Search

Abstract Sustainable and resilient crop production is facing many challenges. The restoration of natural reactive silicon cycles offers an opportunity to improve sustainability through reducing phosphorus fertilizer use and to increase crops’ resilience to drought stress and pests. We therefore call upon farmers, agri-food-researchers, and policymakers to pave the road for transforming agriculture to a silicon-improved sustainable crop production, which represents a promising approach to achieve food security under global change.

The Oriental tea tortrix Homona magnanima Diakonoff, 1948 (Lepidoptera: Tortricidae) has been intercepted three times in Germany on imported plants from Japan since 2023. The moth was found on bonsai of Taxus sp., T. cuspidata and Pinus thunbergii. The findings were diagnosed in a close cooperation between official laboratories in the federal states of Baden-Wurttemberg (Landwirtschaftliches Technologiezentrum Augustenberg), Brandenburg (Landesamt für Ländliche Entwicklung, Landwirtschaft und Flurneuordnung), North Rhine-Westphalia (Landwirtschaftskammer) and the National Reference Laboratory located at Julius Kühn Institute (NRLJKI). DNA barcoding of the COI gene region revealed identical sequences for all findings in Germany. However, the final confirmation by a database comparison with NCBI GenBank and the BOLD database was insufficient, presumably due to incorrectly referenced but also missing entries. Phylogenetic analysis in combination with information on native distribution, host tree preferences and morphological features allowed for a species assignment as Homona magnanima. Following the identification, an Express-Pest Risk Analysis was conducted by the JKI, resulting in a categorisation of the tortrix as a potential quarantine pest.

Abstract This study investigates how amorphous silica (ASi) influences soil–plant–water interactions in distinct soil textures. A sandy loam and silty clay soil were mixed with 0 and 2% ASi, and their impact on soil retention and soil hydraulic conductivity curves were determined. In parallel, tomato plants (Solanum lycopersicum L.) were grown in experimental pots under controlled conditions. When plants were established, the soil was saturated, and a controlled drying cycle ensued until plants reached their wilting points. Soil water content, soil water potential, plant transpiration rate, and leaf water potential were monitored during this process. Results indicate a positive impact of ASi on the sandy loam soil, enhancing soil water content at field capacity (FC, factor of 1.3 times) and at permanent wilting point (PWP, a factor of 3.5 times), while its effect in silty clay loam was negligible (

Soil acidification and low nutrient availability are two major challenges facing agriculture in most regions of East Africa, resulting in aluminum toxicity and poor crop yields. The amendment of local sediments to cropland can potentially alleviate these challenges, but responses are variable. In this study, we investigated the potential of two different local sediments influenced by volcanic deposits to increase soil pH, Si and P availability and reduce Al toxicity, thereby improve barley yield. Hence, a field experiment was established in Eldoret, Western Kenya, using 1% and 3% addition by weight of two sediments in barley cultivated plots. The Baringo 3% amendment significantly increased soil pH (from 4.7 to 7.0), the available P content (from 0.01 mg g−1 to 0.02 mg g−1) and decreased the Al availability (from 3.03 mg g−1–2.17 mg g−1). This resulted in a barley yield of 4.7 t/ha (+1061%). The Nakuru 3% and Baringo 1% amendments increased yield to 2–3 t/ha, while the Nakuru 1% did not significantly increase yield. These results highlight that, from a biophysical perspective, there are natural and local opportunities to reduce soil acidification and to partly replace mineral fertilizer, but its magnitude depends on the sediment and the amendment rate.

In soils, various solid silica (Si) species exhibit different weathering behaviors and surface reactivities, which are among other characteristics related to the crystallinity of the silicate tetrahedral network. Amorphous species exhibit faster weathering and generally possess a larger specific surface area in comparison to crystalline species. However, the characterization of these different species is commonly based on wet chemical extraction methods, which lack selectivity. While Fourier transform infrared spectroscopy (FTIR) in the mid-infrared range can differentiate between short-range ordered aluminosilicates (SROAS) and pure amorphous silica (ASi), few systematic studies are found on the IR spectral features that distinguish solid Si species by crystallinity. This study aims to identify FTIR absorption bands that can differentiate Si species based on their crystallinity. Our data clearly indicate that ASi can be distinguished from very crystalline silica (quartz) and sea sand. The absorption band at approximately 800 cm−1 in the FTIR spectra allows determining the degree of crystallinity of the studied ASi species since the band becomes smaller and the band maximum shifted toward lower wavenumbers with increasing degree of crystallinity. Hence, FTIR spectra may be used to differentiate certain Si species in complex samples like soils, allowing the estimation of weatherability and surface reactivity of those species.

