33 results on '"Jávorfi T"'
Search Results
2. Nature of Irreversible Structural Changes Induced By Intense Light in Thylakoids. Small Angle X-ray and Neutron Scattering of Magnetically Aligned Chloroplasts
- Author
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Jávorfi, T., Amenitsch, H., Laggner, P., Cseh, Z., Mustirdy, L., Borbély, S., Rosta, L., Garab, G., and Garab, G., editor
- Published
- 1998
- Full Text
- View/download PDF
3. Triplet-Triplet Absorption Spectra and Extinction Coefficients of Lutein, Neoxanthin And Violaxanthin
- Author
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Jhutti, C. S., Jávorfi, T., Merzlyak, M. N., Naqvi, K. Razi, and Garab, G., editor
- Published
- 1998
- Full Text
- View/download PDF
4. 8.23 Spectroscopic Analysis: Synchrotron Radiation Circular Dichroism
- Author
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Hussain, R., primary, Jávorfi, T., additional, and Siligardi, G., additional
- Published
- 2012
- Full Text
- View/download PDF
5. Solvatochromism gives a clue to the locations of the S2←S0 and Tn←T1 peaks of LHCII xanthophylls
- Author
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Jávorfi, T., Naqvi, K. Razi, Greve, J., editor, Puppels, G. J., editor, and Otto, C., editor
- Published
- 1999
- Full Text
- View/download PDF
6. Photophysical characteristics of two model antenna systems: a fucoxanthin–pyropheoporbide dyad and its peridinin analogue
- Author
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Osuka, Atsuhiro, Kume, T, Haggquist, G.W, Jávorfi, T, Lima, João Carlos, Melo, Eurico, and Razi Naqvi, K
- Published
- 1999
- Full Text
- View/download PDF
7. Anisotropic organization and microscopic manipulation of self-assembling synthetic porphyrin microrods that mimic chlorosomes: Bacterial light-harvesting systems
- Author
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Chappaz-Gillot, C, Marek, PL, Blaive, BJ, Canard, G, Bürck, J, Garab, G, Hahn, H, Jávorfi, T, Kelemen, L, Krupke, R, Mössinger, D, Ormos, P, Reddy, CM, Roussel, C, Steinbach, G, Szabó, M, Ulrich, AS, Vanthuyne, N, Vijayaraghavan, A, Zupcanova, A, Balaban, TS, Chappaz-Gillot, C, Marek, PL, Blaive, BJ, Canard, G, Bürck, J, Garab, G, Hahn, H, Jávorfi, T, Kelemen, L, Krupke, R, Mössinger, D, Ormos, P, Reddy, CM, Roussel, C, Steinbach, G, Szabó, M, Ulrich, AS, Vanthuyne, N, Vijayaraghavan, A, Zupcanova, A, and Balaban, TS
- Abstract
Being able to control in time and space the positioning, orientation, movement, and sense of rotation of nano- to microscale objects is currently an active research area in nanoscience, having diverse nanotechnological applications. In this paper, we demonstrate unprecedented control and maneuvering of rod-shaped or tubular nanostructures with high aspect ratios which are formed by self-assembling synthetic porphyrins. The self-assembly algorithm, encoded by appended chemical-recognition groups on the periphery of these porphyrins, is the same as the one operating for chlorosomal bacteriochlorophylls (BChl's). Chlorosomes, rod-shaped organelles with relatively long-range molecular order, are the most efficient naturally occurring light-harvesting systems.(1, 2) They are used by green photosynthetic bacteria to trap visible and infrared light of minute intensities even at great depths, e.g., 100 m below water surface or in volcanic vents in the absence of solar radiation. In contrast to most other natural light-harvesting systems, the chlorosomal antennae are devoid of a protein scaffold to orient the BChl's; thus, they are an attractive goal for mimicry by synthetic chemists, who are able to engineer more robust chromophores to self-assemble. Functional devices with environmentally friendly chromophores-which should be able to act as photosensitizers within hybrid solar cells, leading to high photon-to-current conversion efficiencies even under low illumination conditions-have yet to be fabricated. The orderly manner in which the BChl's and their synthetic counterparts self-assemble imparts strong diamagnetic and optical anisotropies and flow/shear characteristics to their nanostructured assemblies, allowing them to be manipulated by electrical, magnetic, or tribomechanical forces. © 2011 American Chemical Society.
- Published
- 2012
8. Reinvestigation of the triplet-minus-singlet spectrum of chloroplasts
- Author
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Jávorfi, T, primary, Garab, G, additional, and Razi Naqvi, K, additional
- Published
- 2000
- Full Text
- View/download PDF
9. Microfluidic devices fabricated using soft lithography for the study of protein structures using synchrotron radiation circular dichroism
- Author
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Charmet, J., Bortolini, C., Copic, D., Morales, I. C., Zhang, Y., pavan kumar challa, Jávorfi, T., Hussain, R., Siligardi, G., and Knowles, T. P. J.
