101 results on '"Isabel Figueroa"'
Search Results
2. Antibody-drug conjugates: integrated bioanalytical and biodisposition assessments in lead optimization and selection
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Maribel Beaumont, Daniela Tomazela, Douglas Hodges, Grigori Ermakov, Edward Hsieh, Isabel Figueroa, On-Yee So, Yaoli Song, Huiping Ma, Svetlana Antonenko, Wondwessen Mengesha, Yi Wei Zhang, Shuli Zhang, SuChun Hseih, Gulesi Ayanoglu, Xiaoyan Du, Eric Rimmer, Michael Judo, Franklin Vives, Jennifer H. Yearley, Christina Moon, Anthony Manibusan, Nick Knudsen, Andy Beck, Damien Bresson, Dennis Gately, Divas Neupane, and Enrique Escandón
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Antibody-drug conjugates ,Immunoassay ,LC-MS ,Biodisposition ,CD74 ,CD25 ,Therapeutics. Pharmacology ,RM1-950 ,Pharmacy and materia medica ,RS1-441 - Abstract
Abstract Therapies based on monoclonal antibodies (mAbs) have delivered an impressive success in the clinics due to their exquisite specificity, potential for agonistic or antagonistic responses, tunable effector function, and optimal pharmacokinetic properties. Building on these inherent antibody properties, the design and development of antibody-drug conjugates (ADCs) with improved or gained therapeutic activity and safety has been successfully demonstrated in oncological applications. There is enormous potential for this new type of hybrid biologics but there are also significant engineering, manufacturing and bioanalytical challenges. In this manuscript, we highlight the range and diversity of assays that are critical to characterize the individual components of ADCs-linker, carrier, and payload. We discuss a series of in vitro and in vivo preclinical experimental approaches we implemented to characterize two anti-inflammatory steroid bearing ADCs, and an ADC bearing a modified glucagon-like peptide 1 receptor/glucagon receptor co-agonist peptide.
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- 2018
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3. Production, Marketing, Sustainability, and Price Forecast of Potato in the Gran Mercado Mayorista de Lima - Peru
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Quiñones, Ricardo Enrique Toledo, Ramirez-Asis, Hernan, Custodio, Wilmer Francisco Siccha, Quito, Silvia Isabel Figueroa, Villanueva-Calderón, Juan, Hamdan, Allam, Editorial Board Member, Al Madhoun, Wesam, Editorial Board Member, Alareeni, Bahaaeddin, Editor-in-Chief, Baalousha, Mohammed, Editorial Board Member, Elgedawy, Islam, Editorial Board Member, Hussainey, Khaled, Editorial Board Member, Eleyan, Derar, Editorial Board Member, Hamdan, Reem, Editorial Board Member, Salem, Mohammed, Editorial Board Member, Jallouli, Rim, Editorial Board Member, Assaidi, Abdelouahid, Editorial Board Member, Nawi, Noorshella Binti Che, Editorial Board Member, AL-Kayid, Kholoud, Editorial Board Member, Wolf, Martin, Editorial Board Member, El Khoury, Rim, Editorial Board Member, Jaheer Mukthar, K. P., editor, Mansour, Nadia, editor, and Asis, Edwin Ramirez, editor
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- 2024
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4. Conocimiento declarativo, procedimental y metacognitivo en instancias orales de estudiantes de ELE
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Paula Inés Actis and Lucía Isabel Figueroa
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Esta investigación se propone correlacionar el uso efectivo que estudiantes de ELE hacen de las estrategias comunicativas orales (ECO) con su conocimiento declarativo acerca del uso de estas estrategias. La temática de las ECO en relación con la metacognición es de gran interés en los estudios de ELE. Sin embargo, el rol que juega la conciencia de los sujetos sobre su propia competencia estratégica y el papel de la enseñanza de la metacognición en la oralidad son interrogantes sin una respuesta unívoca. Este trabajo de análisis es la continuación de un estudio previo (Actis y Figueroa, 2020). Luego de sumar al análisis del grupo de control el del grupo intervenido, identificamos algunas diferencias en el uso de estrategias. Si bien estos resultados son provisorios, resultan indispensables para continuar indagando sobre el funcionamiento de la conciencia que los hablantes tienen de su uso de estrategias comunicativas y cuál es la utilidad de su enseñanza en las aulas de ELE.
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- 2022
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5. Magnetic ordering and its influence on X-ray spectroscopies
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Gerrit van der Laan and Adriana Isabel Figueroa
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- 2022
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6. Anti–Lymphocyte Antigen 6 Complex, Locus E-Seco-Cyclopropabenzindol-4-One-Dimer Antibody-Drug Conjugate That Forms Adduct withα1-Microglobulin Demonstrates Slower Systemic Antibody Clearance and Reduced Tumor Distribution in Animals
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Ben-Quan Shen, Shab Masih, Brandon Latifi, Isabel Figueroa, Carl Ng, Doug Leipold, Victor Yip, and Amrita V. Kamath
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Pharmacology ,Antibody-drug conjugate ,biology ,Chemistry ,medicine.drug_class ,Beta-2 microglobulin ,Pharmaceutical Science ,Monoclonal antibody ,030226 pharmacology & pharmacy ,Molecular biology ,In vitro ,Adduct ,body regions ,03 medical and health sciences ,0302 clinical medicine ,Antigen ,030220 oncology & carcinogenesis ,biology.protein ,medicine ,Antibody ,Conjugate - Abstract
Anti-Ly6E-seco-cyclopropabenzindol-4-one dimer antibody-drug conjugate (ADC) has been reported to form an adduct with α1-microglobulin (A1M) in animal plasma, but with unknown impact on ADC PK and tissue distribution. In this study, we compared the PK and tissue distribution of anti-Ly6E ADC with unconjugated anti-Ly6E mAb in rodents and monkeys. For PK studies, animals received an intravenous administration of anti-Ly6E ADC or unconjugated anti-Ly6E mAb. Plasma samples were analyzed for total antibody (Tab) levels and A1M adduct formation. PK parameters were generated from dose-normalized plasma concentrations. Tissue distribution was determined in tumor-bearing mice after a single intravenous dosing of radiolabeled ADC or mAb. Tissue radioactivity levels were analyzed using a gamma counter. The impact of A1M adduct formation on target cell binding was assessed in an in vitro cell binding assay. The results show that ADC Tab clearance was slower than that of mAb in mice and rats but faster than mAb in monkeys. Correspondingly, the formation of A1M adduct appeared to be faster and higher in mice, followed by rats, and slowest in monkeys. Although ADC tended to show an overall lower distribution to normal tissues, it had a strikingly reduced distribution to tumors compared with mAb, likely due to A1M adduct formation interfering with target binding, as demonstrated by the in vitro cell binding assay. Together, these data 1) demonstrate that anti-Ly6E ADC that forms A1M adduct had slower systemic clearance with strikingly reduced tumor distribution and 2) highlight the importance of selecting an appropriate linker-drug for successful ADC development. SIGNIFICANCE STATEMENT: Anti-lymphocyte antigen 6 complex, locus E, ADC with seco-cyclopropabenzindol-4-one-dimer payload formed adduct with A1M, which led to a decrease in systemic clearance but also attenuated tumor distribution. These findings demonstrate the importance of selecting an appropriate linker-drug for ADC development and also highlight the value of a mechanistic understanding of ADC biotransformation, which could provide insight into ADC molecule design, optimization, and selection.
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- 2020
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7. Development of a therapeutic anti-HtrA1 antibody and the identification of DKK3 as a pharmacodynamic biomarker in geographic atrophy
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Amos Baruch, Kenneth J. Katschke, Victoria Pham, Shadi Toghi Eshghi, Phillip Lai, Andrew Ah Young, Wei-Ching Liang, Jennie R. Lill, Chingwei V. Lee, Wei Li, Menno Van Lookeren Campagne, Johnny Gutierrez, Daniel Kirchhofer, Isabel Figueroa, Scott J. Snipas, Guy S. Salvesen, Irene Tom, Lee Honigberg, and Jitendra Kanodia
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Male ,0301 basic medicine ,Medical Sciences ,Genotype ,Proteome ,genetic structures ,medicine.medical_treatment ,Proteomics ,Polymorphism, Single Nucleotide ,Retina ,Small Molecule Libraries ,Immunoglobulin Fab Fragments ,Macular Degeneration ,03 medical and health sciences ,proteomics ,0302 clinical medicine ,In vivo ,Geographic Atrophy ,Animals ,Humans ,Medicine ,Genetic Predisposition to Disease ,Adaptor Proteins, Signal Transducing ,Aged ,age-related macular degeneration (AMD) ,Multidisciplinary ,Protease ,biology ,Proteomic Profiling ,business.industry ,Serine hydrolase ,High-Temperature Requirement A Serine Peptidase 1 ,Biological Sciences ,eye diseases ,Antibodies, Anti-Idiotypic ,Rats ,030104 developmental biology ,HTRA1 ,Disease Progression ,030221 ophthalmology & optometry ,biology.protein ,Cancer research ,biomarker ,Biomarker (medicine) ,Female ,sense organs ,Antibody ,business ,Biomarkers - Abstract
Significance Genome-wide association studies have identified genetic variation at the ARMS2/HTRA1 locus as a risk factor for the development and progression of age-related macular degeneration (AMD). We have developed a potent anti-HtrA1 Fab inhibitor of HtrA1 proteolytic activity in the retina as a potential therapeutic for treating AMD. A set of proteomic analytical tools was established to characterize HtrA1 activity and discover in vivo HtrA1 substrates. These efforts led to the identification of an eye-specific and clinically applicable pharmacodynamic biomarker of anti-HtrA1 Fab activity. Analysis of HtrA1-mediated cleavage of Dickkopf-related protein 3 in the aqueous humor of patients with geographic atrophy provided evidence of anti-HtrA1 Fab activity and information on duration of activity in a phase 1 study., Genetic polymorphisms in the region of the trimeric serine hydrolase high-temperature requirement 1 (HTRA1) are associated with increased risk of age-related macular degeneration (AMD) and disease progression, but the precise biological function of HtrA1 in the eye and its contribution to disease etiologies remain undefined. In this study, we have developed an HtrA1-blocking Fab fragment to test the therapeutic hypothesis that HtrA1 protease activity is involved in the progression of AMD. Next, we generated an activity-based small-molecule probe (ABP) to track target engagement in vivo. In addition, we used N-terminomic proteomic profiling in preclinical models to elucidate the in vivo repertoire of HtrA1-specific substrates, and identified substrates that can serve as robust pharmacodynamic biomarkers of HtrA1 activity. One of these HtrA1 substrates, Dickkopf-related protein 3 (DKK3), was successfully used as a biomarker to demonstrate the inhibition of HtrA1 activity in patients with AMD who were treated with the HtrA1-blocking Fab fragment. This pharmacodynamic biomarker provides important information on HtrA1 activity and pharmacological inhibition within the ocular compartment.