Ecotypic differentiation, reflected in substantial trait differences across populations, has been observed in various plant species distributed across aridity gradients. Nevertheless, ecotypic differentiation in leaf silicon concentration, known to alleviate drought stress in plants, remained hardly explored. Here, we provide a systematic test for ecotypic differentiation in leaf silicon concentration along two aridity gradients in the grass Brachypodium hybridum in Israel. Seed material was sampled in 15 sites along a macroclimatic aridity gradient (89 – 926 mm mean annual rainfall) and from corresponding north (moister) and south (more arid) exposed slopes (microclimatic gradient) at similar altitudes (mean north: 381 m a.s.l., mean south: 385 m a.s.l.). Plants were subsequently grown under common conditions and their leaf silicon concentration was analysed. Leaf silicon concentration increased with increasing aridity across the macroclimatic gradient, but did not differ between north and south slopes. The higher leaf silicon concentrations under more arid conditions can enhance the ability of plants to cope with more arid conditions by two mutually not exclusive mechanisms: (i) withstanding drought by reducing water loss and increasing water uptake or (ii) escaping drought by facilitating fast growth. Our study highlights that leaf silicon concentration contributes to ecotypic differentiation in annual grasses along macroclimatic aridity gradients.

Phosphorus limitation occurs in many soils as a significant amount of soil P is retained in forms inaccessible to plants, such as bound to iron (Fe) minerals. Prior studies have shown that silicon (Si) can mobilize P from the binding sites of such minerals. Several P extraction methods have been developed to account for different P pools. Nevertheless, each of those methods uses different extractants and mechanisms to extract different P pools in soils. However, there is no study comparing different P extraction methods in the presence of Si fertilization. We tested the effect of Si on P mobility and determined the efficiency of water, Calcium acetate lactate (CAL), Mehlich-III, and Bray and Kurtz extraction methods for extracting P in the presence of amorphous silica (ASi) fertilization using two soils of contrasting characteristics. Significantly higher amounts of P were found at 3% ASi treatments (10 and 21 mg P kg-1) compared to the control (4 and 10 mg P kg-1) in the water extract in the high and low-yield soil, respectively just after 6 hours of extraction and increased with time. This may be explained by Si directly competing with P for sorption to Fe minerals. Using CAL extraction, Si addition showed no effect on P extractability. In contrast, the Mehlich-III and Bray extraction methods showed decreasing P extractability, especially at 3% ASi treatment (95 and 60 mg P kg-1) compared to the control (115 and 80 mg P kg-1) for the high-yield soil. The decreasing P contents in the presence of Si found in the Mehlich-III and Bray extracts may be attributed to the decrease in extraction effectiveness of the extractants to extract P while extracting Si and Fe. Our results showed that the Mehlich-III and Bray extraction methods may not be suitable for the determination of P availability in the presence of ASi fertilization since both extractants also extract Si and this may limit the completeness of P extraction. Therefore, in the presence of Si fertilizer, the water extraction method may be suitable to determine P availability and mobilization due to ASi.

Abstract Predicted climate warming and prolonged droughts pose a threat to the soil structure as organic carbon losses weaken the stability of soil aggregates. Well-structured soils are important for storage and movement of water, solutes, and air, the development of plant roots, as habitat for soil organisms, and the microbial activity. Structural stability is measured in terms of hydro-mechanical properties. This study compares effects of amorphous silica with those of organic carbon on stability parameters during drying of aggregates from relatively finer- and coarser-textured soils. Silica amendment enhanced the positive effect of organic carbon on structural stability in terms of the tensile strength. Synergistic effects between silica and organic carbon in soil colloids appear to dynamically alter aggregate density and friability (i.e., ability to crumble) during drying. Silica together with organic carbon could help soil management to reduce negative effects of predicted prolonged droughts on soil structure and stability.

