untreated or treated with ethylnitrosourea. The frequency of TG-resistant cells in untreated males was (mean +/- SD) 6.0 +/- 5.9 per 10(6) cells and for untreated females was 2.9 +/- 2.7 per 10(6) cells. The spontaneous frequency of TG-resistant cells for all animals was 4.2 +/- 4.44 per 10(6) cells. Maximum frequency of TG-resistant cells for two animals treated with a single I.P. dose of ENU was 45.1 and 77.9 per 10(6) cells. Substantial increases in frequencies of TG-resistant cells were not seen until at least 63 days after treatment. The TG-resistant phenotype of clones isolated in the assay was stable after growth for 2 weeks in the absence of selective agent. Many of the TG-resistant clones selected were frozen for future molecular analysis.
- Published
- 1991
37. Cytosine arabinoside enhancement of gamma irradiation induced mutations in human T-lymphocytes
- Author
-
J. P. O'Neill, L. M. Sullivan, T. C. Hunter, J. A. Nicklas, J. R. Landolph, and G. R. Hoffman
- Subjects
DNA Repair ,Epidemiology ,DNA repair ,Health, Toxicology and Mutagenesis ,T-Lymphocytes ,Mutant ,Drug Resistance ,Mutagenesis (molecular biology technique) ,Gene mutation ,Biology ,medicine.disease_cause ,Gene Frequency ,medicine ,Humans ,Mutation frequency ,Thioguanine ,Genetics (clinical) ,Cells, Cultured ,Southern blot ,Chromosome Aberrations ,Mutation ,Cytarabine ,Dose-Response Relationship, Radiation ,Gene rearrangement ,DNA ,Molecular biology ,Gamma Rays ,DNA Damage - Abstract
The frequency of 6-thioguanine resistant (TGr) mutants induced in human G0 phase T-lymphocytes by 200 cGy of gamma irradiation is greatly enhanced by incubation with cytosine arabinoside (ara-C) after irradiation. The mutant frequency increased with increasing incubation time in ara-C for up to 2 hr. This mutation induction required a phenotypic expression time of 5-8 days mass culture growth, similar to that found with mutants induced by 300 cGy of irradiation alone. Southern blot analysis of 40 isolated mutant clones revealed 8 independent mutations by T-cell receptor (TCR) gene rearrangement patterns. Four of these eight showed hprt gene structural alterations (0.50). An alternative method to allow phenotypic expression was developed to minimize the isolation of hprt/TCR sibling mutants. The use of in situ expression in the microtiter dish wells resulted in the isolation of 17 independent mutations in 19 mutant clones. Ten of these 17 mutations showed hprt structural alterations (0.59). The high fraction of mutations involving structural alterations detected by Southern blot analysis is consistent with the known induction of chromosome aberrations by irradiation plus ara-C treatment. We propose that both the increase in Mf and the increase in the incidence of hprt gene structural alterations are due tomore » the accumulation of strand breaks in repairing regions of DNA under these conditions of ara-C induced inhibition of repair. We further propose that upon release of the ara-C inhibition, these repairing regions can interact to yield both gene mutations and chromosome aberrations.« less
- Published
- 1991
38. In vivo somatic mutation in the lymphocytes of Hodgkin's disease patients
- Author
-
C. Norman Coleman, Peter Mauch, J. P. O'Neill, Karl T. Kelsey, Michele Caggana, and Howard L. Liber
- Subjects
Oncology ,Adult ,medicine.medical_specialty ,Hypoxanthine Phosphoribosyltransferase ,Epidemiology ,Health, Toxicology and Mutagenesis ,medicine.medical_treatment ,Disease ,Biology ,Vinblastine ,Pathogenesis ,Cohort Studies ,Bleomycin ,Germline mutation ,Risk Factors ,Internal medicine ,Antineoplastic Combined Chemotherapy Protocols ,medicine ,Combined Modality Therapy ,Humans ,Lymphocytes ,Mechlorethamine ,Mutation frequency ,Genetics (clinical) ,Cells, Cultured ,Aged ,Aged, 80 and over ,Chemotherapy ,Analysis of Variance ,Smoking ,Middle Aged ,Hodgkin's lymphoma ,medicine.disease ,Hodgkin Disease ,Clone Cells ,Radiation therapy ,Dacarbazine ,Doxorubicin ,Mutagenesis ,Vincristine ,Procarbazine ,Immunology ,Mutation ,Prednisone ,Follow-Up Studies - Abstract
