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We present results from MeerKAT single-dish HI intensity maps, the final observations to be performed in L-band in the MeerKAT Large Area Synoptic Survey (MeerKLASS) campaign. The observations represent the deepest single-dish HI intensity maps to date, produced from 41 repeated scans over $236\,{\rm deg}^2$, providing 62 hours of observational data for each of the 64 dishes before flagging. By introducing an iterative self-calibration process, the estimated thermal noise of the reconstructed maps is limited to ${\sim}\,1.21\,$mK ($1.2\,\times$ the theoretical noise level). This thermal noise will be sub-dominant relative to the HI fluctuations on large scales ($k\,{\lesssim}\,0.15\,h\,\text{Mpc}^{-1}$), which demands upgrades to power spectrum analysis techniques, particularly for covariance estimation. In this work, we present the improved MeerKLASS analysis pipeline, validating it on both a suite of mock simulations and a small sample of overlapping spectroscopic galaxies from the Galaxy And Mass Assembly (GAMA) survey. Despite only overlapping with ${\sim}\,25\%$ of the MeerKLASS deep field, and a conservative approach to covariance estimation, we still obtain a ${>}\,4\,\sigma$ detection of the cross-power spectrum between the intensity maps and the 2269 galaxies at the narrow redshift range $0.39\,{<}\,z\,{<}\,0.46$. We briefly discuss the HI auto-power spectrum from this data, the detection of which will be the focus of follow-up work. For the first time with MeerKAT single-dish intensity maps, we also present evidence of HI emission from stacking the maps onto the positions of the GAMA galaxies., Comment: 29 pages, 27 figures. See Fig.14 and 15 for auto-HI and HI-galaxy cross power spectra. Fig 19 and 20 for stacking detections. Submitted to MNRAS

Radio Frequency Interference (RFI) is emitted from various sources, terrestrial or orbital, and create a nuisance for ground-based 21cm experiments. In particular, single-dish 21cm intensity mapping experiments will be highly susceptible to contamination from these sources due to its wide primary beam and sensitivity. This work aims to simulate the contamination effects emitted from orbital sources in the Radio Navigational Satellite System within the 1100-1350 MHz frequency. This simulation can be split into two parts: (I) satellite positioning, emission power, and beam response on the telescope and (II) fitting of the satellite signal to data in order to improve the original model. We use previously observed single dish MeerKAT L-band data which needs to be specially calibrated to include data contaminated by satellite-based RFI. We find that due to non-linearity effects, it becomes non-trivial to fit the satellite power. However, when masking regions where this non-linearity is problematic, we can recreate the satellite contamination with high accuracy around its peak frequencies. The simulation can predict satellite movements and signal for past and future observations, which can help in RFI avoidance and testing novel cleaning methods. The predicted signal from simulations sits below the noise in the target cosmology window for the L-band (970 - 1015 MHz) making it difficult to confirm any out-of-band emission from satellites. However, a power spectrum analysis shows that such signal can still contaminate the 21cm power spectrum at these frequencies. In our simulations, this contamination overwhelms the auto-power spectrum but still allows for a clean detection of the signal in cross-correlations with mild foreground cleaning. Whether such contamination does exist one will require further characterization of the satellite signals far away from their peak frequencies., Comment: 20 pages, 27 figures, 4 tables, Comments welcome

Blind cleaning methods are currently the preferred strategy for handling foreground contamination in single-dish HI intensity mapping surveys. Despite the increasing sophistication of blind techniques, some signal loss will be inevitable across all scales. Constructing a corrective transfer function using mock signal injection into the contaminated data has been a practice relied on for HI intensity mapping experiments. However, assessing whether this approach is viable for future intensity mapping surveys where precision cosmology is the aim, remains unexplored. In this work, using simulations, we validate for the first time the use of a foreground transfer function to reconstruct power spectra of foreground-cleaned low-redshift intensity maps and look to expose any limitations. We reveal that even when aggressive foreground cleaning is required, which causes ${>}\,50\%$ negative bias on the largest scales, the power spectrum can be reconstructed using a transfer function to within sub-percent accuracy. We specifically outline the recipe for constructing an unbiased transfer function, highlighting the pitfalls if one deviates from this recipe, and also correctly identify how a transfer function should be applied in an auto-correlation power spectrum. We validate a method that utilises the transfer function variance for error estimation in foreground-cleaned power spectra. Finally, we demonstrate how incorrect fiducial parameter assumptions (up to ${\pm}100\%$ bias) in the generation of mocks, used in the construction of the transfer function, do not significantly bias signal reconstruction or parameter inference (inducing ${<}\,5\%$ bias in recovered values)., Comment: 25 pages, 20 figures. See Figure 4 for the main demonstration of the transfer function's performance for reconstructing signal loss from foreground cleaning. Accepted for publication in MNRAS