The growing interest in amorphous silica (ASi) within the fields of soil science and ecology underscores the necessity for a reliable protocol to estimate ASi contents in soil. Alkaline wet chemical extraction methods are commonly employed for silicon (Si) extraction from operationally defined (x-ray) amorphous Si phases or short-range ordered mineral phases in soils and marine sediments. In our study we conducted a comparative analysis of four alkaline extraction methods (1% sodium carbonate, 0.5 M sodium carbonate, 0.2 M sodium hydroxide, and 0.1 M Tiron), assessing their extraction selectivity as well as effectiveness using soils artificially enriched with varying, defined amounts of ASi. While extraction effectiveness was evaluated by determining the recovery rate of initially added ASi, extraction selectivity was determined by measuring aluminum (Al) and iron (Fe) concentrations as indicators of the dissolution of non-target mineral phases. Microwave plasma atom emission spectrometry was used to analyze Al, Fe, and Si concentrations in the extracts. Our results indicate that extraction with 0.2 M sodium hydroxide yields the best outcomes in terms of both extraction effectiveness and selectivity. This more recent extraction technique is conducted at the most alkaline pH (13.3) of all four methods tested, but at ambient temperature (21°C) decreasing the dissolution of non-target mineral phases. Though, no wet-chemical extraction used on heterogeneous samples like soil is precisely selective, and thus able to quantify the target analyte only. Hence, data obtained by such procedures still need to be interpreted with caution considering all their limitations.

The potato is the most important non-cereal food crop, and thus improving potato growth and yield is the focus of agricultural researchers and practitioners worldwide. Several studies reported beneficial effects of silicon (Si) fertilization on potato performance, although plant species from the family Solanaceae are generally considered to be non-Si-accumulating. We used results from two field experiments in the temperate zone to gain insight into silica accumulation in potato plants, as well as corresponding long-term potato yield performance. We found relatively low Si contents in potato leaves and roots (up to 0.08% and 0.3% in the dry mass, respectively) and negligible Si contents in potato tuber skin and tuber flesh for plants grown in soils with different concentrations of plant-available Si (field experiment 1). Moreover, potato yield was not correlated to plant-available Si concentrations in soils in the long term (1965–2015, field experiment 2). Based on our results, we ascribe the beneficial effects of Si fertilization on potato growth and yield performance reported in previous studies mainly to antifungal/osmotic effects of foliar-applied Si fertilizers and to changes in physicochemical soil properties (e.g., enhanced phosphorus availability and water-holding capacity) caused by soil-applied Si fertilizers.

The accurate quantification of silicon (Si) contents in plant materials represents a fundamental prerequisite for agricultural plant-soil system or terrestrial ecosystem studies. Si contents in plants are usually calculated from Si concentrations determined spectroscopically in corresponding plant extracts. Inductively coupled plasma optical emission spectrometry (ICP-OES) is widely used in environmental sciences for Si measurements, because this technique is characterized by relatively high sensitivity and low expenditure of human labor. However, as an ICP-OES instrument is also characterized by relatively high acquisition and running costs, it is not readily available to most laboratories. Microwave plasma atomic emission spectroscopy (MP-AES) might represent a cost-effective alternative to ICP-OES. In our study we compared the results obtained from ICP-OES and MP-AES measurements of Si concentrations in Tiron extracts of husk and straw samples of winter wheat (Triticum aestivum) to evaluate the capability of the MP-AES technique for the determination of Si contents in plant materials. Moreover, we correlated these results with data on plant available Si concentrations in corresponding soil samples as well as phytolith contents in the husk and straw samples to evaluate the performance of MP-AES in biogeochemical Si plant-soil studies. Based on our results we found MP-AES to represent a suitable technique for the reliable determination of Si concentrations in Tiron extracts with negligible matrix effects. Our results clearly indicate that MP-AES represents a promising alternative for all researchers with a focus on biogeochemical Si cycling in general.

Silicon-based defenses deter insect herbivores in many cultivated and wild grass species. Furthermore, in some of these species, silicon (Si) uptake and defense can be induced by herbivory. Tropical trees also take up Si and leaf Si concentrations vary greatly across and within species. As herbivory is a major driver of seedling mortality and niche differentiation of tropical tree species, understanding anti-herbivore defenses is pivotal. Yet, whether silicon is a constitutive and inducible herbivory defense in tropical forest tree species remains unknown. We grew seedlings of eight tropical tree species in a full factorial experiment, including two levels of plant-available soil Si concentrations (-Si/+Si) and a simulated herbivory treatment (-H/+H). The simulated herbivory treatment was a combination of clipping and application of methyl jasmonate. We then carried out multiple-choice feeding trials, separately for each tree species, in which leaves of each treatment combination were offered to a generalist caterpillar (Spodoptera frugiperda). Leaf damage was assessed. Three species showed a significant decrease in leaf damage under high compared to low Si conditions (by up to 72%), consistent with our expectation of Si-based defenses acting in tropical tree species. In one species, leaf damage was increased by increasing soil Si and in four species, no effect of soil Si on leaf damage was observed. Opposite to our expectation of Si uptake and defense being inducible by herbivory damage, simulated herbivory increased leaf damage in two species. Furthermore, simulated herbivory reduced Si concentrations in one species. Our results showed that tropical tree seedlings can be better defended when growing in Si-rich compared to Si-poor soils, and that the effects of Si on plant defense vary strongly across species. Furthermore, Si-based defenses may not be inducible in tropical tree species. Overall, constitutive Si-based defense should be considered part of the vast array of anti-herbivore defenses of tropical tree species. Our finding that Si-based defenses are highly species-specific combined with the fact that herbivory is a major driver of mortality in tropical tree seedling, suggests that variation in soil Si concentrations may have pervasive consequences for regeneration and performance across tropical tree species.

