118 results on '"J. Hitti"'
Search Results
2. Towards Uncovering the Role of Incomplete Penetrance in Maculopathies through Sequencing of 105 Disease-Associated Genes
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Rebekkah J. Hitti-Malin, Daan M. Panneman, Zelia Corradi, Erica G. M. Boonen, Galuh Astuti, Claire-Marie Dhaenens, Heidi Stöhr, Bernhard H. F. Weber, Dror Sharon, Eyal Banin, Marianthi Karali, Sandro Banfi, Tamar Ben-Yosef, Damjan Glavač, G. Jane Farrar, Carmen Ayuso, Petra Liskova, Lubica Dudakova, Marie Vajter, Monika Ołdak, Jacek P. Szaflik, Anna Matynia, Michael B. Gorin, Kati Kämpjärvi, Miriam Bauwens, Elfride De Baere, Carel B. Hoyng, Catherina H. Z. Li, Caroline C. W. Klaver, Chris F. Inglehearn, Kaoru Fujinami, Carlo Rivolta, Rando Allikmets, Jana Zernant, Winston Lee, Osvaldo L. Podhajcer, Ana Fakin, Jana Sajovic, Alaa AlTalbishi, Sandra Valeina, Gita Taurina, Andrea L. Vincent, Lisa Roberts, Raj Ramesar, Giovanna Sartor, Elena Luppi, Susan M. Downes, L. Ingeborgh van den Born, Terri L. McLaren, John N. De Roach, Tina M. Lamey, Jennifer A. Thompson, Fred K. Chen, Anna M. Tracewska, Smaragda Kamakari, Juliana Maria Ferraz Sallum, Hanno J. Bolz, Hülya Kayserili, Susanne Roosing, and Frans P. M. Cremers
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maculopathies ,macula ,retinal ,inherited ,sequencing ,penetrance ,Microbiology ,QR1-502 - Abstract
Inherited macular dystrophies (iMDs) are a group of genetic disorders, which affect the central region of the retina. To investigate the genetic basis of iMDs, we used single-molecule Molecular Inversion Probes to sequence 105 maculopathy-associated genes in 1352 patients diagnosed with iMDs. Within this cohort, 39.8% of patients were considered genetically explained by 460 different variants in 49 distinct genes of which 73 were novel variants, with some affecting splicing. The top five most frequent causative genes were ABCA4 (37.2%), PRPH2 (6.7%), CDHR1 (6.1%), PROM1 (4.3%) and RP1L1 (3.1%). Interestingly, variants with incomplete penetrance were revealed in almost one-third of patients considered solved (28.1%), and therefore, a proportion of patients may not be explained solely by the variants reported. This includes eight previously reported variants with incomplete penetrance in addition to CDHR1:c.783G>A and CNGB3:c.1208G>A. Notably, segregation analysis was not routinely performed for variant phasing—a limitation, which may also impact the overall diagnostic yield. The relatively high proportion of probands without any putative causal variant (60.2%) highlights the need to explore variants with incomplete penetrance, the potential modifiers of disease and the genetic overlap between iMDs and age-related macular degeneration. Our results provide valuable insights into the genetic landscape of iMDs and warrant future exploration to determine the involvement of other maculopathy genes.
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- 2024
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3. Cost-effective sequence analysis of 113 genes in 1,192 probands with retinitis pigmentosa and Leber congenital amaurosis
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Daan M. Panneman, Rebekkah J. Hitti-Malin, Lara K. Holtes, Suzanne E. de Bruijn, Janine Reurink, Erica G. M. Boonen, Muhammad Imran Khan, Manir Ali, Sten Andréasson, Elfride De Baere, Sandro Banfi, Miriam Bauwens, Tamar Ben-Yosef, Béatrice Bocquet, Marieke De Bruyne, Berta de la Cerda, Frauke Coppieters, Pietro Farinelli, Thomas Guignard, Chris F. Inglehearn, Marianthi Karali, Ulrika Kjellström, Robert Koenekoop, Bart de Koning, Bart P. Leroy, Martin McKibbin, Isabelle Meunier, Konstantinos Nikopoulos, Koji M. Nishiguchi, James A. Poulter, Carlo Rivolta, Enrique Rodríguez de la Rúa, Patrick Saunders, Francesca Simonelli, Yasmin Tatour, Francesco Testa, Alberta A. H. J. Thiadens, Carmel Toomes, Anna M. Tracewska, Hoai Viet Tran, Hiroaki Ushida, Veronika Vaclavik, Virginie J. M. Verhoeven, Maartje van de Vorst, Christian Gilissen, Alexander Hoischen, Frans P. M. Cremers, and Susanne Roosing
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inherited retinal diseases ,targeted gene sequencing ,cost-effective ,high-throughput ,smMIPs ,Biology (General) ,QH301-705.5 - Abstract
Introduction: Retinitis pigmentosa (RP) and Leber congenital amaurosis (LCA) are two groups of inherited retinal diseases (IRDs) where the rod photoreceptors degenerate followed by the cone photoreceptors of the retina. A genetic diagnosis for IRDs is challenging since >280 genes are associated with these conditions. While whole exome sequencing (WES) is commonly used by diagnostic facilities, the costs and required infrastructure prevent its global applicability. Previous studies have shown the cost-effectiveness of sequence analysis using single molecule Molecular Inversion Probes (smMIPs) in a cohort of patients diagnosed with Stargardt disease and other maculopathies.Methods: Here, we introduce a smMIPs panel that targets the exons and splice sites of all currently known genes associated with RP and LCA, the entire RPE65 gene, known causative deep-intronic variants leading to pseudo-exons, and part of the RP17 region associated with autosomal dominant RP, by using a total of 16,812 smMIPs. The RP-LCA smMIPs panel was used to screen 1,192 probands from an international cohort of predominantly RP and LCA cases.Results and discussion: After genetic analysis, a diagnostic yield of 56% was obtained which is on par with results from WES analysis. The effectiveness and the reduced costs compared to WES renders the RP-LCA smMIPs panel a competitive approach to provide IRD patients with a genetic diagnosis, especially in countries with restricted access to genetic testing.
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- 2023
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4. Clinical, histopathological and genetic characterisation of oculoskeletal dysplasia in the Northern Inuit Dog.
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Renata Stavinohova, Claudia Hartley, Louise M Burmeister, Sally L Ricketts, Louise Pettitt, Roser Tetas Pont, Rebekkah J Hitti, Ellen Schofield, James A C Oliver, and Cathryn S Mellersh
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Medicine ,Science - Abstract
Seven Northern Inuit Dogs (NID) were diagnosed by pedigree analysis with an autosomal recessive inherited oculoskeletal dysplasia (OSD). Short-limbed dwarfism, angular limb deformities and a variable combination of macroglobus, cataracts, lens coloboma, microphakia and vitreopathy were present in all seven dogs, while retinal detachment was diagnosed in five dogs. Autosomal recessive OSD caused by COL9A3 and COL9A2 mutations have previously been identified in the Labrador Retriever (dwarfism with retinal dysplasia 1-drd1) and Samoyed dog (dwarfism with retinal dysplasia 2-drd2) respectively; both of those mutations were excluded in all affected NID. Nine candidate genes were screened in whole genome sequence data; only one variant was identified that was homozygous in two affected NID but absent in controls. This variant was a nonsense single nucleotide polymorphism in COL9A3 predicted to result in a premature termination codon and a truncated protein product. This variant was genotyped in a total of 1,232 dogs. All seven affected NID were homozygous for the variant allele (T/T), while 31/116 OSD-unaffected NID were heterozygous for the variant (C/T) and 85/116 were homozygous for the wildtype allele (C/C); indicating a significant association with OSD (p = 1.41x10-11). A subset of 56 NID unrelated at the parent level were analysed to determine an allele frequency of 0.08, estimating carrier and affected rates to be 15% and 0.6% respectively in NID. All 1,109 non-NID were C/C, suggesting the variant is rare or absent in other breeds. Expression of retinal mRNA was similar between an OSD-affected NID and OSD-unaffected non-NID. In conclusion, a nonsense variant in COL9A3 is strongly associated with OSD in NID, and appears to be widespread in this breed.
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- 2019
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5. An Inversion Disrupting FAM134B Is Associated with Sensory Neuropathy in the Border Collie Dog Breed
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Oliver P. Forman, Rebekkah J. Hitti, Louise Pettitt, Christopher A. Jenkins, Dennis P. O’Brien, G. Diane Shelton, Luisa De Risio, Rodrigo Gutierrez Quintana, Elsa Beltran, and Cathryn Mellersh
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FAM134B ,GWAS ,canine ,genome sequencing ,sensory neuropathy ,Genetics ,QH426-470 - Abstract
Sensory neuropathy in the Border Collie is a severe neurological disorder caused by the degeneration of sensory and, to a lesser extent, motor nerve cells with clinical signs starting between 2 and 7 months of age. Using a genome-wide association study approach with three cases and 170 breed matched controls, a suggestive locus for sensory neuropathy was identified that was followed up using a genome sequencing approach. An inversion disrupting the candidate gene FAM134B was identified. Genotyping of additional cases and controls and RNAseq analysis provided strong evidence that the inversion is causal. Evidence of cryptic splicing resulting in novel exon transcription for FAM134B was identified by RNAseq experiments. This investigation demonstrates the identification of a novel sensory neuropathy associated mutation, by mapping using a minimal set of cases and subsequent genome sequencing. Through mutation screening, it should be possible to reduce the frequency of or completely eliminate this debilitating condition from the Border Collie breed population.
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- 2016
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6. Effective smMIPs-Based Sequencing of Maculopathy-Associated Genes in Stargardt Disease Cases and Allied Maculopathies from the UK
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Benjamin Mc Clinton, Zelia Corradi, Martin McKibbin, Daan M. Panneman, Susanne Roosing, Erica G. M. Boonen, Manir Ali, Christopher M. Watson, David H. Steel, Frans P. M. Cremers, Chris F. Inglehearn, Rebekkah J. Hitti-Malin, and Carmel Toomes
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All institutes and research themes of the Radboud University Medical Center ,Neurodevelopmental disorders Donders Center for Medical Neuroscience [Radboudumc 7] ,Genetics ,maculopathies ,ABCA4 ,Stargardt ,smMIPs ,inherited retinal diseases ,NGS ,Metabolic Disorders Radboud Institute for Molecular Life Sciences [Radboudumc 6] ,Genetics (clinical) ,Sensory disorders Donders Center for Medical Neuroscience [Radboudumc 12] - Abstract
Macular dystrophies are a group of individually rare but collectively common inherited retinal dystrophies characterised by central vision loss and loss of visual acuity. Single molecule Molecular Inversion Probes (smMIPs) have proved effective in identifying genetic variants causing macular dystrophy. Here, a previously established smMIPs panel tailored for genes associated with macular diseases has been used to examine 57 UK macular dystrophy cases, achieving a high solve rate of 63.2% (36/57). Among 27 bi-allelic STGD1 cases, only three novel ABCA4 variants were identified, illustrating that the majority of ABCA4 variants in Caucasian STGD1 cases are currently known. We examined cases with ABCA4-associated disease in detail, comparing our results with a previously reported variant grading system, and found this model to be accurate and clinically useful. In this study, we showed that ABCA4-associated disease could be distinguished from other forms of macular dystrophy based on clinical evaluation in the majority of cases (34/36)
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- 2023
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7. Optical genome mapping and revisiting short-read genome sequencing data reveal previously overlooked structural variants disrupting retinal disease−associated genes
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Suzanne E. de Bruijn, Kim Rodenburg, Jordi Corominas, Tamar Ben-Yosef, Janine Reurink, Hannie Kremer, Laura Whelan, Astrid S. Plomp, Wolfgang Berger, G. Jane Farrar, Árpád Ferenc Kovács, Isabelle Fajardy, Rebekkah J. Hitti-Malin, Nicole Weisschuh, Marianna E. Weener, Dror Sharon, Ronald J.E. Pennings, Lonneke Haer-Wigman, Carel B. Hoyng, Marcel R. Nelen, Lisenka E.L.M. Vissers, L. Ingeborgh van den Born, Christian Gilissen, Frans P.M. Cremers, Alexander Hoischen, Kornelia Neveling, Susanne Roosing, Human Genetics, Human genetics, and Amsterdam Reproduction & Development (AR&D)
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All institutes and research themes of the Radboud University Medical Center ,Neurodevelopmental disorders Donders Center for Medical Neuroscience [Radboudumc 7] ,Inherited retinal diseases ,Optical genome mapping ,Next-generation sequencing ,Short-read genome sequencing ,Structural variants ,Other Research Radboud Institute for Health Sciences [Radboudumc 0] ,lnfectious Diseases and Global Health Radboud Institute for Molecular Life Sciences [Radboudumc 4] ,Metabolic Disorders Radboud Institute for Molecular Life Sciences [Radboudumc 6] ,Sensory disorders Donders Center for Medical Neuroscience [Radboudumc 12] ,Genetics (clinical) - Abstract
Purpose: Structural variants (SVs) play an important role in inherited retinal diseases (IRD). Although the identification of SVs significantly improved upon the availability of genome sequencing, it is expected that involvement of SVs in IRDs is higher than anticipated. We revisited short-read genome sequencing data to enhance the identification of gene-disruptive SVs. Methods: Optical genome mapping was performed to improve SV detection in short-read genome sequencing−negative cases. In addition, reanalysis of short-read genome sequencing data was performed to improve the interpretation of SVs and to re-establish SV prioritization criteria. Results: In a monoallelic USH2A case, optical genome mapping identified a pericentric inversion (173 megabase), with 1 breakpoint disrupting USH2A. Retrospectively, the variant could be observed in genome sequencing data but was previously deemed false positive. Reanalysis of short-read genome sequencing data (427 IRD cases) was performed which yielded 30 pathogenic SVs affecting, among other genes, USH2A (n = 15), PRPF31 (n = 3), and EYS (n = 2). Eight of these (>25%) were overlooked during previous analyses. Conclusion: Critical evaluation of our findings allowed us to re-establish and improve our SV prioritization and interpretation guidelines, which will prevent missing pathogenic events in future analyses. Our data suggest that more attention should be paid to SV interpretation and the current contribution of SVs in IRDs is still underestimated., Genetics in Medicine, 25 (3)
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- 2022
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8. ABCA4 c.859-25A>G, a Frequent Palestinian Founder Mutation Affecting the Intron 7 Branchpoint, Is Associated With Early-Onset Stargardt Disease
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Zelia Corradi, Manar Salameh, Mubeen Khan, Elise Héon, Ketan Mishra, Rebekkah J. Hitti-Malin, Yahya AlSwaiti, Alice Aslanian, Eyal Banin, Brian P. Brooks, Wadih M. Zein, Robert B. Hufnagel, Susanne Roosing, Claire‐Marie Dhaenens, Dror Sharon, Frans P. M. Cremers, and Alaa AlTalbishi
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Neurodevelopmental disorders Donders Center for Medical Neuroscience [Radboudumc 7] ,Mutation ,Humans ,Stargardt Disease ,ATP-Binding Cassette Transporters ,Cone-Rod Dystrophies ,Introns ,Sensory disorders Donders Center for Medical Neuroscience [Radboudumc 12] ,Arabs ,Pedigree - Abstract
Contains fulltext : 251966.pdf (Publisher’s version ) (Open Access) PURPOSE: The effect of noncoding variants is often unknown in the absence of functional assays. Here, we characterized an ABCA4 intron 7 variant, c.859-25A>G, identified in Palestinian probands with Stargardt disease (STGD) or cone-rod dystrophy (CRD). We investigated the effect of this variant on the ABCA4 mRNA and retinal phenotype, and its prevalence in Palestine. METHODS: The ABCA4 gene was sequenced completely or partially in 1998 cases with STGD or CRD. The effect of c.859-25A>G on splicing was investigated in silico using SpliceAI and in vitro using splice assays. Homozygosity mapping was performed for 16 affected individuals homozygous for c.859-25A>G. The clinical phenotype was assessed using functional and structural analyses including visual acuity, full-field electroretinography, and multimodal imaging. RESULTS: The smMIPs-based ABCA4 sequencing revealed c.859-25A>G in 10 Palestinian probands from Hebron and Jerusalem. SpliceAI predicted a significant effect of this putative branchpoint-inactivating variant on the nearby intron 7 splice acceptor site. Splice assays revealed exon 8 skipping and two partial inclusions of intron 7, each having a deleterious effect. Additional genotyping revealed another 46 affected homozygous or compound heterozygous individuals carrying variant c.859-25A>G. Homozygotes shared a genomic segment of 59.6 to 87.9 kb and showed severe retinal defects on ophthalmoscopic evaluation. CONCLUSIONS: The ABCA4 variant c.859-25A>G disrupts a predicted branchpoint, resulting in protein truncation because of different splice defects, and is associated with early-onset STGD1 when present in homozygosity. This variant was found in 25/525 Palestinian inherited retinal dystrophy probands, representing one of the most frequent inherited retinal disease-causing variants in West-Bank Palestine.