We present and compare several methods to mitigate time-correlated (1/f) noise within the HI intensity mapping component of the MeerKAT Large Area Synoptic Survey (MeerKLASS). By simulating scan strategies, the HI signal, foreground emissions, white and correlated noise, we assess the ability of various data processing pipelines to recover the power spectrum of HI brightness temperature fluctuations. We use MeerKAT pilot data to assess the level of 1/f noise expected for the MeerKLASS survey and use these measurements to create realistic levels of time-correlated noise for our simulations. We find the time-correlated noise component within the pilot data to be between 10 and 20 times higher than the white noise level at the scale of k = 0.04 Mpc^-1. Having determined that the MeerKAT 1/f noise is partially correlated across all the frequency channels, we employ Singular Value Decomposition (SVD) as a technique to remove both the 1/f noise and Galactic foregrounds but find that over-cleaning results in the removal of HI power at large (angular and radial) scales; a power loss of 40 per cent is seen for a 3-mode SVD clean at the scale of k = 0.04 Mpc^-1. We compare the impact of map-making using weighting by the full noise covariance (i.e. including a 1/f component), as opposed to just a simple unweighted binning, finding that including the time-correlated noise information reduces the excess power added by 1/f noise by up to 30 per cent., Comment: 14 pages, 12 figures, accepted by MNRAS. This replacement features updated simulations which now include foreground emissions, telescope slew time and a receiver and elevation-dependant temperature contribution to each receiver which changes over frequency

We present a detection of correlated clustering between MeerKAT radio intensity maps and galaxies from the WiggleZ Dark Energy Survey. We find a $7.7\sigma$ detection of the cross-correlation power spectrum, the amplitude of which is proportional to the product of the HI density fraction ($\Omega_{\rm HI}$), HI bias ($b_{\rm HI}$) and the cross-correlation coefficient ($r$). We therefore obtain the constraint $\Omega_{\rm HI} b_{\rm HI} r\,{=}\,[0.86\,{\pm}\,0.10\,({\rm stat})\,{\pm}\,0.12\,({\rm sys})]\,{\times}\,10^{-3}$, at an effective scale of $k_{\rm eff}\,{\sim}\,0.13\,h\,{\rm Mpc}^{-1}$. The intensity maps were obtained from a pilot survey with the MeerKAT telescope, a 64-dish pathfinder array to the SKA Observatory (SKAO). The data were collected from 10.5 hours of observations using MeerKAT's L-band receivers over six nights covering the 11hr field of WiggleZ, in the frequency range $1015-973\,{\rm MHz}$ (0.400$\,{<}\,z\,{<}\,$0.459 in redshift). This detection is the first practical demonstration of the multi-dish auto-correlation intensity mapping technique for cosmology. This marks an important milestone in the roadmap for the cosmology science case with the full SKAO., Comment: 11 pages, 7 figures. See Fig.5 for the main result, showing the cross-power spectrum between MeerKAT and WiggleZ, revealing the 7.7\sigma detection. v2 is the version accepted for publication by MNRAS. The main changes from v1 were in introducing the radio intensity mapping data

21cm intensity mapping experiments are bringing an influx of high spectral resolution observational data in the $\sim100$ MHz $- 1$ GHz regime. We use pilot $971-1075$ MHz data from MeerKAT in single-dish mode, recently used to test the calibration and data reduction scheme of the upcoming MeerKLASS survey, to probe the spectral index of diffuse synchrotron emission below 1 GHz within $145^{\circ} < \alpha < 180^{\circ}$, $-1^{\circ} < \delta < 8^{\circ}$. Through comparisons with data from the OVRO Long Wavelength Array and the Maipu and MU surveys, we find an average spectral index of $-2.75 < \beta < -2.71$ between 45 and 1055 MHz. By fitting for spectral curvature with a spectral index of the form $\beta + c \, {\rm{ln}}(\nu / 73~{\rm MHz})$, we measure $\beta = -2.55 \pm 0.13$ and $c = -0.12 \pm 0.05$ within our target field. Our results are in good agreement (within $1\sigma$) with existing measurements from experiments such as ARCADE2 and EDGES. These results show the calibration accuracy of current data and demonstrate that MeerKLASS will also be capable of achieving a secondary science goal of probing the interstellar medium., Comment: 17 pages, 13 figures, accepted for publication in MNRAS. Updated to match published paper (additional references and acknowledgements)