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- 2020
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8. Contributors
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Rick Adler, Famke Aeffner, Laura E. Armstrong, Dmitri Artemov, Adam D. Aulbach, Bindu M. Bennet, Eric A. Blomme, Brad Bolon, Christopher J. Bowman, Molly Boyle, Alys Bradley, Dino Bradley, Danielle Brown, Pierre R. Bushel, Ellen Cannady, Mark F. Cesta, Curtis Chan, Jennifer A. Chilton, Peter J.M. Clements, Torrie A. Crabbs, Myrtle A. Davis, Sandy Eldridge, Daniela Ennulat, Jeffrey Everitt, Isabel Figueroa, James D. Fikes, Thomas Forest, Catherine A. Foss, John R. Foster, Kathleen Gabrielson, Shayne C. Gad, Kapil Gadkar, Jinping Gan, David Garcia-Tapia, Frank J. Geoly, Wendy G. Halpern, Jerry F. Hardisty, Wanda M. Haschek, Kathleen Marie Heinz-Taheny, Kristi Helke, Lauren E. Himmel, Mark J. Hoenerhoff, Jennifer L. Ingram–Ross, Armando R. Irizarry Rovira, Evan B. Janovitz, Kishore Katyayan, Charlotte M. Keenan, Angela King-Herbert, Steven T. Laing, Lois D. Lehman-McKeeman, Na Li, Calvert Louden, Claire Lyons, Kevin McDorman, Elizabeth McInnes, Lyn Miller Wancket, Sheroy Minocherhomji, Sébastien Monette, James Morrison, Vasanthi Mowat, Sydney Mukaratirwa, Keith Nelson, Arun R. Pandiri, Tracey Papenfuss, Nita Patel, Daniel J. Patrick, Shari A. Price, Deepa B. Rao, James T. Raymond, Jennifer Rojko, Colin G. Rousseaux, Sara F. Santagostino, Aaron Sargeant, Christina Satterwhite, A. Eric Schultze, Vanessa Schumacher, Cheryl Scudamore, Keith R. Shockley, Bhanu P. Singh, David M. Stresser, Polina Sysa-Shah, Debra A. Tokarz, Terry Van Vleet, Matthew A. Wallig, Jin Wang, Cynthia J. Willson, Kristin Lewis Wilson, Christopher T. Winkelmann, Jeffrey C. Wolf, Charles Wood, Daniela Bumbaca Yadav, and Mark Zarella
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- 2022
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9. T-Cell Based Therapies: Clinical Applications and Challenges
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Isabel Figueroa, Anika Gupta, and Asin Peighambari
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- 2022
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10. Biotherapeutics ADME and PK/PD Principles
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Kapil Gadkar, Isabel Figueroa, and Daniela Bumbaca Yadav
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Chemistry ,Pharmacology ,PK/PD models ,ADME - Published
- 2022
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11. The intricacies of dinoflagellate pellicle cysts: The example of Alexandrium minutum cysts from a bloom-recurrent area (Bay of Baiona, NW Spain)
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Bravo, Isabel, Isabel Figueroa, Rosa, Garcés, Esther, Fraga, Santiago, and Massanet, Ana
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- 2010
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12. Bloom dynamics and life cycle strategies of two toxic dinoflagellates in a coastal upwelling system (NW Iberian Peninsula)
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Bravo, Isabel, Fraga, Santiago, Isabel Figueroa, Rosa, Pazos, Yolanda, Massanet, Ana, and Ramilo, Isabel
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- 2010
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13. Latitudinal Variation in the Toxicity and Sexual Compatibility of Alexandrium catenella Strains From Southern Chile
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Daniel Varela, Pilar Riobó, Araceli E. Rossignoli, Patricio A. Díaz, Francisco Rodríguez, Alondra Sandoval, Patricia Loures, Camilo Rodríguez-Villegas, Rosa Isabel Figueroa, and Ángela Baldrich
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Alexandrium catenella ,Variation (linguistics) ,biology ,Toxicity ,Dinoflagellate ,Compatibility (geochemistry) ,Zoology ,biology.organism_classification ,Mating system - Abstract
The bloom-forming toxic dinoflagellate Alexandrium catenella was first detected in Southern Chile (39.5–55°S) 50 years ago and is responsible for most of the area’s cases of paralytic shellfish poisoning (PSP). Given the complex life history of A. catenella, which includes benthic sexual cysts, in this study we examined the potential link between latitude, toxicity, and sexual compatibility. Nine clones isolated from Chilean Patagonia were used in self- and out-crosses in all possible combinations (n=45). The effect of latitude on toxicity, reproductive success indexes, and cyst production was also determined. Although the toxin profiles were similar for all strains, consisting of C1, C2, GTX4, GTX1, GTX3, and NeoSTX, a latitudinal gradient was determined for their proportions (%) and content per cell (pg cell−1), with the more toxic strains occurring in the north (−40.6°S). Reproductive success also showed a latitudinal tendency and was lower in the north. None of the self-crosses yielded resting cysts. Rather, the production of resting cysts was highest in pairings of clones separated by distances of 1000–1650km. Our results contribute to a better understanding of PSP outbreaks in the region and demonstrate the importance of resting cysts in fueling new toxic events. They also provide additional evidence that the introduction of strains from neighboring regions is a cause for concern.
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- 2021
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14. Direct evidende of sex and a hypothesis about meiosis in Symbiodiniaceae
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Adrienne M. S. Correa, Rosa Isabel Figueroa, and Lauren I. Howe-Kerr
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marine invertebrates ,Coral bleaching ,Zygote ,Science ,lines ,Mitosis ,Biology ,Genetic recombination ,Meiosis ,Symbiodiniaceae ,Centro Oceanográfico de Vigo ,medicine ,Symbioses ,Medio Marino ,symbionts ,Recombination, Genetic ,Multidisciplinary ,Microscopy, Confocal ,Coral Reefs ,Meiosis II ,Reproduction ,fungi ,DNA ,genetic diversity ,bleaching ,biochemical phenomena, metabolism, and nutrition ,Flow Cytometry ,Dinoflagellates ,Nuclear DNA ,medicine.anatomical_structure ,Evolutionary biology ,Corals ,Dinoflagellida ,Gamete ,Medicine ,Sex ,Ploidy - Abstract
Dinoflagellates in the family Symbiodiniaceae are obligate endosymbionts of diverse marine invertebrates, including corals, and impact the capacity of their hosts to respond to climate change-driven ocean warming. Understanding the conditions under which increased genetic variation in Symbiodiniaceae arises via sexual recombination can support efforts to evolve thermal tolerance in these symbionts and ultimately mitigate coral bleaching, the breakdown of the coral-Symbiodiniaceae partnership under stress. However, direct observations of meiosis in Symbiodiniaceae have not been reported, despite various lines of indirect evidence that it occurs. We present the first cytological evidence of sex in Symbiodiniaceae based on nuclear DNA content and morphology using Image Flow Cytometry, Cell Sorting and Confocal Microscopy. We show the Symbiodiniaceae species, Cladocopium latusorum, undergoes gamete conjugation, zygote formation, and meiosis within a dominant reef-building coral in situ. On average, sex was detected in 1.5% of the cells analyzed (N = 10,000–40,000 cells observed per sample in a total of 20 samples obtained from 3 Pocillopora colonies). We hypothesize that meiosis follows a two-step process described in other dinoflagellates, in which diploid zygotes form dyads during meiosis I, and triads and tetrads as final products of meiosis II. This study sets the stage for investigating environmental triggers of Symbiodiniaceae sexuality and can accelerate the assisted evolution of a key coral symbiont in order to combat reef degradation., DIANAS, DETECCIÓN INNOVADORA DE PROLIFERACIONES ALGALES TÓXICAS: UNA NECESIDAD FRENTE AL CALENTAMIENTO GLOBAL
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- 2021
15. Impacts of harmful algal blooms on the aquaculture industry: Chile as a case study
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Alejandra Aguilera-Belmonte, Manuel Díaz, Daniel Varela, José Rengel, Patricio A. Díaz, Gonzalo Alvarez, Cristina Hernández, Iván Pérez-Santos, Rosa Isabel Figueroa, Leonardo Guzmán, Miriam Seguel, Cristian Segura, Eduardo Uribe, and Carlos Molinet
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Fishery ,Socio-economic impacts ,Shellfish aquaculture ,Aquaculture industry ,Chile ,Biology ,ASP outbreaks ,Algal bloom ,HAB-causing species ,PSP outbreaks ,DSP outbreaks - Abstract
Harmful algal blooms (HABs) of toxin-producing microalgae, mainly Alexandrium catenella, Dinophysis spp., and Pseudonitzschia australis, cause the severe illnesses referred to as paralytic, diarrheic, and amnesic shellfish poisoning. They therefore threaten the sustainable exploitation of bivalves, including in northern and southern Chile, sites of intensive shellfish aquaculture but also recurrent HABs. Exceptionally large blooms of the genera Pseudochattonella and Karenia recently occurred in the Patagonian fjords, leading to high fish mortalities (up to 40 000 t) and thus to very negative impacts on the salmon farming industry. The resulting economic losses were estimated to be US$800M. Here we examine past, present, and possible future trends of the main HAB-causative species in Chile, with the objective of improving risk assessments of shellfish poisoning and other hazardous events in the region and elsewhere
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- 2019
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16. Aprovechamiento del estiércol de alpaca e ichu para la producción de briquetas como fuente de energía calorífica en Arequipa
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Danae Colque Ollachica, Isabel Figueroa Ccanahuire, Luz Chaupi Quispe, Juan Palo Tejada, Alicia Puma Taco, and Enriqueta Campos Falcon
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General Engineering ,General Earth and Planetary Sciences ,General Environmental Science - Abstract
En este trabajo se realizaron pruebas para determinar el poder calorífico de briquetas de estiércol de alpaca e ichu y aglomerante; la proporción de la mezcla está en 80 % de estiércol de alpaca, 18% de ichu, 2% de cal y agua en medida proporcional al estiércol. Los resultados muestran la temperatura máxima que alcanza la briqueta en estudio es 500 °C medido con un termómetro infrarrojo y poder calorífico estimado para estas briquetas 4318,18 cal/g. Por los resultados obtenidos las briquetas resultantes se pueden utilizar como combustible alternativo y económico y además amigable con el medio ambiente. El estiércol de alpaca a 4000 m.s.n.m no se utiliza como abono para la agricultura en la población deSan Antonio de Chuca-Imata.
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- 2021
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17. Direct Evidence Of Sex In Symbiodiniaceae And A Hypothesis About Meiosis
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Rosa Isabel Figueroa, Lauren I. Howe-Kerr, and Adrienne M. S. Correa
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Meiosis ,Direct evidence ,Evolutionary biology ,fungi ,Symbiodiniaceae ,biochemical phenomena, metabolism, and nutrition ,Biology - Abstract
Dinoflagellates in the family Symbiodiniaceae are obligate endosymbionts of diverse marine invertebrates, including corals, and impact the capacity of their hosts to respond to climate change-driven ocean warming. Understanding the conditions under which increased genetic variation in Symbiodiniaceae arises via sexual recombination can support efforts to evolve thermal tolerance in these symbionts and ultimately mitigate coral bleaching, the breakdown of the coral-Symbiodiniaceae partnership under stress. However, direct observations of meiosis in Symbiodiniaceae have not been reported, despite various lines of indirect evidence that it occurs. We present the first cytological evidence of sex in Symbiodiniaceae based on nuclear DNA content and morphology using Image Flow Cytometry, Cell Sorting and Confocal Microscopy. We show Symbiodiniaceae cells undergo gamete conjugation, zygote formation and meiosis within a dominant reef-building coral in situ. On average, sex was detected in 1.5% of the cells analyzed (N=10.000-40.000 cells observed per sample in a total of 20 samples obtained from 3 coral colonies). We show that meiosis follows a two-step process described in other dinoflagellates, in which diploid zygotes form dyads during meiosis I and triads and tetrads as final products of meiosis II. This study sets the stage for investigating environmental triggers of Symbiodiniaceae sexuality and can accelerate the assisted evolution of a key coral symbiont in order to combat reef degradation.