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- 2022
9. Using single molecule Molecular Inversion Probes as a cost-effective, high-throughput sequencing approach to target all genes and loci associated with macular diseases
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Rebekkah J, Hitti-Malin, Claire-Marie, Dhaenens, Daan M, Panneman, Zelia, Corradi, Mubeen, Khan, Anneke I, den Hollander, G Jane, Farrar, Christian, Gilissen, Alexander, Hoischen, Maartje, van de Vorst, Femke, Bults, Erica G M, Boonen, Patrick, Saunders, Susanne, Roosing, and Frans P M, Cremers
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Neurodevelopmental disorders Donders Center for Medical Neuroscience [Radboudumc 7] ,Genetics ,lnfectious Diseases and Global Health Radboud Institute for Molecular Life Sciences [Radboudumc 4] ,Metabolic Disorders Radboud Institute for Molecular Life Sciences [Radboudumc 6] ,Genetics (clinical) ,Sensory disorders Donders Center for Medical Neuroscience [Radboudumc 12] - Abstract
Contains fulltext : 286869.pdf (Publisher’s version ) (Closed access) Macular degenerations (MDs) are a subgroup of retinal disorders characterized by central vision loss. Knowledge is still lacking on the extent of genetic and nongenetic factors influencing inherited MD (iMD) and age-related MD (AMD) expression. Single molecule Molecular Inversion Probes (smMIPs) have proven effective in sequencing the ABCA4 gene in patients with Stargardt disease to identify associated coding and noncoding variation, however many MD patients still remain genetically unexplained. We hypothesized that the missing heritability of MDs may be revealed by smMIPs-based sequencing of all MD-associated genes and risk factors. Using 17,394 smMIPs, we sequenced the coding regions of 105 iMD and AMD-associated genes and noncoding or regulatory loci, known pseudo-exons, and the mitochondrial genome in two test cohorts that were previously screened for variants in ABCA4. Following detailed sequencing analysis of 110 probands, a diagnostic yield of 38% was observed. This established an ''MD-smMIPs panel," enabling a genotype-first approach in a high-throughput and cost-effective manner, whilst achieving uniform and high coverage across targets. Further analysis will identify known and novel variants in MD-associated genes to offer an accurate clinical diagnosis to patients. Furthermore, this will reveal new genetic associations for MD and potential genetic overlaps between iMD and AMD.
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- 2022
10. A Missense Variant in the Bardet-Biedl Syndrome 2 Gene (BBS2) Leads to a Novel Syndromic Retinal Degeneration in the Shetland Sheepdog
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Maria Kaukonen, Louise M. Burmeister, Hannes Lohi, Inka Pettinen, Frode Lingaas, David R. Sargan, Rebekkah J. Hitti-Malin, Cathryn S. Mellersh, Burmeister, Louise [0000-0002-6551-055X], Kaukonen, Maria [0000-0002-2146-4694], Pettinen, Inka [0000-0002-7632-3936], Lohi, Hannes [0000-0003-1087-5532], Sargan, David [0000-0001-9897-2489], Apollo - University of Cambridge Repository, Medicum, Hannes Tapani Lohi / Principal Investigator, Veterinary Biosciences, Department of Medical and Clinical Genetics, Helsinki One Health (HOH), Veterinary Genetics, Biosciences, and Burmeister, Louise M [0000-0002-6551-055X]
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Male ,BBS2 ,syndromic ,QH426-470 ,urologic and male genital diseases ,MOUSE ,413 Veterinary science ,FAMILIES ,DISEASE ,BBS ,Exon ,0302 clinical medicine ,Missense mutation ,Dog Diseases ,Genetics (clinical) ,Progressive retinal atrophy ,Genetics ,0303 health sciences ,female genital diseases and pregnancy complications ,3. Good health ,Phenotype ,Female ,hormones, hormone substitutes, and hormone antagonists ,circulatory and respiratory physiology ,animal structures ,PROTEINS ,Mutation, Missense ,canine ,RETINOPATHY ,Biology ,DIAGNOSIS ,03 medical and health sciences ,Dogs ,Bardet–Biedl syndrome ,LINKED RETINITIS-PIGMENTOSA ,medicine ,Animals ,Genotyping ,030304 developmental biology ,Shetland ,Neurodevelopmental disorders Donders Center for Medical Neuroscience [Radboudumc 7] ,Wolves ,Whole Genome Sequencing ,MUTATIONS ,medicine.disease ,FRAMEWORK ,MODEL ,PRA ,Shetland Sheepdog ,retinal degeneration ,Hybridization, Genetic ,030217 neurology & neurosurgery - Abstract
Canine progressive retinal atrophy (PRA) describes a group of hereditary diseases characterized by photoreceptor cell death in the retina, leading to visual impairment. Despite the identification of multiple PRA-causing variants, extensive heterogeneity of PRA is observed across and within dog breeds, with many still genetically unsolved. This study sought to elucidate the causal variant for a distinct form of PRA in the Shetland sheepdog, using a whole-genome sequencing approach. Filtering variants from a single PRA-affected Shetland sheepdog genome compared to 176 genomes of other breeds identified a single nucleotide variant in exon 11 of the Bardet–Biedl syndrome-2 gene (BBS2) (c.1222G>, C, p.Ala408Pro). Genotyping 1386 canids of 155 dog breeds, 15 cross breeds and 8 wolves indicated the c.1222G>, C variant was only segregated within Shetland sheepdogs. Out of 505 Shetland sheepdogs, seven were homozygous for the variant. Clinical history and photographs for three homozygotes indicated the presence of a novel phenotype. In addition to PRA, additional clinical features in homozygous dogs support the discovery of a novel syndromic PRA in the breed. The development and utilization of a diagnostic DNA test aim to prevent the mutation from becoming more prevalent in the breed.
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- 2021
11. A Missense Variant in the Bardet-Biedl Syndrome 2 Gene (
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Rebekkah J, Hitti-Malin, Louise M, Burmeister, Frode, Lingaas, Maria, Kaukonen, Inka, Pettinen, Hannes, Lohi, David, Sargan, and Cathryn S, Mellersh
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Male ,Wolves ,Whole Genome Sequencing ,Retinal Degeneration ,Mutation, Missense ,Proteins ,canine ,syndromic ,Article ,BBS ,Dogs ,Phenotype ,PRA ,Animals ,Hybridization, Genetic ,Female ,BBS2 ,Dog Diseases - Abstract
Canine progressive retinal atrophy (PRA) describes a group of hereditary diseases characterized by photoreceptor cell death in the retina, leading to visual impairment. Despite the identification of multiple PRA-causing variants, extensive heterogeneity of PRA is observed across and within dog breeds, with many still genetically unsolved. This study sought to elucidate the causal variant for a distinct form of PRA in the Shetland sheepdog, using a whole-genome sequencing approach. Filtering variants from a single PRA-affected Shetland sheepdog genome compared to 176 genomes of other breeds identified a single nucleotide variant in exon 11 of the Bardet–Biedl syndrome-2 gene (BBS2) (c.1222G>C; p.Ala408Pro). Genotyping 1386 canids of 155 dog breeds, 15 cross breeds and 8 wolves indicated the c.1222G>C variant was only segregated within Shetland sheepdogs. Out of 505 Shetland sheepdogs, seven were homozygous for the variant. Clinical history and photographs for three homozygotes indicated the presence of a novel phenotype. In addition to PRA, additional clinical features in homozygous dogs support the discovery of a novel syndromic PRA in the breed. The development and utilization of a diagnostic DNA test aim to prevent the mutation from becoming more prevalent in the breed.
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- 2021
12. Charcot-Marie-Tooth type 4B2 demyelinating neuropathy in miniature Schnauzer dogs caused by a novel splicing SBF2 (MTMR13) genetic variant: a new spontaneous clinical model
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Joshua Hersheson, Henry Houlden, Alejandro Luján Feliu-Pascual, Oliver P. Forman, Rebekkah J. Hitti, Charlotte Spicer, Nicolas Granger, and Sally L. Ricketts
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Veterinary Medicine ,Demyelinating neuropathy ,lcsh:Medicine ,Genome-wide association study ,General Biochemistry, Genetics and Molecular Biology ,Canine ,03 medical and health sciences ,0302 clinical medicine ,SET-binding factor 2 ,Genotype ,medicine ,Genetics ,Animal model ,Muscular dystrophy ,Spontaneous disease ,Gene ,Genome wide association screen ,Genetic variant ,030304 developmental biology ,0303 health sciences ,Autosome ,biology ,General Neuroscience ,lcsh:R ,Charcot-Marie-Tooth diseases ,General Medicine ,medicine.disease ,Myelin basic protein ,Peripheral neuropathy ,Neurology ,biology.protein ,Inherited polyneuropathy ,General Agricultural and Biological Sciences ,Chromosome 21 ,030217 neurology & neurosurgery ,Myotubularine related proteins - Abstract
BackgroundCharcot-Marie-Tooth (CMT) disease is the most common neuromuscular disorder in humans affecting 40 out of 100,000 individuals. In 2008, we described the clinical, electrophysiological and pathological findings of a demyelinating motor and sensory neuropathy in Miniature Schnauzer dogs, with a suspected autosomal recessive mode of inheritance based on pedigree analysis. The discovery of additional cases has followed this work and led to a genome-wide association mapping approach to search for the underlying genetic cause of the disease.MethodsFor genome wide association screening, genomic DNA samples from affected and unaffected dogs were genotyped using the Illumina CanineHD SNP genotyping array.SBF2and its variant were sequenced using primers and PCRs. RNA was extracted from muscle of an unaffected and an affected dog and RT-PCR performed. Immunohistochemistry for myelin basic protein was performed on peripheral nerve section specimens.ResultsThe genome-wide association study gave an indicative signal on canine chromosome 21. Although the signal was not of genome-wide significance due to the small number of cases, theSBF2(also known asMTMR13)gene within the region of shared case homozygosity was a strong positional candidate, as 22 genetic variants in the gene have been associated with demyelinating forms of Charcot-Marie-Tooth disease in humans. Sequencing ofSBF2in cases revealed a splice donor site genetic variant, resulting in cryptic splicing and predicted early termination of the protein based on RNA sequencing results.ConclusionsThis study reports the first genetic variant in Miniature Schnauzer dogs responsible for the occurrence of a demyelinating peripheral neuropathy with abnormally folded myelin. This discovery establishes a genotype/phenotype correlation in affected Miniature Schnauzers that can be used for the diagnosis of these dogs. It further supports the dog as a natural model of a human disease; in this instance, Charcot-Marie-Tooth disease. It opens avenues to search the biological mechanisms responsible for the disease and to test new therapies in a non-rodent large animal model. In particular, recent gene editing methods that led to the restoration of dystrophin expression in a canine model of muscular dystrophy could be applied to other canine models such as this before translation to humans.
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- 2019
13. Clinical, histopathological and genetic characterisation of oculoskeletal dysplasia in the Northern Inuit Dog
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Louise Pettitt, Roser Tetas Pont, Renata Stavinohova, Cathryn S. Mellersh, Louise M. Burmeister, Sally L. Ricketts, Claudia Hartley, Ellen Schofield, James A. C. Oliver, and Rebekkah J. Hitti
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0301 basic medicine ,Candidate gene ,Dwarfism ,Pathology and Laboratory Medicine ,0403 veterinary science ,Genotype ,Medicine and Health Sciences ,Dog Diseases ,2. Zero hunger ,Mammals ,Multidisciplinary ,Eye Lens ,Pets and Companion Animals ,Eukaryota ,04 agricultural and veterinary sciences ,Pedigree ,Vertebrates ,Medicine ,Retinal Disorders ,Anatomy ,Research Article ,Dysplasia ,040301 veterinary sciences ,Science ,Ocular Anatomy ,Animal Types ,Single-nucleotide polymorphism ,Biology ,Polymorphism, Single Nucleotide ,Collagen Type IX ,03 medical and health sciences ,Dogs ,Signs and Symptoms ,Ocular System ,Diagnostic Medicine ,medicine ,Genetics ,Animals ,Oculoskeletal dysplasia ,Allele ,Allele frequency ,Alleles ,Cataracts ,Organisms ,Retinal Detachment ,Biology and Life Sciences ,medicine.disease ,Molecular biology ,Ophthalmology ,030104 developmental biology ,Genetic Loci ,Lens Disorders ,Amniotes ,Mutation ,Retinal dysplasia ,Eyes ,Head ,Zoology - Abstract
Seven Northern Inuit Dogs (NID) were diagnosed by pedigree analysis with an autosomal recessive inherited oculoskeletal dysplasia (OSD). Short-limbed dwarfism, angular limb deformities and a variable combination of macroglobus, cataracts, lens coloboma, microphakia and vitreopathy were present in all seven dogs, while retinal detachment was diagnosed in five dogs. Autosomal recessive OSD caused by COL9A3 and COL9A2 mutations have previously been identified in the Labrador Retriever (dwarfism with retinal dysplasia 1-drd1) and Samoyed dog (dwarfism with retinal dysplasia 2-drd2) respectively; both of those mutations were excluded in all affected NID. Nine candidate genes were screened in whole genome sequence data; only one variant was identified that was homozygous in two affected NID but absent in controls. This variant was a nonsense single nucleotide polymorphism in COL9A3 predicted to result in a premature termination codon and a truncated protein product. This variant was genotyped in a total of 1,232 dogs. All seven affected NID were homozygous for the variant allele (T/T), while 31/116 OSD-unaffected NID were heterozygous for the variant (C/T) and 85/116 were homozygous for the wildtype allele (C/C); indicating a significant association with OSD (p = 1.41x10-11). A subset of 56 NID unrelated at the parent level were analysed to determine an allele frequency of 0.08, estimating carrier and affected rates to be 15% and 0.6% respectively in NID. All 1,109 non-NID were C/C, suggesting the variant is rare or absent in other breeds. Expression of retinal mRNA was similar between an OSD-affected NID and OSD-unaffected non-NID. In conclusion, a nonsense variant in COL9A3 is strongly associated with OSD in NID, and appears to be widespread in this breed.