While current medical therapies for Hodgkin's disease are usually quite effective, it has become increasingly clear that some of the therapies utilized carry an inherent risk for the induction of secondary malignancies. In order to examine the cellular and genetic responses to therapy for Hodgkin's disease among individuals, we have determined the mutant frequency of T-lymphocytes in 3 cohorts of patients (N = 86) and in controls (N = 71) using a T-cell cloning assay selecting for 6-thioguanine resistance. The Hodgkin's disease cohorts studied include 1) new and untreated, 2) radiotherapy, and 3) combined modality therapy patients. Additionally, two patients receiving chemotherapy alone were studied. In untreated patients, 3 of 18 (17%) mutant frequencies were above the upper 95% confidence limit for mutant frequency in controls (12.6 x 10(-6]. After therapy, 14 out of 45 (31%) of those treated with X-rays only and 10 of 23 (44%) patients treated with both X-rays and chemotherapy had mutant frequencies greater than 12.6 x 10(-6). Overall, the results indicated that the individual response to Hodgkin's disease therapy was a heterogeneous one with a sub-population of persons having elevated mutant frequencies even many years after their last treatment. The larger frequency of elevated MFs in those patients who received intensive therapy (chemotherapy and radiotherapy) is consistent with their increased risk for second cancer induction.
- Published
- 1991
39. hprt mutations in vivo in human T-lymphocytes: frequencies, spectra and clonality
- Author
-
R J, Albertini, J P, O'Neill, J A, Nicklas, L, Recio, and T R, Skopek
- Subjects
Hypoxanthine Phosphoribosyltransferase ,Gene Frequency ,T-Lymphocytes ,DNA Mutational Analysis ,Mutation ,Humans ,Cell Differentiation ,Gene Rearrangement, T-Lymphocyte - Published
- 1990
40. Studies of DNA alterations in in vivo somatic cell mutations in humans
- Author
-
R J, Albertini, J A, Nicklas, and J P, O'Neill
- Subjects
Adult ,Hypoxanthine Phosphoribosyltransferase ,Phenotype ,T-Lymphocytes ,Mutation ,Infant, Newborn ,Humans ,Chromosome Deletion ,Gene Rearrangement, T-Lymphocyte ,Cells, Cultured ,Clone Cells ,DNA Damage - Published
- 1990
41. 44 THE EMERGENCE OF MUTAGENIC MECHANISMS IN PATIENTS WITH ULCERATIVE COLITIS
- Author
-
J. P. O'Neill, T. T.M. Nguyen, T. Messier, Barry A. Finette, and R. Colletti
- Subjects
medicine.medical_specialty ,business.industry ,Internal medicine ,medicine ,In patient ,General Medicine ,medicine.disease ,business ,Ulcerative colitis ,Gastroenterology ,General Biochemistry, Genetics and Molecular Biology - Published
- 2004
- Full Text
- View/download PDF
42. Erratum: 'Electron-beam-induced segregation in InGaN/GaN multiple-quantum wells' [Appl. Phys. Lett. 83, 1965 (2003)]
- Author
-
Tao Wang, Peter J. Parbrook, A. G. Cullis, Ian M. Ross, and J. P. O’Neill
- Subjects
Physics and Astronomy (miscellaneous) ,Condensed matter physics ,Chemistry ,Band gap ,Multiple quantum ,Quantum point contact ,Cathode ray ,Wide-bandgap semiconductor ,Semiconductor quantum wells ,Quantum well - Published
- 2004
- Full Text
- View/download PDF
43. Introduction to the U.S. environmental protection agency's genetic risk assessment on ethylene oxide
- Author
-
Vicki L. Dellarco, William H. Farland, and J. P. O'Neill
- Subjects
Models, Genetic ,Epidemiology ,Health, Toxicology and Mutagenesis ,Risk factor (computing) ,Biology ,United States ,Risk Factors ,Environmental health ,Mutation ,Agency (sociology) ,Mutation (genetic algorithm) ,Animals ,Humans ,United States Environmental Protection Agency ,Genetic risk ,Genetics (clinical) ,Mutagens - Published
- 1990
- Full Text
- View/download PDF
44. Anaplastic (undifferentiated) thyroid cancer: improved insight and therapeutic strategy into a highly aggressive disease.