Neutral Hydrogen Intensity Mapping (HI IM) surveys will be a powerful new probe of cosmology. However, strong astrophysical foregrounds contaminate the signal and their coupling with instrumental systematics further increases the data cleaning complexity. In this work, we simulate a realistic single-dish HI IM survey of a $5000$~deg$^2$ patch in the $950 - 1400$ MHz range, with both the MID telescope of the SKA Observatory (SKAO) and MeerKAT, its precursor. We include a state-of-the-art HI simulations and explore different foreground models and instrumental effects such as non-homogeneous thermal noise and beam side-lobes. We perform the first Blind Foreground Subtraction Challenge for HI IM on these synthetic data-cubes, aiming to characterise the performance of available foreground cleaning methods with no prior knowledge of the sky components and noise level. Nine foreground cleaning pipelines joined the Challenge, based on statistical source separation algorithms, blind polynomial fitting, and an astrophysical-informed parametric fit to foregrounds. We devise metrics to compare the pipeline performances quantitatively. In general, they can recover the input maps' 2-point statistics within 20 per cent in the range of scales least affected by the telescope beam. However, spurious artefacts appear in the cleaned maps due to interactions between the foreground structure and the beam side-lobes. We conclude that it is fundamental to develop accurate beam deconvolution algorithms and test data post-processing steps carefully before cleaning. This study was performed as part of SKAO preparatory work by the HI IM Focus Group of the SKA Cosmology Science Working Group., Comment: Accepted version for publication in MNRAS

The high dynamic range between contaminating foreground emission and the fluctuating 21cm brightness temperature field is one of the most problematic characteristics of 21cm intensity mapping data. While these components would ordinarily have distinctive frequency spectra, making it relatively easy to separate them, instrumental effects and calibration errors further complicate matters by modulating and mixing them together. A popular class of foreground cleaning method are unsupervised techniques related to Principal Component Analysis (PCA), which exploit the different shapes and amplitudes of each component's contribution to the covariance of the data in order to segregate the signals. These methods have been shown to be effective at removing foregrounds, while also unavoidably filtering out some of the 21cm signal too. In this paper we examine, for the first time in the context of 21cm intensity mapping, a generalised method called Kernel PCA, which instead operates on the covariance of non-linear transformations of the data. This allows more flexible functional bases to be constructed, in principle allowing a cleaner separation between foregrounds and the 21cm signal to be found. We show that Kernel PCA is effective when applied to simulated single-dish (autocorrelation) 21cm data under a variety of assumptions about foregrounds models, instrumental effects etc. It presents a different set of behaviours to PCA, e.g. in terms of sensitivity to the data resolution and smoothing scale, outperforming it on intermediate to large scales in most scenarios., Comment: 14 pages + 3 new pages, 11 + 5 new figures. Updated to match version accepted by MNRAS

While most purpose-built 21cm intensity mapping experiments are close-packed interferometer arrays, general-purpose dish arrays should also be capable of measuring the cosmological 21cm signal. This can be achieved most efficiently if the array is used as a collection of scanning autocorrelation dishes rather than as an interferometer. As a first step towards demonstrating the feasibility of this observing strategy, we show that we are able to successfully calibrate dual-polarisation autocorrelation data from 64 MeerKAT dishes in the L-band (856-1712 MHz, 4096 channels), with 10.5 hours of data retained from six nights of observing. We describe our calibration pipeline, which is based on multi-level RFI flagging, periodic noise diode injection to stabilise gain drifts and an absolute calibration based on a multi-component sky model. We show that it is sufficiently accurate to recover maps of diffuse celestial emission and point sources over a 10 deg x 30 deg patch of the sky overlapping with the WiggleZ 11hr field. The reconstructed maps have a good level of consistency between per-dish maps and external datasets, with the estimated thermal noise limited to 1.4 x the theoretical noise level (~ 2 mK). The residual maps have rms amplitudes below 0.1 K, corresponding to <1% of the model temperature. The reconstructed Galactic HI intensity map shows excellent agreement with the Effelsberg-Bonn HI Survey, and the flux of the radio galaxy 4C+03.18 is recovered to within 3.6%, which demonstrates that the autocorrelation can be successfully calibrated to give the zero-spacing flux and potentially help in the imaging of MeerKAT interferometric data. Our results provide a positive indication towards the feasibility of using MeerKAT and the future SKA to measure the HI intensity mapping signal and probe cosmology on degree scales and above., Comment: 24 pages, 34 figures, accepted for publication in MNRAS