10. Enhancing Circularly Polarized Electroluminescence through Energy Transfer within a Chiral Polymer Host.
- Author
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Moreno-Naranjo JM, Furlan F, Wang J, Ryan STJ, Matulaitis T, Xu Z, Zhang Q, Minion L, Di Girolamo M, Jávorfi T, Siligardi G, Wade J, Gasparini N, Zysman-Colman E, and Fuchter MJ
- Abstract
Organic light-emitting diodes (OLEDs) that are able to emit high levels of circularly polarized (CP) light hold significant promise in numerous future technologies. Such devices require chiral emissive materials to enable CP electroluminescence. However, the vast majority of current OLED emitter classes, including the state-of-the-art triplet-harvesting thermally activated delayed fluorescence (TADF) materials, produce very low levels of CP electroluminescence. Here a host-guest strategy that allows for energy transfer between a chiral polymer host and a representative chiral TADF emitter is showcased. Such a mechanism results in a large amplification of the circular polarization of the emitter. As such, this study presents a promising avenue to further boost the performance of circularly polarized organic light-emitting diode devices, enabling their further development and eventual commercialization., (© 2024 The Author(s). Advanced Materials published by Wiley‐VCH GmbH.)
- Published
- 2024
- Full Text
- View/download PDF
11. Mueller Matrix Polarimetry on Cyanine Dye J -Aggregates.
- Author
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Clowes SR, Răsădean DM, Gianga TM, Jávorfi T, Hussain R, Siligardi G, and Pantoş GD
- Subjects
- Carbocyanines, Circular Dichroism, Coloring Agents, Water
- Abstract
Cyanine dyes are known to form H - and J -aggregates in aqueous solutions. Here we show that the cyanine dye, S0271, assembles in water into vortex induced chiral J -aggregates. The chirality of the J -aggregates depends on the directionality of the vortex. This study utilised both conventional benchtop CD spectropolarimeters and Mueller matrix polarimetry. It was found that J -aggregates have real chirality alongside linear dichroism and linear and circular birefringence. We identify the factors that are key to the formation of metastable chiral J -aggregates and propose a mechanism for their assembly.
- Published
- 2023
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12. Electronic Circular Dichroism Imaging (ECDi) Casts a New Light on the Origin of Solid-State Chiroptical Properties.
- Author
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Górecki M, Lipparini F, Albano G, Jávorfi T, Hussain R, Siligardi G, Pescitelli G, and Di Bari L
- Subjects
- Anisotropy, Circular Dichroism, Electronics
- Abstract
Solid-state ECD (ss-ECD) spectra of a model microcrystalline solid, finasteride, dispersed into a KCl pellet were recorded by using the synchrotron radiation source at the Diamond B23 beamline. Scanning a surface of 36 mm
2 with a step of 0.5 mm, we measured a set of ECD imaging (ECDi) spectra very different from each other and from the ss-ECD recorded with a bench-top instrument (1 cm2 area). This is due to the anisotropic part of the ECD (ACD), which averages to zero in solution or on a large number of randomly oriented crystallites, but can otherwise be extremely large. Two-way singular value decomposition (SVD) analysis, through experimental and simulated TDDFT spectra, disclosed that the measured and theoretical principal components are in line with each other. This finding demonstrates that the observed isotropic ss-ECD spectrum is governed by the anisotropy of locally oriented crystals. It also introduces a new quality for ss-ECD measurements and opens a new future for probing and mapping chiral materials in the solid state such as active pharmaceutical ingredients (APIs)., (© 2021 Wiley-VCH GmbH.)- Published
- 2022
- Full Text
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13. CD Imaging at High Spatial Resolution at Diamond B23 Beamline: Evolution and Applications.
- Author
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Hussain R, Jávorfi T, and Siligardi G
- Abstract
Circular Dichroism imaging in the 190-650 nm spectral region pionered at Diamond Light Source B23 beamline, has been made possible by the highly collimated microbeam generated at the beamline and has been used to study the homogeneity of the supramolecular structures of thin films of chiral materials deposited on fused quartz substrates. This facility has been expanded with the installation of a Mueller Matrix Polarimeter, MMP, coupled to the beamlight, of which a preliminary data will be discussed. In the solid state, the measurement of CD related to the supramolecular structure is hampered by the presence of circular birefringence, linear dichroism, and linear birefringence that can only be evaluated using the MMP technique. The ability to characterize the chiroptical property of thin chiral films prepared under a variety of conditions and protocols such as drop cast, spin coating, spray at different temperatures and concentrations will enable the determination of the critical parameters for reproducible, uniform and homogeneous specimen preparation, which is the sine qua non for any commercial application. This is of particular importance for optoelectronic materials, but it can also be extended to a broad variety of materials with applications from biosensors to biological tissues., Competing Interests: RH, TJ, and GS were employed by Diamond Light Source Ltd., (Copyright © 2021 Hussain, Jávorfi and Siligardi.)