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- 2021
- Full Text
- View/download PDF
18. The 5S rRNA genes in Alexandrium: their use as a FISH chromosomal marker in studies of the diversity, cell cycle and sexuality of dinoflagellates
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Alfredo de Bustos, Isabel Bravo, Marta Sixto, Rosa Isabel Figueroa, and Angeles Cuadrado
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0106 biological sciences ,Life cycle ,Alexandrium ,Plant Science ,010501 environmental sciences ,Aquatic Science ,Biology ,01 natural sciences ,Genome ,Chromosomes ,Evolution, Molecular ,5S ribosomal RNA ,FISH ,Centro Oceanográfico de Vigo ,medicine ,Coding region ,Medio Marino ,Gene ,Ribosomal DNA ,In Situ Hybridization, Fluorescence ,0105 earth and related environmental sciences ,Planozygotes ,Genetics ,medicine.diagnostic_test ,010604 marine biology & hydrobiology ,Cell Cycle ,RNA, Ribosomal, 5S ,5S rDNA ,Genes, rRNA ,Nucleolar Organizer Region ,Dinoflagellida ,Ploidy ,Dinomitosis ,Fluorescence in situ hybridization - Abstract
Chromosomal markers of the diversity and evolution of dinoflagellates are scarce because the genomes of these organisms are unique among eukaryotes in terms of their base composition and chromosomal structure. Similarly, a lack of appropriate tools has hindered studies of the chromosomal localization of 5S ribosomal DNA (rDNA) in the nucleosome-less chromosomes of dinoflagellates. In this study, we isolated and cloned 5S rDNA sequences from various toxin-producing species of the genus Alexandrium and developed a fluorescence in situ hybridization (FISH) probe that allows their chromosomal localization. Our results can be summarized as follows: 1) The 5S rDNA unit is composed of a highly conserved 122-bp coding region and an intergenic spacer (IGS), the length and sequence of which are variable even within strains. 2) Three different IGS types, one containing the U6 small nuclear RNA (snRNA) gene, were found among four of the studied species (A. minutum, A. tamarense, A. catenella and A. pacificum). 3) In all strains investigated by FISH (A. minutum, A. tamarense, A. pacificum, A. catenella, A. andersonii and A. ostenfeldii), 5S rDNA gene arrays were separate from the nucleolar organizer region, which contains the genes for the large 45S pre-ribosomal RNA. 4) One to three 5S rDNA sites per haploid genome were detected, depending on the strains/species. Intraspecific variability in the number of 5S rDNA sites was determined among strains of A. minutum and A. pacificum. 5) 5S rDNA is a useful chromosomal marker of mitosis progression and can be employed to differentiate vegetative (haploid) vs. planozygotes (diploid) cells. Thus, the FISH probe (oligo-Dino5Smix5) developed in this study facilitates analyses of the diversity, cell cycle and life stages of the genus Alexandrium., DIANAS, DETECCIÓN INNOVADORA DE PROLIFERACIONES ALGALES TÓXICAS: UNA NECESIDAD FRENTE AL CALENTAMIENTO GLOBAL, SI
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- 2020
19. Morphological and phylogenetic data do not support the split of Alexandrium into four genera
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Kenneth Neil Mertens, António J. Calado, Anke Kremp, Santiago Fraga, Raffaele Siano, Albert Reñé, Takeo Horiguchi, Po Teen Lim, Shauna A. Murray, Michael L. Brosnahan, Yoshihito Takano, Isabel Bravo, Marina Montresor, Lincoln MacKenzie, Aika Yamaguchi, Cecilia Teodora Satta, Nagore Sampedro, Masao Adachi, Esther Garcés, Nicolas Chomérat, Philipp Hess, Uwe John, Kazumi Matsuoka, Estelle Masseret, Hyeon Ho Shin, Kirsty F. Smith, Jacob Larsen, Mona Hoppenrath, Haifeng Gu, Wayne Litaker, Christopher J. S. Bolch, Ismael Gárate-Lizárraga, Tatiana Yu. Orlova, Karen A. Steidinger, Mitsunori Iwataki, Gustaaf M. Hallegraeff, Malte Elbrächter, Tomohiro Nishimura, Elisabeth Nézan, Donald M. Anderson, M. Consuelo Carbonell-Moore, Christine J. Band-Schmidt, Rosa Isabel Figueroa, Satoshi Nagai, Zhun Li, Yuri B. Okolodkov, Urban Tillmann, Chui Pin Leaw, Øjvind Moestrup, Jennifer L. Wolny, National Oceanic and Atmospheric Administration (US), Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), Station de Biologie Marine de Concarneau, Direction générale déléguée à la Recherche, à l’Expertise, à la Valorisation et à l’Enseignement-Formation (DGD.REVE), Muséum national d'Histoire naturelle (MNHN)-Muséum national d'Histoire naturelle (MNHN), Institute for Marine and Antarctic Studies [Horbat] (IMAS), University of Tasmania [Hobart, Australia] (UTAS), German Centre for Marine Biodiversity Research [Wilhelmshaven, Allemagne] (DZMB), Senckenberg am Meer, The University of Tokyo (UTokyo), Alfred-Wegener-Institut, Helmholtz-Zentrum für Polar- und Meeresforschung (AWI), Finnish Environment Institute (SYKE), MARine Biodiversity Exploitation and Conservation (UMR MARBEC), Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Institut de Recherche pour le Développement (IRD), Dynamiques de l'Environnement Côtier (DYNECO), Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER), Kochi University, Plant Functional Biology and Climate Change Cluster (C3), University of Technology Sydney (UTS), Institute for Marine and Antarctic Studies [Hobart] (IMAS), Institut de Recherche pour le Développement (IRD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS), Laboratoire d'Ecologie Pélagique (PELAGOS), Dynamiques des Écosystèmes Côtiers (DYNECO), and Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)
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0106 biological sciences ,Paraphyly ,Autapomorphy ,Medio Marino y Protección Ambiental ,[SDE.MCG]Environmental Sciences/Global Changes ,Plant Science ,010501 environmental sciences ,Aquatic Science ,Biology ,01 natural sciences ,Monophyly ,Genus ,Polyphyly ,Centro Oceanográfico de Vigo ,Paraphyletic ,Harmful algal blooms ,Phylogeny ,0105 earth and related environmental sciences ,Taxonomy ,010604 marine biology & hydrobiology ,Marine Biology & Hydrobiology ,3. Good health ,Phylogenetics ,Taxon ,Evolutionary biology ,05 Environmental Sciences, 06 Biological Sciences ,Molecular phylogenetics ,Dinoflagellida ,Taxonomy (biology) ,[SDE.BE]Environmental Sciences/Biodiversity and Ecology ,Saxitoxin ,Spirolides - Abstract
8 pages, 2 tables, A recently published study analyzed the phylogenetic relationship between the genera Centrodinium and Alexandrium, confirming an earlier publication showing the genus Alexandrium as paraphyletic. This most recent manuscript retained the genus Alexandrium, introduced a new genus Episemicolon, resurrected two genera, Gessnerium and Protogonyaulax, and stated that: “The polyphyly [sic] of Alexandrium is solved with the split into four genera”. However, these reintroduced taxa were not based on monophyletic groups. Therefore this work, if accepted, would result in replacing a single paraphyletic taxon with several non-monophyletic ones. The morphological data presented for genus characterization also do not convincingly support taxa delimitations. The combination of weak molecular phylogenetics and the lack of diagnostic traits (i.e., autapomorphies) render the applicability of the concept of limited use. The proposal to split the genus Alexandrium on the basis of our current knowledge is rejected herein. The aim here is not to present an alternative analysis and revision, but to maintain Alexandrium. A better constructed and more phylogenetically accurate revision can and should wait until more complete evidence becomes available and there is a strong reason to revise the genus Alexandrium. The reasons are explained in detail by a review of the available molecular and morphological data for species of the genera Alexandrium and Centrodinium. In addition, cyst morphology and chemotaxonomy are discussed, and the need for integrative taxonomy is highlighted, Support to DMA from the NOAA ECOHAB program (Grant #NA15NOS4780181) is gratefully acknowledged. Support to EG, AR, NS from the COPAs project (CTM2017-86121-R) is acknowledged. IGL and CJBS are COFFA-IPN and EDI-IPN fellows, With the funding support of the ‘Severo Ochoa Centre of Excellence’ accreditation (CEX2019-000928-S), of the Spanish Research Agency (AEI)
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- 2020
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20. Anti-Lymphocyte Antigen 6 Complex, Locus E
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Victor, Yip, Isabel, Figueroa, Brandon, Latifi, Shab, Masih, Carl, Ng, Doug, Leipold, Amrita, Kamath, and Ben-Quan, Shen
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Immunoconjugates ,Metabolic Clearance Rate ,GPI-Linked Proteins ,Xenograft Model Antitumor Assays ,Rats ,Macaca fascicularis ,Mice ,Antineoplastic Agents, Immunological ,Cell Line, Tumor ,Neoplasms ,Alpha-Globulins ,Antigens, Surface ,Animals ,Humans ,Female ,Tissue Distribution - Abstract
Anti-Ly6E
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- 2020
21. Site-specific conjugation allows modulation of click reaction stoichiometry for pretargeted SPECT imaging
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Gabriel Fung, Shang-Fan Yu, Cynthia McCaughey, Jason Ho, Lidia A. Nazarova, Saileta Prabhu, Hanine Rafidi, Danielle Mandikian, Priya Venkatraman, C. Andrew Boswell, Pragya Adhikari, Gregory Z. Ferl, Sheila Ulufatu, Isabel Figueroa, Jeffrey Lau, and Jack Sadowsky
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Immunoconjugates ,Receptor, ErbB-2 ,medicine.drug_class ,medicine.medical_treatment ,pretargeted imaging ,Immunology ,010402 general chemistry ,Monoclonal antibody ,01 natural sciences ,Chemical kinetics ,Heterocyclic Compounds, 1-Ring ,Mice ,03 medical and health sciences ,Tetrazine ,chemistry.chemical_compound ,0302 clinical medicine ,Report ,Cell Line, Tumor ,Neoplasms ,Spect imaging ,medicine ,Animals ,Humans ,Immunology and Allergy ,Tissue Distribution ,Pretargeting ,Tomography, Emission-Computed, Single-Photon ,iEDDA reaction ,site-specific bioconjugation ,Antibodies, Monoclonal ,Radioimmunotherapy ,Xenograft Model Antitumor Assays ,0104 chemical sciences ,biorthogonal click chemistry ,chemistry ,SPECT ,Isotope Labeling ,030220 oncology & carcinogenesis ,Biophysics ,Click chemistry ,tetrazine ,Click Chemistry ,Molecular imaging - Abstract
Antibody pretargeting is a promising strategy for improving molecular imaging, wherein the separation in time of antibody targeting and radiolabeling can lead to rapid attainment of high contrast, potentially increased sensitivity, and reduced patient radiation exposure. The inverse electron demand Diels-Alder ‘click’ reaction between trans-cyclooctene (TCO) conjugated antibodies and radiolabeled tetrazines presents an ideal platform for pretargeted imaging due to rapid reaction kinetics, bioorthogonality, and potential for optimization of both slow and fast clearing components. Herein, we evaluated a series of anti-human epidermal growth factor receptor 2 (HER2) pretargeting antibodies containing distinct molar ratios of site-specifically incorporated TCO. The effect of stoichiometry on tissue distribution was assessed for pretargeting TCO-modified antibodies (monitored by 125I) and subsequent accumulation of an 111In-labeled tetrazine in a therapeutically relevant HER2+tumor-bearing mouse model. Single photon emission computed tomography (SPECT) imaging was also employed to assess tumor imaging at various TCO-to-monoclonal antibody (mAb) ratios. Increasing TCO-to-mAb molar ratios correlated with increased in vivo click reaction efficiency evident by increased tumor distribution and systemic exposure of 111In-labeled tetrazines. The pharmacokinetics of TCO-modified antibodies did not vary with stoichiometry. Pretargeted SPECT imaging of HER2-expressing tumors using 111In-labeled tetrazine demonstrated robust click reaction with circulating antibody at ~2 hours and good tumor delineation for both the 2 and 6 TCO-to-mAb ratio variants at 24 hours, consistent with a limited cell-surface pool of pretargeted antibody and benefit from further distribution and internalization. To our knowledge, this represents the first reported systematic analysis of how pretargeted imaging is affected solely by variation in click reaction stoichiometry through site-specific conjugation chemistry.