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- 2019
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14. Whole Genome Sequencing of Giant Schnauzer Dogs with Progressive Retinal Atrophy Establishes NECAP1 as a Novel Candidate Gene for Retinal Degeneration
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Rebekkah J. Hitti, David R. Sargan, Maria Kaukonen, Cathryn S. Mellersh, Louise M. Burmeister, Anina Bauer, James A. C. Oliver, Hannes Lohi, Ellen Schofield, Oliver P. Forman, Tosso Leeb, Hannes Tapani Lohi / Principal Investigator, Veterinary Biosciences, University of Helsinki, Department of Medical and Clinical Genetics, Veterinary Genetics, Medicum, Helsinki One Health (HOH), Schofield, Ellen C [0000-0003-0648-1418], Kaukonen, Maria [0000-0002-2146-4694], Leeb, Tosso [0000-0003-0553-4880], Burmeister, Louise M [0000-0002-6551-055X], Sargan, David [0000-0001-9897-2489], and Apollo - University of Cambridge Repository
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0301 basic medicine ,Proband ,Retinal degeneration ,Candidate gene ,ROD-CONE DEGENERATION ,Breeding ,413 Veterinary science ,chemistry.chemical_compound ,0302 clinical medicine ,Dog Diseases ,Frameshift Mutation ,MUTATION ,Genetics (clinical) ,2. Zero hunger ,Progressive retinal atrophy ,Genetics ,biology ,1184 Genetics, developmental biology, physiology ,DYSTROPHY ,dog ,590 Animals (Zoology) ,Giant schnauzer ,Genotype ,lcsh:QH426-470 ,Dachshund ,ENDOCYTOSIS ,biology.animal_breed ,INSERTION ,canine ,610 Medicine & health ,Retina ,03 medical and health sciences ,Adaptor Protein Complex alpha Subunits ,Dogs ,medicine ,Animals ,Humans ,Allele frequency ,Whole Genome Sequencing ,IDENTIFICATION ,DELETION ,Retinal ,medicine.disease ,FRAMEWORK ,progressive retinal atrophy ,MODEL ,lcsh:Genetics ,030104 developmental biology ,PRA ,chemistry ,Synapses ,retinal degeneration ,570 Life sciences ,TERRIER ,Atrophy ,030217 neurology & neurosurgery ,Genome-Wide Association Study - Abstract
Canine progressive retinal atrophies (PRA) are genetically heterogeneous diseases characterized by retinal degeneration and subsequent blindness. PRAs are untreatable and affect multiple dog breeds, significantly impacting welfare. Three out of seven Giant Schnauzer (GS) littermates presented with PRA around four years of age. We sought to identify the causal variant to improve our understanding of the aetiology of this form of PRA and to enable development of a DNA test. Whole genome sequencing of two PRA-affected full-siblings and both unaffected parents was performed. Variants were filtered based on those segregating appropriately for an autosomal recessive disorder and predicted to be deleterious. Successive filtering against 568 canine genomes identified a single nucleotide variant in the gene encoding NECAP endocytosis associated 1 (NECAP1): c.544G>, A (p.Gly182Arg). Five thousand one hundred and thirty canids of 175 breeds, 10 cross-breeds and 3 wolves were genotyped for c.544G>, A. Only the three PRA-affected GS were homozygous (allele frequency in GS, excluding proband family = 0.015). In addition, we identified heterozygotes belonging to Spitz and Dachshund varieties, demonstrating c.544G>, A segregates in other breeds of German origin. This study, in parallel with the known retinal expression and role of NECAP1 in clathrin mediated endocytosis (CME) in synapses, presents NECAP1 as a novel candidate gene for retinal degeneration in dogs and other species.
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- 2019
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15. An Inversion Disrupting FAM134B Is Associated with Sensory Neuropathy in the Border Collie Dog Breed
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Luisa De Risio, Elsa Beltran, Christopher A. Jenkins, Louise Pettitt, Dennis P. O'Brien, Rebekkah J. Hitti, G. Diane Shelton, Cathryn S. Mellersh, Oliver P. Forman, and Rodrigo Gutierrez Quintana
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0301 basic medicine ,Male ,Candidate gene ,Genotype ,Population ,Motor nerve ,canine ,Locus (genetics) ,Genome-wide association study ,QH426-470 ,Biology ,Investigations ,Breeding ,03 medical and health sciences ,Exon ,Dogs ,sensory neuropathy ,Genetics ,GWAS ,Animals ,Humans ,Genetic Predisposition to Disease ,Hereditary Sensory and Autonomic Neuropathies ,education ,Molecular Biology ,Genotyping ,Genetics (clinical) ,Motor Neurons ,education.field_of_study ,Base Sequence ,Intracellular Signaling Peptides and Proteins ,Chromosome Mapping ,Membrane Proteins ,Exons ,Neoplasm Proteins ,genome sequencing ,030104 developmental biology ,Border Collie ,Chromosome Inversion ,Mutation ,Female ,RNA Splice Sites ,FAM134B ,Genome-Wide Association Study - Abstract
Sensory neuropathy in the Border Collie is a severe neurological disorder caused by the degeneration of sensory and, to a lesser extent, motor nerve cells with clinical signs starting between 2 and 7 months of age. Using a genome-wide association study approach with three cases and 170 breed matched controls, a suggestive locus for sensory neuropathy was identified that was followed up using a genome sequencing approach. An inversion disrupting the candidate gene FAM134B was identified. Genotyping of additional cases and controls and RNAseq analysis provided strong evidence that the inversion is causal. Evidence of cryptic splicing resulting in novel exon transcription for FAM134B was identified by RNAseq experiments. This investigation demonstrates the identification of a novel sensory neuropathy associated mutation, by mapping using a minimal set of cases and subsequent genome sequencing. Through mutation screening, it should be possible to reduce the frequency of or completely eliminate this debilitating condition from the Border Collie breed population.
- Published
- 2016
16. Canine genome assembly correction facilitates identification of a MAP9 deletion as a potential age of onset modifier for RPGRIP1-associated canine retinal degeneration
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Cathryn S. Mellersh, Mike Boursnell, Oliver P. Forman, David R. Sargan, Keiko Miyadera, Rebekkah J. Hitti, Sargan, David [0000-0001-9897-2489], Mellersh, Cathryn [0000-0002-2336-0370], and Apollo - University of Cambridge Repository
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0301 basic medicine ,Retinal degeneration ,Population ,Late onset ,Locus (genetics) ,Biology ,03 medical and health sciences ,Exon ,0302 clinical medicine ,Dogs ,Genetics ,medicine ,Animals ,Humans ,Dog Diseases ,education ,Sequence Deletion ,education.field_of_study ,Genome ,Homozygote ,Retinal Degeneration ,Dystrophy ,Proteins ,Molecular Sequence Annotation ,Exons ,medicine.disease ,Molecular biology ,Pedigree ,Cytoskeletal Proteins ,030104 developmental biology ,Mutation ,030221 ophthalmology & optometry ,Tandem exon duplication ,Age of onset ,Microtubule-Associated Proteins ,Genome-Wide Association Study - Abstract
Retinal degeneration (RD) in the Miniature Long Haired Dachshund (MLHD) is a cone-rod dystrophy resulting in eventual blindness in affected individuals. In a previous study, a 44-nucleotide insertion (ins44) in exon 2 of RPGRIP1 was associated with RD. However, results on an extended population of MLHD revealed a variable RD onset age for ins44 homozygous dogs. Further investigations using a genome-wide association study comparing early onset and late onset RD cases identified an age of onset modifying locus for RD, approximately 30 Mb upstream of RPGRIP1 on chr15. In this investigation, target enriched sequencing identified a MAP9 deletion spanning approximately 22 kb associated with early RD onset. Identification of the deletion required correction to the CanFam3.1 genome build as canine MAP9 is part of a historic tandem duplication, resulting in incomplete assembly of this genome region. The deletion breakpoints were identified in MAP9 intron 10 and in a downstream partial MAP9 pseudogene. The fusion of these two genes, which we have called MAP9 EORD (microtubule-associated protein, early onset retinal degeneration), is in frame and is expressed at the RNA level, with the 3' region containing several predicted deleterious variants. We speculate that MAP9 associates with α-tubulin in the basal body of the cilium. RPGRIP1 is also known to locate to the cilium, where it is closely associated with RPGR. RPGRIP1 mutations also cause redistribution of α-tubulin away from the ciliary region in photoreceptors. Hence, a MAP9 partial deficit is a particularly attractive candidate to synergise with a partial RPGRIP1 deficit to cause a more serious disease.
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- 2015
17. Genome Sequence and Comparative Analysis of the Solvent-Producing BacteriumClostridium acetobutylicum
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H M Lee, Fabrice Sabathé, George N. Bennett, Roman L. Tatusov, G Breton, Jean-Yves F. Dubois, J Hitti, R Gibson, Michael J. Daly, J Nölling, Lynn Doucette-Stamm, Yuri I. Wolf, M. V. Omelchenko, D Qiu, Eugene V. Koonin, Douglas Smith, Kira S. Makarova, Qiandong Zeng, and Philippe Soucaille
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Clostridium acetobutylicum ,Molecular Sequence Data ,Genetics and Molecular Biology ,Sequence alignment ,Bacillus subtilis ,Biology ,Models, Biological ,Microbiology ,Genome ,Bacterial Proteins ,Operon ,Amino Acid Sequence ,Molecular Biology ,Gene ,Conserved Sequence ,Phylogeny ,Genomic organization ,Clostridium ,Genetics ,Whole genome sequencing ,Base Sequence ,Sequence Homology, Amino Acid ,Chromosomes, Bacterial ,biology.organism_classification ,Enzymes ,Genes, Bacterial ,Horizontal gene transfer ,Solvents ,Sequence Alignment ,Genome, Bacterial ,Plasmids - Abstract
The genome sequence of the solvent-producing bacteriumClostridium acetobutylicumATCC 824 has been determined by the shotgun approach. The genome consists of a 3.94-Mb chromosome and a 192-kb megaplasmid that contains the majority of genes responsible for solvent production. Comparison ofC. acetobutylicumtoBacillus subtilisreveals significant local conservation of gene order, which has not been seen in comparisons of other genomes with similar, or, in some cases closer, phylogenetic proximity. This conservation allows the prediction of many previously undetected operons in both bacteria. However, theC. acetobutylicumgenome also contains a significant number of predicted operons that are shared with distantly related bacteria and archaea but not withB. subtilis. Phylogenetic analysis is compatible with the dissemination of such operons by horizontal transfer. The enzymes of the solventogenesis pathway and of the cellulosome ofC. acetobutylicumcomprise a new set of metabolic capacities not previously represented in the collection of complete genomes. These enzymes show a complex pattern of evolutionary affinities, emphasizing the role of lateral gene exchange in the evolution of the unique metabolic profile of the bacterium. Many of the sporulation genes identified inB. subtilisare missing inC. acetobutylicum, which suggests major differences in the sporulation process. Thus, comparative analysis reveals both significant conservation of the genome organization and pronounced differences in many systems that reflect unique adaptive strategies of the two gram-positive bacteria.
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- 2001
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18. Initial Multicenter Experience With Double Nucleoside Therapy for Human Immunodeficiency Virus Infection During Pregnancy
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Neil S. Silverman, Elizabeth Livingston, Deborah Money, J.M. Ernest, M. M. DiVito, D. H. Watts, J. Axelrod, D. Robbins, and J. Hitti
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Pediatrics ,Human immunodeficiency virus (HIV) ,HIV Infections ,medicine.disease_cause ,Pregnancy ,Prospective Studies ,Pregnancy Complications, Infectious ,Mean corpuscular volume ,medicine.diagnostic_test ,Obstetrics ,Pregnancy Outcome ,Gestational age ,Lamivudine ,Obstetrics and Gynecology ,Treatment Outcome ,Infectious Diseases ,Drug Therapy, Combination ,Female ,Zidovudine ,Research Article ,medicine.drug ,Adult ,Canada ,medicine.medical_specialty ,Article Subject ,Anti-HIV Agents ,Anemia ,Dermatology ,lcsh:Gynecology and obstetrics ,Statistics, Nonparametric ,lcsh:Infectious and parasitic diseases ,Pharmacotherapy ,Confidence Intervals ,medicine ,Humans ,lcsh:RC109-216 ,lcsh:RG1-991 ,business.industry ,medicine.disease ,Infectious Disease Transmission, Vertical ,United States ,Surgery ,Immunology ,Liver function ,business ,Nucleoside ,Follow-Up Studies - Abstract
Objective:To study maternal and neonatal effects of combination nucleoside analog therapy administered to human immunodeficiency virus (HIV)-infected pregnant women for maternal indications.Methods:A multicenter, prospective observational study was undertaken at six perinatal centers in the United States and Canada that supported regional referral programs for the treatment of HIV-infected pregnant women. Demographic, laboratory, and pregnancy outcome data were collected for 39 women whose antiretroviral treatment regimens were expanded to include more than one nucleoside analog for maternal indications. The 40 newborns were monitored at pediatric referral centers through at least three months of age to ascertain their HIV infection status.Results:For all 39 women, zidovudine (ZDV) therapy was instituted at 13.4 ± 8.2 weeks, with a second agent (lamivudine [3TC] in 85% of cases) being added at a mean gestational age of 17.6 weeks. Duration of therapy with two agents was 20.6±10.4 weeks overall, with no women stopping medications because of side effects or toxicity. No significant changes in maternal laboratory values were seen, except for an increase in mean corpuscular volume, over the course of pregnancy. No clinically significant adverse neonatal outcomes were noted, with all but the three preterm newborns leaving hospital with their mothers. Neonatal anemia (hematocrit < 50%) was seen in 62% of newborns, with no children needing transfusion; mild elevations of liver function tests, primarily aspartate aminotransferase, were noted in 58% of newborns tested, though none were clinically jaundiced. Overall rate of neonatal HIV infection was 2.5% (95% confidence interval: 0.1–13.2%).Conclusion:Combination antiretroviral therapy during pregnancy with two nucleoside analogs was well-tolerated by mothers and newborns, with no significant short-term toxicities or side effects noted. Surveillance of exposed newborns’ hematologic and liver function appears warranted.