- Published
- 2021
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14. Mapping the Chiroptical Properties of Local Domains in Thin Films of Chiral Silicon Phthalocyanines by CD Imaging.
- Author
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Răsădean DM, Gianga TM, Jávorfi T, Hussain R, Siligardi G, and Pantoș GD
- Subjects
- Circular Dichroism methods, Solvents chemistry, Indoles chemistry, Organosilicon Compounds chemistry, Silicon chemistry
- Abstract
The first example of uniformly chiral thin films of silicon phthalocyanines (SiPcs) are reported. The local domains of the films are mapped using circular dichroism (CD) imaging (CD i ) technique available at the Diamond B23 beamline. The CD i allowed us to increase the spatial resolution up to 525× when compared with benchtop spectrometers. The results indicate formation on-surface of chiral and stable supramolecular assemblies with homogenous distribution. Chemical functionalization and solvent choice for deposition allow controllable chiroptical properties to be obtained. The method and technique reported in this work could be applied to prepare and characterize a wide variety of chiral thin films.
- Published
- 2020
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15. Natural optical activity as the origin of the large chiroptical properties in π-conjugated polymer thin films.
- Author
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Wade J, Hilfiker JN, Brandt JR, Liirò-Peluso L, Wan L, Shi X, Salerno F, Ryan STJ, Schöche S, Arteaga O, Jávorfi T, Siligardi G, Wang C, Amabilino DB, Beton PH, Campbell AJ, and Fuchter MJ
- Abstract
Polymer thin films that emit and absorb circularly polarised light have been demonstrated with the promise of achieving important technological advances; from efficient, high-performance displays, to 3D imaging and all-organic spintronic devices. However, the origin of the large chiroptical effects in such films has, until now, remained elusive. We investigate the emergence of such phenomena in achiral polymers blended with a chiral small-molecule additive (1-aza[6]helicene) and intrinsically chiral-sidechain polymers using a combination of spectroscopic methods and structural probes. We show that - under conditions relevant for device fabrication - the large chiroptical effects are caused by magneto-electric coupling (natural optical activity), not structural chirality as previously assumed, and may occur because of local order in a cylinder blue phase-type organisation. This disruptive mechanistic insight into chiral polymer thin films will offer new approaches towards chiroptical materials development after almost three decades of research in this area.
- Published
- 2020
- Full Text
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16. Anisotropic Circular Dichroism of Light-Harvesting Complex II in Oriented Lipid Bilayers: Theory Meets Experiment.
- Author
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Akhtar P, Lindorfer D, Lingvay M, Pawlak K, Zsiros O, Siligardi G, Jávorfi T, Dorogi M, Ughy B, Garab G, Renger T, and Lambrev PH
- Abstract
Anisotropic circular dichroism (ACD) spectroscopy of macroscopically aligned molecules reveals additional information about their excited states that is lost in the CD of randomly oriented solutions. ACD spectra of light-harvesting complex II (LHCII)-the main peripheral antenna of photosystem II in plants-in oriented lipid bilayers were recorded from the far-UV to the visible wavelength region. ACD spectra show a drastically enhanced magnitude and level of detail compared to the isotropic CD spectra, resolving a greater number of bands and weak optical transitions. Exciton calculations show that the spectral features in the chlorophyll Q
y region are well-reproduced by an existing Hamiltonian for LHCII, providing further evidence for the identity of energy sinks at chlorophylls a603 and a610 in the stromal layer and chlorophylls a604 and a613 in the luminal layer. We propose ACD spectroscopy to be a valuable tool linking the three-dimensional structure and the photophysical properties of pigment-protein complexes.- Published
- 2019
- Full Text
- View/download PDF
17. Resolving protein mixtures using microfluidic diffusional sizing combined with synchrotron radiation circular dichroism.
- Author
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Bortolini C, Kartanas T, Copic D, Condado Morales I, Zhang Y, Challa PK, Peter Q, Jávorfi T, Hussain R, Dong M, Siligardi G, Knowles TPJ, and Charmet J
- Subjects
- Animals, Cattle, Diffusion, Equipment Design, Insulin chemistry, Particle Size, Protein Structure, Secondary, Proteins analysis, Proteins chemistry, Reproducibility of Results, Synchrotrons, Circular Dichroism instrumentation, Circular Dichroism methods, Lab-On-A-Chip Devices, Proteins isolation & purification
- Abstract
Circular dichroism spectroscopy has become a powerful tool to characterise proteins and other biomolecules. For heterogeneous samples such as those present for interacting proteins, typically only average spectroscopic features can be resolved. Here we overcome this limitation by using free-flow microfluidic size separation in-line with synchrotron radiation circular dichroism to resolve the secondary structure of each component of a model protein mixture containing monomers and fibrils. To enable this objective, we have integrated far-UV compatible measurement chambers into PDMS-based microfluidic devices. Two architectures are proposed so as to accommodate for a wide range of concentrations. The approach, which can be used in combination with other bulk measurement techniques, paves the way to the study of complex mixtures such as the ones associated with protein misfolding and aggregation diseases including Alzheimer's and Parkinson's diseases.