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- 2018
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22. Preclinical pharmacokinetics and pharmacodynamics of DCLL9718A: An antibody-drug conjugate for the treatment of acute myeloid leukemia
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Melissa Schutten, Brandon Latifi, Ola Saad, Steven T Laing, Shabkhaiz Masih, Jintang He, Isabel Figueroa, Katherine R. Kozak, Douglas D. Leipold, Randall C. Dere, M. Violet Lee, Brian R. Vuillemenot, Andrew Polson, Keyang Xu, Ben-Quan Shen, Montserrat Carrasco-Triguero, Luna Liu, Dian Su, Victor Yip, Bing Zheng, and Amrita V. Kamath
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0301 basic medicine ,Antibody-drug conjugate ,Immunoconjugates ,Metabolic Clearance Rate ,Immunology ,acute myeloid leukemia ,Pharmacology ,Benzodiazepines ,Mice ,03 medical and health sciences ,Species Specificity ,Pharmacokinetics ,Report ,hemic and lymphatic diseases ,Preclinical pharmacokinetics ,Animals ,Humans ,Immunology and Allergy ,Medicine ,receptor occupancy ,Lectins, C-Type ,Pyrroles ,Receptor ,neoplasms ,business.industry ,PBD dimer ,Antibodies, Monoclonal ,Treatment options ,Myeloid leukemia ,Rats ,Macaca fascicularis ,030104 developmental biology ,Leukemia, Myeloid ,Area Under Curve ,Immunoglobulin G ,Receptors, Mitogen ,Pharmacodynamics ,Acute Disease ,CLL-1 ,business ,pharmacokinetics ,Conjugate - Abstract
Few treatment options are available for acute myeloid leukemia (AML) patients. DCLL9718A is an antibody-drug conjugate that targets C-type lectin-like molecule-1 (CLL-1). This receptor is prevalent on monocytes, neutrophils, and AML blast cells, and unlike CD33, is not expressed on hematopoietic stem cells, thus providing possible hematopoietic recovery. DCLL9718A comprises an anti-CLL-1 IgG1 antibody (MCLL0517A) linked to a pyrrolobenzodiazepine (PBD) dimer payload, via a cleavable disulfide-labile linker. Here, we characterize the in vitro and in vivo stability, the pharmacokinetics (PK) and pharmacodynamics (PD) of DCLL9718A and MCLL0517A in rodents and cynomolgus monkeys. Three key PK analytes were measured in these studies: total antibody, antibody-conjugated PBD dimer and unconjugated PBD dimer. In vitro, DCLL9718A, was stable with most (> 80%) of the PBD dimer payload remaining conjugated to the antibody over 96 hours. This was recapitulated in vivo with antibody-conjugated PBD dimer clearance estimates similar to DCLL9718A total antibody clearance. Both DCLL9718A and MCLL0517A showed linear PK in the non-binding rodent species, and non-linear PK in cynomolgus monkeys, a binding species. The PK data indicated minimal impact of conjugation on the disposition of DCLL9718A total antibody. Finally, in cynomolgus monkey, MCLL0517A showed target engagement at all doses tested (0.5 and 20 mg/kg) as measured by receptor occupancy, and DCLL9718A (at doses of 0.05, 0.1 and 0.2 mg/kg) showed strong PD activity as evidenced by notable reduction in monocytes and neutrophils.
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- 2018
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23. Exploration of Pyrrolobenzodiazepine (PBD)-Dimers Containing Disulfide-Based Prodrugs as Payloads for Antibody–Drug Conjugates
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Peter S. Dragovich, Sheila Ulufatu, John S. Wai, James Lee, Reginald Delarosa, Carl Ng, Zijin Xu, Chunjiao Chen, Shang-Fan Yu, S. Cyrus Khojasteh, Gail Lewis Phillips, Rebecca K. Rowntree, Keyang Xu, Aimee Fourie-O'Donohue, Zhonghua Pei, Isabel Figueroa, Liling Liu, Josefa dela Cruz-Chuh, Jiawei Lu, Jun Guo, Weiwei Jin, Jing Wang, Jinhua Chen, Eva Lin, Nicola J. Stagg, David Stokoe, Scott E. Martin, Trung Nguyen, Donglu Zhang, Hui Yao, Guangmin Li, Rachana Ohri, Thomas H. Pillow, Katherine R. Kozak, Brandon Latifi, Yuzhong Deng, and Vishal Verma
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0301 basic medicine ,Antibody-drug conjugate ,Immunoconjugates ,Stereochemistry ,Pharmaceutical Science ,Pyrrolobenzodiazepine ,Cleavage (embryo) ,Benzodiazepines ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Cell Line, Tumor ,Drug Discovery ,Humans ,Prodrugs ,Pyrroles ,Cysteine ,Disulfides ,Molecular Structure ,Chemistry ,Glutathione ,Prodrug ,In vitro ,030104 developmental biology ,030220 oncology & carcinogenesis ,Molecular Medicine ,Conjugate - Abstract
A number of cytotoxic pyrrolobenzodiazepine (PBD) monomers containing various disulfide-based prodrugs were evaluated for their ability to undergo activation (disulfide cleavage) in vitro in the presence of either glutathione (GSH) or cysteine (Cys). A good correlation was observed between in vitro GSH stability and in vitro cytotoxicity toward tumor cell lines. The prodrug-containing compounds were typically more potent against cells with relatively high intracellular GSH levels (e.g., KPL-4 cells). Several antibody-drug conjugates (ADCs) were subsequently constructed from PBD dimers that incorporated selected disulfide-based prodrugs. Such HER2 conjugates exhibited potent antiproliferation activity against KPL-4 cells in vitro in an antigen-dependent manner. However, the disulfide prodrugs contained in the majority of such entities were surprisingly unstable toward whole blood from various species. One HER2-targeting conjugate that contained a thiophenol-derived disulfide prodrug was an exception to this stability trend. It exhibited potent activity in a KPL-4 in vivo efficacy model that was approximately three-fold weaker than that displayed by the corresponding parent ADC. The same prodrug-containing conjugate demonstrated a three-fold improvement in mouse tolerability properties in vivo relative to the parent ADC, which did not contain the prodrug.
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- 2018
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24. Species diversity and abundance of dinoflagellate resting cysts seven months after a bloom of Alexandrium catenella in two contrasting coastal systems of the Chilean Inland Sea
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Rosa Isabel Figueroa, Patricio A. Díaz, Manuel Díaz, Miriam Seguel, Carlos Molinet, and Gissela Labra
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0106 biological sciences ,Alexandrium catenella ,biology ,Ecology ,010604 marine biology & hydrobiology ,Fish farming ,fungi ,Dinoflagellate ,Species diversity ,Plant Science ,Aquatic Science ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Algal bloom ,parasitic diseases ,Phytoplankton ,Bloom ,Shellfish - Abstract
In Chile, 90% of the fish farms and major natural shellfish beds are located in the region surrounding the Inland Sea, where over the last few decades harmful phytoplankton blooms have often been observed. The onset and recurrence of bloom events are often related to the resuspension and germination of resting cysts that have accumulated in the sediments. The degree of cyst settling, accumulation and germination is highly variable between areas and depends on physical and environmental factors. To learn how differences in oceanographic exposure, amount of river runoff and bathymetry affect dinoflagellate cyst deposition, we examined the diversity and abundance of dinoflagellate resting cysts from two hydrographically contrasting coastal areas (oceanic Guaitecas Archipelago and estuarine Pitipalena Fjord) of the Chilean Inland Sea in September 2006, seven months after a bloom of Alexandrium catenella, a producer of paralytic shellfish toxin. Cyst species diversity consisted of 18 taxa, including A. catenella and the noxious species Protoceratium reticulatum, both of which have caused blooms in the study area. Our results revealed significant differences between the two study sites in terms of the abundance and diversity of resting cysts, suggesting that in the specific case of A. catenella, only Guaitecas stations have potential for cyst accumulation and successful growth of cells. However, there was no evidence of long-term resting cyst beds of A. catenella at either study site.
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- 2018
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25. Prediction of non-linear pharmacokinetics in humans of an antibody-drug conjugate (ADC) when evaluation of higher doses in animals is limited by tolerability: Case study with an anti-CD33 ADC
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Melissa Schutten, Keyang Xu, Bing Zheng, Aimee Fourie-O'Donohue, Hong Wang, Katherine R. Kozak, Steve R. Leong, Amrita V. Kamath, Andrew Polson, Isabel Figueroa, Montserrat Triguero-Carrasco, and Doug Leipold
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Antibody-drug conjugate ,Immunoconjugates ,Sialic Acid Binding Ig-like Lectin 3 ,Immunology ,CD33 ,Pharmacology ,Models, Biological ,030226 pharmacology & pharmacy ,03 medical and health sciences ,0302 clinical medicine ,Species Specificity ,Pharmacokinetics ,Cell Line, Tumor ,Animals ,Humans ,Immunology and Allergy ,Prospective Studies ,Receptor ,biology ,Chemistry ,Antibodies, Monoclonal ,Pre-clinical development ,Macaca fascicularis ,HEK293 Cells ,Tolerability ,030220 oncology & carcinogenesis ,biology.protein ,Antibody ,Algorithms ,Conjugate - Abstract
For antibody-drug conjugates (ADCs) that carry a cytotoxic drug, doses that can be administered in preclinical studies are typically limited by tolerability, leading to a narrow dose range that can be tested. For molecules with non-linear pharmacokinetics (PK), this limited dose range may be insufficient to fully characterize the PK of the ADC and limits translation to humans. Mathematical PK models are frequently used for molecule selection during preclinical drug development and for translational predictions to guide clinical study design. Here, we present a practical approach that uses limited PK and receptor occupancy (RO) data of the corresponding unconjugated antibody to predict ADC PK when conjugation does not alter the non-specific clearance or the antibody-target interaction. We used a 2-compartment model incorporating non-specific and specific (target mediated) clearances, where the latter is a function of RO, to describe the PK of anti-CD33 ADC with dose-limiting neutropenia in cynomolgus monkeys. We tested our model by comparing PK predictions based on the unconjugated antibody to observed ADC PK data that was not utilized for model development. Prospective prediction of human PK was performed by incorporating in vitro binding affinity differences between species for varying levels of CD33 target expression. Additionally, this approach was used to predict human PK of other previously tested anti-CD33 molecules with published clinical data. The findings showed that, for a cytotoxic ADC with non-linear PK and limited preclinical PK data, incorporating RO in the PK model and using data from the corresponding unconjugated antibody at higher doses allowed the identification of parameters to characterize monkey PK and enabled human PK predictions.
