95 results on '"Iqbal Kabir Jahid"'
Search Results
2. Comparing effectiveness of physiotherapy versus drug management on fatigue, physical functioning, and episodic disability for myalgic encephalomyelitis in post-COVID-19 condition: a study protocol of randomized control trial
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Altaf Hossain Sarker, K.M. Amran Hossain, Md. Feroz Kabir, Sharmila Jahan, Md. Zahid Hossain, Tofajjal Hossain, and Iqbal Kabir Jahid
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Myalgic encephalomyelitis ,Post-COVID-19 condition ,Physiotherapy ,Drug ,Randomized controlled trial ,Medicine (General) ,R5-920 - Abstract
Abstract Background Physiotherapy interventions effectively improved fatigue and physical functioning in non-COVID patients with myalgic encephalomyelitis or chronic fatigue syndrome (ME/CFS). There is a research gap on the effectiveness of physiotherapy interventions versus drug management on ME/CFS in post-COVID-19 conditions (PCC). Methods We planned a three-arm prospective randomized control trial on 135 PCC cases with ME/CFS who are diagnosed between 20 November 2023 and 20 May 2024 from a population-based cohort. The study aims to determine the effectiveness of physiotherapy interventions as adapted physical activity and therapeutic exercise (APTE) provided in institution-based care versus telemedicine compared with drug management (DM). Participants will be assigned to three groups with the concealed location process and block randomization with an enrollment ratio of 1:1:1. The post-treatment evaluation will be employed after 2 months of interventions, and follow-up will be taken after 6 months post-intervention. The Chalder fatigue scale will measure the primary outcome of fatigue. SF-36 and the disability-adjusted life years (DALYs) will measure the secondary outcome of physical functioning and episodic disability. Discussion This study will address the research gap to determine the appropriate approach of physiotherapy or drug management for ME/CFS in PCC cases. The future direction of the study will contribute to developing evidence-based practice in post-COVID-19 condition rehabilitation. Trial registration The trial is registered prospectively from a primary Clinical Trial Registry side of WHO CTRI/2024/01/061987. Registered on 29 January 2024.
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- 2024
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3. Emergence of SARS-CoV-2 Variants Are Induced by Coinfections With Dengue
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Hassan M Al-Emran, Fazlur Rahman, Laxmi Sarkar, Prosanto Kumar Das, Provakar Mondol, Suriya Yesmin, Pipasha Sultana, Toukir Ahammed, Rasel Parvez, Md Shazid Hasan, Shovon Lal Sarkar, M Shaminur Rahman, Anamica Hossain, Mahmudur Rahman, Ovinu Kibria Islam, Md Tanvir Islam, Shireen Nigar, Selina Akter, A S M Rubayet Ul Alam, Mohammad Mahfuzur Rahman, Iqbal Kabir Jahid, and M Anwar Hossain
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Biology (General) ,QH301-705.5 - Abstract
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) that emerged in late 2019 has accumulated a series of point mutations and evolved into several variants of concern (VOCs), some of which are more transmissible and potentially more severe than the original strain. The most notable VOCs are Alpha, Beta, Gamma, Delta, and Omicron, which have spread to various parts of the world. This study conducted surveillance in Jashore, Bangladesh to identify the prevalence of SARS-CoV-2 coinfected with dengue virus and their genomic effect on the emergence of VOCs. A hospital-based COVID-19 surveillance from June to August, 2021 identified 9 453 positive patients in the surveillance area. The study enrolled 572 randomly selected COVID-19-positive patients, of which 11 (2%) had dengue viral coinfection. Whole genome sequences of SARS-CoV-2 were analyzed and compared between coinfection positive and negative group. In addition, we extracted 185 genome sequences from GISAID to investigate the cross-correlation function between SARS-CoV-2 mutations and VOC; multiple ARIMAX(p,d,q) models were developed to estimate the average number of amino acid (aa) substitution among different SARS-CoV-2 VOCs. The results of the study showed that the coinfection group had an average of 30.6 (±1.7) aa substitutions in SARS-CoV-2, whereas the dengue-negative COVID-19 group had that average of 25.6 (±1.8; P