- Published
- 2018
- Full Text
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18. Circular dichroism studies of low molecular weight hydrogelators: The use of SRCD and addressing practical issues.
- Author
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Sitsanidis ED, Piras CC, Alexander BD, Siligardi G, Jávorfi T, Hall AJ, and Edwards AA
- Abstract
Circular dichroism (CD) spectroscopy has been used extensively for the investigation of the conformation and configuration of chiral molecules, but its use for evaluating the mode of self-assembly in soft materials has been limited. Herein, we report a protocol for the study of such materials by electronic CD spectroscopy using commercial/benchtop instruments and synchrotron radiation (SR) using the B23 beamline available at Diamond Light Source. The use of the B23 beamtime for SRCD was advantageous because of the unique enhanced spatial resolution achieved because of its highly collimated and small beamlight cross section (ca. 250 μm) and higher photon flux in the far UV region (175-250 nm) enhancing the signal-to-noise ratio relative to benchtop CD instruments. A set of low molecular weight (LMW) hydrogelators, comprising two Fmoc-protected enantiomeric monosaccharides and one Fmoc dipeptide (Fmoc-FF), were studied. The research focused on the optimization of sample preparation and handling, which then enabled the characterization of sample conformational homogeneity and thermal stability. CD spectroscopy, in combination with other spectroscopic techniques and microscopy, will allow a better insight into the self-assembly of chiral building blocks into higher order structural architectures., (© 2018 Wiley Periodicals, Inc.)
- Published
- 2018
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19. To Boil an Egg: Substrate Binding Affects Critical Stability in Thermal Unfolding of Proteins.
- Author
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Hussain R, Hughes CS, Jávorfi T, Siligardi G, Williams P, and Bonev BB
- Subjects
- Binding Sites, Protein Stability, Protein Unfolding, Proteins chemistry, Thermodynamics
- Abstract
Thermal unfolding of proteins is used extensively in screening of drug candidates because molecular interactions with ligands and substrates affect strongly protein stability, transition temperature, and cooperativity. We use synchrotron radiation circular dichroism to monitor the thermal evolution of secondary structure in proteins as they approach the melting point and the impact of substrate on their thermal behavior. Using Landau free energy expansion, we quantify transition strength and proximity to a critical point through the relative separation τ
+ between the transition temperature Tm and the spinodal T+ , obtained from the equation of state. The weakest transition was observed in lysozyme with τ+ = -0.0167 followed by holo albumin with τ+ = -0.0208 with the strongest transition in monomeric apo albumin τ+ = -0.0242. A structural transition at 45 °C in apo albumin leads to a noncooperative melt with τ+ = -0.00532 and amyloidogenic increase in beta content.- Published
- 2018
- Full Text
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20. High-throughput SRCD using multi-well plates and its applications.
- Author
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Hussain R, Jávorfi T, Rudd TR, and Siligardi G
- Subjects
- Humans, Protein Folding, Synchrotrons, Circular Dichroism instrumentation, Proteins chemistry
- Abstract
The sample compartment for high-throughput synchrotron radiation circular dichroism (HT-SRCD) has been developed to satisfy an increased demand of protein characterisation in terms of folding and binding interaction properties not only in the traditional field of structural biology but also in the growing research area of material science with the potential to save time by 80%. As the understanding of protein behaviour in different solvent environments has increased dramatically the development of novel functions such as recombinant proteins modified to have different functions from harvesting solar energy to metabolonics for cleaning heavy and metal and organic molecule pollutions, there is a need to characterise speedily these system.
- Published
- 2016
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21. Photo-induced optical activity in phase-change memory materials.
- Author
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Borisenko KB, Shanmugam J, Williams BA, Ewart P, Gholipour B, Hewak DW, Hussain R, Jávorfi T, Siligardi G, and Kirkland AI
- Abstract
We demonstrate that optical activity in amorphous isotropic thin films of pure Ge2Sb2Te5 and N-doped Ge2Sb2Te5N phase-change memory materials can be induced using rapid photo crystallisation with circularly polarised laser light. The new anisotropic phase transition has been confirmed by circular dichroism measurements. This opens up the possibility of controlled induction of optical activity at the nanosecond time scale for exploitation in a new generation of high-density optical memory, fast chiroptical switches and chiral metamaterials.