Abstract Rice cultivation requires high amounts of phosphorus (P). However, significant amounts of P fertilizer additions may be retained by iron (Fe) oxides and are thus unavailable for plants. At the same time, rice cultivation has a high demand for silicic acid (Si), reducing Si availability after short duration of rice cultivation. By studying a paddy chronosequence with rice cultivation up to 2000 years, we show that Si limitation, observed as early as a few decades of rice cultivation, is limiting P availability along the paddy soils chronosequence. Using near edge X-ray absorption fine structure spectroscopy (NEXAFS) in a scanning transmission (soft) X-ray microscope (STXM) we show release of available P was linked to a Si-induced change in speciation of Fe-phases in soil particles and competition of Si with P for binding sites. Hence, low Si availability is limiting P availability in paddy soils. We propose that proper management of Si availability is a promising tool to improve the P supply of paddy plants.

For the determination of silicon (Si) contents in plant materials several methods are in use, but as all of these methods exhibit specific advantages and drawbacks, none of them has become prevalent. Alkaline chemicals are widely used to extract Si from plant samples, because this method is comparably simple, fast, and cheap. However, a comprehensive method comparison between different alkaline extractions to different plant organs is still missing, as well as understanding of the relationship between Si content quantified with those methods and soil silicon availability. In our study we performed two different alkaline (sodium carbonate (Na2CO3) and Tiron) extractions to determine Si contents in husk and straw samples of winter wheat (Triticum aestivum). Results obtained from hydrofluoric (HF) acid digestion were used as reference as this method is assumed to completely dissolve Si in a plant material. We evaluated the efficacy of simple, single-step Na2CO3 and Tiron extractions in relation to complex, multistep HF extractions and analyzed the relationships between Si and phytolith contents in plant samples and plant available Si concentrations in corresponding soil samples. Irrespective of the plant material used (husk or straw) we found Tiron to be more efficient in Si extraction compared to Na2CO3. While Na2CO3 extractions systematically underestimated Si contents in the tested plant materials, the results of Tiron extractions were comparable to the results of HF digestions, at least for husk samples. Phytolith contents in plant samples were strongly positively correlated to Si contents obtained from extractions, especially in husk samples. Plant available Si in soil samples was also reflected best in husk Si contents. Based on our results we recommend the use of Tiron for the extraction of Si from plant materials as this method provided more reliable results compared to the Na2CO3 extraction.

Abstract There is increased interest in the terrestrial silicon cycle in the last decades as its different compounds and species have large implications for ecosystem performance in terms of soil nutrient and water availability, ecosystem productivity as well as ecological aspects such as plant–microbe and plant-animal feedbacks. The currently existing analytical methods are limited. Fourier-transform infrared spectroscopy (FTIR) analysis is suggested being a promising tool to differentiate between the different Si species. We report here on the differentiation of varying Si-species/Si-binding (in synthetic material) using FTIR-analyses. Therefore, we collected FTIR-spectra of five different amorphous silica, Ca-silicate, sodium silicate (all particulate), a water-soluble fraction of amorphous silica and soil affected by volcanic activity and compared their spectra with existing data. A decrease of the internal order of the materials analyzed was indicated by peak broadening of the Si–O–Si absorption band. Peak shifts at this absorption band were induced by larger ions incorporated in the Si–O–Si network. Additionally, short-range ordered aluminosilicates (SROAS) have specific IR absorption bands such as the Si–O–Al band. Hence, SROAS and Si phases containing other ions can be distinguished from pure amorphous Si species using FTIR-analyses.