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- 2018
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26. Temperature-dependent growth and sexuality of the ciguatoxin producer dinoflagellate Gambierdiscus spp. in cultures established from the Canary Islands
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Isabel Ramilo, Angeles Cuadrado, Rosa Isabel Figueroa, Fernando Rayón-Viña, and Isabel Bravo
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Gambierdiscus ,Ciguatoxin ,Range (biology) ,Plant Science ,Subtropics ,Aquatic Science ,Intraspecific competition ,Ciguatoxins ,Centro Oceanográfico de Vigo ,Botany ,Animals ,Harmful algae ,Climate change ,Benthic dinoflagellates ,Medio Marino ,biology ,Temperature ,Dinoflagellate ,biology.organism_classification ,Sexual reproduction ,Spain ,Benthic zone ,Dinoflagellida ,Ciguatera poisoning ,Sexuality - Abstract
Benthic dinoflagellates of the genus Gambierdiscus produce ciguatoxins, compounds that when metabolized in fish and consumed by humans cause ciguatera poisoning (CP). This syndrome, which is widespread in tropical and subtropical regions, has recently been reported also in subtropical-temperate latitudes such as the Canary Islands where CP events have been regularly detected since 2004. This study examined the effect of temperature on the growth of Gambierdiscus isolated from Canary waters: G. australes, G. caribaeus, G. carolinianus, G. excentricus, and G. silvae. From the temperature vs. growth curves, the maximum growth (µm), optimum temperature range for growth (Topt), and the temperature yielding maximum growth (Tm) were estimated for each species. The results revealed temperature-dependent differences in the growth parameters. G. caribaeus had the highest Tm and Topt, followed by G. australes, G. carolinianus, G. silvae, and G excentricus. G. australes tolerated the widest range of temperatures (from 15 ◦C to 29 ◦C), which may explain its broader geographic distribution, both worldwide and across the Canary archipelago. Neither G. excentricus nor G. silvae survived at 29 ◦C whereas G. caribaeus reached mean growth rates (± standard deviation) up to 0.19 ± 0.01 div.day− 1 at that temperature, followed by G. australes (0.16 ± 0.01 div.day− 1) and G. carolinianus (0.14 ± 0.04 div.day− 1). G. caribaeus showed no measurable growth at 19◦C, whereas G. excentricus and G. silvae along with G. australes appeared as the species better adapted to lower temperatures. In an intraspecific variability study of 12 strains of G. australes, the mean (± standard deviation) of µm and Tm were 0.17 ± 0.01 div.day− 1 and 27.7 ± 0.5 ◦C, respectively. An analysis of the shapes and position of the cell nuclei at the different temperatures showed that nuclei characteristic of vegetative cells appeared mainly at 26 ◦C but extreme temperatures resulted in nuclei with a more variable morphology. The presence of putative zygotes at extreme temperatures (17 ◦C, 19 ◦C and 29 ◦C) suggests that sexual reproduction is promoted as an adaptive strategy which could play an important role in the expansion of geographic distribution of Gambierdiscus species., SI
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- 2021
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27. Drivers of dinoflagellate benthic cyst assemblages in the NW Patagonian Fjords System and its adjacent oceanic shelf, with a focus on harmful species
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Gonzalo Alvarez, Sandra L. Marín, Iván Pérez-Santos, Patricio A. Díaz, Stephen J. Tomasetti, Edwin J. Niklitschek, Matthew R. Lee, Camilo Rodríguez-Villegas, Rosa Isabel Figueroa, Laura Farías, Ángela Baldrich, Pablo Salgado, Miriam Seguel, and Manuel Díaz
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Environmental Engineering ,010504 meteorology & atmospheric sciences ,Range (biology) ,Fjord ,010501 environmental sciences ,01 natural sciences ,Algal bloom ,Aquaculture ,medicine ,Environmental Chemistry ,Paralytic shellfish poisoning ,Waste Management and Disposal ,0105 earth and related environmental sciences ,geography ,geography.geographical_feature_category ,biology ,business.industry ,Ecology ,Dinoflagellate ,Sediment ,biology.organism_classification ,medicine.disease ,Pollution ,Benthic zone ,Environmental science ,business - Abstract
In recent decades, the alteration of coastal food webs (via aquaculture, fishing, and leisure activities), nutrient loading, and an expansion of monitoring programs have prompted an apparent worldwide rise in Harmful Algae Blooms (HABs). Over this time, a parallel increase in HABs has also been observed in the Chilean southern austral region (Patagonia fjords). HAB species like Alexandrium catenella—responsible for Paralytic Shellfish Poisoning (PSP)—are of great public concern due to their negative socioeconomic impacts and significant northward geographical range expansion. Many toxic dinoflagellate species (like A. catenella) produce benthic resting cysts, yet a holistic understanding of the physical-chemical and biological conditions influencing the distributions of cysts in this region is lacking. In this study, we measured a combination of hydrographic (temperature, salinity, and dissolved oxygen) and sediment physical-chemical properties (temperature, pH and redox potential), in addition to meiofaunal abundances –as sediment bioturbators and potential cyst predators– to determine the factors influencing dinoflagellate cyst distribution, with emphasis on A. catenella in and around a “hotspot” area of southern Chile. An analysis of similarities (ANOSIM) test revealed significant differences (p
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- 2021
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28. A quantitative systems pharmacology consortium approach to managing immunogenicity of therapeutic proteins
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Andrea Ferrante, Lian Zhou, Marjoleen Nijsen, J. Cory Kalvass, Renu S Dhanikula, Gemma L. Dickinson, Piet H. van der Graaf, Isabel Figueroa, Kapil Gadkar, Andrzej M. Kierzek, Neil Benson, Akihiro Yamada, Michael Walker, Benjamin Ribba, Thierry Lavé, Sophie Tourdot, Jan-Stefan van der Walt, Abhishek Gulati, Hiroyuki Sayama, Jatin Narula, Valerie Quarmby, Vijayalakshmi Chelliah, Ben G Small, Xiaoying Chen, Rong Deng, Sachiko Yokoo, Maciej J. Swat, Craig J. Thalhauser, Krithika Mohan, Hannah M. Jones, Geertruida M. Veldman, Timothy P. Hickling, Jochem Gokemeijer, Mario Giorgi, and Tarek A. Leil
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Epitopes, T-Lymphocyte ,chemical and pharmacologic phenomena ,Computational biology ,Protein Engineering ,Models, Biological ,complex mixtures ,Patient care ,Drug Discovery ,Humans ,Medicine ,Pharmacology (medical) ,Potential impact ,Drug discovery ,business.industry ,Systems Biology ,Immunogenicity ,lcsh:RM1-950 ,Proteins ,lcsh:Therapeutics. Pharmacology ,Drug development ,Modeling and Simulation ,Pharmacology, Clinical ,Perspective ,business ,Perspectives ,Systems pharmacology - Abstract
Immunogenicity is a major challenge in drug development and patient care. Currently, most efforts are dedicated to the elimination of the unwanted immune responses through T‐cell epitope prediction and protein engineering. However, because it is unlikely that this approach will lead to complete eradication of immunogenicity, we propose that quantitative systems pharmacology models should be developed to predict and manage immunogenicity. The potential impact of such a mechanistic model‐based approach is precedented by applications of physiologically‐based pharmacokinetics.
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- 2019
29. Antibody Conjugation of a Chimeric BET Degrader Enables in vivo Activity
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Isabel Figueroa, Shang-Fan Yu, Hao Zhou, Ruina Li, Hongyan Zhang, Douglas D. Leipold, Peter S. Dragovich, Karen E. Gascoigne, Amrita V. Kamath, Thomas H. Pillow, Gauri Deshmukh, Pragya Adhikari, Jinhua Chen, John S. Wai, Xinxin Wang, Robert A. Blake, Richard Zang, Xiaoyu Zhu, Tracy Kleinheinz, Chun Sing Li, Donglu Zhang, Geoffrey Del Rosario, Rebecca K. Rowntree, Hui Yao, Melinda M. Mulvihill, Katherine R. Kozak, Jack Sadowsky, Susan Kaufman, Aimee O'Donohue, Cong Wu, Zijin Xu, and Brandon Latifi
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Antibody-drug conjugate ,Immunoconjugates ,Cell Survival ,Cell Cycle Proteins ,Mice, SCID ,Protein degradation ,01 natural sciences ,Biochemistry ,Heterocyclic Compounds, 4 or More Rings ,Proto-Oncogene Proteins c-myc ,Mice ,In vivo ,Cell Line, Tumor ,Drug Discovery ,Animals ,Humans ,Lectins, C-Type ,General Pharmacology, Toxicology and Pharmaceutics ,Pharmacology ,Drug Carriers ,010405 organic chemistry ,Chemistry ,Organic Chemistry ,Antibodies, Monoclonal ,Surface Plasmon Resonance ,Fusion protein ,Small molecule ,Xenograft Model Antitumor Assays ,0104 chemical sciences ,010404 medicinal & biomolecular chemistry ,Leukemia, Myeloid, Acute ,Von Hippel-Lindau Tumor Suppressor Protein ,Receptors, Mitogen ,Drug delivery ,Proteolysis ,Biophysics ,Molecular Medicine ,Female ,Linker ,Conjugate ,Half-Life ,Protein Binding ,Transcription Factors - Abstract
The ability to selectively degrade proteins with bifunctional small molecules has the potential to fundamentally alter therapy in a variety of diseases. However, the relatively large size of these chimeric molecules often results in challenging physico-chemical properties (e. g., low aqueous solubility) and poor pharmacokinetics which may complicate their in vivo applications. We recently discovered an exquisitely potent chimeric BET degrader (GNE-987) which exhibited picomolar cell potencies but also demonstrated low in vivo exposures. In an effort to improve the pharmacokinetic properties of this molecule, we discovered the first degrader-antibody conjugate by attaching GNE-987 to an anti-CLL1 antibody via a novel linker. A single IV dose of the conjugate afforded sustained in vivo exposures that resulted in antigen-specific tumor regressions. Enhancement of a chimeric protein degrader with poor in vivo properties through antibody conjugation thereby expands the utility of directed protein degradation as both a biological tool and a therapeutic possibility.
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- 2019
30. Confirmation of the wide host range of Parvilucifera corolla (Alveolata, Perkinsozoa)
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Francisco Rodríguez and Rosa Isabel Figueroa
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Aquatic Organisms ,Life Cycle Stages ,Perkinsozoa ,Parvilucifera ,Medio Marino y Protección Ambiental ,biology ,Host (biology) ,Sporangium ,fungi ,Zoology ,biology.organism_classification ,Dinoflagellates ,Microbiology ,Host Specificity ,Parasitoid ,Parasite ,Symbiodinium ,Alveolata ,Genus ,Centro Oceanográfico de Vigo ,Pyramimonas ,Dinoflagellida ,Parasite hosting - Abstract
Marine parasites of the genus Parvilucifera have been described as endoparasitoids of dinoflagellates. Recently, the species Parvilucifera corolla was described, but its host range was not examined. Here, the host selectivity of P. corolla was screened, including 110 strains of dinoflagellates (24 genera) and other microalgal groups as potential hosts. Infections and the full life cycle of the parasitoid were observed in 73 strains (16 genera) of dinoflagellates. Parvilucifera corolla did not infect most chlorophytes, cryptophytes, chrysophytes, diatoms, haptophytes and raphidophytes but one strain of Pyramimonas(chlorophyte) was infected, although without viable sporangia. In Symbiodinium natans, a transition to the coccoid stage was induced above a certain parasite:host ratio. These results confirm P. corolla as a generalist parasitoid of dinoflagellates, with important differences in host range regarding other species of the genus., Sí
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- 2020
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31. Alexandrium catenella cyst accumulation by passive and active dispersal agents: Implications for the potential spreading risk in Chilean Patagonian fjords
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Isabel Bravo, Pablo Salgado, Iván Pérez-Santos, Rosa Isabel Figueroa, Manuel Díaz, Patricio A. Díaz, Miriam Seguel, Camilo Rodríguez-Villegas, Gemita Pizarro, Luis Iriarte, and Ángela Baldrich
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0106 biological sciences ,Alexandrium catenella ,Harmful Algal Bloom ,Population ,Fishing ,Plant Science ,010501 environmental sciences ,Aquatic Science ,01 natural sciences ,Aquaculture ,medicine ,Animals ,Chile ,Paralytic shellfish poisoning ,education ,0105 earth and related environmental sciences ,education.field_of_study ,biology ,Ecology ,business.industry ,010604 marine biology & hydrobiology ,fungi ,Dinoflagellate ,biology.organism_classification ,medicine.disease ,Dinoflagellida ,Biological dispersal ,Estuaries ,business ,Bloom - Abstract
The dinoflagellate Alexandrium catenella is responsible for paralytic shellfish poisoning and negative socioeconomic impacts on the fishing industry and aquaculture. In Chilean Patagonia, the reasons underlying the significant increase in the geographical extension (from south to north) of A. catenella blooms during the last five decades are not well understood. To assess the potential spreading risk of A. catenella during an intense austral summer bloom, we conducted an in situ experiment in a "hotspot" of this dinoflagellate in southern Chile. The objective was to assess the accumulation of A. catenella resting cysts in passive (fishing nets) and active (mussels) dispersal agents during the phase of bloom decline. Large numbers of resting cysts were detected in fishing nets (maximum of 5334 cysts net−1 per month) at 5 m depth and in mussels (maximum of 16 cysts g−1 of digestive gland) near Vergara Island. The potential of these vectors to serve as inoculum sources and the implications of our findings for A. catenella population dynamics are discussed.