- Published
- 2015
- Full Text
- View/download PDF
22. Electronic circular dichroism of the chiral rigid tricyclic dilactam with nonplanar tertiary amide groups.
- Author
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Pazderková M, Profant V, Seidlerová B, Dlouhá H, Hodačová J, Jávorfi T, Siligardi G, Baumruk V, Bednárová L, and Maloň P
- Abstract
Electronic circular dichroism (ECD) of the spirocyclic dilactam 5,8-diazatricyclo[6,3,0,0(1,5)]undecane-4,9-dione has been measured in the extended wavelength range (170-260 nm) utilizing far-UV CD instrumentation including synchrotron radiation light source. The data of this model of two nonplanar tertiary amide groups interacting within the rigid chiral environment provided new information particularly about the shorter wavelength π-π* transition region below 190 nm. The interpretation using TDDFT calculations confirmed that effects of amide nonplanarity follow our previous observations on monolactams as far as amide n-π* transitions are concerned. ECD band in the n-π* transition region of the nonplanar diamide exhibits an identical bathochromic shift and its sign remains tied to the sense of nonplanar deformation in the same way. As far as n-π* transitions are concerned amide nonplanarity acts as a local phenomenon independently reflecting sum properties of single amide groups. On the other hand, CD bands associated with π-π* transitions (found between ∼170 to 210 nm) form an exciton-like couplet with the sign pattern determined by mutual orientation of the associated electric transition moments. This sign pattern follows predictions pertaining to a coupled oscillator. The influence of amide nonplanarity on π-π* transitions is only minor and concentrates into the shorter wavelength lobe of the π-π* couplet. The detailed analysis of experimental ECD with the aid of TDDFT calculations shows that there is only little interaction between effects of inherent chirality caused by nonplanarity of amide groups and amide-amide coupling. Consequently these two effects can be studied nearly independently using ECD. In addition, the calculations indicate that participation of other type of transitions (n-σ*, π-σ* or Rydberg type transitions) is only minor and is concentrated below 180 nm.
- Published
- 2014
- Full Text
- View/download PDF
23. Anisotropic circular dichroism signatures of oriented thylakoid membranes and lamellar aggregates of LHCII.
- Author
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Miloslavina Y, Lambrev PH, Jávorfi T, Várkonyi Z, Karlický V, Wall JS, Hind G, and Garab G
- Subjects
- Anisotropy, Light, Light-Harvesting Protein Complexes isolation & purification, Light-Harvesting Protein Complexes radiation effects, Photosystem II Protein Complex isolation & purification, Photosystem II Protein Complex radiation effects, Spinacia oleracea radiation effects, Thylakoids radiation effects, Circular Dichroism methods, Light-Harvesting Protein Complexes chemistry, Photosystem II Protein Complex chemistry, Spinacia oleracea chemistry, Thylakoids chemistry
- Abstract
In photosynthesis research, circular dichroism (CD) spectroscopy is an indispensable tool to probe molecular architecture at virtually all levels of structural complexity. At the molecular level, the chirality of the molecule results in intrinsic CD; pigment-pigment interactions in protein complexes and small aggregates can give rise to excitonic CD bands, while "psi-type" CD signals originate from large, densely packed chiral aggregates. It has been well established that anisotropic CD (ACD), measured on samples with defined non-random orientation relative to the propagation of the measuring beam, carries specific information on the architecture of molecules or molecular macroassemblies. However, ACD is usually combined with linear dichroism and can be distorted by instrumental imperfections, which given the strong anisotropic nature of photosynthetic membranes and complexes, might be the reason why ACD is rarely studied in photosynthesis research. In this study, we present ACD spectra, corrected for linear dichroism, of isolated intact thylakoid membranes of granal chloroplasts, washed unstacked thylakoid membranes, photosystem II (PSII) membranes (BBY particles), grana patches, and tightly stacked lamellar macroaggregates of the main light-harvesting complex of PSII (LHCII). We show that the ACD spectra of face- and edge-aligned stacked thylakoid membranes and LHCII lamellae exhibit profound differences in their psi-type CD bands. Marked differences are also seen in the excitonic CD of BBY and washed thylakoid membranes. Magnetic CD (MCD) spectra on random and aligned samples, and the largely invariable nature of the MCD spectra, despite dramatic variations in the measured isotropic and anisotropic CD, testify that ACD can be measured without substantial distortions and thus employed to extract detailed information on the (supra)molecular organization of photosynthetic complexes. An example is provided showing the ability of CD data to indicate such an organization, leading to the discovery of a novel crystalline structure in macroaggregates of LHCII.
- Published
- 2012
- Full Text
- View/download PDF
24. Anisotropic organization and microscopic manipulation of self-assembling synthetic porphyrin microrods that mimic chlorosomes: bacterial light-harvesting systems.