Future warming of the Arctic not only threatens to destabilize the enormous pool of organic carbon accumulated in permafrost soils but may also mobilize elements such as calcium (Ca) or silicon (Si). While for Greenlandic soils, it was recently shown that both elements may have a strong effect on carbon dioxide (CO2) production with Ca strongly decreasing and Si increasing CO2 production, little is known about the effects of Si and Ca on carbon cycle processes in soils from Siberia, the Canadian Shield, or Alaska. In this study, we incubated five different soils (rich organic soil from the Canadian Shield and from Siberia (one from the top and one from the deeper soil layer) and one acidic and one non-acidic soil from Alaska) for 6 months under both drained and waterlogged conditions and at different Ca and amorphous Si (ASi) concentrations. Our results show a strong decrease in soil CO2 production for all soils under both drained and waterlogged conditions with increasing Ca concentrations. The ASi effect was not clear across the different soils used, with soil CO2 production increasing, decreasing, or not being significantly affected depending on the soil type and if the soils were initially drained or waterlogged. We found no methane production in any of the soils regardless of treatment. Taking into account the predicted change in Si and Ca availability under a future warmer Arctic climate, the associated fertilization effects would imply potentially lower greenhouse gas production from Siberia and slightly increased greenhouse gas emissions from the Canadian Shield. Including Ca as a controlling factor for Arctic soil CO2 production rates may, therefore, reduces uncertainties in modeling future scenarios on how Arctic regions may respond to climate change.

Abstract Drought and the availability of mineable phosphorus minerals used for fertilization are two of the important issues agriculture is facing in the future. High phosphorus availability in soils is necessary to maintain high agricultural yields. Drought is one of the major threats for terrestrial ecosystem performance and crop production in future. Among the measures proposed to cope with the upcoming challenges of intensifying drought stress and to decrease the need for phosphorus fertilizer application is the fertilization with silica (Si). Here we tested the importance of soil Si fertilization on wheat phosphorus concentration as well as wheat performance during drought at the field scale. Our data clearly showed a higher soil moisture for the Si fertilized plots. This higher soil moisture contributes to a better plant performance in terms of higher photosynthetic activity and later senescence as well as faster stomata responses ensuring higher productivity during drought periods. The plant phosphorus concentration was also higher in Si fertilized compared to control plots. Overall, Si fertilization or management of the soil Si pools seem to be a promising tool to maintain crop production under predicted longer and more serve droughts in the future and reduces phosphorus fertilizer requirements.

Climate scenarios predict more frequent and longer drought periods, potentially threatening agricultural yield. The water holding capacity of soils is crucial in controlling drought stress intensity for plants. Recently, amorphous silica was suggested to increase soil water holding capacity and availability. The objective of this study was to explore the potential impact of Si application to soils on the retention and flow of water in soils and their consequence on plant access to water under soil drying conditions. Two sandy soils were mixed with varying contents (0, 1 and 5% g/g) of some selected ASi amendments. The soil water retention and soil hydraulic conductivity were determined using evaporation measurement device implemented in a commercial device called HYPROP. For both soils, an application of ASi at rates of 1 or 5% increased the water holding capacity and soils treated with ASi maintained a higher hydraulic conductivity under soil drying conditions than the control soil. Simulation demonstrated that soils treated with ASi could longer sustain the transpirational demand of plants during a soil drying cycle. These first results confirm expected positive crop-growth effect of silica amendments on hydraulic properties of coarse-textured soils mainly by longer keeping up capillary flow during water extraction by plant roots.

For the majority of higher plants, silicon (Si) is considered a beneficial element because of the various favorable effects of Si accumulation in plants that have been revealed, including the alleviation of metal(loid) toxicity. The accumulation of non-degradable metal(loid)s in the environment strongly increased in the last decades by intensified industrial and agricultural production with negative consequences for the environment and human health. Phytoremediation, i.e., the use of plants to extract and remove elemental pollutants from contaminated soils, has been commonly used for the restoration of metal(loid)-contaminated sites. In our viewpoint article, we briefly summarize the current knowledge of Si-mediated alleviation of metal(loid) toxicity in plants and the potential role of Si in the phytoremediation of soils contaminated with metal(loid)s. In this context, a special focus is on metal(loid) accumulation in (soil) phytoliths, i.e., relatively stable silica structures formed in plants. The accumulation of metal(loid)s in phytoliths might offer a promising pathway for the long-term sequestration of metal(loid)s in soils. As specific phytoliths might also represent an important carbon sink in soils, phytoliths might be a silver bullet in the mitigation of global change. Thus, the time is now to combine Si/phytolith and phytoremediation research. This will help us to merge the positive effects of Si accumulation in plants with the advantages of phytoremediation, which represents an economically feasible and environmentally friendly way to restore metal(loid)-contaminated sites.