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- 1998
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19. Genetic screening for PRA-associated mutations in multiple dog breeds shows that PRA is heterogeneous within and between breeds
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Louise M. Downs, Cathryn S. Mellersh, Silvia Pregnolato, and Rebekkah J. Hitti
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Genetics ,Sanger sequencing ,Progressive retinal atrophy ,General Veterinary ,Genetic heterogeneity ,Retinal Degeneration ,DNA ,Biology ,medicine.disease ,Breed ,Fragment size ,symbols.namesake ,Dogs ,Mutation (genetic algorithm) ,Mutation ,symbols ,medicine ,media_common.cataloged_instance ,Animals ,Genetic Predisposition to Disease ,Dog Diseases ,Allele ,Eye Proteins ,Standard poodle ,media_common - Abstract
Objective To assess the extent of progressive retinal atrophy (PRA) genetic heterogeneity within and between domestic dog breeds. Methods DNA from 231 dogs with PRA, representing 36 breeds, was screened for 17 mutations previously associated with PRA in at least one breed of dog. Screening methods included amplified fragment size discrimination using gel electrophoresis or detection of fluorescence, (TaqMan®; Life Technologies, Carlsbad, CA, USA) allelic discrimination, and Sanger sequencing. Results Of the 231 dogs screened, 129 were homozygous for a PRA-associated mutation, 29 dogs were carriers, and 73 were homozygous for the wild-type allele at all loci tested. In two of the 129 dogs, homozygous mutations were identified that had not previously been observed in the respective breeds: one Chinese Crested dog was homozygous for the RCD3-associated mutation usually found in the Cardigan Welsh Corgi, and one Standard Poodle was homozygous for the RCD4-associated mutation previously reported to segregate in Gordon and Irish Setters. In the majority of the breeds (15/21) in which a PRA-associated mutation is known to segregate, cases were identified that did not carry any of the known PRA-associated mutations. Conclusion Progressive retinal atrophy in the dog displays significant genetic heterogeneity within as well as between breeds. There are also several instances where PRA-associated mutations segregate among breeds with no known close ancestry.
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- 2013
20. Amniotic fluid interleukin-6 and preterm delivery: a review
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A Y, El-Bastawissi, M A, Williams, D E, Riley, J, Hitti, and J N, Krieger
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C-Reactive Protein ,Obstetric Labor, Premature ,Interleukin-6 ,Predictive Value of Tests ,Pregnancy ,Cytokines ,Humans ,Female ,Amniotic Fluid ,Polymerase Chain Reaction ,Sensitivity and Specificity - Abstract
To evaluate the potential role of amniotic fluid (AF) interleukin (IL)-6 as a predictor of preterm delivery and to consider possible explanations for the proportion of women with elevated AF IL-6 who deliver preterm yet lack microbiologically detectable intra-amniotic infection.We searched the English language human literature in MEDLINE, 1966 through September 1999, using the keywords "labor/infant," "premature," "cytokines/interleukin-6," and "AF." We also examined abstracts from the 1999 meetings of the Society for Maternal-Fetal Medicine and the Society for Epidemiologic Research. We identified other studies by reviewing the reference lists of published articles.The MEDLINE search yielded 55 citations. We focused on studies that reported on the association between AF IL-6 and preterm delivery.There is consensus in the literature that elevated AF IL-6 is a stronger predictor of preterm delivery than intra-amniotic infection detected by either microbiologic culture or polymerase chain reaction (PCR). Among women with elevated AF IL-6, PCR could detect a higher proportion of intra-amniotic infection than culture. A number of women with elevated AF IL-6 (33-70%) deliver preterm and do not have evidence of intra-amniotic infection by either culture or PCR. Possible explanations for this observation are considered.Elevated AF IL-6 is strongly associated with preterm delivery and merits future consideration in clinical settings to predict preterm delivery and guide patient care. Development of improved polymerase chain reaction-based clinical methods to detect intra-amniotic infection is necessary to better understand the relationship between elevated AF IL-6, intra-amniotic infection, and preterm delivery.
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- 2000
21. Herpes simplex virus seropositivity and reactivation at delivery among pregnant women infected with human immunodeficiency virus-1
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S. Selke, J. Hitti, D. H. Watts, Z. A. Brown, Sandra K. Burchett, T. Schacker, and L. Corey
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viruses ,medicine.disease_cause ,Antibodies, Viral ,Herpesviridae ,Virus ,Serology ,Acquired immunodeficiency syndrome (AIDS) ,Pregnancy ,Alphaherpesvirinae ,medicine ,Humans ,Simplexvirus ,Pregnancy Complications, Infectious ,Sida ,Acquired Immunodeficiency Syndrome ,Labor, Obstetric ,biology ,business.industry ,Racial Groups ,Age Factors ,Obstetrics and Gynecology ,Herpes Simplex ,biology.organism_classification ,medicine.disease ,Virology ,Herpes simplex virus ,Immunology ,Female ,Virus Activation ,Viral disease ,business - Abstract
Our purpose was to determine whether pregnant women infected with human immunodeficiency virus-1 have an increased risk of herpes simplex virus-2 seropositivity and herpes simplex virus reactivation at delivery.Sixty women infected with human immunodeficiency virus and 8408 other patients who were delivered at the University of Washington between 1989 and 1995 had herpes simplex virus serologic determinations at delivery. Genital herpes simplex virus cultures were obtained for 48 (80%) of the human immunodeficiency virus-infected women and 5567 (66%) of the controls. Logistic regression was used to adjust for possible confounding factors.Forty-five (75%) of human immunodeficiency virus-infected women and 2709 (32%) controls were seropositive for herpes simplex virus-2 (p0.0001). Eight percent of human immunodeficiency virus-infected women and 2% of controls had herpes simplex virus reactivation in labor (p0.05).Infection with herpes simplex virus-2 is common among pregnant women infected with human immunodeficiency virus. Herpes simplex virus reactivation complicates labor in this group more often than in other obstetric patients. The role of herpes simplex virus in perinatal human immunodeficiency virus transmission warrants further study.
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- 1997
22. Effect of pregnancy and zidovudine therapy on viral load in HIV-1-infected women
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D. H. Watts, J. P. Hughes, E. J. Johnson, B. L. Williams, C. L. McLellan, J. Hitti, R. W. Coombs, Sandra K. Burchett, Ann J. Melvin, Lisa M. Frenkel, and P. D. King
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Washington ,Virus Cultivation ,Anti-HIV Agents ,Immunology ,Physiology ,HIV Infections ,Cohort Studies ,Zidovudine ,Acquired immunodeficiency syndrome (AIDS) ,Pregnancy ,Virology ,Immunology and Allergy ,Medicine ,Humans ,Prospective Studies ,Pregnancy Complications, Infectious ,Sida ,biology ,business.industry ,Infant, Newborn ,virus diseases ,Viral Load ,medicine.disease ,biology.organism_classification ,Infectious Disease Transmission, Vertical ,HIV-1 ,Gestation ,RNA, Viral ,Female ,Viral disease ,business ,Viral load ,Postpartum period ,medicine.drug - Abstract
The objective of this study was to determine the effect of pregnancy and zidovudine (ZDV) on viral load in HIV-1 infected women. A prospective nonrandomized cohort study was conducted at a university medical center and affiliated clinic and included 44 HIV-1-seropositive pregnant women seen between June 1991 and September 1995. Twenty-three women initiated ZDV therapy during their pregnancy. Seventeen women did not take antiretrovirals, and four women took ZDV prior to and throughout pregnancy. HIV-1 viral load as determined by quantitative peripheral blood mononuclear cell (PBMC) culture and quantitative plasma RNA levels was measured at various times during pregnancy and in the postpartum period. HIV-1 load, by both infectivity and RNA levels, was relatively low and remained stable during pregnancy and through 6 weeks post partum. Initiation of ZDV therapy during pregnancy did not result in a significant decrease in viral load at delivery when controlling for the effect of pregnancy. In those women who received ZDV therapy only during pregnancy, there was a trend toward an increase in viral load measured by PBMC infectivity 6 months post partum compared with the levels before the initiation of ZDV. Mother-to-child transmission of HIV-1 occurred in one of 27 (4%) ZDV-treated women and in two of 16 (12.5%) untreated women. Among HIV-1-infected pregnant women with low viral levels, HIV-1 plasma RNA and infectivity remained stable during and after gestation. Although these results are based on a relatively small number of women and should be considered preliminary, the lack of significant ZDV-associated diminution in viral levels suggests that the protective effect of ZDV on the mother-to-child transmission of HIV-1 may not be due to the reduction in maternal viral levels but, by inference, may be due to the prevention of HIV-1 reverse transcription in the newborn.
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- 1997
23. The gene number dilemma: direct evidence for at least 19,000 protein-encoding genes in Caenorhabditis elegans and implications for the human genome
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David E. Hill, J. Reboul, P. Vaglio, N. Tzellas, C. Jackson, T. Moore, Y. Kohara, J. Thierry-Mieg, D. Thierry-Mieg, J. Hitti, L. Doucette-Stamm, J. Hartley, G. Temple, M. Brasch, D.E. Hill, and M. Vidal
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Genetics - Published
- 2001
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24. Saliva cotinine as a measure of smoking status in field settings
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J Hitti, L. Biener, Michael J. Follick, Kate B. Carey, and David B. Abrams
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Adult ,Male ,medicine.medical_specialty ,Saliva ,medicine.medical_treatment ,Radioimmunoassay ,Biological fluid ,Saliva analysis ,chemistry.chemical_compound ,Saliva collection ,stomatognathic system ,Internal medicine ,medicine ,Humans ,Cotinine ,business.industry ,Smoking ,Public Health, Environmental and Occupational Health ,Pyrrolidinones ,Surgery ,chemistry ,Smoking cessation ,Female ,Smoking status ,business ,Research Article - Abstract
The accuracy and reliability of saliva cotinine as an objective measure of smoking status was examined in two field studies. In Study I, saliva was collected from smokers and nonsmokers with repeated samples taken from a randomly selected subset of the smokers. Results indicated perfect classification of smokers versus nonsmokers and acceptable reliability of repeated samples. Study II investigated the accuracy of saliva cotinine in detecting recent quitters in a worksite smoking cessation program. Saliva cotinine showed greater accuracy than expired carbon monoxide at detecting quitters, provided they were abstinent for at least seven days. From pre- to post-treatment, subject's saliva cotinine levels dropped 19 per cent while self-reported rate of smoking dropped 54 per cent. Saliva collection in the field is feasible and cotinine appears to be one of the more sensitive assays currently available for epidemiologic and clinical applications.
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- 1987
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25. Genome sequencing reveals a splice donor site mutation in the SNX14 gene associated with a novel cerebellar cortical degeneration in the Hungarian Vizsla dog breed
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Joe Fenn, Christopher A. Jenkins, Cathryn S. Mellersh, R L Terry, Simon L. Priestnall, Patrick J. Kenny, Mike Boursnell, Oliver P. Forman, and Rebekkah J. Hitti
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0301 basic medicine ,Male ,Cerebellum ,Cerebellar abiotrophy ,Ataxia ,040301 veterinary sciences ,Population ,Biology ,medicine.disease_cause ,Genome sequencing ,0403 veterinary science ,03 medical and health sciences ,Dogs ,Cerebellar Diseases ,medicine ,Genetics ,Animals ,Genetics(clinical) ,Dog Diseases ,education ,Sorting Nexins ,Genetics (clinical) ,2. Zero hunger ,education.field_of_study ,Mutation ,Cerebellar cortical degeneration ,Autosomal recessive cerebellar ataxia ,Heterozygote advantage ,04 agricultural and veterinary sciences ,Genomics ,medicine.disease ,people.cause_of_death ,3. Good health ,030104 developmental biology ,medicine.anatomical_structure ,Hungarian Vizsla dog ,Cerebellar atrophy ,Female ,RNA Splice Sites ,medicine.symptom ,people ,Sequence Analysis ,Research Article - Abstract
Background Cerebellar cortical degeneration (CCD) is an increasingly recognised neurodegenerative disease process affecting many dog breeds. Typical presentation consists of a progressive cerebellar ataxia, with a variable age at onset and rate of progression between different breeds. Cerebellar histopathological findings typically consist of primary Purkinje neuronal degeneration and loss, with variable secondary depletion of the granular and molecular cell layers. Causative genes have been identified associated with CCD in several breeds, allowing screening for selective breeding to reduce the prevalence of these conditions. There have been no previous reports of CCD in Hungarian Vizslas. Results Two full-sibling Hungarian Vizsla puppies from a litter of nine presented with a history of progressive ataxia, starting around three months of age. Clinical signs included marked hypermetric and dysmetric ataxia, truncal sway, intention tremors and absent menace responses, with positional horizontal nystagmus in one dog. Routine diagnostic investigations were unremarkable, and magnetic resonance imaging performed in one dog revealed mild craniodorsal cerebellar sulci widening, supportive of cerebellar atrophy. Owners of both dogs elected for euthanasia shortly after the onset of signs. Histopathological examination revealed primary Purkinje neuron loss consistent with CCD. Whole genome sequencing was used to successfully identify a disease-associated splice donor site variant in the sorting nexin 14 gene (SNX14) as a strong causative candidate. An altered SNX14 splicing pattern for a CCD case was demonstrated by RNA analysis, and no SNX14 protein could be detected in CCD case cerebellum by western blotting. SNX14 is involved in maintaining normal neuronal excitability and synaptic transmission, and a mutation has recently been found to cause autosomal recessive cerebellar ataxia and intellectual disability syndrome in humans. Genetic screening of 133 unaffected Hungarian Vizslas revealed the presence of three heterozygotes, supporting the presence of carriers in the wider population. Conclusions This is the first report of CCD in Hungarian Vizsla dogs and identifies a highly associated splice donor site mutation in SNX14, with an autosomal recessive mode of inheritance suspected. Electronic supplementary material The online version of this article (doi:10.1186/s12863-016-0433-y) contains supplementary material, which is available to authorized users.