- Author
-
Chappaz-Gillot C, Marek PL, Blaive BJ, Canard G, Bürck J, Garab G, Hahn H, Jávorfi T, Kelemen L, Krupke R, Mössinger D, Ormos P, Reddy CM, Roussel C, Steinbach G, Szabó M, Ulrich AS, Vanthuyne N, Vijayaraghavan A, Zupcanova A, and Balaban TS
- Subjects
- Anisotropy, Bacteriochlorophylls chemistry, Circular Dichroism, Membranes, Artificial, Microscopy, Electron, Scanning, Models, Molecular, Molecular Structure, Light-Harvesting Protein Complexes chemical synthesis, Porphyrins chemical synthesis
- Abstract
Being able to control in time and space the positioning, orientation, movement, and sense of rotation of nano- to microscale objects is currently an active research area in nanoscience, having diverse nanotechnological applications. In this paper, we demonstrate unprecedented control and maneuvering of rod-shaped or tubular nanostructures with high aspect ratios which are formed by self-assembling synthetic porphyrins. The self-assembly algorithm, encoded by appended chemical-recognition groups on the periphery of these porphyrins, is the same as the one operating for chlorosomal bacteriochlorophylls (BChl's). Chlorosomes, rod-shaped organelles with relatively long-range molecular order, are the most efficient naturally occurring light-harvesting systems. They are used by green photosynthetic bacteria to trap visible and infrared light of minute intensities even at great depths, e.g., 100 m below water surface or in volcanic vents in the absence of solar radiation. In contrast to most other natural light-harvesting systems, the chlorosomal antennae are devoid of a protein scaffold to orient the BChl's; thus, they are an attractive goal for mimicry by synthetic chemists, who are able to engineer more robust chromophores to self-assemble. Functional devices with environmentally friendly chromophores-which should be able to act as photosensitizers within hybrid solar cells, leading to high photon-to-current conversion efficiencies even under low illumination conditions-have yet to be fabricated. The orderly manner in which the BChl's and their synthetic counterparts self-assemble imparts strong diamagnetic and optical anisotropies and flow/shear characteristics to their nanostructured assemblies, allowing them to be manipulated by electrical, magnetic, or tribomechanical forces., (© 2011 American Chemical Society)
- Published
- 2012
- Full Text
- View/download PDF
25. Circular dichroism beamline B23 at the Diamond Light Source.
- Author
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Hussain R, Jávorfi T, and Siligardi G
- Abstract
Synchrotron radiation circular dichroism (SRCD) is a well established technique in structural biology. The first UV-VIS beamline, dedicated to circular dichroism, at Diamond Light Source Ltd, a third-generation synchrotron facility in south Oxfordshire, UK, has recently become operational and it is now available for the user community. Herein the main characteristics of the B23 SRCD beamline, the ancillary facilities available for users, and some of the recent advances achieved are summarized.
- Published
- 2012
- Full Text
- View/download PDF
26. Cyclic α,β-peptoid octamers with differing side chain patterns: synthesis and conformational investigation.
- Author
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De Santis E, Hjelmgaard T, Faure S, Roy O, Didierjean C, Alexander BD, Siligardi G, Hussain R, Jávorfi T, Edwards AA, and Taillefumier C
- Subjects
- Circular Dichroism, Crystallography, X-Ray, Magnetic Resonance Spectroscopy, Molecular Conformation, Peptoids chemical synthesis, Peptoids chemistry
- Abstract
The solution-phase synthesis and cyclisation of three α,β-peptoid octamers with differing side chain patterns is reported. One of these, compound C, showed a significantly greater resolution by NMR relative to the other two structurally related octamers. This observation was studied in detail by circular dichroism at a synchrotron light source to facilitate the correlation between the side chain patterns and conformational preference of these three peptoids. The X-ray crystal structure of cyclic octamer C, the first high-resolution structure for the α,β-peptoid backbone, was also obtained from methanol. Combined solid- and solution-phase studies allowed the identification of the N-2-(benzyloxy)ethyl side chain on the β-residue of the heterogeneous backbone as a key structural feature driving the increased conformational stability for octamer C.
- Published
- 2011
- Full Text
- View/download PDF
27. Measuring circular dichroism in a capillary cell using the b23 synchrotron radiation CD beamline at diamond light source.
- Author
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Jávorfi T, Hussain R, Myatt D, and Siligardi G
- Subjects
- Light, Protein Structure, Secondary, Circular Dichroism instrumentation, Circular Dichroism methods
- Abstract
Synchrotron radiation circular dichroism (SRCD) is a well-established method in structural biology. The first UV-VIS beamline dedicated to circular dichroism at Diamond Light Source, a third generation synchrotron facility in South Oxfordshire, has recently become operational and it is now available for the user community. Herein we present an important application of SRCD: the CD measurement of protein solutions in fused silica rectangular capillary cells. This was achieved without the use of any lens between the photoelastic modulator and the photomultiplier tube detectors by exploiting the high photon flux of the collimated beam that can be as little as half a millimeter squared. Measures to minimize or eliminate vacuum-UV protein denaturation effects are discussed. The CD spectra measured in capillaries is a proof of principle to address CD measurements in microdevice systems using the new B23 SRCD beamline., (© 2010 Wiley-Liss, Inc.)
- Published
- 2010
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28. Facile method for spectroscopic examination of radical ions of hydrophilic carotenoids.