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- 2020
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32. Chromosomal markers in the genus Karenia: Towards an understanding of the evolution of the chromosomes, life cycle patterns and phylogenetic relationships in dinoflagellates
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Alfredo de Bustos, Rosa Isabel Figueroa, and Angeles Cuadrado
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0301 basic medicine ,Medio Marino y Protección Ambiental ,lcsh:Medicine ,Biology ,Genome ,DNA, Ribosomal ,DNA sequencing ,Article ,Chromosomes ,Evolution, Molecular ,03 medical and health sciences ,0302 clinical medicine ,Centro Oceanográfico de Vigo ,medicine ,lcsh:Science ,Genome size ,Ribosomal DNA ,In Situ Hybridization, Fluorescence ,Phylogeny ,Life Cycle Stages ,Multidisciplinary ,medicine.diagnostic_test ,lcsh:R ,Dinoflagellate ,Chromosome ,biology.organism_classification ,Karenia ,030104 developmental biology ,Evolutionary biology ,Dinoflagellida ,lcsh:Q ,030217 neurology & neurosurgery ,Fluorescence in situ hybridization - Abstract
Dinofagellates are a group of protists whose genome is unique among eukaryotes in terms of base composition, chromosomal structure and gene expression. Even after decades of research, the structure and behavior of their amazing chromosomes—which without nucleosomes exist in a liquid crystalline state—are still poorly understood. We used fow cytometry and fuorescence in situ hybridization (FISH) to analyze the genome size of three species of the toxic dinofagellate genus Karenia as well the organization and behavior of the chromosomes in diferent cell-cycle stages. FISH was also used to study the distribution patterns of ribosomal DNA (45S rDNA), telomeric and microsatellites repeats in order to develop chromosomal markers. The results revealed several novel and important features regarding dinofagellate chromosomes during mitosis, including their telocentric behavior and radial arrangement along the nuclear envelope. Additionally, using the (AG)10 probe we identifed an unusual chromosome in K. selliformis and especially in K. mikimotoi that is characterized by AG repeats along its entire length. This feature was employed to easily diferentiate morphologically indistinguishable life-cycle stages. The evolutionary relationship between Karenia species is discussed with respect to diferences in both DNA content and the chromosomal distribution patterns of the DNA sequences analyzed., Sí
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- 2019
33. Scrippsiella acuminata versus Scrippsiella ramonii: A Physiological Comparison
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Rosa Isabel Figueroa, Francisco Rodríguez, Elena Fagín, Isabel Bravo, José L. Garrido, Fagín, Elena [0000-0001-8777-9907], and Fagín, Elena
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0301 basic medicine ,Species complex ,Histology ,Medio Marino y Protección Ambiental ,Zoology ,Outcrossing ,DNA, Ribosomal ,Algal bloom ,Pathology and Forensic Medicine ,03 medical and health sciences ,0302 clinical medicine ,Genus ,Centro Oceanográfico de Vigo ,life cycle ,Heterothallic ,Genetic variability ,Genome size ,Phylogeny ,Cell Nucleus ,biology ,flow cytometry ,Dinoflagellate ,Pigments, Biological ,Original Articles ,Cell Biology ,biology.organism_classification ,G2 Phase Cell Cycle Checkpoints ,030104 developmental biology ,030220 oncology & carcinogenesis ,S Phase Cell Cycle Checkpoints ,Scrippsiella ,genome size ,Dinoflagellida ,M Phase Cell Cycle Checkpoints ,Original Article ,cell cycle ,Chromatography, Liquid - Abstract
12 pages, 6 figures.-- Open access, Scrippsiella is a cosmopolitan dinoflagellate genus that is able to form Harmful Algal Blooms in coastal waters. The large physiological, morphological, and genetic variability that characterizes this genus suggest the existence of cryptic species. In this study, flow cytometric analyses were carried out to compare the cell cycle and life cycle of two Scrippsiella strains from two different species: Scrippsiella ramonii (VGO1053) and Scrippsiella acuminata (S3V). Both species were also investigated by internally transcribed spacer rDNA sequencing and high-performance liquid chromatography-based pigment analyses. The reddish-brown color of S. acuminata and yellowish-green hue of S. ramonii were consistent with the quantitative differences determined in their pigment profiles. Our results indicate that the cell cycle is light-controlled and that it differs in the two species. S-phase was detected during the light period in both, whereas the G2/M phase occurred during the light period in S. ramonii but under dark conditions in S. acuminata. The detection of 4C stages, mobile zygotes (planozygotes), and resting cysts in S. ramonii (nonclonal) provided convincing evidence of sexuality in this species. Sexual related processes were not found in the clonal S. acuminata strain, suggesting its heterothallic behavior (i.e., the need for outcrossing). The differences in the genome size of these species were examined as well, The present work was funded by the FORMAS (Sweden) project (Formas 215-2010-824), CCVIEO and CIGUATROP projects of the Instituto Español de Oceanografía and the Spanish project “Tropicalización y ciguatera en Canarias” funded by the Fundación Biodiversidad
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- 2019
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34. Tissue Physiology of Cynomolgus Monkeys: Cross-Species Comparison and Implications for Translational Pharmacology
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Jessica Couch, Sheila Ulufatu, C. Andrew Boswell, Danielle Mandikian, Gregory Z. Ferl, Saileta Prabhu, Isabel Figueroa, Amy Oldendorp, Sean B. Joseph, Noel Dybdal, Michelle G. Schweiger, and Hanine Rafidi
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Male ,0301 basic medicine ,Rodent ,Pharmaceutical Research ,Pharmaceutical Science ,Adipose tissue ,Spleen ,Pharmacology ,030226 pharmacology & pharmacy ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Bolus (medicine) ,Drug Development ,Species Specificity ,Pharmacokinetics ,biology.animal ,medicine ,Extracellular ,Animals ,Tissue Distribution ,Blood Volume ,biology ,Chemistry ,Body Weight ,Blood flow ,Rats ,Macaca fascicularis ,Red blood cell ,030104 developmental biology ,medicine.anatomical_structure ,Blood-Brain Barrier ,Models, Animal ,Female ,Radiopharmaceuticals ,Blood Flow Velocity - Abstract
We previously performed a comparative assessment of tissue-level vascular physiological parameters in mice and rats, two of the most commonly utilized species in translational drug development. The present work extends this effort to non-human primates by measuring tissue- and organ-level vascular volumes (Vv), interstitial volumes (Vi), and blood flow rates (Q) in cynomolgus monkeys. These measurements were accomplished by red blood cell labeling, extracellular marker infusion, and rubidium chloride bolus distribution, respectively, the same methods used in previous rodent measurements. In addition, whole-body blood volumes (BV) were determined across species. The results demonstrate that Vv, Vi, and Q, measured using our methods scale approximately by body weight across mouse, rat, and monkey in the tissues considered here, where allometric analysis allowed extrapolation to human parameters. Significant differences were observed between the values determined in this study and those reported in the literature, including Vv in muscle, brain, and skin and Q in muscle, adipose, heart, thymus, and spleen. The impact of these differences for selected tissues was evaluated via sensitivity analysis using a physiologically based pharmacokinetic model. The blood-brain barrier in monkeys was shown to be more impervious to an infused radioactive tracer, indium-111-pentetate, than in mice or rats. The body weight-normalized total BV measured in monkey agreed well with previously measured value in rats but was lower than that in mice. These findings have important implications for the common practice of scaling physiological parameters from rodents to primates in translational pharmacology.
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- 2018
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35. Development of Anti-CD74 Antibody-Drug Conjugates to Target Glucocorticoids to Immune Cells
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Juhi Firdos, Kern Jeffrey, Dennis M. Zaller, Douglas Hodges, Laurence Fayadat-Dilman, Isabel Figueroa, Shuli Zhang, Anthony Manibusan, Peter Stivers, Lily Y. Moy, Hyun Chong Woo, Yiwei Zhang, Nickolas Knudsen, Philip E. Brandish, Laura Garvin-Queen, Svetlana Antonenko, Kristen Kwasnjuk, Daniela M. Tomazela, Prasanthi Geda, SuChun Hseih, Mark T. Cancilla, Sanjiv J. Shah, Robert M. Garbaccio, Maribel Beaumont, John H. Shin, Lia Benso, Dennis Gately, Huiping Ma, Christopher Haines, Mangeng Cheng, Paul L. Miller, Mark Zielstorff, Linda Liang, Anthony Palmieri, Ying Sun, Guo Feng, and Yujie Qu
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0301 basic medicine ,Immunoconjugates ,Biomedical Engineering ,Anti-Inflammatory Agents ,Pharmaceutical Science ,Bioengineering ,Mice, Transgenic ,Pharmacology ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Immune system ,Glucocorticoid receptor ,Drug Delivery Systems ,Receptors, Glucocorticoid ,Antigen ,Drug Development ,Drug Stability ,In vivo ,medicine ,Animals ,Humans ,Receptor ,Glucocorticoids ,B-Lymphocytes ,biology ,Chemistry ,Organic Chemistry ,Histocompatibility Antigens Class II ,Antibodies, Monoclonal ,In vitro ,Antigens, Differentiation, B-Lymphocyte ,030104 developmental biology ,Mechanism of action ,030220 oncology & carcinogenesis ,biology.protein ,Fluticasone ,medicine.symptom ,Antibody ,Biotechnology - Abstract
Glucocorticoids (GCs) are excellent anti-inflammatory drugs but are dose-limited by on-target toxicity. We sought to solve this problem by delivering GCs to immune cells with antibody-drug conjugates (ADCs) using antibodies containing site-specific incorporation of a non-natural amino acid, novel linker chemistry for in vitro and in vivo stability, and existing and novel glucocorticoid receptor (GR) agonists as payloads. We directed fluticasone propionate to human antigen-presenting immune cells to afford GR activation that was dependent on the targeted antigen. However, mechanism of action studies pointed to accumulation of free payload in the tissue culture supernatant as the dominant driver of activity and indeed administration of the ADC to human CD74 transgenic mice failed to activate GR target genes in splenic B cells. Suspecting dissipation of released payload, we designed an ADC bearing a novel GR agonist payload with reduced permeability which afforded cell-intrinsic activity in human B cells. Our work shows that antibody-targeting offers significant potential for rescuing existing and new dose-limited drugs outside the field of oncology.
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- 2018
36. Stimulus-Response Mechanisms: An Overview
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Mohammad Tabrizi, S. Sadekar, Ayse M. Ovacik, and Isabel Figueroa
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Drug ,business.industry ,media_common.quotation_subject ,Stimulus (physiology) ,Stimulus response ,Clinical Practice ,Pharmacokinetics ,Drug development ,Pharmacodynamics ,Medicine ,business ,Neuroscience ,Organism ,media_common - Abstract
A key feature in drug development is examination of the correlations between biological stimulus processes and desired pharmacological effect(s). The effect of most drugs arises from their interactions with various macromolecules within the organism, resulting in alterations of functional and biochemical pathways, and the concentration of drug in the proximity of the biological receptor (biophase) determines the magnitude of the observed response. Hence, the optimal therapeutic use of drugs in clinical practice is facilitated by effective implementation of the principles of clinical pharmacokinetics (PK) and pharmacodynamics (PD). This brief chapter is provided to highlight key concepts significant for evaluation of stimulus-response mechanisms.
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- 2018
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37. Evaluation of Tumor Growth Inhibition in Preclinical Tumor Models: A Quantitative Approach
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Harish Shankaran, S. Sadekar, and Isabel Figueroa
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Antitumor activity ,Human disease ,business.industry ,Drug discovery ,Medicine ,Tumor growth inhibition ,Tumor growth ,Computational biology ,business ,Preclinical stage - Abstract
The drug discovery process entails the comparison and evaluation of various drug candidates before lead selection for advancement into later stages of preclinical and clinical development. Appropriate analysis of tumor growth data at the preclinical stage will aid in effective interpretation of the preclinical studies. In general, tumor growth models have a degree of intrinsic variability, so studies must be powered with an adequate number of replicates to enable differentiation of the anticipated effects. Interpretation of the findings and implications for translation to human disease, obtained from preclinical models, is rarely straightforward and limited by various factors. This chapter outlines various quantitative approaches commonly used to assess antitumor activity in preclinical models.