The detection of auto-fluorescence in phytogenic, hydrated amorphous silica depositions (phytoliths) has been found to be a promising approach to verify if phytoliths were burnt or not, especially in archaeological contexts. However, it is unknown so far at what temperature and how auto-fluorescence is induced in phytoliths. We used fluorescence microscopy, scanning electron microscope-energy dispersive X-ray spectroscopy (SEM-EDX), and Fourier transform infrared spectroscopy to analyze auto-fluorescence in modern phytoliths extracted from plant samples or in intact leaves of winter wheat. Leaves and extracted phytoliths were heated at different temperatures up to 600°C. The aims of our experiments were i) to find out what temperature is needed to induce auto-fluorescence in phytoliths, ii) to detect temperature-dependent changes in the molecular structure of phytoliths related to auto-fluorescence, and iii) to derive a mechanistic understanding of auto-fluorescence in phytoliths. We found organic compounds associated with phytoliths to cause auto-fluorescence in phytoliths treated at temperatures below approx. 400°C. In phytoliths treated at higher temperatures, i.e., 450 and 600°C, phytolith auto-fluorescence was mainly caused by molecular changes of phytolith silica. Based on our results we propose that auto-fluorescence in phytoliths is caused by clusterization-triggered emissions, which are caused by overlapping electron clouds forming non-conventional chromophores. In phytoliths heated at temperatures above about 400°C dihydroxylation and the formation of siloxanes result in oxygen clusters that serve as non-conventional chromophores in fluorescence events. Furthermore, SEM-EDX analyses revealed that extractable phytoliths were dominated by lumen phytoliths (62%) compared to cell wall phytoliths (38%). Our findings might be not only relevant in archaeological phytolith-based examinations, but also for studies on the temperature-dependent release of silicon from phytoliths and the potential of long-term carbon sequestration in phytoliths.

Here, Schuldt et al. collate data from two long-term grassland and forest biodiversity experiments to ask how plant diversity facets affect the diversity of higher trophic levels. The results show that positive effects of plant diversity on consumer diversity are mediated by plant structural and functional diversity, and vary across ecosystems and trophic levels.

Background: Onychomycosis numbers among the most common fungal infections in humans affecting finger- or toenails. Histology remains a frequently applied screening technique to diagnose onychomycosis. Screening slides for fungal elements can be time-consuming for pathologists, and sensitivity in cases with low amounts of fungi remains a concern. Convolutional neural networks (CNNs) have revolutionized image classification in recent years. The goal of our project was to evaluate if a U-NET-based segmentation approach as a subcategory of CNNs can be applied to detect fungal elements on digitized histologic sections of human nail specimens and to compare it with the performance of 11 board-certified dermatopathologists. Methods: In total, 664 corresponding H&E- and PAS-stained histologic whole-slide images (WSIs) of human nail plates from four different laboratories were digitized. Histologic structures were manually annotated. A U-NET image segmentation model was trained for binary segmentation on the dataset generated by annotated slides. Results: The U-NET algorithm detected 90.5% of WSIs with fungi, demonstrating a comparable sensitivity with that of the 11 board-certified dermatopathologists (sensitivity of 89.2%). Conclusions: Our results demonstrate that machine-learning-based algorithms applied to real-world clinical cases can produce comparable sensitivities to human pathologists. Our established U-NET may be used as a supportive diagnostic tool to preselect possible slides with fungal elements. Slides where fungal elements are indicated by our U-NET should be reevaluated by the pathologist to confirm or refute the diagnosis of onychomycosis.

Cutaneous vascular tumors consist of a heterogeneous group of benign proliferations, including a range of hemangiomas and vascular malformations, as well as heterogeneous groups of both borderline and malignant neoplasms such as Kaposi’s sarcoma and angiosarcomas. The genetics of these tumors have been assessed independently in smaller individual cohorts making comparisons difficult. In our study, we analyzed a representative cohort of benign vascular proliferations observed in a clinical routine setting as well as a selection of malignant vascular proliferations. Our cohort of 104 vascular proliferations including hemangiomas, malformations, angiosarcomas and Kaposi’s sarcoma were screened by targeted next-generation sequencing for activating genetic mutations known or assumed to be potentially relevant in vascular proliferations. An association analysis was performed for mutation status and clinico-pathological parameters. Frequent activating hotspot mutations in GNA genes, including GNA14 Q205, GNA11 and GNAQ Q209 were identified in 16 of 64 benign vascular tumors (25%). GNA gene mutations were particularly frequent (52%) in cherry (senile) hemangiomas (13 of 25). In angiosarcomas, activating RAS mutations (HRAS and NRAS) were identified in three samples (16%). No activating GNA or RAS gene mutations were identified in Kaposi’s sarcomas. Our study identifies GNA14 Q205, GNA11 and GNAQ Q209 mutations as being the most common and mutually exclusive mutations in benign hemangiomas. These mutations were not identified in malignant vascular tumors, which could be of potential diagnostic value in distinguishing these entities.