- Author
-
J P O'Neill, B O'Neill, C Condron, M Walsh, and D Bouchier-Hayes
- Abstract
Background: This review article discusses the clinical and diagnostic implications of anaplastic thyroid cancer, recognizing the aggressive nature of the disease and extensive disease progression upon diagnosis. Standard treatment strategies (surgical, chemotherapy, radiation) are discussed, comparing adjuvant and neo-adjuvant regimens and the emergence of tumour resistance with expression of multidrug resistance pumps. We question the pathological evolution of anaplasia as a 'de novo' disease or a post malignant transformation or dedifferentiation and the therapeutic implications of p53 mutation. Future treatment options are reviewed with an emphasis on specific molecular targets responsible for the neoplastic phenotype.Method: An electronic search on Medline and Pubmed was performed under 'anaplastic thyroid carcinoma', 'anaplastic thyroid carcinogenesis', 'anaplastic thyroid carcinoma treatment reviews'. Relevant papers were systematically reviewed from 1965 to present. [ABSTRACT FROM AUTHOR]
- Published
- 2005
45. Introduction to volume 19, supplement 21
- Author
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E. R. Nestmann and J. P. O'Neill
- Subjects
Volume (thermodynamics) ,Epidemiology ,Chemistry ,Health, Toxicology and Mutagenesis ,Genetics (clinical) ,Biomedical engineering - Published
- 1992
- Full Text
- View/download PDF
46. Introduction
- Author
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J. P. O'Neill and R. K. Elespuru
- Subjects
Epidemiology ,Health, Toxicology and Mutagenesis ,Genetics (clinical) - Published
- 1991
- Full Text
- View/download PDF
47. Possible role of adenosine cyclic 3':5'-monophosphate phosphodiesterase in the morphological transformation of Chinese hamster ovary cells mediated by N6,O2-dibutyryl adenosine cyclic 3':5'-monophosphate
- Author
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C H Schröder, J P O'Neill, A W Hsle, and K Kawashima
- Subjects
Chemistry ,Chinese hamster ovary cell ,Substrate (chemistry) ,Phosphodiesterase ,Endogeny ,Cell Biology ,Inhibitory postsynaptic potential ,Cell morphology ,Biochemistry ,Adenosine ,medicine ,Molecular Biology ,Intracellular ,medicine.drug - Abstract
We have demonstrated that in Chinese hamster ovary (CHO) cells, N6,O2'-dibutyryl adenosine cyclic 3':5'-monophosphate (dibutyryl cyclic AMP) has a remarkable morphogenetic effect in converting cells of a compact, epithelial-like morphology into a spindle-shaped, fibroblast-like form. Homogenates of CHO cells were found to contain two adenosine cyclic 3':5'-monophosphate (cyclic AMP) phosphodiesterase (EC 3.1.4.c) activities, which differ in apparent Km with respect to their substrate, cyclic AMP. These were designated cyclic AMP phosphodiesterase I, with a low Km of 2 to 5 muM and cyclic AMP phosphodiesterase II, with a high Km of 1 to 3 mM. Cyclic AMP phosphodiesterase I was competitively inhibited by N6-monobutyryl and dibutyryl cyclic AMP, with apparent Ki values of 40 to 60 muM and 0.25 to 0.35 mM, respectively. Experimental evidence demonstrates that the effect of exogenous dibutyryl cyclic AMP on cell morphology is a result of an increase in the endogenous level of cyclic AMP. This increase appears to be due largely to the inhibitory action of intracellular N6-monobutyryl cyclic AMP on cyclic AMP phosphodiesterase I, which results in a decreased rate of degradation of intracellular cyclic AMP.