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26. A LINE-1 insertion situated in the promoter of IMPG2 is associated with autosomal recessive progressive retinal atrophy in Lhasa Apso dogs
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Rebekkah J. Hitti-Malin, Louise M. Burmeister, Sally L. Ricketts, Thomas W. Lewis, Louise Pettitt, Mike Boursnell, Ellen C. Schofield, David Sargan, and Cathryn S. Mellersh
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Canine ,Dog ,Progressive retinal atrophy ,PRA ,Canine retinal degeneration ,Inherited ,Genetics ,QH426-470 - Abstract
Abstract Background Canine progressive retinal atrophies are a group of hereditary retinal degenerations in dogs characterised by depletion of photoreceptor cells in the retina, which ultimately leads to blindness. PRA in the Lhasa Apso (LA) dog has not previously been clinically characterised or described in the literature, but owners in the UK are advised to have their dog examined through the British Veterinary Association/ Kennel Club/ International Sheep Dog Society (BVA/KC/ISDS) eye scheme annually, and similar schemes that are in operation in other countries. After the exclusion of 25 previously reported canine retinal mutations in LA PRA-affected dogs, we sought to identify the genetic cause of PRA in this breed. Results Analysis of whole-exome sequencing data of three PRA-affected LA and three LA without signs of PRA did not identify any exonic or splice site variants, suggesting the causal variant was non-exonic. We subsequently undertook a genome-wide association study (GWAS), which identified a 1.3 Mb disease-associated region on canine chromosome 33, followed by whole-genome sequencing analysis that revealed a long interspersed element-1 (LINE-1) insertion upstream of the IMPG2 gene. IMPG2 has previously been implicated in human retinal disease; however, until now no canine PRAs have been associated with this gene. The identification of this PRA-associated variant has enabled the development of a DNA test for this form of PRA in the breed, here termed PRA4 to distinguish it from other forms of PRA described in other breeds. This test has been used to determine the genotypes of over 900 LA dogs. A large cohort of genotyped dogs was used to estimate the allele frequency as between 0.07–0.1 in the UK LA population. Conclusions Through the use of GWAS and subsequent sequencing of a PRA case, we have identified a LINE-1 insertion in the retinal candidate gene IMPG2 that is associated with a form of PRA in the LA dog. Validation of this variant in 447 dogs of 123 breeds determined it was private to LA dogs. We envisage that, over time, the developed DNA test will offer breeders the opportunity to avoid producing dogs affected with this form of PRA.
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- 2020
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27. Racial Disparity in Severe Maternal Morbidity Associated with Hypertensive Disorders in Washington State: A Retrospective Cohort Study.
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Albright CM, Sienas L, Pike M, Walker S, and Hitti J
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- Adult, Female, Humans, Pregnancy, Cohort Studies, Ethnicity statistics & numerical data, Health Status Disparities, Hypertension, Pregnancy-Induced ethnology, Hypertension, Pregnancy-Induced epidemiology, Morbidity trends, Prevalence, Retrospective Studies, Washington epidemiology, Black or African American, Hypertension ethnology, Hypertension epidemiology, Hypertension complications
- Abstract
Objectives: To evaluate the relationship between hypertensive (HTN) disorders and severe maternal morbidity (SMM). To understand whether there is differential prevalence of HTN disorders by race and whether the relationship between HTN disorders and SMM is modified by race and ethnicity., Methods: We performed a retrospective cohort study using patient-level rates of SMM for pregnancies at all 61 non-military hospitals in Washington State from 10/2015 to 9/2016. Data were obtained from the Washington State Comprehensive Hospital Abstract Reporting System. Adjusted odds ratios (OR) and 95% confidence intervals (CI) were calculated to evaluate the association of HTN disorders and SMM (with and without transfusion) overall and by race. The population-attributable fraction of HTN disorders on SMM within each racial/ethnic group was calculated., Results: Of 76,965 deliveries, 864 (1.1%) had any SMM diagnosis or procedure. All racial and ethnic minorities, except white and Asian, were disproportionally affected by preeclampsia with severe features (SF) and SMM. Overall, and within each racial/ethnic group, the SMM rate was higher among pregnancies with any HTN disorder compared to no HTN disorder (2.8 vs. 0.9%, OR 3.1, 95% CI 2.7-3.6). Race and ethnicity significantly modified the association. Overall and within each racial/ethnic group, there was a dose-response relationship between the type of HTN disorder and SMM, with more severe HTN disorders leading to a greater risk of SMM. The population-attributable fraction of HTN disorders on SMM was 20.6% for Black individuals versus 17.5% overall. The findings were similar when reclassifying transfusion-only SMM as no SMM., Conclusions: In Washington, HTN disorders are associated with SMM in a dose-dependent fashion with the greatest impact among Black individuals., (© 2024. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.)
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- 2024
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28. Breastfeeding Among People With Human Immunodeficiency Virus in North America: A Multisite Study.
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Levison J, McKinney J, Duque A, Hawkins J, Bowden EVH, Dorland J, Bitnun A, Kazmi K, Campbell DM, MacGillivray J, Yudin MH, Powell A, Datta S, Abuogi L, Weinberg A, Rakhmanina N, Mareuil JW, Hitti J, Boucoiran I, Kakkar F, Rahangdale L, Seidman D, and Widener R
- Subjects
- Female, Humans, Infant, Infectious Disease Transmission, Vertical prevention & control, Milk, Human, North America epidemiology, Retrospective Studies, Infant, Newborn, Breast Feeding, HIV Infections epidemiology, HIV Infections prevention & control, HIV Infections drug therapy
- Abstract
Background: In North American countries, national guidelines have strongly recommended formula over breastmilk for people with human immunodeficiency virus (HIV) because of concern for HIV transmission. However, data from resource-limited settings suggest the risk is <1% among virally suppressed people. Information regarding breastfeeding experience in high-resource settings is lacking., Methods: A retrospective multisite study was performed for individuals with HIV who breastfed during 2014-2022 in the United States (8 sites) and Canada (3 sites). Descriptive statistics were used for data analysis., Results: Among the 72 cases reported, most had been diagnosed with HIV and were on antiretroviral therapy prior to the index pregnancy and had undetectable viral loads at delivery. Most commonly reported reasons for choosing to breastfeed were health benefits, community expectations, and parent-child bonding. Median duration of breastfeeding was 24 weeks (range, 1 day to 72 weeks). Regimens for infant prophylaxis and protocols for testing of infants and birthing parents varied widely among institutions. No neonatal transmissions occurred among the 94% of infants for whom results were available ≥6 weeks after weaning., Conclusions: This study describes the largest cohort to date of people with HIV who breastfed in North America. Findings demonstrate high variability among institutions in policies, infant prophylaxis, and infant and parental testing practices. The study describes challenges in weighing the potential risks of transmission with personal and community factors. Finally, this study highlights the relatively small numbers of patients with HIV who chose to breastfeed at any 1 location, and the need for further multisite studies to identify best care practices., Competing Interests: Potential conflicts of interest. A. W. reports research funding from NIH and GlaxoSmithKline; consulting fees for advisory board roles with GlaxoSmithKline, Seqirus, and Merck; and payment or honoraria from GlaxoSmithKline (for a podcast) and Merck (meeting presentation). I. B. reports grants or contracts with the Canadian Institutes for Health Research, NIH, Altona, Moderna, and Ferring; consulting fees from Pfizer; and a role with the Society of Obstetricians and Gynecologists of Canada. J. D. reports travel support from the American College of Obstetricians and Gynecologists for the national conference. A. P. reports support from NIAID (grant number K23AI155296) and royalties from UpToDate. K. K. reports meeting honoraria from Takeda Canada. L. A. reports grants or contracts from NIH and the Colorado Department of Public Health and Environment. L. R. reports consulting fees from the University of California, San Francisco Clinicians Consultation Center National Perinatal HIV Hotline. F. K. reports salary support from FRQS and research infrastructure support from the Quebec government (Ministère de la Santé et des Services Sociaux/Service de lutte contre infections transmissibles sexuellement et par le sang). All other authors report no potential conflicts. All authors have submitted the ICMJE Form for Disclosure of Potential Conflicts of Interest. Conflicts that the editors consider relevant to the content of the manuscript have been disclosed., (© The Author(s) 2023. Published by Oxford University Press on behalf of Infectious Diseases Society of America. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.)
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- 2023
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29. Risk Factors Associated with Congenital Syphilis, Georgia, 2008-2015.
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Kachikis A, Schiff MA, Moore K, Chapple-McGruder T, Arluck J, and Hitti J
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- Pregnancy, Infant, Female, Humans, United States, Adult, Georgia epidemiology, Risk Factors, Syphilis, Congenital epidemiology, Syphilis epidemiology, Syphilis drug therapy, Pregnancy Complications, Infectious diagnosis
- Abstract
Background: Congenital syphilis (CS) is associated with significant perinatal morbidity and mortality. The study objectives were to compare risk factors among women with syphilis infection whose pregnancies did and did not result in CS cases and to evaluate other geographic and socioeconomic characteristics of county of residence as a measure of healthcare inequity., Methods: This study linked maternal and congenital syphilis data from the Georgia Department of Public Health (DPH), 2008-2015. The Strengthening the Reporting of Observational Studies in Epidemiology (STROBE) reporting guideline was followed. Demographic, behavioral, and case characteristics were compared among women with syphilis infection who did and did not have an infant with CS. Chi-square, Fisher's exact, and multivariate regression analyses were performed using STATA 14.2 (College Station, TX)., Results: Of 505 women with syphilis infection, 23% had an infant with CS, while 77% did not. After adjusting for race/ethnicity, factors associated with CS outcome were age greater than 35 years (adjusted odds ratio (aOR) 3.88; 95% confidence interval (CI) 1.01-14.89), hospital/emergency department diagnosis of syphilis (aOR 3.43; 95% CI 1.54-7.62), and high-risk behaviors such as exchanging sex for money or drugs (aOR 3.25; 95% CI 1.18-8.98). There were no associations between characteristics of county of residence and CS outcome., Conclusions: This study highlights risk factors that may be associated with CS incidence and the adverse pregnancy outcomes associated with CS. Further work is needed to study improved data collection systems, contributing factors related to CS as well as prevention measures in the United States., Competing Interests: None of our authors has any conflict of interest related to this publication. Outside of this work, Dr. Kachikis reported being a coinvestigator on studies funded by Pfizer and Merck outside the submitted work. Dr. Kachikis reported serving as an unpaid research consultant for Pfizer and GlaxoSmithKline on maternal immunization-related projects outside the submitted work., (Copyright © 2023 Alisa Kachikis et al.)
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- 2023
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30. Antiretroviral Regimen and Pregnancy Outcomes of Women Living with HIV in a US Cohort.
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Kopp CM, Sobhani NC, Baker B, Tapia K, Jain R, Hitti J, and Roxby AC
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Women who are pregnant and living with HIV have traditionally been excluded from clinical trials regarding new pharmacotherapy. Immediate initiation of antiretroviral therapy (ART) is recommended for women who are pregnant and living with HIV. Integrase inhibitors (INSTIs) are first-line recommended agents as they lead to more rapid HIV viral load reduction. We conducted a retrospective study of women who are pregnant and living with HIV who received prenatal care at the University of Washington. Mothers were categorized by ART class: INSTI, protease inhibitors (PI), and non-nucleoside reverse transcriptase inhibitors (NNRTI). Chi-square and t-tests were used for the analysis of baseline characteristics, and generalized estimating equations were used to adjust for HIV viral suppression between groups. There were a total of 234 mother-infant pairs whose pregnancies progressed beyond 20 weeks. The study demonstrated that women on INSTI regimens were more likely to have a shorter time to viral load suppression than women on NNRTI regimens. Additionally, seven congenital anomalies were identified in this cohort, none of which were neural tube defects. There was no perinatal transmission of HIV to any of the infants. This small cohort of women provides high-quality data regarding the safety and efficacy of INSTI use for both mothers and infants in resource-rich settings., Competing Interests: The authors have no conflicts of interest to declare. All co-authors have seen and agree with the contents of the manuscript and there is no financial interest to report. We certify that the submission is original work and is not under review at any other publication.
- Published
- 2023
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31. Cabergoline for postpartum lactation suppression: Effect on blood pressure and pulse.
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Humphrey S, Baechler M, Schiff M, and Hitti J
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- Female, Humans, Cabergoline pharmacology, Blood Pressure, Retrospective Studies, Postpartum Period, Lactation
- Abstract
Objective: To evaluate the effect of cabergoline on maternal blood pressure and pulse immediately postpartum., Methods: We conducted a retrospective cohort study of 224 post-partum women who delivered at the University of Washington and did not breastfeed. Women who received 1 mg cabergoline within 48 h post-partum were compared to unexposed non-breastfeeding women. Systolic and diastolic blood pressure and pulse were assessed at 4-h intervals up to 24 h after cabergoline administration, and compared to unexposed women using delivery as the reference time point. Mean systolic and diastolic blood pressure and pulse were compared using linear regression and 95% confidence intervals, adjusting for age, indication for lactation suppression and weeks' gestation at delivery., Results: Cabergoline-exposed women had lower mean systolic blood pressure at all time intervals. The maximum systolic blood pressure decrease with cabergoline was -10.88 mmHg (95% confidence interval -18.15 to -3.61) at >20-24 h. Mean diastolic blood pressure among cabergoline-exposed women decreased by -8.15 mmHg (95% confidence interval -13.94 to -2.36) at >20-24 h only. We found no significant difference in maternal pulse. Cabergoline was well tolerated with no adverse effects observed., Conclusion: Cabergoline has minimal clinically-relevant hemodynamic effects and was well tolerated among normotensive postpartum women., (© 2022 International Federation of Gynecology and Obstetrics.)
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- 2022
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32. Severe Maternal Morbidity Associated with Hospital NICU Level in Washington State.