Two problems currently facing agriculture are drought and the availability of mineable phosphorus minerals used for fertilization. More frequent and longer drought periods are predicted to threaten agricultural yields in the future. The capacity of soils to hold water is a highly important factor controlling drought stress of plants during the growing phase. High phosphorus availability in soils is also necessary for high agricultural yields, however, over application has also led to a range of environmental problems, foremost being the eutrophication of waterways. Amorphous silica (ASi) has been suggested as one solution to mitigate both water and phosphorus availability. In this work we analyzed the effect of ASi on phosphorus mobility and the soil water storage of a sandy soil. In a lysimeter experiment we found that ASi strongly increased the water storage capacity (WSC) of soils (up to 180% by addition of 3 wt.% ASi). Furthermore, the ASi is in direct competition with phosphorus for sorption sites on iron oxides and other soil minerals increasing nutrient mobilization and increasing potential bioavailability for plants. Following calibration to the lysimeter experiment a process based hydrological model was used to extrapolate experimental results to a sandy agricultural soil with and without ASi for 1 year. For the soil with ASi, the water storage capacities for the yearly scenario were up to 40 kg/m2 higher compared to the untreated soil. Our results suggest that ASi enhances the WSC and phosphorus mobility in soil and that this may be one way to mitigate the predicted climate change related drought stress in sandy soils.

Abstract Peatlands perform important ecosystem functions, such as carbon storage and nutrient retention, which are affected, among other factors, by vegetation and peat decomposition. The availability of silicon (Si) in peatlands differs strongly, ranging from 25 mg L−1. Since decomposition of organic material was recently shown to be accelerated by Si, the aim of this study was to examine how Si influences decomposition of carbon and nutrient and toxicant mobilization in peatlands. We selected a fen site in Northern Bavaria with naturally bioavailable Si pore water concentrations of 5 mg/L and conducted a Si addition experiment. At a fourfold higher Si availability, dissolved organic carbon, carbon dioxide, and methane concentrations increased significantly. Furthermore, dissolved nitrogen, phosphorus, iron, manganese, cobalt, zinc, and arsenic concentrations were significantly higher under high Si availability. This enhanced mobilization may result from Si competing for binding sites but also from stronger reducing conditions, caused by accelerated respiration. The stronger reducing conditions also increased reduction of arsenate to arsenite and thus the mobility of this toxicant. Hence, higher Si availability is suggested to decrease carbon storage and increase nutrient and toxicant mobility in peatland ecosystems.

Accurate and fast assessment of resection margins is an essential part of a dermatopathologist’s clinical routine. In this work, we successfully develop a deep learning method to assist the dermatopathologists by marking critical regions that have a high probability of exhibiting pathological features in whole slide images (WSI). We focus on detecting basal cell carcinoma (BCC) through semantic segmentation using several models based on the UNet architecture. The study includes 650 WSI with 3443 tissue sections in total. Two clinical dermatopathologists annotated the data, marking tumor tissues’ exact location on 100 WSI. The rest of the data, with ground-truth sectionwise labels, are used to further validate and test the models. We analyze two different encoders for the first part of the UNet network and two additional training strategies: (a) deep supervision, (b) linear combination of decoder outputs, and obtain some interpretations about what the network’s decoder does in each case. The best model achieves over 96%, accuracy, sensitivity, and specificity on the Test set.

While Si influences nutrient stoichiometry and decomposition of graminoid litter, it is still unclear how Si influences anoxic litter decomposition and CH4 formation in graminoid dominated fen peatlands. First, Eriophorum vaginatum plants were grown under different Si and P availabilities, then shoots and roots were characterized regarding their proportions of C, Si, N and P and regarding C quality. Subsequently the Eriophorum shoots were subjected to anoxic decomposition. We hypothesized; that (I) litter grown under high Si availability would show a higher Si but lower nutrient mass fractions and a lower share of recalcitrant carbon moieties; (II) high-Si litter would show higher CH4 and CO2 production rates during anoxic decomposition; (III) methanogenesis would occur earlier in less recalcitrant high-Si litter, compared to low-Si litter. We found a higher Si mass fraction that coincides with a general decrease in C and N mass fractions and decreased share of recalcitrant organic moieties. For high-Si litter, the CH4 production rate was higher, but there was no long-term influence on the CO2 production rate. More labile high-Si litter and a differential response in nutrient stoichiometry led to faster onset of methanogenesis. This may have important implications for our understanding of anaerobic carbon turnover in graminoid-rich fens.