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- 1975
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48. Hudrolysis of butyryl derivatives of adenosine cyclic 3':5'-monophosphate by Chinese hamster ovary cell extracts and characterization fo the products
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A W Hsle, C H Schröder, and J P O'Neill
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Biochemistry ,Chemistry ,Chinese hamster ovary cell ,medicine ,Cell Biology ,Molecular Biology ,Adenosine ,medicine.drug - Published
- 1975
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49. Electromagnetic Measurement of and Location of Lightning
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E. L. Breen, J. P. O'Neill, D. L. Hall, C. E. Baum, and C. B. Moore
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Electromagnetic field ,Physics ,Radiation ,Acoustics ,Use of time ,Electromagnetic compatibility ,Lightning ,Electronic, Optical and Magnetic Materials ,Magnetic field ,Nuclear magnetic resonance ,Physics::Plasma Physics ,Transient (oscillation) ,Electrical and Electronic Engineering ,Electromagnetic pulse - Abstract
This paper summarizes some techniques developed for electromagnetic measurements of lightning electromagnetic fields at Langmuir Laboratory. These included measurement of transient electric and magnetic fields at the ground surface, use of these fields to estimate location of the lightning and properties of the source, and use of time of arrival at different sensors to locate the source. These measurements are compared to acoustic and photographic measurements of the same events.
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- 1987
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50. The use of Chinese hamster ovary cells to quantify specific locus mutation and to determine mutagenicity of chemicals
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Abraham Hsie, D.F. Krahn, B.L. Whitfield, D. B. Couch, J. P. O'Neill, and Daniel A. Casciano
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Genetics ,Chinese hamster ovary cell ,Mutagen ,Locus (genetics) ,Gene mutation ,Biology ,Toxicology ,medicine.disease_cause ,Chromosome aberration ,Genetic marker ,medicine ,Mutation frequency ,Gene - Abstract
The GENE-TOX Group on Specific Gene Mutations in Chinese Hamster Ovary (CHO) Cells has evaluated the use of mutational systems in these cells for identification of mutagenic chemicals from 261 references in the file of the Environmental Mutagen Information Center, Oak Ridge National Laboratory by February, 1979; 68 references were found to be relevant to the stated task. After establishing that the end-point of mutational measurement occurs at a specific locus and the determinations are quantifiable and reproducible, data from 21 references were found to fulfill such requirements. Among them, 14 were concerned with chemically-induced mutations to resistance to a purine analogue, 6-thioguanine, which selects for variants deficient in the enzyme hypoxanthine—guanine phosphoribosyl transferase (HGPRT). This mutational system is referred to as the CHO/HGPRT assay. Studies with other genetic markers offer promise for the development of quantitative specific genemutational assays, but these studies have not advanced thoroughly enough to assess their value. Several lines of genetic, physiological and biochemical evidence support the premise that the CHO/HGPRT system fulfills the criteria for measurement of specific gene mutations using CHO-K1-BH4 subclone and other appropriate CHO subclones. Based largely on published information, this Work Group has suggested a protocol for testing of chemical agents with consideration of the following: cells, media, culture conditions and their quality control, treatment with test compounds with and without an exogenous metabolic activation system, estimation of cytoxicity (cloning efficiency), optimum expression and selection of the mutant phenotype, calculation of mutation frequency, positive and negative controls, vehicles or solvents, spontaneous mutation frequency, dosage selection and number of doses, and collection of raw data. For interpretation of the mutagenesis data, this Work Group recommends various ways of presenting data, numerous criteria for acceptability of data, the need to use appropriate statistical procedures for data evaluation, and a potential applicability of results to hazard evaluation. Evaluation of test performances with 18 chemicals revealed that the correlation between mutagenicity in CHO/HGPRT assay and animal mutagenicity and carcinogenicity is high. Since the number of chemicals tested was small and 17 of the 18 compounds were direct-acting agents, the utility of the system for identification of various classes of potential mutagens and carcinogens cannot be adequately assessed until more chemical classes, especially promutagens, are tested. However, the assay has a sound genetic and biochemical basis for quantifying specific locus mutation reproducibly. The fact that CHO cells are also useful for determination of chemically-induced chromosome aberration and sister-chromatid exchange adds an additional strength to the assay. Future research should address the possible improvement of procedures for phenotypic expression and application for testing gaseous and volatile liquids, as well as such problems as appropriate metabolic activation system(s) and effective statistical procedures common to perhaps all short-term cellular assays. Recent rapid development of mutagen test systems like the CHO/HGPRT assay calls for a need to update and evaluate the data base generated.
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- 1981
- Full Text
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