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Sienas L, Albright CM, Walker S, and Hitti J
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- Blood Transfusion, Female, Humans, Patient Admission, Retrospective Studies, Washington epidemiology, Intensive Care Units, Neonatal, Morbidity, Mothers statistics & numerical data, Patient Acuity, Tertiary Care Centers statistics & numerical data
- Abstract
Objective: Rising maternal mortality and severe maternal morbidity (SMM) rates have drawn increasing public health attention. We evaluated patterns of SMM across the Washington State Perinatal Regional Network, in which neonatal intensive care unit (NICU) levels correlate with maternal level of care., Study Design: Retrospective cohort study using de-identified patient and hospital-level rates of SMM diagnoses and procedures for all women who delivered at 58 hospitals from October 2015 to September 2016. Data were obtained from the Washington State Comprehensive Hospital Abstract Reporting System, which includes inpatient diagnosis with associated Present on Admission flags, procedure, and discharge information derived from hospital billing systems. Deliveries were stratified by having or not having SMM. For each SMM diagnosis, POA rates were tabulated. Hospital SMM rates (all SMM, transfusion only, and SMM excluding transfusion) were grouped according to their NICU level of care (critical access [CA] and 1-4). Odds ratios and 95% confidence intervals (CI) were calculated., Results: Of 76,961 deliveries, 908 women (1.2%) had any SMM including 533 with transfusion only and 375 with all other SMM diagnoses/procedures. Rates of SMM were highest at level 1 and level 4 hospitals at 1.3 and 1.5%, respectively. Level 1 and CA hospitals had the highest transfusion rate (1.0%), while level 2, 3, and 4 hospitals had progressively lower rates (0.8, 0.7, and 0.5%, respectively; p < 0.01). Level 4 hospitals had the highest rate of SMM diagnoses/procedures (1.0%). Among SMM diagnoses, the percentage with POA was lowest in level 1/CA hospitals (23%) and similar across level 2, 3, and 4 hospitals (39%)., Conclusion: SMM diagnoses occur most frequently at the centers providing the highest level of care, likely attributable to the regional referral system. However, transfusion rates are increased in level 1/CA hospitals. Efforts to decrease SMM should focus on equipping level 1/CA hospitals with tools to decrease maternal morbidity and improve referral systems., Key Points: · SMM occurs most frequently at highest level of care.. · Higher transfusion rates occur at lower care level hospitals.. · Most SMM POA occurs at higher level of care.., Competing Interests: None declared., (Thieme. All rights reserved.)
- Published
- 2021
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33. Low Prevalence of Severe Acute Respiratory Syndrome Coronavirus 2 Among Pregnant and Postpartum Patients With Universal Screening in Seattle, Washington.
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LaCourse SM, Kachikis A, Blain M, Simmons LE, Mays JA, Pattison AD, Salerno CC, McCartney SA, Kretzer NM, Resnick R, Shay RL, Savitsky LM, Curtin AC, Huebner EM, Ma KK, Delaney S, Delgado C, Schippers A, Munson J, Pottinger PS, Cohen S, Neme S, Bourassa L, Bryan A, Greninger A, Jerome KR, Roxby AC, Lokken E, Cheng E, Adams Waldorf KM, and Hitti J
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- COVID-19 Testing, Female, Humans, Postpartum Period, Pregnancy, Prevalence, SARS-CoV-2, Washington epidemiology, COVID-19, Pregnancy Complications, Infectious diagnosis, Pregnancy Complications, Infectious epidemiology
- Abstract
We found low prevalence of SARS-CoV-2 (2.7% [5/188]) among pregnant and postpartum patients with universal testing. Prevalence among symptomatic patients was similar under initial targeted screening (22.2% [4/18]) and universal approaches (19.1% [8/42]). Among 170 asymptomatic patients, 2 were positive or inconclusive, respectively; repeat testing at 24 hours was negative., (© The Author(s) 2020. Published by Oxford University Press for the Infectious Diseases Society of America. All rights reserved. For permissions, e-mail: journals.permissions@oup.com.)
- Published
- 2021
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34. Phylogenetic Analyses Comparing HIV Sequences from Plasma at Virologic Failure to Cervix Versus Blood Sequences from Antecedent Antiretroviral Therapy Suppression.
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Bull ME, McKernan JL, Styrchak S, Kraft K, Hitti J, Cohn SE, Tapia K, Deng W, Holte S, Mullins JI, Coombs RW, and Frenkel LM
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- Adult, Anti-HIV Agents therapeutic use, Biopsy, Cervix Uteri drug effects, Cervix Uteri pathology, Cohort Studies, DNA, Viral blood, Disease Reservoirs virology, Drug Resistance, Viral genetics, Female, HIV Infections blood, HIV Infections drug therapy, Humans, Middle Aged, Mutation, RNA, Viral blood, Sequence Analysis, DNA, Sustained Virologic Response, Treatment Failure, Cervix Uteri virology, HIV Infections virology, HIV-1 drug effects, HIV-1 genetics, Leukocytes, Mononuclear virology, Phylogeny
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Identifying tissue sources of HIV that rebound following "failure" of antiretroviral therapy (ART) is critical to evaluating cure strategies. To assess the role of the uterine cervix and peripheral blood mononuclear cells (PBMC) as viral reservoirs, nearest-neighbor phylogenetic analyses compared genetic relatedness of tissue sequences during ART suppression to those detected in plasma at viral rebound. Blood and genital tract specimens from a natural history cohort of HIV-infected women were collected over 5 years. HIV DNA sequences extracted from PBMC and cervical biopsies during ART suppression and plasma RNA from rebound (defined as HIV RNA >3 log
10 copies/mL) were derived by single-genome amplification. Phylogenetic and nearest-neighbor analyses of HIV env sequences and drug resistance in pol sequences were compared between tissues. Nine instances of plasma viral rebound (median HIV RNA 3.6 log10 c/mL; IQR: 3.1-3.8) were detected in 7 of 57 women. Nearest-neighbor analyses found rebound plasma sequences were closer to uterine cervical sequences in 4/9 (44%), closer to PBMC in 3/9 (33%), and ambiguous in 2/9 (22%) cases. Rebound plasma clades ( n = 27) shared identical sequences in seven instances with the cervix versus two with PBMC. Novel drug resistance mutations were detected in 4/9 (44%) rebounds. The observed tendency for greater sharing of identical HIV variants and greater nearest-neighbor association between rebounding plasma and uterine cervical versus PBMC sequences suggests that the uterine cervix may be a relevant HIV reservoir. The cervix, a readily accessible tissue in women that can be repeatedly sampled, could help assess the HIV reservoir when evaluating cure strategies.- Published
- 2019
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35. Contribution of hypertension to severe maternal morbidity.
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Hitti J, Sienas L, Walker S, Benedetti TJ, and Easterling T
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- Adult, Cross-Sectional Studies, Female, Humans, Hypertension mortality, Maternal Mortality, Northwestern United States epidemiology, Pre-Eclampsia epidemiology, Pre-Eclampsia mortality, Pregnancy, Pregnancy Complications, Cardiovascular mortality, Premature Birth epidemiology, Premature Birth mortality, Retrospective Studies, Hypertension epidemiology, Pregnancy Complications, Cardiovascular epidemiology
- Abstract
Background: Maternal mortality and severe maternal morbidity are growing public health concerns in the United States. The Centers for Disease Control and Prevention Severe Maternal Morbidity measure provides insight into processes underlying maternal mortality and may highlight modifiable risk factors for adverse maternal health outcomes., Objective: The primary objective of this study was to evaluate the association between hypertensive disorders and severe maternal morbidity at a regional perinatal referral center. We hypothesized that women with preeclampsia with severe features would have a higher rate of severe maternal morbidity compared to normotensive women. We also assessed the proportion of severe maternal morbidity diagnoses that were present on admission, in contrast to those arising during the delivery hospitalization., Study Design: In this retrospective cross-sectional analysis, we assessed rates of severe maternal morbidity diagnoses (eg, renal insufficiency, shock, and sepsis) and procedures (eg, transfusion and hysterectomy) for all 7025 women who delivered at the University of Washington Medical Center from Oct. 1, 2013, through May 31, 2017. Severe maternal morbidity was determined from prespecified International Classification of Diseases diagnosis and procedure codes; all diagnoses were confirmed by chart review. Present-on-admission rates were calculated for each diagnosis through hospital administrative data provided by the Vizient University Health System Consortium. Maternal demographic and clinical characteristics were compared for women with and without severe maternal morbidity. The χ
2 and Fisher exact tests were used to determine statistical significance. Odds ratios and 95% confidence intervals were calculated for the associations between maternal demographic and clinical characteristics and severe maternal morbidity., Results: Of 7025 deliveries, 284 (4%) had severe maternal morbidity; 154 had transfusion only, 27 had other procedures, and 103 women had 149 severe maternal morbidity diagnoses (26 women had multiple diagnoses). Severe preeclampsia occurred in 438 deliveries (6.2%). Notably, hypertension was associated with severe maternal morbidity in a dose-dependent fashion, with the strongest association observed for preeclampsia with severe features (odds ratio, 5.4; 95% confidence interval, 3.9-7.3). Severe maternal morbidity was also significantly associated with preeclampsia without severe features, chronic hypertension, preterm delivery, pregestational diabetes, and multiple gestation. Among women with severe maternal morbidity, over one third of preterm births were associated with maternal hypertension. American Indian/Alaskan Native women had significantly higher severe maternal morbidity rates compared to other racial/ethnic groups (11.7% vs 3.9% for Whites, P < .01). Overall, 39.6% of severe maternal morbidity diagnoses were present on admission., Conclusion: Hypertensive disorders in pregnancy are strongly associated with severe maternal morbidity in a dose-dependent relationship, suggesting that strategies to address rising maternal morbidity rates should include early recognition and management of hypertension. Prevention strategies focused on hypertension might also impact medically indicated preterm deliveries. The finding of increased severe maternal morbidity among American Indian/Alaskan Native women, a disadvantaged population in Washington State, underscores the role that socioeconomic factors may play in adverse maternal health outcomes. As 39% of severe maternal morbidity diagnoses were present on admission, this measure should be risk-adjusted if used as a quality metric for comparison between hospitals., (Copyright © 2018. Published by Elsevier Inc.)- Published
- 2018
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36. A Comparison of the Nulliparous-Term-Singleton-Vertex and Society of Maternal-Fetal Medicine Cesarean Birth Metrics Based on Hospital Size.
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Shields LE, Walker S, Hedriana HL, Wiesner S, Pelletreau B, Hitti J, and Benedetti TJ
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- Female, Humans, Longitudinal Studies, Parity, Pregnancy, Pregnancy, High-Risk, Prenatal Care organization & administration, Regression Analysis, United States, Cesarean Section statistics & numerical data, Hospital Bed Capacity statistics & numerical data, Quality Improvement organization & administration, Quality Indicators, Health Care
- Abstract
Objective: The purpose of this study was to compare the nulliparous-term-singleton-vertex (NTSV) and the Society of Maternal-Fetal Medicine (SMFM) cesarean birth metrics as tools for quality improvement efforts based on hospital size., Materials and Methods: Cesarean birth rates from 275 hospitals from six states were used to evaluate the NTSV metric and 81 hospitals from four states for the SMFM metric. Data were assessed based on delivery volume, their use as an effective tool for ongoing quality improvement programs, and their ability to serve as performance-based payline indicators., Results: The average NTSV and SMFM cesarean birth rates were 25.6 and 13.0%, respectively. The number of deliveries included in the NTSV metric was stable across all hospital sizes (33.1-36.2%). With the SMFM metric, there was a progressive decline in the number of deliveries included, 90.0 versus 69.6%, in relatively small to large facilities. Variability was less and precision increased with the SMFM metric, which reduced the number of hospitals that could be incorrectly categorized when using performance-based predefined cesarean birth rate paylines., Conclusion: The SMFM metric appears to be better suited as a tool for rapid process improvement programs aimed at reducing cesarean birth rates in low-risk patients., Competing Interests: Disclosure The authors report no conflicts of interest in this work., (Thieme Medical Publishers 333 Seventh Avenue, New York, NY 10001, USA.)
- Published
- 2018
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37. Effect of severity of illness on cesarean delivery rates in Washington State.
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Hitti J, Walker S, and Benedetti TJ
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- Cross-Sectional Studies, Female, Humans, Hypertension epidemiology, Hypertension, Pregnancy-Induced epidemiology, Linear Models, Lupus Erythematosus, Systemic epidemiology, Patient Acuity, Patient Admission, Pregnancy, Renal Insufficiency, Chronic epidemiology, Venous Thromboembolism epidemiology, Washington epidemiology, Cesarean Section statistics & numerical data, Pregnancy Complications epidemiology, Severity of Illness Index
- Abstract
Background: Hospitals and providers are increasingly held accountable for their cesarean delivery rates. In the perinatal quality improvement arena, there is vigorous debate about whether all hospitals can be held to the same benchmark for an acceptable cesarean rate regardless of patient acuity. However, the causes of variation in hospital cesarean delivery rates are not well understood., Objective: We sought to evaluate the association and temporal trends between severity of illness at admission and the primary term singleton vertex cesarean delivery rate among hospitals in Washington State. We hypothesized that hospitals with higher patient acuity would have higher cesarean delivery rates and that this pattern would persist over time., Study Design: In this cross-sectional analysis, we analyzed aggregate hospital-level data for all nonmilitary hospitals in Washington State with ≥100 deliveries/y during federal fiscal years 2010 through 2014 (287,031 deliveries). Data were obtained from the Washington State Comprehensive Hospital Abstract Reporting System, which includes inpatient demographic, diagnosis, procedure, and discharge information derived from hospital billing systems. Age, admission diagnoses and procedure codes were converted to patient-level admission severity-of-illness scores using the All Patient Refined Diagnosis Related Groups classification system. This system is widely used throughout the United States to adjust hospital data for severity of illness. Mean admission hospital-level severity-of-illness scores were calculated for each fiscal year among the term singleton vertex population with no history of cesarean delivery. We used linear regression to evaluate the association between hospital admission severity of illness and the primary term singleton vertex cesarean delivery rate, calculated Pearson correlation coefficients, and compared regression line slopes and 95% confidence intervals for each fiscal year., Results: Hospitals were diverse with respect to delivery volume, level of care, and geographic location within Washington. Hospital aggregate admission severity-of-illness score correlated with primary term singleton vertex cesarean delivery rate in all fiscal years (R
2 0.38-0.58, P < .001). For every year in the study interval, as admission severity of illness increased so did the primary term singleton vertex cesarean rate. The slope of the regression line decreased during the study interval, suggesting that statewide decrease in primary term singleton vertex cesarean rate occurred across the range of severity of illness., Conclusion: Admission severity-of-illness score is strongly associated with the primary term singleton vertex cesarean delivery rate among hospitals in Washington State. Approximately 50% of variation in hospital primary term singleton vertex cesarean delivery rates appeared to be related to admission severity of illness. This relationship persisted over time despite a statewide decrease in cesarean delivery, suggesting that patient acuity will likely continue to contribute to hospital variation in cesarean delivery rates despite perinatal quality improvement efforts. The major implication of this study is that patient acuity should be considered when determining optimal cesarean delivery rates. High-acuity hospitals are likely to have high cesarean rates because they provide a specific role in serving regional needs. To hold these centers to an arbitrary benchmark may jeopardize the funding necessary to support regional safety net institutions., (Copyright © 2017. Published by Elsevier Inc.)- Published
- 2017
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38. Please exit safely: maternal and twin pair neonatal outcomes according to delivery mode when twin A is vertex .