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- 2024
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4. Clinical presentation of post-COVID pain and its impact on quality of life in long COVID patients: a cross-sectional household survey of SARS-CoV-2 cases in Bangladesh
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Md. Feroz Kabir, Khin Nyein Yin, Mohammad Saffree Jeffree, Fatimah Binti Ahmedy, Muhamad Faizal Zainudin, Ohnmar Htwe, Sharmila Jahan, Md. Zahid Hossain, K. M. Amran Hossain, Tofajjal Hossain, Iqbal Kabir Jahid, and Sonjit Kumar Chakrovorty
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Long COVID ,Pain ,Quality of life ,Bangladesh ,Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Background Pain is one of the prevalent Long COVID Symptoms (LCS). Pain interferes with the quality of life (QoL) and induces disease burden. Purpose The study aimed to elicit the clinical presentation of pain and determine the relationships between QoL and pain in LCS. Methods This household cross-sectional study of 12,925 SARS-CoV-2 cases between July and December 2021 was carried out in eight administrative divisions of Bangladesh. Stratified random sampling from the cases retrieved from the Ministry of Health was employed. Symptom screening was performed through COVID-19 Yorkshire Rehabilitation Scale, and long COVID was diagnosed according to World Health Organization (WHO) criteria. The analyses were conducted using IBM SPSS (Version 20.00). Results The prevalence of pain in long COVID was between 01 and 3.1% in the studied population. The study also found five categories of pain symptoms as LCS in Bangladesh: muscle pain 3.1% (95% CI; 2.4–3.8), chest pain 2.4% (95% CI; 1.8–3.1), joint pain 2.8% (95% CI; 2.2–2.3), headache 3.1% (95% CI; 2.4–3.8), and abdominal pain 0.3% (95% CI; 0.01–0.5). People with LCS as pain, multiple LCS, and longer duration of LCS had significantly lower quality of life across all domains of the WHOQOL-BREF (P
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- 2024
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5. Alternative genome sequencing approaches of SARS-CoV-2 using Ion AmpliSeq Technology
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Md. Shazid Hasan, M. Shaminur Rahman, Prosanto Kumar Das, A.S.M. Rubayet Ul Alam, Ovinu Kibria Islam, Hassan M. Al-Emran, M. Anwar Hossain, and Iqbal Kabir Jahid
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Alternative approaches of SARS-CoV-2 complete genome sequencing ,Science - Abstract
A thorough understanding of SARS-CoV-2 genetic features is compulsory to track the ongoing pandemic across multiple geographical locations of the world. Thermo Fisher Scientific USA has developed the Ion AmpliSeq SARS-CoV-2 Research Panel for the targeted sequencing of SARS-CoV-2 complete genome with high coverage and lower error rate. In this study an alternative approach of complete genome sequencing has been validated using different commercial sequencing kits to sequence the SARS-CoV-2. Amplification of cDNA with the SARS-CoV-2 primer pool was performed separately using two different master mixes: 2X environmental master mix (EM) and Platinum™ PCR SuperMix High Fidelity master mix (PM) instead of 5X Ion AmpliSeq™ HiFi Mix whereas NEBNext® Fast DNA Library Prep Set for Ion Torrent™ kit was used as an alternative to Ion AmpliSeq Library Kit Plus for other reagents. This study demonstrated a successful procedure to sequence the SARS-CoV-2 whole genome with average ∼2351 depth and 98.1% of total the reads aligned against the reference sequence (SARS-CoV-2, isolate Wuhan-Hu-1, complete genome). Although genome coverage varied, complete genomes were retrieved for both reagent sets with a reduced cost. This study proposed an alternative approach of high throughput sequencing using Ion torrent technology for the sequencing of SARS-CoV-2 in developing countries where sequencing facilities are low. This blended sequencing technique also offers a low cost protocol in developing countries like Bangladesh.