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- 2018
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38. Life histories of microalgal species causing harmful blooms: Haploids, diploids and the relevance of benthic stages
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Rosa Isabel Figueroa, Esther Garcés, and Marta Estrada
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0106 biological sciences ,Resting stages ,Harmful Algal Bloom ,Plant Science ,Aquatic Science ,Biology ,010603 evolutionary biology ,01 natural sciences ,Algal bloom ,Aquaculture ,Benthos ,Models ,Microalgae ,Harmful algal blooms ,Marine ecosystem ,Harmful algal species ,Life history ,Ecosystem ,Ecological niche ,Ploidies ,Ecology ,business.industry ,010604 marine biology & hydrobiology ,fungi ,Plankton ,Management ,Environmental and physiological factors ,Benthic zone ,Biological dispersal ,business - Abstract
14 pages, 2 figures, 3 tables, In coastal and offshore waters, Harmful Algal Blooms (HABs) currently threaten the well-being of coastal countries. These events, which can be localized or involve wide-ranging areas, pose risks to human health, marine ecosystems, and economic resources, such as tourism, fisheries, and aquaculture. Dynamics of HABs vary from one site to another, depending on the hydrographic and ecological conditions. The challenge in investigating HABs is that they are caused by organisms from multiple algal classes, each with its own unique features, including different life histories. The complete algal life cycle has been determined in, R.I. Figueroa was funded by a FORMAS (Sweden) project (Formas 215-2010-824)
- Published
- 2018
39. Antibody Drug Conjugates: Translational Considerations
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Mohammad Tabrizi, Isabel Figueroa, Jeff Grein, and Wendy M. Blumenschein
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Therapeutic window ,Drug ,biology ,business.industry ,media_common.quotation_subject ,biology.protein ,Medicine ,In patient ,Computational biology ,Antibody ,business ,media_common - Abstract
Antibody drug conjugates (ADCs) are increasingly employed as novel targeted therapies. Antibody drug conjugates combine the exquisite selectivity of targeted antibodies and the high potency of small-molecule drugs with the aim of achieving durable responses in patients. As application of highly potent small-molecule drugs can be limited by their undesirable toxicity, targeted delivery of highly potent small-molecule drugs to specific cells is intended at expanding the therapeutic window for the payload in the clinical setting. Critical parameters for design and selection of the antibody, target, and payload have been discussed in an earlier article (Sadekar et al., AAPS J 17: 828–36; 2015). Here, we have attempted to address some of the key translational topics critical for early development of this class of therapeutic. As anticipated, a successful transition of ADCs into the clinic will be highly dependent on effective translation of critical attributes governing exposure–response relationships across species.
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- 2018
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40. Nuclear and Cell Morphological Changes during the Cell Cycle and Growth of the Toxic Dinoflagellate Alexandrium minutum
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Isabel Bravo, Rosa Isabel Figueroa, Angeles Cuadrado, and Carlos Dapena
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Homothallism ,Light ,growth ,Population ,C-DNA ,nuclear size ,Cytoplasmic-to-nuclear ratio (CNR) ,Cell morphology ,Microbiology ,Polyploid ,Biological Clocks ,Centro Oceanográfico de Vigo ,Botany ,Medio Marino ,education ,Cell Nucleus ,education.field_of_study ,biology ,Cell Cycle ,Optical Imaging ,Dinoflagellate ,Cell cycle ,DNA, Protozoan ,Darkness ,biology.organism_classification ,Flow Cytometry ,Cell-cycle ,Dinoflagellates ,Cell biology ,cytoplasmic-to-nuclear ratio ,Nuclear size ,Dinoflagellida ,Ploidy ,ecology - Abstract
Elucidation of the cell cycle of dinoflagellates is essential to understand the processes leading to their massive proliferations, known as harmful algal blooms. In this study, we used imaging flow cytometry (IFC) to monitor the changes in DNA content and nuclear and cell morphology that occur during clonal growth of the toxic species Alexandrium minutum Halim. Our results indicate that the population was in S phase (C→2C DNA content) during the light period, whereas haploid cells with a C DNA content peaked only during a short interval of the dark period. The timing of the phases, identified based on the nuclear morphology and cytoplasmic-to-nuclear (CNR) ratio of the cells, suggests that the length of the G2/M phase is regulated by nutrient levels whereas the beginning of S phase is clock controlled. In addition we found that up to 7% of individual cells achieved a DNA content higher than 2C, indicative of either zygote formation and replication (homothallism), or of double-haploid cells able to divide (polyploid forms). Cells belonging to different cell cycle phases (G1-S-G2/M) could be readily discriminated based on nuclear size. Our study provides evidence of cell-cycle plasticity during clonal growth and unambiguously characterizes the cell-cycle phases of this dinoflagellate species., SI
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- 2015
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41. Corrigendum to 'Canary Islands (NE Atlantic) as a biodiversity hotspot of Gambierdiscus: Implications for future trends of ciguatera in the area'
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Pilar Riobó, Pilar Rial, Isabel Ramilo, Rosa Isabel Figueroa, Francisco Rodríguez, Santiago Fraga, and Isabel Bravo
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Ciguatera ,Geography ,Oceanography ,biology ,Ecology ,medicine ,Plant Science ,Gambierdiscus ,Aquatic Science ,medicine.disease ,biology.organism_classification ,Biodiversity hotspot - Published
- 2017
42. The life history of the toxic marine dinoflagellate Protoceratium reticulatum (Gonyaulacales) in culture
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Isabel Ramilo, Rosa Isabel Figueroa, Isabel Bravo, and Pablo Salgado
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0106 biological sciences ,0301 basic medicine ,Homothallism ,Mating type ,Aquatic Organisms ,Cell division ,Zygote ,Zoology ,Plant Science ,Aquatic Science ,Flagellum ,01 natural sciences ,03 medical and health sciences ,Botany ,medicine ,life cycle ,Heterothallic ,Life history ,Cell Nucleus ,Life Cycle Stages ,biology ,010604 marine biology & hydrobiology ,Dinoflagellate ,Resting cysts ,DNA ,biology.organism_classification ,Longitudinal biflagellation ,Sexual reproduction ,Kinetics ,Protoceratium reticulatum ,Planozygote and germling division ,030104 developmental biology ,medicine.anatomical_structure ,Dinoflagellida ,Gamete ,Sexual cycle ,Cell Division - Abstract
Asexual and sexual life cycle events were studied in cultures of the toxic marine dinoflagellate Protoceratium reticulatum. Asexual division by desmoschisis was characterized morphologically and changes in DNA content were analyzed by flow cytometry. The results indicated that haploid cells with a C DNA content occurred only during the light period whereas a shift from a C to a 2C DNA content (indicative of S phase) took place only during darkness. The sexual life cycle was documented by examining the mating type as well as the morphology of the sexual stages and nuclei. Gamete fusion resulted in a planozygote with two longitudinal flagella, but longitudinally biflagellated cells arising from planozygote division were also observed, so one of the daughter cells retained two longitudinal flagella while the other daughter cell lacked them. Presumed planozygotes (identified by their longitudinally biflagellated form) followed two life-cycle routes: division and encystment (resting cyst formation). Both the division of longitudinally biflagellated cells and resting cyst formation are morphologically described herein. Resting cyst formation through sexual reproduction was observed in 6.1% of crosses and followed a complex heterothallic pattern. Clonal strains underwent sexuality (homothallism for planozygote formation and division) but without the production of resting cysts. Ornamental processes of resting cysts formed from the cyst wall under an outer balloon-shaped membrane and were fully developed in
- Published
- 2017
43. Front Cover: Antibody Conjugation of a Chimeric BET Degrader Enables in vivo Activity (ChemMedChem 1/2020)
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John S. Wai, Richard Zang, Geoffrey Del Rosario, Rebecca K. Rowntree, Peter S. Dragovich, Ruina Li, Thomas H. Pillow, Gauri Deshmukh, Melinda M. Mulvihill, Xinxin Wang, Pragya Adhikari, Jinhua Chen, Amrita V. Kamath, Hao Zhou, Donglu Zhang, Isabel Figueroa, Shang-Fan Yu, Cong Wu, Chun Sing Li, Douglas D. Leipold, Hongyan Zhang, Hui Yao, Karen E. Gascoigne, Katherine R. Kozak, Brandon Latifi, Tracy Kleinheinz, Jack Sadowsky, Susan Kaufman, Robert A. Blake, Xiaoyu Zhu, Zijin Xu, and Aimee O'Donohue
- Subjects
Pharmacology ,Antibody-drug conjugate ,biology ,Chemistry ,Organic Chemistry ,Biochemistry ,Molecular biology ,Front cover ,In vivo ,Drug Discovery ,Drug delivery ,biology.protein ,Molecular Medicine ,General Pharmacology, Toxicology and Pharmaceutics ,Antibody - Published
- 2020
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44. The potential for arms race and Red Queen coevolution in a protist host–parasite system
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Esther Garcés, Lars Råberg, Rosa Isabel Figueroa, and Elisabet Alacid
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Alexandrium minutum ,Frequency-dependent selection ,Biology ,dinoflagellate ,medicine.disease_cause ,Centro Oceanográfico de Vigo ,Genotype ,medicine ,Parasite hosting ,Medio Marino ,subpopulations ,Allele frequency ,Ecology, Evolution, Behavior and Systematics ,Coevolution ,Original Research ,Nature and Landscape Conservation ,Infectivity ,Genetics ,Dinoflagellate ,Ecology ,Host (biology) ,Protist ,frequency-dependent selection ,Parvilucifera sinerae ,frequency ,Fluctuating selection ,fluctuating selection ,dinoflagellates ,ecology - Abstract
11 pages, 6 figures, supporting information http://onlinelibrary.wiley.com/doi/10.1002/ece3.1314/suppinfo, Ecology and Evolution published by John Wiley & Sons Ltd. The dynamics and consequences of host-parasite coevolution depend on the nature of host genotype-by-parasite genotype interactions (G × G) for host and parasite fitness. G × G with crossing reaction norms can yield cyclic dynamics of allele frequencies ("Red Queen" dynamics) while G × G where the variance among host genotypes differs between parasite genotypes results in selective sweeps ("arms race" dynamics). Here, we investigate the relative potential for arms race and Red Queen coevolution in a protist host-parasite system, the dinoflagellate Alexandrium minutum and its parasite Parvilucifera sinerae. We challenged nine different clones of A. minutum with 10 clones of P. sinerae in a fully factorial design and measured infection success and host and parasite fitness. Each host genotype was successfully infected by four to ten of the parasite genotypes. There were strong G × Gs for infection success, as well as both host and parasite fitness. About three quarters of the G × G variance components for host and parasite fitness were due to crossing reaction norms. There were no general costs of resistance or infectivity. We conclude that there is high potential for Red Queen dynamics in this host-parasite system. We investigate the relative potential for arms race and Red Queen coevolution in a protist host-parasite system by dissecting the nature of host geontype-by-parasite genotype interactions (G × G). G × Gs were mainly a result of crossing reaction norms, indicating high potential for Red Queen dynamics. © 2014 The Authors, This research was funded by the Crafoord Foundation (contract 2011:0882 to RF) and Spanish Ministry of Science and Innovation (project PARAL CTM2009-08399 to EG). L. Råberg was supported by a fellowship from the Swedish Research Council
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- 2014
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45. Model-Based Scale-up and Design Space Determination for a Batch Reactive Distillation with a Dean–Stark Trap
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Shekhar Viswanath, Shankar Vaidyaraman, and Isabel Figueroa
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Process (engineering) ,business.industry ,Scale (chemistry) ,Organic Chemistry ,Quality by Design ,law.invention ,law ,Heat transfer ,Reactive distillation ,SCALE-UP ,Sensitivity (control systems) ,Physical and Theoretical Chemistry ,Process engineering ,business ,Distillation - Abstract
Batch reactive distillations are commonly used unit operations in the pharmaceutical industry to drive chemical equilibrium reactions to completion. Their scale-up and transfer to manufacturing is not straightforward due to the interplay of scale dependent and scale independent phenomena. The increased process knowledge as required by the Quality by Design (QbD) approach calls for a first-principles-based design, scale-up and transfer of such processes. This paper presents a systematic approach consisting of a combination of first principles modeling and experimentation for the scale-up from bench to pilot-plant scale. The model is then used to estimate the process performance at different scales and study the sensitivity of the process to operational parameters such as heat transfer driving force, solvent recycle, removed fraction of volatiles. This approach is capable of robustly predicting process outcomes at lab and pilot-plant scale and delivers a better understanding of the underlying physics govern...