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Hartley RS and Hitti J
- Subjects
- Adult, Apgar Score, Cesarean Section, Female, Humans, Infant, Newborn, Outcome Assessment, Health Care, Pregnancy, Retrospective Studies, Trial of Labor, Twins, Delivery, Obstetric methods, Labor Presentation, Obstetric Labor Complications etiology, Pregnancy, Twin
- Abstract
Objective: To investigate maternal and infant outcomes associated with delivery mode for twins with a cephalic presenting twin., Methods: Linked birth certificate and ICD hospital discharge data were analyzed retrospectively for 5573 mothers and their respective twin pairs born live at 34-42 weeks' gestation, with twin A vertex, in Washington State from 1997-2007. Relative risks (RR) and 95% confidence intervals of adverse maternal and twin pair outcomes were calculated for vaginal delivery or cesarean during labor in comparison to cesarean without labor., Results: Vaginal delivery or cesarean during labor was associated with significantly elevated rates of maternal hemorrhage (RR = 2.8 [2.2,3.7]), infection (RR = 2.2 [1.5,3.3]), twin pair birth injury (RR = 2.6 [1.2,5.4]) and low 5-min Apgar scores (RR = 1.4 [1.1,1.8]) and with significantly lower rates of ventilation among preterm twin pairs only (RR = 0.8 [0.7,0.9]). The lowest rate of combined poor short-term outcomes occurred in mothers and twin pairs delivered by cesarean without labor (23%) and the highest rates occurred in those with operative vaginal or cesarean during labor (39% and 34%, respectively). Among women in labor, 35% of nulliparas achieved spontaneous vaginal delivery of both twins compared to 63% of non-nulliparas., Conclusion: For nulliparous women who carry twins to term, planned cesarean may improve outcomes.
- Published
- 2017
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39. Effects of Lipopolysaccharide and Progesterone Exposures on Embryonic Cerebral Cortex Development in Mice.
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Tronnes AA, Koschnitzky J, Daza R, Hitti J, Ramirez JM, and Hevner R
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- Animals, Cell Proliferation drug effects, Encephalitis chemically induced, Female, Lipopolysaccharides, Mice, Mice, Inbred C57BL, Microglia drug effects, Microglia physiology, Cerebral Cortex drug effects, Cerebral Cortex embryology, Encephalitis embryology, Neurogenesis drug effects, Progesterone administration & dosage
- Abstract
Our objective was to determine if progesterone pretreatment could ameliorate the detrimental effects of lipopolysaccharide (LPS)-induced inflammation on cortical neurogenesis. Timed pregnant mouse dams (n = 8) were given intraperitoneal injections of progesterone (42 mg/kg) or vehicle on embryonic day 17.5. Two hours later, mice were given intraperitoneal LPS (140 μg/kg) or vehicle. Mice were sacrificed 16 hours later on embryonic day 18. Two-color immunofluorescence was performed with primary antibodies T-box transcription factor 2 (Tbr2), ionized calcium binding adapter molecule 1 (Iba1), cleaved caspase 3 (CC3), and 5-bromo-2'-deoxyuridine (BrdU). Cells were counted, and statistical analysis was determined using analysis of variance and Tukey-Kramer method. The Tbr2 intermediate neural progenitor cell density decreased after LPS exposure (P = .0022). Pre-exposure to progesterone statistically increased Tbr2 intermediate neural progenitors compared to LPS treatment alone and was similar to controls (P = .0022). After LPS exposure, microglia displayed an activated phenotype, and cell density was increased (P < .001). Cell death rates were low among study groups but was increased in LPS exposure groups compared to progesterone alone (P = .0015). Lipopolysaccharide-induced systemic inflammation reduces prenatal neurogenesis in mice. Pre-exposure with progesterone is associated with increased neurogenesis. Progesterone may protect the preterm brain from defects of neurogenesis induced by inflammation., (© The Author(s) 2015.)
- Published
- 2016
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40. Hydrogen Peroxide-Producing Lactobacilli Are Associated With Lower Levels of Vaginal Interleukin-1β, Independent of Bacterial Vaginosis.
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Mitchell C, Fredricks D, Agnew K, and Hitti J
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- Adult, Carrier State epidemiology, Female, Humans, Pregnancy, Pregnancy Complications, Infectious epidemiology, Pregnancy Complications, Infectious immunology, Prospective Studies, United States epidemiology, Vagina immunology, Vaginal Smears, Vaginosis, Bacterial epidemiology, Vaginosis, Bacterial immunology, Carrier State microbiology, Hydrogen Peroxide metabolism, Lactobacillus isolation & purification, Pregnancy Complications, Infectious microbiology, Vagina microbiology, Vaginosis, Bacterial microbiology
- Abstract
Background: The presence of hydrogen peroxide (H2O2)-producing lactobacilli in the vagina is associated with decreased rates of preterm birth and HIV acquisition. We hypothesize that this is due to immunomodulatory effects of these species., Methods: Concentrations of interleukin (IL)-1β, IL-6, IL-8, secretory leukocyte protease inhibitor, and human β-defensin 2 were quantified from vaginal swabs from 4 groups of women: women with and without bacterial vaginosis (BV) by Nugent score, further stratified by detection of H2O2-producing lactobacilli by semiquantitative culture. Ten quantitative polymerase chain reaction assays characterized the presence and quantity of select Lactobacillus and BV-associated species in each group. Levels of immune markers and bacteria were compared between the 4 groups using analysis of variance, Kruskal-Wallis, Mann-Whitney U, or χ tests., Results: Swabs from 110 women from 4 groups were included: 26 had a normal Nugent score (BV-), and no H2O2-producing lactobacilli detected (H2O2-); 47 were BV-, H2O2+; 27 BV+, H2O2-; and 10 BV+, H2O2+. The groups were similar in age, marital status, and reproductive history, but not ethnicity: the BV-, H2O2- group had more white participants (P = 0.02). In women with and without BV, IL-1β was lower in the H2O2+ groups. Human β-defensin 2 was lowest in BV+ H2O2- women and highest in BV-, H2O2-. Secretory leukocyte protease inhibitor was lower in women with BV and did not differ by the presence of H2O2-producing lactobacilli. In regression analysis, higher quantities of Lactobacillus crispatus were associated with lower quantities of IL-1β. Detection and quantity of BV-associated species by quantitative polymerase chain reaction was significantly different between women with and without BV, but not between women with and without H2O2-producing lactobacilli within those groups., Conclusions: The presence of H2O2-producing lactobacilli is associated with lower levels of some vaginal proinflammatory cytokines, even in women with BV.
- Published
- 2015
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41. Frequency of Antiretroviral Resistance Mutations among Infants Exposed to Single-Dose Nevirapine and Short Course Maternal Antiretroviral Regimens: ACTG A5207.
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Hitti J, Halvas EK, Zheng L, Panousis CG, Kabanda J, Taulo F, Kumarasamy N, Pape JW, Lalloo U, Sprenger H, Klingman KL, Chan ES, McMahon D, and Mellors JW
- Abstract
Background: Intrapartum single-dose nevirapine (sdNVP) reduces HIV-1 perinatal transmission but selects NVP resistance among mothers and infants. We evaluated the frequency of antiretroviral resistance among infants with intrauterine HIV-1 infection exposed to sdNVP and maternal antenatal or breastfeeding antiretroviral therapy., Methods: This analysis included 429 infants from sub-Saharan Africa, India and Haiti whose 422 mothers received sdNVP plus maternal study treatment. At entry mothers had CD4>250/μL and were ART-naïve except for antenatal ZDV per local standard of care. Maternal study treatment started intrapartum and included ZDV/3TC, TDF/FTC or LPV/r for 7 or 21 days in a randomized factorial design. Infants received sdNVP study treatment and ZDV if local standard of care. Infant HIV RNA or DNA PCR and samples for genotype were obtained at birth and weeks 2, 4 and 12; infants who ever breast-fed were also tested at weeks 16, 24, 48 and 96. Samples from HIV-1-infected infants were tested for drug resistance by population genotype (ViroSeq). NVP or NRTI resistance mutations were assessed using the IAS-USA mutation list., Results: Perinatal HIV-1 transmission occurred in 17 (4.0%) infants including 12 intrauterine infections. Resistance mutations were detected among 5 (42%) intrauterine-infected infants; of these, 3 had mutations conferring resistance to NVP alone, 1 had resistance to NRTI alone, and 1 had dual-class resistance mutations. Among the 2 infants with NRTI mutations, one (K70R) was likely maternally transmitted and one (K65R) occurred in the context of breastfeeding exposure to maternal antiretroviral therapy., Conclusions: Infants with intrauterine HIV infection are at risk of acquiring resistance mutations from exposure to maternal antiretroviral medications intrapartum and/or during breastfeeding. New approaches are needed to lower the risk of antiretroviral resistance in these infants.
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- 2014
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42. Clinical and genetic determinants of plasma nevirapine exposure following an intrapartum dose to prevent mother-to-child HIV transmission.
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Vardhanabhuti S, Acosta EP, Ribaudo HJ, Severe P, Lalloo U, Kumarasamy N, Taulo F, Kabanda J, Oneko O, Ive P, Sambarey P, Chan ES, Hitti J, Hong F, McMahon D, and Haas DW
- Subjects
- Adult, Chemoprevention methods, Cytochrome P-450 CYP2B6, Female, Humans, Infant, Newborn, Inhibitory Concentration 50, Male, Metabolic Clearance Rate, Nevirapine pharmacokinetics, Plasma chemistry, Polymorphism, Genetic, Pregnancy, Time Factors, Young Adult, Anti-HIV Agents administration & dosage, Anti-HIV Agents pharmacokinetics, Aryl Hydrocarbon Hydroxylases genetics, HIV Infections prevention & control, Infectious Disease Transmission, Vertical prevention & control, Nevirapine administration & dosage, Oxidoreductases, N-Demethylating genetics
- Abstract
Objective: Nevirapine is metabolized by cytochrome P450 (CYP) 2B6 and CYP3A4. We characterized relationships between clinical parameters, human genetics, pharmacokinetics, and human immunodeficiency virus type 1 (HIV-1) drug resistance mutations in pregnant women following single-dose intrapartum nevirapine., Methods: In AIDS Clinical Trials Group study A5207, women received nevirapine at onset of labor and were randomly assigned to receive lamivudine/zidovudine, emtricitabine/tenofovir, or lopinavir/ritonavir for 7 or 21 days. Plasma nevirapine level was quantified on postpartum day 1 and on weeks 1, 3, and 5. We assayed 214 polymorphisms in CYP2B6 and other genes and evaluated associations with pharmacokinetic parameters, including elimination constant, time to protein-adjusted 50% inhibitory concentration (IC50), and week 5 nevirapine level below the quantification limit., Results: Among 301 women with evaluable pharmacokinetic and genotype data, lower body mass index and random assignment to receive lopinavir/ritonavir were associated with more rapid nevirapine elimination. Among those of African ancestry, longer time to IC50 was associated with CYP2B6 983T → C (P = .004) but not with CYP2B6 516G → T (P = .8). Among Indians, slower nevirapine elimination was associated with CYP2B6 516G → T (P = .04). Emergent resistance was infrequent and not associated with pharmacokinetics or CYP2B6 genotype., Conclusions: The effects on plasma drug exposure following single-dose nevirapine may be greater for CYP2B6 983T → C than for 516G → T and are less pronounced than at steady state.
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- 2013
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43. A hemolytic pigment of Group B Streptococcus allows bacterial penetration of human placenta.
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Whidbey C, Harrell MI, Burnside K, Ngo L, Becraft AK, Iyer LM, Aravind L, Hitti J, Adams Waldorf KM, and Rajagopal L
- Subjects
- Amniotic Fluid metabolism, Amniotic Fluid microbiology, Endopeptidase K metabolism, Epithelial Cells metabolism, Epithelial Cells microbiology, Female, Fetus metabolism, Fetus microbiology, Glycolipids metabolism, Humans, NF-kappa B metabolism, Obstetric Labor, Premature metabolism, Obstetric Labor, Premature microbiology, Ornithine metabolism, Placenta metabolism, Pregnancy, Pregnancy Complications, Infectious metabolism, Streptococcal Infections metabolism, Hemolysin Proteins metabolism, Pigments, Biological metabolism, Placenta microbiology, Pregnancy Complications, Infectious microbiology, Streptococcal Infections microbiology, Streptococcus agalactiae metabolism
- Abstract
Microbial infection of the amniotic fluid is a significant cause of fetal injury, preterm birth, and newborn infections. Group B Streptococcus (GBS) is an important human bacterial pathogen associated with preterm birth, fetal injury, and neonatal mortality. Although GBS has been isolated from amniotic fluid of women in preterm labor, mechanisms of in utero infection remain unknown. Previous studies indicated that GBS are unable to invade human amniotic epithelial cells (hAECs), which represent the last barrier to the amniotic cavity and fetus. We show that GBS invades hAECs and strains lacking the hemolysin repressor CovR/S accelerate amniotic barrier failure and penetrate chorioamniotic membranes in a hemolysin-dependent manner. Clinical GBS isolates obtained from women in preterm labor are hyperhemolytic and some are associated with covR/S mutations. We demonstrate for the first time that hemolytic and cytolytic activity of GBS is due to the ornithine rhamnolipid pigment and not due to a pore-forming protein toxin. Our studies emphasize the importance of the hemolytic GBS pigment in ascending infection and fetal injury.
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- 2013
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44. Effect of the levonorgestrel intrauterine device on genital HIV-1 RNA shedding among HIV-1-infected women not taking antiretroviral therapy in Nairobi, Kenya.
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Coleman JS, Mwachari C, Balkus J, Sanguli L, Muliro A, Agnew K, Coombs RW, Cohen CR, and Hitti J
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- Adult, Anti-Retroviral Agents therapeutic use, CD4 Lymphocyte Count, Cervix Uteri, Contraceptive Agents, Female therapeutic use, Female, HIV Infections, HIV-1 drug effects, HIV-1 genetics, Humans, Interleukin-1beta blood, Kenya, Vaginal Douching, Intrauterine Devices, Medicated, Levonorgestrel therapeutic use, RNA, Viral analysis, RNA, Viral blood
- Abstract
The effect of the levonorgestrel-releasing intrauterine device (LNG-IUD) on genital HIV-1 RNA shedding and inflammation among 25 HIV-infected women was evaluated. Blood, endocervical, and cervicovaginal lavage samples were collected from HIV-infected women not taking antiretrovirals before LNG-IUD insertion and 1 month, 3 month, and 6 months thereafter. HIV-1 RNA was quantitated by real-time reverse transcriptase-polymerase chain reaction. Inflammatory markers were measured by enzyme immunoassay. Genital HIV-1 RNA shedding and inflammatory markers did not differ between LNG-IUD placement and month 6, with the exception of interleukin 1β that increased (0.42 log10; 95% confidence interval: 0.10 to 0.75). The LNG-IUD did not increase genital HIV-1 RNA shedding after 6 months of use.