- Author
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Naqvi KR, Melø TB, Jávorfi T, González-Pérez S, and Arellano JB
- Subjects
- Acetonitriles chemistry, Anions, Chemistry, Physical methods, Electrochemistry methods, Electrons, Free Radicals, Hydrogen-Ion Concentration, Hydrophobic and Hydrophilic Interactions, Ions, Light, Protons, Solvents chemistry, Carotenoids chemistry, Photochemistry methods, Spectrophotometry methods
- Abstract
Hydrophilic carotenoids, unusual members of an intrinsically hydrophobic family, and their radical ions are important reactants. An all-optical method for generating singly charged radical ions of a hydrophilic carotenoid (Car) is described. It relies on photolyzing an aqueous mixture of Car and a photoionizable auxiliary solute (A), and making conditions conducive to the capture, by Car, of the hydrated electron (e(aq)(-)) or the positive hole in A(*)(+) or both. When A is Trolox (TOH), only e(aq)(-) can be captured, since TOH (*)(+) deprotonates too rapidly to be a hole donor; when A is Trolox methyl ether (TOMe), both Car(*)(-) and Car(*)(+) are formed, since TOMe (+) lives long enough to transfer its positive hole to Car; formation of Car(*)(-) is prevented under aerobic conditions.
- Published
- 2009
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- View/download PDF
29. The negatively charged amino acids in the lumenal loop influence the pigment binding and conformation of the major light-harvesting chlorophyll a/b complex of photosystem II.
- Author
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Yang C, Lambrev P, Chen Z, Jávorfi T, Kiss AZ, Paulsen H, and Garab G
- Subjects
- Amino Acids chemistry, Chlorophyll chemistry, Circular Dichroism, Electrophoresis, Polyacrylamide Gel, Hydrogen-Ion Concentration, Molecular Conformation, Photosystem II Protein Complex chemistry, Protein Binding, Amino Acids metabolism, Chlorophyll metabolism, Photosystem II Protein Complex metabolism, Pigments, Biological metabolism
- Abstract
The major chlorophyll (Chl) a/b complexes of photosystem II (LHCIIb), in addition to their primary light-harvesting function, play key roles in the organization of the granal ultrastructure of the thylakoid membranes and in various regulatory processes. These functions depend on the structural stability and flexibility of the complexes. The lumenal side of LHCIIb is exposed to broadly variable pH environments, due to the build-up and decay of the pH gradient during photosynthesis. Therefore, the negatively charged amino acids in the lumenal loop might be of paramount importance for adjusting the structure and functions of LHCIIb. In order to clarify the structural roles of these residues, we investigated the pigment stoichiometries, absorption, linear and circular dichroism spectra of the reconstituted LHCIIb complexes, in which the negatively charged amino acids in the lumenal loop were exchanged to neutral ones (E94G, E107V and D111V). The mutations influenced the pigment binding and the molecular architecture of the complexes. Exchanging E94 to G destabilized the 3(10) helix in the lumenal loop structure and led to an acquired pH sensitivity of the LHCIIb structure. We conclude that these amino acids are important not only for pigment binding in the complexes, but also in stabilizing the conformation of LHCIIb at different pHs.
- Published
- 2008
- Full Text
- View/download PDF
30. Heat- and light-induced reorganizations in the phycobilisome antenna of Synechocystis sp. PCC 6803. Thermo-optic effect.
- Author
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Stoitchkova K, Zsiros O, Jávorfi T, Páli T, Andreeva A, Gombos Z, and Garab G
- Subjects
- Phycobilisomes metabolism, Hot Temperature, Light, Phycobilisomes chemistry, Phycobilisomes radiation effects, Synechocystis chemistry
- Abstract
By using absorption and fluorescence spectroscopy, we compared the effects of heat and light treatments on the phycobilisome (PBS) antenna of Synechocystis sp. PCC 6803 cells. Fluorescence emission spectra obtained upon exciting predominantly PBS, recorded at 25 degrees C and 77 K, revealed characteristic changes upon heat treatment of the cells. A 5-min incubation at 50 degrees C, which completely inactivated the activity of photosystem II, led to a small but statistically significant decrease in the F(680)/F(655) fluorescence intensity ratio. In contrast, heat treatment at 60 degrees C resulted in a much larger decrease in the same ratio and was accompanied by a blue-shift of the main PBS emission band at around 655 nm (F(655)), indicating an energetic decoupling of PBS from chlorophylls and reorganizations in its internal structure. (Upon exciting PBS, F(680) originates from photosystem II and from the terminal emitter of PBS.). Very similar changes were obtained upon exposing the cells to high light (600-7500 micromol photons m(-2) s(-1)) for different time periods (10 min to 3 h). In cells with heat-inactivated photosystem II, the variations caused by light treatment could clearly be assigned to a similar energetic decoupling of the PBS from the membrane and internal reorganizations as induced at around 60 degrees C. These data can be explained within the frameworks of thermo-optic mechanism [Cseh et al. 2000, Biochemistry 39, 15250]: in high light the heat packages originating from dissipation might lead to elementary structural changes in the close vicinity of dissipation in heat-sensitive structural elements, e.g. around the site where PBS is anchored to the membrane. This, in turn, brings about a diminishment in the energy supply from PBS to the photosystems and reorganization in the molecular architecture of PBS.