The success of HI intensity mapping is largely dependent on how well 21cm foreground contamination can be controlled. In order to progress our understanding further, we present a range of simulated foreground data from four different $\sim3000$\,deg$^2$ sky regions, with and without effects from polarization leakage. Combining these with underlying cosmological HI simulations creates a range of single-dish intensity mapping test cases that require different foreground treatments. This allows us to conduct the most generalized study to date into 21cm foregrounds and their cleaning techniques for the post-reionization era. We first provide a pedagogical review of the most commonly used blind foreground removal techniques (PCA/SVD, FASTICA, GMCA). We also trial a non-blind parametric fitting technique and discuss potential hybridization of methods. We highlight the similarities and differences in these techniques finding that the blind methods produce near equivalent results, and we explain the fundamental reasons for this. The simulations allow an exact decomposition of the resulting cleaned data and we analyse the contribution from foreground residuals. Our results demonstrate that polarized foreground residuals should be generally subdominant to HI on small scales ($k\gtrsim0.1\,h\,\text{Mpc}^{-1}$). However, on larger scales, results are more region dependent. In some cases, aggressive cleans severely damp HI power but still leave dominant foreground residuals. We also demonstrate the gain from cross-correlations with optical galaxy surveys, where extreme levels of residual foregrounds can be circumvented. However, these residuals still contribute to errors and we discuss the optimal balance between over- and under-cleaning., Comment: 21 pages, 16 figures. Changes made in response to reviewer report. Noted changes from V1: analysis now only performed on two foreground regions (excluding Galactic Plane and Barnard's loop since these were very high emission regions). General results and conclusions unchanged though. Version 2 accepted for publication in MNRAS

21 cm intensity mapping has emerged as a promising technique to map the large-scale structure of the Universe. However, the presence of foregrounds with amplitudes orders of magnitude larger than the cosmological signal constitutes a critical challenge. Here, we test the sparsity-based algorithm Generalised Morphological Component Analysis (GMCA) as a blind component separation technique for this class of experiments. We test the GMCA performance against realistic full-sky mock temperature maps that include, besides astrophysical foregrounds, also a fraction of the polarized part of the signal leaked into the unpolarized one, a very troublesome foreground to subtract, usually referred to as polarization leakage. To our knowledge, this is the first time the removal of such component is performed with no prior assumption. We assess the success of the cleaning by comparing the true and recovered power spectra, in the angular and radial directions. In the best scenario looked at, GMCA is able to recover the input angular (radial) power spectrum with an average bias of $\sim 5\%$ for $\ell>25$ ($20 - 30 \%$ for $k_{\parallel} \gtrsim 0.02 \,h^{-1}$Mpc), in the presence of polarization leakage. Our results are robust also when up to $40\%$ of channels are missing, mimicking a Radio Frequency Interference (RFI) flagging of the data. Having quantified the notable effect of polarisation leakage on our results, in perspective we advocate the use of more realistic simulations when testing 21 cm intensity mapping capabilities., Comment: 16 pages and 17 figures. This manuscript matches the published paper. Code and demonstrative notebooks are available at https://github.com/isab3lla/gmca4im and data-set to reproduce our results is available at https://doi.org/10.5281/zenodo.3991818

Context: The Planck data releases have provided the community with sub-millimetre and radio observations of the full-sky at unprecedented resolutions. We make use of the Planck 353, 545 and 857 GHz maps alongside the IRAS 3000 GHz map. These maps contain information on the cosmic microwave background (CMB), cosmic infrared background (CIB), extragalactic point sources and diffuse thermal dust emission. Aims: We aim to determine the modified black body (MBB) model parameters of thermal dust emission in total intensity and produce all sky maps of pure thermal dust, having separated this Galactic component from the CMB and CIB. Methods: This separation is completed using a new, sparsity-based, parametric method which we refer to as premise. The method comprises of three main stages: 1) filtering of the raw data to reduce the effect of the CIB on the MBB fit. 2) fitting an MBB model to the filtered data across super-pixels of various sizes determined by the algorithm itself and 3) refining these super-pixel estimates into full resolution maps of the MBB parameters. Results: We present our maps of MBB temperature, spectral index and optical depth at 5 arcmin resolution and compare our estimates to those of GNILC as well as the two-step MBB fit presented by the Planck collaboration in 2013. Conclusions: By exploiting sparsity we avoid the need for smoothing, enabling us to produce the first full resolution MBB parameter maps from intensity measurements of thermal dust emission.We consider the premise parameter estimates to be competitive with the existing state-of-the-art solutions, outperforming these methods within low signal-to-noise regions as we account for the CIB without removing thermal dust emission through over-smoothing., Comment: 18 pages, 22 figures, submitted to A&A