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- 2013
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45. Greater suppression of nevirapine resistance with 21- vs 7-day antiretroviral regimens after intrapartum single-dose nevirapine for prevention of mother-to-child transmission of HIV.
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McMahon DK, Zheng L, Hitti J, Chan ES, Halvas EK, Hong F, Kabanda J, Taulo F, Kumarasamy N, Bonhomme J, Wallis CL, Klingman KL, Hughes MD, and Mellors JW
- Subjects
- Adult, Female, HIV drug effects, HIV isolation & purification, HIV Infections prevention & control, HIV Infections virology, Humans, Infant, Newborn, Pregnancy, Pregnancy Complications, Infectious virology, Prospective Studies, Time Factors, Young Adult, Anti-HIV Agents administration & dosage, Antiretroviral Therapy, Highly Active methods, Drug Resistance, Viral, HIV Infections drug therapy, Infectious Disease Transmission, Vertical prevention & control, Nevirapine administration & dosage, Pregnancy Complications, Infectious drug therapy
- Abstract
Background: Nevirapine (NVP) resistance emerges in up to 70% of women exposed to single-dose (sd) NVP for prevention of mother-to-child transmission of human immunodeficiency virus (HIV)., Methods: HIV-infected pregnant women were randomized to receive sdNVP and either zidovudine/lamivudine (3TC), tenofovir/emtricitabine (FTC), or lopinavir/ritonavir for either 7 or 21 days. The primary endpoint was the emergence of new NVP resistance mutations as detected by standard population genotype at 2 and 6 weeks after treatment. Low-frequency NVP- or 3TC/FTC-resistant mutants at codons 103, 181, and 184 were sought using allele-specific polymerase chain reaction (ASP)., Results: Among 484 women randomized, 422 (87%) received study treatment. Four hundred twelve (98%) women had primary endpoint results available; of these, 5 (1.2%) had new NVP resistance detected by population genotype: 4 of 215 in the 7-day arms (1.9%; K103N in 4 women with Y181C, Y188C, or G190A in 3 of 4) and 1 of 197 (0.5%; V108I) in the 21-day arms (P = .37). Among women with ASP results, new NVP resistance mutations emerged significantly more often in the 7-day arms (13/74 [18%]) than in the 21-day arms (3/66 [5%], P = .019). 3TC/FTC-resistant mutants (M184V/I) emerged infrequently (7/134 [5%]), and their occurrence did not differ by arm., Conclusions: Three short-term antiretroviral strategies, begun simultaneously with the administration of sdNVP, resulted in a low rate (1.2%) of new NVP-resistance mutations when assessed at 2 and 6 weeks following completion of study treatment by standard genotype. ASP revealed that 21-day regimens were significantly better than 7-day regimens at preventing the emergence of minor NVP resistance variants. Clinical Trials Registration.NCT00099632.
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- 2013
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46. Associations between genital tract infections, genital tract inflammation, and cervical cytobrush HIV-1 DNA in US versus Kenyan women.
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Mitchell C, Balkus JE, McKernan-Mullin J, Cohn SE, Luque AE, Mwachari C, Cohen CR, Coombs R, Frenkel LM, and Hitti J
- Subjects
- Adult, Anti-Retroviral Agents therapeutic use, CD4 Lymphocyte Count, Cervix Uteri metabolism, Cytomegalovirus Infections complications, Female, HIV Infections complications, HIV Infections drug therapy, Herpes Genitalis complications, Humans, Interleukin-1 metabolism, Interleukin-1beta metabolism, Interleukin-8 metabolism, Kenya, Middle Aged, Prospective Studies, RNA, Viral blood, RNA, Viral isolation & purification, Reproductive Tract Infections complications, Reproductive Tract Infections microbiology, Reproductive Tract Infections virology, United States, Uterine Cervicitis complications, Uterine Cervicitis metabolism, Vagina metabolism, Vagina microbiology, Vaginitis complications, Vaginitis metabolism, Vaginitis microbiology, Viral Load, Cervix Uteri virology, DNA, Viral isolation & purification, HIV Infections virology, HIV-1 isolation & purification, Vagina virology
- Abstract
Cervical shedding of HIV-1 DNA may influence HIV-1 sexual transmission. HIV-1 DNA was detected in 250 (80%) of 316 and 207 (79%) of 259 cervical cytobrush specimens from 56 US and 80 Kenyan women, respectively. Plasma HIV-1 RNA concentration was associated with increased HIV-1 DNA shedding among US and Kenyan women. Kenyan women had higher cervicovaginal concentrations of proinflammatory interleukins (IL)-1β, IL-6, IL-8, and anti-inflammatory secretory leukocyte protease inhibitor compared with US women (all P < 0.01). HIV-1 DNA shedding was associated with increased concentrations of IL-1β and IL-6 and lower secretory leukocyte protease inhibitor among US women but not Kenyan women.
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- 2013
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47. Interaction between lactobacilli, bacterial vaginosis-associated bacteria, and HIV Type 1 RNA and DNA Genital shedding in U.S. and Kenyan women.
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Mitchell C, Balkus JE, Fredricks D, Liu C, McKernan-Mullin J, Frenkel LM, Mwachari C, Luque A, Cohn SE, Cohen CR, Coombs R, and Hitti J
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- Adolescent, Adult, Female, HIV Infections complications, HIV Infections microbiology, HIV Infections transmission, Humans, Kenya, Middle Aged, Prospective Studies, United States, Vagina microbiology, Vaginosis, Bacterial complications, Vaginosis, Bacterial microbiology, Young Adult, DNA, Viral metabolism, HIV Infections virology, HIV-1 physiology, Lactobacillus, RNA, Viral metabolism, Vagina virology, Vaginosis, Bacterial virology, Virus Shedding physiology
- Abstract
Bacterial vaginosis has been associated with genital HIV-1 shedding; however, the effect of specific vaginal bacterial species has not been assessed. We tested cervicovaginal lavage from HIV-1-seropositive women for common Lactobacillus species: L. crispatus, L. jensenii, and seven BV-associated species: BVAB1, BVAB2, BVAB3, Leptotrichia, Sneathia, Megasphaera, and Atopobium spp. using quantitative PCR. We used linear and Poisson regression to evaluate associations between vaginal bacteria and genital HIV-1 RNA and DNA. Specimens from 54 U.S. (310 visits) and 50 Kenyan women (137 visits) were evaluated. Controlling for plasma viral load, U.S. and Kenyan women had similar rates of HIV-1 RNA (19% of visits vs. 24%; IRR=0.95; 95% CI 0.61, 1.49) and DNA shedding (79% vs. 76%; IRR=0.90; 0.78, 1.05). At visits during antiretroviral therapy (ART), the likelihood of detection of HIV-1 RNA shedding was greater with BVAB3 (IRR=3.16; 95% CI 1.36, 7.32), Leptotrichia, or Sneathia (IRR=2.13; 1.02, 4.72), and less with L. jensenii (IRR=0.39; 0.18, 0.84). At visits without ART, only L. crispatus was associated with a lower likelihood of HIV-1 RNA detection (IRR=0.6; 0.40, 0.91). Vaginal Lactobacillus species were associated with lower risk of genital HIV-1 shedding, while the presence of certain BV-associated species may increase that risk.
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- 2013
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48. Detection of hydrogen peroxide-producing Lactobacillus species in the vagina: a comparison of culture and quantitative PCR among HIV-1 seropositive women.
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Balkus JE, Mitchell C, Agnew K, Liu C, Fiedler T, Cohn SE, Luque A, Coombs R, Fredricks DN, and Hitti J
- Subjects
- Adolescent, Adult, Bacteriological Techniques methods, Cohort Studies, DNA, Bacterial genetics, DNA, Ribosomal genetics, Female, HIV Infections virology, HIV-1 isolation & purification, Humans, Lactobacillus genetics, Lactobacillus growth & development, Middle Aged, Prospective Studies, RNA, Ribosomal, 16S genetics, Real-Time Polymerase Chain Reaction methods, United States, Vaginal Douching, Young Adult, HIV Infections microbiology, Hydrogen Peroxide metabolism, Lactobacillus isolation & purification, Lactobacillus metabolism, Vagina microbiology
- Abstract
Background: The presence of hydrogen peroxide (H(2)O(2)) producing Lactobacillus in the vagina may play a role in controlling genital HIV-1 shedding. Sensitive molecular methods improve our ability to characterize the vaginal microbiota; however, they cannot characterize phenotype. We assessed the concordance of H(2)O(2)-producing Lactobacillus detected by culture with quantitative PCR (qPCR) detection of Lactobacillus species commonly assumed to be H(2)O(2)-producers., Methods: Samples were collected as part of a prospective cohort study of HIV-1 seropositive US women. Cervicovaginal lavage specimens were tested for L. crispatus and L. jensenii using 16S rRNA gene qPCR assays. Vaginal swabs were cultured for Lactobacillus and tested for H(2)O(2)-production. We calculated a kappa statistic to assess concordance between culture and qPCR., Results: Culture and qPCR results were available for 376 visits from 57 women. Lactobacilli were detected by culture at 308 (82%) visits, of which 233 of 308 (76%) produced H(2)O(2). L. crispatus and/or L. jensenii were detected at 215 (57%) visits. Concordance between detection of L. crispatus and/or L. jensenii by qPCR and H(2)O(2)-producing Lactobacillus by culture was 75% (kappa = 0.45)., Conclusions: Among HIV-1 seropositive women, there was a moderate level of concordance between H(2)O(2)-producing Lactobacillus detected by culture and the presence of L. crispatus and/or L. jensenii by qPCR. However, one-quarter of samples with growth of H(2)O(2)-producing lactobacilli did not have L. crispatus or L. jensenii detected by qPCR. This discordance may be due to the presence of other H(2)O(2)-producing Lactobacillus species.
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- 2012
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49. Infant outcomes after maternal antiretroviral exposure in resource-limited settings.
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Nielsen-Saines K, Komarow L, Cu-Uvin S, Jourdain G, Klingman KL, Shapiro DE, Mofenson L, Moran L, Campbell TB, Hitti J, Fiscus S, and Currier J
- Subjects
- Cohort Studies, Developing Countries economics, Female, Follow-Up Studies, HIV Infections drug therapy, HIV Infections economics, Humans, Infant, Internationality, Pregnancy, Pregnancy Complications, Infectious drug therapy, Pregnancy Complications, Infectious economics, Prospective Studies, Treatment Outcome, Viral Load, Anti-HIV Agents therapeutic use, HIV Infections epidemiology, HIV-1, Health Resources economics, Infectious Disease Transmission, Vertical economics, Infectious Disease Transmission, Vertical prevention & control, Pregnancy Complications, Infectious epidemiology
- Abstract
Background and Objective: The impact of maternal antiretrovirals (ARVs) during pregnancy, labor, and postpartum on infant outcomes is unclear., Methods: Infants born to HIV-infected mothers in ARV studies were followed for 18 months., Results: Between June 2006 and December 2008, 236 infants enrolled from Africa (n = 36), India (n = 47), Thailand (n = 152), and Brazil (n = 1). Exposure to ARVs in pregnancy included ≥ 3 ARVs (10%), zidovudine/intrapartum ARV (81%), and intrapartum ARV (9%). There were 4 infant infections (1 in utero, 3 late postpartum) and 4 deaths with 1.8% mortality (95% confidence interval [CI], 0.1%-3.5%) and 96.4% HIV-1-free survival (95% CI, 94.0%-98.9%). Birth weight was ≥ 2.5 kg in 86%. In the first 6 months, Indian infants (nonbreastfed) had lowest median weights and lengths and smallest increases in growth. After 6 months, African infants had the lowest median weight and weight-for-age z scores. Infants exposed to highest maternal viral load had the lowest height and height-for-age z scores. Serious adverse events occurred in 38% of infants, did not differ by country, and correlated with less maternal ARV exposure. Clinical diagnoses were seen in 84% of Thai, 31% of African, and 9% of Indian infants. Congenital defects/inborn errors of metabolism were seen in 18 (7.6%) infants, of which 17 were Thai (11%: 95% CI, 6.7%-17.0%); none had first trimester ARV exposure., Conclusions: Infant follow-up in large international cohorts is feasible and provides important safety and HIV transmission data following maternal ARV exposure. Increased surveillance increases identification of congenital/inborn errors.
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- 2012
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50. Valacyclovir suppressive therapy reduces plasma and breast milk HIV-1 RNA levels during pregnancy and postpartum: a randomized trial.
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Drake AL, Roxby AC, Ongecha-Owuor F, Kiarie J, John-Stewart G, Wald A, Richardson BA, Hitti J, Overbaugh J, Emery S, and Farquhar C
- Subjects
- Acyclovir administration & dosage, Adolescent, Adult, Double-Blind Method, Female, Humans, Infectious Disease Transmission, Vertical prevention & control, Kenya, Nevirapine administration & dosage, Placebos administration & dosage, Postpartum Period, Pregnancy, Pregnancy Complications, Infectious drug therapy, RNA, Viral analysis, RNA, Viral blood, RNA, Viral isolation & purification, Treatment Outcome, Valacyclovir, Valine administration & dosage, Young Adult, Zidovudine administration & dosage, Acyclovir analogs & derivatives, Anti-HIV Agents administration & dosage, HIV Infections drug therapy, HIV-1 isolation & purification, Milk, Human virology, Plasma virology, Valine analogs & derivatives, Viral Load
- Abstract
Background: The effect of herpes simplex virus type 2 (HSV-2) suppression on human immunodeficiency virus type 1 (HIV-1) RNA in the context of prevention of mother-to-child transmission (PMTCT) interventions is unknown., Methods: Between April 2008 and August 2010, we conducted a randomized, double-blind trial of twice daily 500 mg valacyclovir or placebo beginning at 34 weeks gestation in 148 HIV-1/HSV-2 coinfected pregnant Kenyan women ineligible for highly active antiretroviral therapy (CD4 > 250 cells/mm(3)). Women received zidovudine and single dose nevirapine for PMTCT and were followed until 12 months postpartum., Results: Mean baseline plasma HIV-1 RNA was 3.88 log(10) copies/mL. Mean plasma HIV-1 was lower during pregnancy (-.56 log(10) copies/mL; 95% confidence interval [CI], -.77 to -.34) and after 6 weeks postpartum (-.51 log(10) copies/mL; 95% CI, -.73 to -.30) in the valacyclovir arm than the placebo arm. Valacyclovir reduced breast milk HIV-1 RNA detection at 6 and 14 weeks postpartum compared with placebo (30% lower, P = .04; 46% lower, P = .01, respectively), but not after 14 weeks. Cervical HIV-1 RNA detection was similar between arms (P = .91)., Conclusions: Valacyclovir significantly decreased early breast milk and plasma HIV-1 RNA among women receiving PMTCT., Clinical Trials Registration: NCT00530777.
- Published
- 2012
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