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- 2024
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6. Profile of long COVID symptoms needing rehabilitation: a cross-sectional household survey of 12,925 SARS-CoV-2 cases between July and December 2021 in Bangladesh
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Md. Feroz Kabir, Khin Nyein Yin, Mohammad Saffree Jeffree, Fatimah Binti Ahmedy, Sharmila Jahan, Md. Waliul Islam, Iqbal Kabir Jahid, Manoj Sivan, Sonjit Kumar Chakrovorty, and K. M. Amran Hossain
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Long COVID ,Epidemiology ,C19-YRS ,Rehabilitation ,Bangladesh ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background and aims : It is important to determine the profile of long COVID (LC) symptoms within the scope of rehabilitation in Bangladesh. This study’s objective was to estimate the newly experienced long COVID symptoms needing rehabilitation by determining the prevalence and spectrum of impairments due to LC in Bangladesh. Methods A Cross-sectional household survey of 12,925 COVID-19 patients confirmed by RT-PCR from 24 testing facilities in Bangladesh. LC was diagnosed according to WHO working group definition. COVID-19 Yorkshire Rehabilitation Scale (C19-YRS) was used to determine the symptom responses, symptom severity, new long COVID symptoms, and scope of rehabilitation. Results The population proportion of LC symptoms requiring rehabilitation interventions are 0.22 [95% CI, 0.20–0.24] in Bangladeshi people diagnosed with SARS-CoV-2. Among them, 0.08 [95% CI, 0.07–0.09] had mild, 0.07 [95% CI, 0.06–0.09] had moderate, and 0.05 [95% CI, 0.04–0.06] had severe long COVID symptoms (LCS). There was a significant positive correlation between LCS and functional disabilities (r = 0.889, p
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- 2023
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7. Community Coping Strategies for COVID-19 in Bangladesh: A Nationwide Cross-Sectional Survey
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K. M. Amran Hossain, Rubayet Shafin, Mst. Hosneara Yeasmin, Iqbal Kabir Jahid, Mohammad Anwar Hossain, Shohag Rana, Mohammad Feroz Kabir, Sanjit Kumar Chokrovorty, and Rafey Faruqui
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Bangladesh ,coping ,mental health ,resilience ,SARS-CoV-2 ,Specialties of internal medicine ,RC581-951 - Abstract
It is important to know the community coping strategies during the rapid uprise of a pandemic, as this helps to predict the consequences, especially in the mental health spectrum. This study aims to explore coping strategies used by Bangladeshi citizens during the major wave of the COVID-19 pandemic. Design: Prospective, cross-sectional survey of adults living in Bangladesh. Methods: Participants were interviewed for socio-demographic data and completed the Bengali-translated Brief-COPE Inventory. COPING indicators were categorized in four ways, such as approach, avoidant, humor, and religion. Results: Participants (N = 2001), aged 18 to 86 years, were recruited from eight administrative divisions within Bangladesh (mean age 31.85 ± 14.2 years). The male-to-female participant ratio was 53.4% (n = 1074) to 46.6% (n = 927). Higher scores were reported for approach coping styles (29.83 ± 8.9), with lower scores reported for avoidant coping styles (20.83 ± 6.05). Humor coping scores were reported at 2.68 ± 1.3, and religion coping scores at 5.64 ± 1.8. Both men and women showed similar coping styles. Multivariate analysis found a significant relationship between male gender and both humor and avoidant coping (p < 0.01). Male gender was found to be inversely related to both religion and approach coping (p < 0.01). Marital status and education were significantly related to all coping style domains (p < 0.01). The occupation was related to approach coping (p < 0.01). Rural and urban locations differed in participants’ coping styles (p < 0.01). Exploratory factor analysis revealed two cluster groups (factors 1 and 2) of mixed styles of coping. Conclusions: Participants in this study coped with the COVID-19 pandemic by utilizing mixed coping strategies. This study finds female gender, the married, elderly, and rural populations were adaptive to positive approaches to coping, whereas the male and educated population had the avoidant approach to coping.
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- 2023
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8. Evaluation of RT-PCR assays for detection of SARS-CoV-2 variants of concern
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Sourav Dutta Dip, Shovon Lal Sarkar, Md. Ali Ahasan Setu, Prosanto Kumar Das, Md. Hasan Ali Pramanik, A. S. M. Rubayet Ul Alam, Hassan M. Al-Emran, M. Anwar Hossain, and Iqbal Kabir Jahid
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Medicine ,Science - Abstract