- Published
- 2007
- Full Text
- View/download PDF
31. Comparative study of integrating cavity absorption meters.
- Author
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Erostyák J, Jávorfi T, Buzády A, Naqvi KR, and Garab G
- Subjects
- Absorption, Cyanobacteria chemistry, Scattering, Radiation, Spectrophotometry methods, Spectrophotometry statistics & numerical data, Surface Properties, Thylakoids chemistry, Spectrophotometry instrumentation
- Abstract
Integrating spheres (IS) are widely used for recording spectra of scattering samples by placing the specimen inside or outside the sphere. An unusual application of integrating spheres has been also demonstrated earlier where the liquid sample completely filled the spherical cavity; such a device is often called an integrating cavity absorption meter (ICAM). In the present work, integrating cavities with different coatings are compared. The spheres were made of glass, covered by metal or white paint, and their surfaces were prepared for diffuse or specular reflectance. The spheres were evaluated by recording kinetic traces following a short light pulse with the aid of time-correlated single photon counting (TCSPC), and by recording steady-state spectra through single-photon counting (SPC) detection. The relative efficiencies of the spheres were determined by comparing the steady-state spectra. Possible reasons for differences in the performance are discussed.
- Published
- 2006
- Full Text
- View/download PDF
32. Singlet oxygen quenching by thione analogues of canthaxanthin, echinenone and rhodoxanthin.
- Author
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Mohamad SB, Yousef YA, Melø TB, Jávorfi T, Partali V, Sliwka HR, and Razi Naqvi K
- Subjects
- Canthaxanthin chemistry, Carotenoids chemistry, Singlet Oxygen chemistry, Thiones chemistry, Xanthophylls chemistry
- Abstract
Thione analogues of three naturally occurring carotenones (canthaxanthin, echinenone, and rhodoxanthin) were synthesized just over ten years ago, and it was reported that substitution of the oxygen atom by sulphur brings about a large red shift and some broadening in the optical absorption spectrum of the compound. Since the three carotenothiones are scarce, determination of their molar absorption coefficients presents a challenge. A method for relating the molar absorption coefficient of a carotenothione (Car-S) to that of its ketone analogue (Car-O) has been developed, which has revealed that the peak molar absorption coefficient of a Car-S is only about 60% of the corresponding value for Car-O. Using methylene blue as the sensitizer and acetonitrile as the solvent, we have also investigated the quenching (under photostationary conditions) of the 1270nm phosphorescence emission of singlet oxygen by each of the six carotenoids. The data conform to the Stern-Volmer relation, and show that substitution of a carbonyl oxygen atom by sulphur does not lead to an appreciable change in the value of the quenching constant, which is close to 1.5 x 10(10)M(-1)s(-1) for all six quenchers.
- Published
- 2006
- Full Text
- View/download PDF
33. Quantitative spectrophotometry using integrating cavities.
- Author
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Jávorfi T, Erostyák J, Gál J, Buzády A, Menczel L, Garab G, and Razi Naqvi K
- Subjects
- Calibration, Equipment Design, Fluorescent Dyes chemistry, Reproducibility of Results, Rosaniline Dyes chemistry, Rose Bengal chemistry, Chloroplasts chemistry, Spectrophotometry instrumentation
- Abstract
Absorption spectrophotometry, a standard tool for quantitative analysis, suffers from two major drawbacks: lack of sensitivity and vulnerability to scattering. It has been pointed out earlier that the solution to these problems lies in using a reflecting cavity as a sample holder. Due to multiple reflections at the cavity wall, the effective pathlength becomes considerably larger than the diameter of the cavity, and scattering losses are eliminated because scattered light is prevented from escaping the detector. Though much effort has been spent in analysing and improving the performance of such a device, often called an integrating cavity absorption meter (ICAM), a simple strategy for deducing the absorbance of the sample is still lacking. It is shown here that the absorbance A' measured by using an ICAM exhibits a sublinear increase with the solute concentration C. The physical reason for this departure from linearity is explained, and a straightforward procedure for converting A' to the true absorbance A (proportional to C) is established. The reliability of the procedure is demonstrated by comparing the ICAM absorption spectrum of dilute dye solutions with the spectra of more concentrated solutions recorded in a conventional spectrophotometer. The ability of the device to cope with scattering was tested by filling the ICAM with a suspension of chloroplasts, and the spectrum was found, as expected, to be free from scattering artefacts.
- Published
- 2006
- Full Text
- View/download PDF
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