Plants’ ability to take up silicon from the soil, accumulate it within their tissues and then reincorporate it into the soil through litter creates an intricate network of feedback mechanisms in ecosystems. Here, we provide a concise review of silicon’s roles in soil chemistry and physics and in plant physiology and ecology, focusing on the processes that form these feedback mechanisms. Through this review and analysis, we demonstrate how this feedback network drives ecosystem processes and affects ecosystem functioning. Consequently, we show that Si uptake and accumulation by plants is involved in several ecosystem services like soil appropriation, biomass supply, and carbon sequestration. Considering the demand for food of an increasing global population and the challenges of climate change, a detailed understanding of the underlying processes of these ecosystem services is of prime importance. Silicon and its role in ecosystem functioning and services thus should be the main focus of future research.

Silicon (Si) speciation and availability in soils is highly important for ecosystem functioning, because Si is a beneficial element for plant growth. Si chemistry is highly complex compared to other elements in soils, because Si reaction rates are relatively slow and dependent on Si species. Consequently, we review the occurrence of different Si species in soil solution and their changes by polymerization, depolymerization, and condensation in relation to important soil processes. We show that an argumentation based on thermodynamic endmembers of Si dependent processes, as currently done, is often difficult, because some reactions such as mineral crystallization require months to years (sometimes even centuries or millennia). Furthermore, we give an overview of Si reactions in soil solution and the predominance of certain solid compounds, which is a neglected but important parameter controlling the availability, reactivity, and function of Si in soils. We further discuss the drivers of soil Si cycling and how humans interfere with these processes. The soil Si cycle is of major importance for ecosystem functioning; therefore, a deeper understanding of drivers of Si cycling (e.g., predominant speciation), human disturbances and the implication for important soil properties (water storage, nutrient availability, and micro aggregate stability) is of fundamental relevance.

Chronic recalcitrant dermatophytoses, due to Trichophyton (T.) mentagrophytes Type VIII are on the rise in India and are noteworthy for their predominance. It would not be wrong to assume that travel and migration would be responsible for the spread of T. mentagrophytes Type VIII from India, with many strains resistant to terbinafine, to other parts of the world. From September 2016 until March 2020, a total of 29 strains of T. mentagrophytes Type VIII (India) were isolated. All patients were residents of Germany: 12 females, 15 males and the gender of the remaining two was not assignable. Patients originated from India (11), Pakistan (two), Bangladesh (one), Iraq (two), Bahrain (one), Libya (one) and other unspecified countries (10). At least two patients were German-born residents. Most samples (21) were collected in 2019 and 2020. All 29 T. mentagrophytes isolates were sequenced (internal transcribed spacer (ITS) and translation elongation factor 1-α gene (TEF1-α)). All were identified as genotype VIII (India) of T. mentagrophytes. In vitro resistance testing revealed 13/29 strains (45%) to be terbinafine-resistant with minimum inhibitory concentration (MIC) breakpoints ≥0.2 µg/mL. The remaining 16 strains (55%) were terbinafine-sensitive. Point mutation analysis revealed that 10/13 resistant strains exhibited Phe397Leu amino acid substitution of squalene epoxidase (SQLE), indicative for in vitro resistance to terbinafine. Two resistant strains showed combined Phe397Leu and Ala448Thr amino acid substitutions, and one strain a single Leu393Phe amino acid substitution. Out of 16 terbinafine-sensitive strains, in eight Ala448Thr, and in one Ala448Thr +, new Val444 Ile amino acid substitutions were detected. Resistance to both itraconazole and voriconazole was observed in three out of 13 analyzed strains. Treatment included topical ciclopirox olamine plus topical miconazole or sertaconazole. Oral itraconazole 200 mg twice daily for four to eight weeks was found to be adequate. Terbinafine-resistant T. mentagrophytes Type VIII are being increasingly isolated. In Germany, transmission of T. mentagrophytes Type VIII from the Indian subcontinent to Europe should be viewed as a significant public health issue.