Abstract Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) pandemic has been considered with great importance on correct screening procedure. The detection efficiency of recent variants of concern were observed by comparing 5 commercial RT-PCR kits and a SYBR-green method developed and validated in our laboratory. The RNA was extracted from nasopharyngeal samples from suspected COVID-19 patients and RT-PCR assay was performed according to the instruction of the respective manufacturers. The specificity and sensitivity of Maccura kit was 81.8% and 82.5%, A*Star kit was 100% and 75.4%, Da An Gene kit was 100% and 68.4%, Sansure kit was 54.5% and 91.2% and TaqPath kit was 100% and 70.2% respectively. Our in house SYBR-Green method showed a consistent detection result with 90.9% specificity and 91.2% sensitivity. We also found that detection kits targeting more genes showed better accuracy which facilitates less false positive results (
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- 2023
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9. Genomic analysis and in vivo efficacy of Pediococcus acidilactici as a potential probiotic to prevent hyperglycemia, hypercholesterolemia and gastrointestinal infections
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Hassan M. Al-Emran, Jannatul Ferdouse Moon, Md. Liton Miah, Nigar Sultana Meghla, Rine Christopher Reuben, Mohammad Jashim Uddin, Habiba Ibnat, Shovon Lal Sarkar, Pravas Chandra Roy, M. Shaminur Rahman, A. S. M. Rubayet Ul Alam, Ovinu Kibria Islam, and Iqbal Kabir Jahid
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Medicine ,Science - Abstract
Abstract Lactic acid bacteria are the well acknowledged probiotics that can cure a variety of diseases. In this study, we observed the in vivo potentials of Pediococcus to treat hyperglycemia, hypercholesterolemia and gastrointestinal infections. A total of 77 Lactobacillus were isolated from the milk of 10 cows and 10 goats, four of those strains inhibited both carbohydrates-hydrolyzing enzymes, α-glucosidase, and α-amylase. They all showed antagonistic effects on pathogenic E. coli and S. Typhimurium which were confirmed by performing pathogen challenge test and visualizing on Electron microscopy. 16S rRNA gene sequence identified that all four strains belong to Pediococcus genus which were further distinguished as Pediococcus acidilactici by pheS gene sequence. Whole genome sequence analysis revealed their non-pathogenic properties for human and the presence of probiotic genes responsible for stress resistance, immunomodulation, adhesion, metal and drug resistance. In vivo trial with diabetes-induced mice ascertained that all Pediococcus acidilactici had significant potentials to reduce elevated glucose and low-density lipoprotein level in blood. Interestingly, two out of four strains were significantly more effective (p
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- 2022
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10. Does post COVID-19 characterize new diseases and disabilities?
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Sonjit Kumar Chakrovorty, K.M. Amran Hossain, Rubayet Shafin, Shameem Ahammad, and Iqbal Kabir Jahid
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Public aspects of medicine ,RA1-1270 - Published
- 2023
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11. Development and validation of cost-effective one-step multiplex RT-PCR assay for detecting the SARS-CoV-2 infection using SYBR Green melting curve analysis
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Shovon Lal Sarkar, A. S. M. Rubayet Ul Alam, Prosanto Kumar Das, Md. Hasan Ali Pramanik, Hassan M. Al-Emran, Iqbal Kabir Jahid, and M. Anwar Hossain
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Medicine ,Science - Abstract
Abstract TaqMan probe-based commercial real-time (RT) PCR kits are expensive but most frequently used in COVID-19 diagnosis. The unprecedented scale of SARS-CoV-2 infections needs to meet the challenge of testing more persons at a reasonable cost. This study developed a simple and cost-effective alternative diagnostic method based on melting curve analysis of SYBR green multiplex assay targeting two virus-specific genes along with a host-specific internal control. A total of 180 randomly selected samples portioning into two subsets based on crude and high-quality RNA extraction were used to compare this assay with a nationwide available commercial kit (Sansure Biotech Inc., (Hunan, China)), so that we could analyze the variation and validity of this in-house developed method. Our customized-designed primers can specifically detect the viral RNA likewise Sansure. We separately optimized SYBR Green RT-PCR reaction of N, E, S, and RdRp genes based on singleplex melting curve analysis at the initial stage. After several rounds of optimization on multiplex assays of different primer combinations, the optimized method finally targeted N and E genes of the SARS-CoV-2 virus, together with the β-actin gene of the host as an internal control. Comparing with the Sansure commercial kit, our proposed assay provided up to 97% specificity and 93% sensitivity. The cost of each sample processing ranged between ~2 and ~6 USD depending on the purification level of extracted RNA template. Overall, this one-step and one-tube method can revolutionize the COVID-19 diagnosis in low-income countries.