- Published
- 2013
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46. Parvilucifera sinerae (Alveolata, Myzozoa) is a Generalist Parasitoid of Dinoflagellates
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Rosa Isabel Figueroa, Isabel Bravo, Santiago Fraga, Esther Garcés, Elisabet Alacid, Alacid, E. (Elisabet), Bravo, I. (Isabel), Fraga, S. (Santiago), and Figueroa, R.I. (Rosa Isabel)
- Subjects
Perkinsids ,Parvilucifera ,Spores, Protozoan ,dinoflagellate ,Microbiology ,Centro Oceanográfico de Vigo ,Botany ,Microalgae ,Gymnodinium ,Medio Marino ,Microscopy ,biology ,Amphidinium ,fungi ,Dinoflagellate ,biology.organism_classification ,Dinoflagellates ,Parasite ,Karenia ,Alveolata ,parasite ,Phalacroma ,Karlodinium ,Apicomplexa ,Dinophysis - Abstract
16 pages, 7 figures, 4 tables, This study begins with a description of the infective process in the dinoflagellate type host Alexandrium minutum by a strain of the parasitoid, Parvilucifera sinerae, including the morphologies of the various dinoflagellate and parasitoid stages during the infection. Then, the susceptibility of 433 microalgal strains to P. sinerae infection was studied. The parasitoid was found to be capable of infecting several dinoflagellate species of the genera Alexandrium, Coolia, Dinophysis, Fragilidium, Gambierdiscus, Gymnodinium, Gyrodinium, Heterocapsa, Kryptoperidinium, Lepidodinium, Ostreopsis, Pentapharsodinium, Protoceratium, Scrippsiella, and Woloszynskia. Intra-strain variability was observed as well, such that within the same dinoflagellate species some strains were infected whereas others were not. Likewise, species of other dinoflagellate genera were not infected, such as Akashiwo, Amphidinium, Barrufeta, Bysmatrum, Karenia, Karlodinium, Prorocentrum, and Takayama. Moreover, P. sinerae was not able to infect any of the tested haptophyte, diatom, and chlorophyte species. In natural samples screened for P. sinerae infectivity, several dinoflagellate species of the genera Alexandrium, Coolia, Gonyaulax, Gymnodinium, Phalacroma, Protoperidinium, and Scrippsiella were identified as susceptible. Sporangia size was found to be proportional to the size of the host, and variations in the sporangia size were observed to influence their maturation time, This study was supported by the Spanish funded project PARAL (CTM2009-08399) and project CCVIEO. We thank N. Sampedro, A. Re˜né, S. Anglès, F. Rodriguez, and C. Satta for providing several strains used in this study. We also acknowledge the technical assistance of I. Ramilo, A. Fernández, and P. Rial in culturing the strains. W. Coats provided very useful comments on an earlier version of the manuscript
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- 2013
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47. Life-cycle, ultrastructure, and phylogeny of Parvilucifera corolla sp. nov. (Alveolata, Perkinsozoa), a parasitoid of dinoflagellates
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Francisco Rodríguez, Esther Garcés, Elisabet Alacid, Albert Reñé, Rosa Isabel Figueroa, and Consejo Superior de Investigaciones Científicas (España)
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0301 basic medicine ,Parvilucifera ,Zoospore ,Harmful Algal Blooms ,phylogeny ,DNA, Ribosomal ,Microbiology ,Schizogony ,03 medical and health sciences ,Genus ,Botany ,Mediterranean Sea ,Seawater ,Phylogeny ,Life Cycle Stages ,Parvilucifera phylogeny ,biology ,Host (biology) ,HAB ,Dinoflagellate ,biology.organism_classification ,Apical complex ,mitochondria ,Parasite ,Microscopy, Electron ,030104 developmental biology ,Alveolata ,Spain ,Ultrastructure ,Parvilucifera sinerae ,Dinoflagellida - Abstract
17 pages, 8 figures, 1 table, Recent studies of marine protists have revealed parasites to be key components of marine communities. Here we describe a new species of the parasitoid genus Parvilucifera that was observed infecting the dinoflagellate Durinskia baltica in salt marshes of the Catalan coast (NW Mediterranean). In parallel, the same species was detected after the incubation of seawater from the Canary Islands (Lanzarote, NE Atlantic). The successful isolation of strains from both localities allowed description of the life cycle, ultrastructure, and phylogeny of the species. Its infection mechanism consists of a free-living zoospore that penetrates a dinoflagellate cell. The resulting trophont gradually degrades the dinoflagellate cytoplasm while growing in size. Once the host is consumed, schizogony of the parasitoid yields a sporocyte. After cytokinesis is complete, the newly formed zoospores are released into the environment and are ready to infect new host cells. A distinguishing feature of the species is the radial arrangement of its zoospores around the central area of the sporocyte during their formation. The species shows a close morphological similarity with other species of the genus, including P. infectans, P. sinerae, and P. rostrata, This study was supported by the Consejo Superior de Investigaciones Científicas (CSIC) through the project ECOPAR (CSIC Intramural Project) granted to E. Garcés
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- 2017
48. 'Canary Islands (NE Atlantic) as a biodiversity ‘hotspot’ of Gambierdiscus: Implications for future trends of ciguatera in the area'
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Isabel Ramilo, Pilar Riobó, Santiago Fraga, Pilar Rial, Isabel Bravo, Francisco Rodríguez, and Rosa Isabel Figueroa
- Subjects
0106 biological sciences ,0301 basic medicine ,Ciguatera ,Ciguatoxin ,Gambierdiscus ,islands ,Climate change ,Canary Islands ,Plant Science ,Aquatic Science ,Biology ,DNA, Ribosomal ,01 natural sciences ,03 medical and health sciences ,Dry weight ,Abundance (ecology) ,Centro Oceanográfico de Vigo ,medicine ,Benthic dinoflagellates ,Medio Marino ,Phylogeny ,biodiversity ,Islands ,fish ,SSUrRNA ,Ecology ,010604 marine biology & hydrobiology ,Ciguatera Poisoning ,LSUrRNA ,Biodiversity ,medicine.disease ,Biodiversity hotspot ,Food web ,Macrophyte ,030104 developmental biology ,Spain ,Dinoflagellida - Abstract
13 pages, 7 figures, 1 table.-- This is an open access article under the CC BY-NC-ND license, In the present study the geographical distribution, abundance and composition of Gambierdiscus was described over a 600 km longitudinal scale in the Canary Islands. Samples for cell counts, isolation and identification of Gambierdiscus were obtained from five islands (El Hierro, Tenerife, Gran Canaria, Fuerteventura and Lanzarote). Average densities of Gambierdiscus spp. between 0 and 2200 cells g−1 blot dry weight of macrophyte were recorded. Morphological (light microscopy and SEM techniques) and molecular analyses (LSU and SSU rDNA sequencing of cultures and single cells from the field) of Gambierdiscus was performed. Five Gambierdiscus species (G. australes, G. caribaeus, G. carolinianus, G. excentricus and G. silvae), together with a new putative species (Gambierdiscus ribotype 3) were identified. These results suggest that some cases of CFP in the region could be associated with the accumulation of ciguatoxins in the marine food web acquired from local populations of Gambierdiscus. This unexpected high diversity of Gambierdiscus species in an area which a priori is not under risk of ciguatera, hints at an ancient settlement of Gambierdiscus populations, likely favored by warmer climate conditions in the Miocene Epoch (when oldest current Canary Islands were created), in contrast with cooler present ones. Currently, warming trends associated with climate change could contribute to extend favorable environmental conditions in the area for Gambierdiscus growth especially during winter months, This work was funded by Spanish project CICAN (CGL2013-40671-R)
- Published
- 2017
49. CELL CYCLE AND CELL MORTALITY OF ALEXANDRIUM MINUTUM (DINOPHYCEAE) UNDER SMALL-SCALE TURBULENCE CONDITIONS(1)
- Author
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Gisela, Llaveria, Rosa Isabel, Figueroa, Esther, Garcés, and Elisa, Berdalet
- Abstract
Decreased net population growth rates and cellular abundances have been observed in dinoflagellate species exposed to small-scale turbulence. Here, we investigated whether these effects were caused by alterations in the cell cycle and/or by cell mortality and, in turn, whether these two mechanisms depended on the duration of exposure to turbulence. The study was conducted on the toxic dinoflagellate Alexandrium minutum Halim, with the same experimental design and setup used in previous studies to allow direct comparison among results. A combination of microscopy and Coulter Counter measurements allowed us to detect cell mortality, based on the biovolume of broken cells and thecae. The turbulence applied during the exponential growth phase caused an immediate transitory arrest in the G2/M phase, but significant mortality did not occur. This finding suggests that high intensities of small-scale turbulence can alter the cell division, likely affecting the correct chromosome segregation during the dinomitosis. When shaking persisted for4 d, mortality signals and presence of anomalously swollen cells appeared, hinting at the activation of mechanisms that induce programmed cell death. Our study suggests that the sensitivity of dinoflagellates to turbulence may drive these organisms to find the most favorable (calm) conditions to complete their division cycle.
- Published
- 2016
50. INTERACTIVE EFFECTS OF SALINITY AND TEMPERATURE ON PLANOZYGOTE AND CYST FORMATION OF ALEXANDRIUM MINUTUM (DINOPHYCEAE) IN CULTURE(1)
- Author
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Rosa Isabel, Figueroa, Jose Antonio, Vázquez, Ana, Massanet, Miguel Anxo, Murado, and Isabel, Bravo
- Abstract
The factors regulating dinoflagellate life-cycle transitions are poorly understood. However, their identification is essential to unravel the causes promoting the outbreaks of harmful algal blooms (HABs) because these blooms are often associated with the formation and germination of sexual cysts. Nevertheless, there is a lack of knowledge on the factors regulating planozygote-cyst transitions in dinoflagellates due to the difficulties of differentiating planozygotes from vegetative stages. In the present study, two different approaches were used to clarify the relevance of environmental factors on planozygote and cyst formation of the toxic dinoflagellate Alexandrium minutum Halim. First, the effects of changes in initial phosphate (P) and nitrate (N) concentrations in the medium on the percentage of planozygotes formed were examined using flow cytometry. Second, two factorial designs were used to determine how salinity (S), temperature (T), and the density of the initial cell inoculum (I) affect planozygote and resting-cyst formation. These experiments led to the following conclusions: 1. Low P/N ratios seem to induce gamete expression because the percentage of planozygotes recorded in the absence of added phosphate (-P) was significantly higher than that obtained in the absence of added nitrogen (-N), or when the concentrations of both nitrogen and phosphate were 20 times lower (N/20 + P/20). 2. Salinity (S) and temperature (T) strongly affected both planozygote and cyst formation, as sexuality in the population increased significantly as salinity decreased and temperatures increased. S, T combinations that resulted in no significant cyst formation were, however, favorable for vegetative growth, ruling out the possibility of negative effects on cell physiology. 3. The initial cell density is thought to be important for sexual cyst formation by determining the chances of gamete contact. However, the inoculum concentrations tested did not explain either planozygote formation or the appearance of resting cysts.
- Published
- 2016
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