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- 2022
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12. Novel mono‐ and multi‐strain probiotics supplementation modulates growth, intestinal microflora composition and haemato‐biochemical parameters in broiler chickens
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Rine Christopher Reuben, Shovon Lal Sarkar, Habiba Ibnat, Pravas Chandra Roy, and Iqbal Kabir Jahid
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broiler ,haemato‐biochemical parameter ,intestinal microbiota ,multi‐strain ,probiotic ,Veterinary medicine ,SF600-1100 - Abstract
Abstract Background The reduction of antimicrobial usage in food‐producing animals necessitates the intense search for novel alternatives, including new probiotic strains with more effective properties in improving growth performance and curtailing diseases in animals. Objective This study evaluated the effects of novel mono‐ and multi‐strain probiotics on the growth performance, intestinal microbiota and haemato‐biochemical parameters of broilers. Methods A total of 160 one‐day‐old Cobb 500 broilers were divided into eight treatment groups with two replicates consisting of (1) basal diet (negative control), (2) basal diet with antibiotic, colistin sulphate, (3) basal diet with commercial probiotic, PROMAX® (positive control), (4) basal diet with Pediococcus acidilactici I5, (5) basal diet with P. pentosaceus I13, (6) basal diet with Enterococcus faecium C14, (7) basal diet with Lactobacillus plantarum C16 and (8) basal diet with the combination of all the four probiotic strains. Birds were kept for 35 days and through oral gavage, 1 ml of 108 study probiotic strains administered on days 3–6, 14 and 18. Results Supplementation with P. pentosaceus I13, L. plantarum C16 or multi‐strain probiotics significantly (p
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- 2022
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13. Genomic analysis of SARS-CoV-2 variants of concern identified from the ChAdOx1 nCoV-19 immunized patients from Southwest part of Bangladesh
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Hassan M. Al-Emran, Md. Shazid Hasan, Md. Ali Ahasan Setu, M. Shaminur Rahman, ASM Rubayet Ul Alam, Shovon Lal Sarkar, Md. Tanvir Islam, Mir Raihanul Islam, Mohammad Mahfuzur Rahman, Ovinu Kibria Islam, Iqbal Kabir Jahid, and M. Anwar Hossain
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ChAdOx1 nCoV-19 ,COVID-19 ,South African variant ,B.1.351 ,Oxford-AstraZeneca ,Infectious and parasitic diseases ,RC109-216 ,Public aspects of medicine ,RA1-1270 - Abstract
Background: Bangladesh introduced ChAdOx1 nCoV-19 since February, 2021 and in six months, only a small population (12.8%) received either one or two dose of vaccination like other low-income countries. The COVID-19 infections were continued to roll all over the places although the information on genomic variations of SARS-CoV-2 between both immunized and unimmunized group was unavailable. The objective of this study was to compare the proportion of immune escaping variants between those groups. Methods: A total of 4718 nasopharygeal samples were collected from March 1 until April 15, 2021, of which, 834 (18%) were SARS-CoV-2 positive. The minimum sample size was calculated as 108 who were randomly selected for telephone interview and provided consent. The prevalence of SARS-CoV-2 variants and disease severity among both immunized and unimmunized groups was measured. A total of 63 spike protein sequences and 14 whole-genome sequences were performed from both groups and phylogenetic reconstruction and mutation analysis were compared. Results: A total of 40 respondents (37%, N = 108) received single-dose and 2 (2%) received both doses of ChAdOx1 nCoV-19 vaccine, which significantly reduce dry cough, loss of appetite and difficulties in breathing compared to none. There was no significant difference in hospitalization, duration of hospitalization or reduction of other symptoms like running nose, muscle pain, shortness of breathing or generalized weakness between immunized and unimmunized groups. Spike protein sequence assumed 21 (87.5%) B.1.351, one B.1.526 and two 20B variants in immunized group compared to 27 (69%) B.1.351, 5 (13%) B.1.1.7, 4 (10%) 20B, 2 B.1.526 and one B.1.427 variant in unimmunized group. Whole genome sequence analysis of 14 cases identified seven B.1.351 Beta V2, three B.1.1.7 Alpha V1, one B.1.526 Eta and the rest three 20B variants. Conclusion: Our study observed that ChAdOx1 could not prevent the new infection or severe COVID-19 disease outcome with single dose while the infections were mostly caused by B.1.351 variants in Bangladesh.
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- 2022
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14. Novel multi-strain probiotics reduces Pasteurella multocida induced fowl cholera mortality in broilers
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Rine Christopher Reuben, Shovon Lal Sarkar, Habiba Ibnat, Md. Ali Ahasan Setu, Pravas Chandra Roy, and Iqbal Kabir Jahid
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Medicine ,Science - Abstract
Abstract Pasteurella multocida causes fowl cholera, a highly contagious poultry disease of global concern, causing significant ecological and economic challenges to the poultry industry each year. This study evaluated the effects of novel multi-strain probiotics consisting of Lactobacillus plantarum, L. fermentum, Pediococcus acidilactici, Enterococcus faecium and Saccharomyces cerevisiae on growth performance, intestinal microbiota, haemato-biochemical parameters and anti-inflammatory properties on broilers experimentally challenged with P. multocida. A total of 120 birds were fed with a basal diet supplemented with probiotics (108 CFU/kg) and then orally challenged with 108 CFU/mL of P. multocida. Probiotics supplementation significantly (P
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- 2021
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15. Assessment of novel probiotic strains on growth, hematobiochemical parameters, and production costs of commercial broilers in Bangladesh
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S. M. Tanjil Shah, Md. Tanvir Islam, Rakiba Zabin, Pravas Chandra Roy, Nigar Sultana Meghla, and Iqbal Kabir Jahid
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cobb 500 broiler ,enterococcus faecium ,pediococcus acidilactici ,probiotics ,serum biochemistry ,Animal culture ,SF1-1100 ,Veterinary medicine ,SF600-1100 - Abstract
Background and Aim: The use of antibiotic growth promoters (AGPs) in the poultry industry has raised concern because of their potential harm to human health. Emerging evidence suggests that probiotics are a safer substitute, although little research has explored this in Bangladesh. We recently isolated local bacterial strains with probiotic properties. We aimed to determine their impact on the growth, hematobiochemical parameters, and production costs of broiler chicks relative to that of a commercial probiotic (CP) and AGP. Materials and Methods: Day-old male broiler chicks (Cobb 500, n=63) were divided equally into three experimental groups (three replicates per group and seven chicks per replicate). First group was fed a basal diet supplemented with the AGP, ciprofloxacin (CTL group), second group was fed a basal diet supplemented with the CP, Protexin® (CP group), and the third group was fed a basal diet supplemented with our isolated bacterial strains (study probiotic [SP] group) for 36 days. Body weight was recorded daily, and relative growth rate (RGR), feed conversion ratio (FCR), and organ weights and carcass yields were calculated at the study's end. Blood obtained on day 36 was used to determine the number of red blood cell (RBC) and white blood cells (WBCs), hemoglobin (Hb) concentration, packed cell volume, erythrocyte sedimentation rate, as well as levels of serum glucose, total and high-density lipoprotein (HDL) cholesterol, and triglycerides (TGs). Total production costs were estimated by summing the variable and fixed costs. Results: Chicks in both the CP and SP groups experienced significant decreases in blood glucose levels and significant increases in BW, RGR, FCR, levels of RBC and WBC, Hb concentration, and packed cell volume compared with those in the CTL group (p0.05) in levels of total cholesterol, TGs, and HDL in the SP and CP groups when compared to the CTL group. In addition, both CP and SP treatments resulted in significant (p
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- 2021
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16. Knowledge, Attitudes, Behavioural Practises, and Psychological Impact Relating to COVID-19 Among People Living With Spinal Cord Injury During In-Patient Rehabilitation in Bangladesh
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Mohammad Anwar Hossain, K. M. Amran Hossain, Mohamed Sakel, Md. Feroz Kabir, Karen Saunders, Rafey Faruqui, Mohammad Sohrab Hossain, Zakir Uddin, Manzur Kader, Lori Maria Walton, Md. Obaidul Haque, Rubayet Shafin, Sonjit Kumar Chakrovorty, and Iqbal Kabir Jahid
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spinal cord injury ,knowledge attitudes behavioural practices ,psychological impact ,depression ,anxiety ,stress ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
AimThe aim of this research is to focus on gaining an insight into the knowledge, attitudes, behavioural practises (KAP), and psychological impact relating to COVID-19 among the people living with spinal cord injury receiving in-patient rehabilitation.MethodsA prospective, cross-sectional survey of people with SCI (N = 207), who were in active in-patient rehabilitation from two tertiary SCI Rehabilitation Centres in Bangladesh. Data were collected via face-to-face interviews, after voluntary consent, using a pretested, language validated questionnaire on Knowledge, Attitude and Behavioural practises (KAP) and the Depression, Anxiety, Stress Scale (DASS-21). Ethical approval and trial registration were obtained prospectively.ResultsA total of 207 people with SCI responded, among which 87% were men and 13% were women, with a mean age of 34.18 ± 12.9 years. Within the sample group, people living with tetraplegia comprised 33.8%, and people living with paraplegia comprised 66.2%. Overall, 63.8% of the participants were diagnosed with an SCI categorised as ASIA-A. Overall, the “knowledge score” was 8.59 ± 2.3 out of 12, “depression” was 11.18 ± 8, “anxiety” was 7.72 ± 5.1, and “stress” was 9.32 ± 6.7 from a total of 21 scores each category. The strong correlation was between knowledge, DASS scores, and age (p < 0.05). In addition, there was a strong correlation between knowledge, gender (p < 0.05) and education (p < 0.01). Binary logistic regression found a stronger association of knowledge and DASS scores with gender, young age, illiteracy (p < 0.01), and rural residence (p < 0.05). A positive relationship was found between depression and anxiety scores (p < 0.01) and a moderate positive relationship was found between depression and stress scores (p < 0.01). A positive attitude was reported by the majority of participants (p < 0.05). In terms of behavioural practises, participants reported both self and caregiver had followed health advice with regard to consulting health professionals (65.7%), implementing isolation (63.8%), taking droplet precaution care (87.4%), and hygiene care (90.3%).ConclusionParticipants in this study reported high levels of knowledge, adoption of positive attitudes, and the practise of positive health advisory behaviours related to COVID-19 prevention procedures. However, high levels of depression, anxiety, and stress were also reported. Overall, women and younger participants were more likely to have high KAP, whereas those living in rural areas and with literacy challenges were less likely to report high knowledge scores.
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- 2022
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17. Health-related quality of life and coping strategies adopted by COVID-19 survivors: A nationwide cross-sectional study in Bangladesh.
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Mohammad Anwar Hossain, Rubayet Shafin, Md Shahoriar Ahmed, Md Shohag Rana, Lori Maria Walton, Veena Raigangar, Tasnim Ara, Md Aminul Hoque Rasel, Mohammad Sohrab Hossain, Md Feroz Kabir, Mir Raihanul Islam, Md Nazmul Hasan, Md Delowar Hossain, Farjana Sharmin Rumana, and Iqbal Kabir Jahid
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Medicine ,Science - Abstract
IntroductionThis study aims to investigate the health-related quality of life and coping strategies among COVID-19 survivors in Bangladesh.MethodsThis is a cross-sectional study of 2198 adult, COVID-19 survivors living in Bangladesh. Data were collected from previously diagnosed COVID-19 participants (confirmed by an RT-PCR test) via door-to-door interviews in the eight different divisions in Bangladesh. For data collection, Bengali-translated Brief COPE inventory and WHO Brief Quality of Life (WHO-QoLBREF) questionnaires were used. The data collection period was from October 2020 to March 2021.ResultsMales 72.38% (1591) were more affected by COVID-19 than females 27.62% (607). Age showed significant correlations (pConclusionSurvivors of COVID-19 showed mixed types of coping strategies; however, the predominant coping strategy was avoidant coping, followed by problem-focused coping, with emotion-focused coping reported as the least prevalent. Marital status, occupation, living area and co-morbidities showed a greater effect on QoL in all participants. This study represents the real scenario of nationwide health-associated quality of life and coping strategies during and beyond the Delta pandemic.
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- 2022
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18. Salmonella enterica Serovar Typhimurium and Enteritidis Isolated from Raw Shrimp in Bangladesh: An Investigation Based on Molecular Characteristics, Survival, Virulence, Antibiotic Resistance, and Biofilm Formation Attributes
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Prosanto Kumar Das, Ananta Mandal, Md. Mizanur Rahman, Shovon Lal Sarkar, Iqbal Kabir Jahid, Md. Anwar Hossain, A. S. M. Rubayet Ul Alam, and Pravas Chandra Roy
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Nutrition. Foods and food supply ,TX341-641 - Abstract
Shrimp is the white gold of Bangladesh, with the second-highest income source from exporting to foreign countries. Contamination with Salmonella spp. is now one of the significant issues for Bangladesh to export. Proper characterization of the salmonella pathogen is thus necessary to avoid undesirable losses due to the rejection of exported shrimp. In Bangladesh, the present condition of raw shrimp contamination with pathogenic Salmonella serovars and their survival/virulence properties was not adequately characterized. In this study, we collected 43 raw shrimps as samples from different farms in Jashore, Khulna, and Sathkhira regions. We then maintained standard cultural and biochemical protocols for isolating Salmonella strains, followed by the molecular identification of particular Salmonella serovars. The standard method for checking its credibility to form biofilm in 0–10% NaCl, tolerate acid/bile stress likewise in the gastrointestinal tract, and resist antimicrobial pressure was performed individually with the particular pathogenic strains. Our results successfully identified eleven Salmonella strains with three typhimurium serovars and three enteritidis serovars, which have biofilm-forming capability up to 4–8% NaCl, acid/bile habituation alike stomach/small intestine of humans, and resistance against necessary antibiotics generally used in treating human and poultry infection signifying the impending danger in the shrimp industry. While previous studies of Bangladesh successfully isolated Salmonella only presumptively, our research focused mainly on molecular characterization of the human Salmonella pathogen along with important survival and virulent attributes, such as biofilm formation, acid/bile tolerance, and antibiotic resistance of selected S. typhimurium and S. enteritidis strains. Further study with more sampling will be necessary to confer the transmission route of the pathogen from the natural reservoir to the shrimp industry.
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- 2022
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19. Initial reports of the SARS‐CoV‐2 Delta variant (B.1.617.2 lineage) in Bangladeshi patients: Risks of cross‐border transmission from India
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Md. Shazid Hasan, Md. Tanvir Islam, A. S. M. Rubayet Ul Alam, Shovon Lal Sarkar, M. Shaminur Rahman, Ovinu Kibria Islam, Md. Ali Ahsan Setu, Tanay Chakrovarty, Hassan M. Al‐Emran, Iqbal Kabir Jahid, and M. Anwar Hossain
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Medicine - Published
- 2021
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20. Isolation, characterization, and assessment of lactic acid bacteria toward their selection as poultry probiotics
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Rine Christopher Reuben, Pravas Chandra Roy, Shovon Lal Sarkar, Rubayet-Ul Alam, and Iqbal Kabir Jahid
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Probiotics ,Lactic acid bacteria ,Antagonistic activity ,Poultry ,Microbiology ,QR1-502 - Abstract
Abstract Background Probiotics are live microorganisms that, when administered in adequate amounts, confer a health benefit on the host, are now accepted as suitable alternatives to antibiotics in the control of animal infections and improving animal production. Lactic acid bacteria (LAB) with remarkable functional properties have been evaluated in different studies as possible probiotic candidates. The purpose of this study was to isolate, characterize and assess the potentials of LAB from poultry gastrointestinal tract as potential poultry probiotics. Results Potential LAB probiotics were isolated from broilers, characterized and evaluated for probiotic properties including antagonistic activity (against Escherichia coli, E. coli O157: H7, Enterococcus faecalis, Salmonella Typhimurium, S. Enteritidis and Listeria monocytogenes), survivability in simulated gastric juice, tolerance to phenol and bile salts, adhesion to ileum epithelial cells, auto and co-aggregation, hydrophobicity, α–glucosidase inhibitory activity, and antibiotic susceptibility tests. Most promising LAB strains with excellent probiotic potentials were identified by API 50 CHL and 16S rRNA sequencing as Lactobacillus reuteri I2, Pediococcus acidilactici I5, P. acidilactici I8, P. acidilactici c3, P. pentosaceus I13, and Enterococcus faecium c14. They inhibited all the pathogens tested with zones of inhibition ranging from 12.5 ± 0.71 to 20 ± 0 mm, and competitively excluded (P
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- 2019
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21. Predictors of unwillingness or inaccessibility to receive the COVID-19 vaccination among persons with disabilities in Bangladesh [version 1; peer review: 1 approved with reservations, 1 not approved]
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Md Zahid Hossain, Md Akter Hossain, Mohammad Yaqub Al Ansary, Veena Raigangar, Md Habibur Rahman, Ruksana Akter, Shameem Ahmed, Sharmila Jahan, Iqbal Kabir Jahid, and K. M. Amran Hossain
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Research Article ,Articles ,persons with disabilities ,Bangladesh ,COVID-19 ,vaccination - Abstract
Introduction Persons with disabilities (PWDs) are among the most vulnerable communities to suffer the serious consequences of COVID-19, and accepting COVID-19 vaccination is one of the recommended health advisories for them. Unwillingness to receive vaccines is a concerning issue, especially in the countries of Southeast Asia. The study aims to find out the COVID-19 vaccination rate of persons with disabilities (PWDs) in Bangladesh, the rate of unwillingnessor inaccessibility of vaccination for PWDs, and predict the possible reasons for unwillingness. Methods A descriptive cross-sectional survey of PWDs aged 12 years or more was conducted in 12 rehabilitation centers in Bangladesh between February 2022 and May 2022. A self-developed structured questionnaire on socio-demographic, disability and health indicators, acceptance and accessibility of COVID-19 vaccines, and knowledge and attitude towards vaccination was used for the survey. The study has been conducted according to the Strengthening the Reporting of Observational Studies in Epidemiology (STROBE) guidelines for a cross-sectional survey. Results With a 69% response rate, 241 PWDs participated in the study. PWDs with a spinal cord injury were the major respondents (62.7%). A total of 186 (77.2%) PWDs had taken one or more doses of COVID-19 vaccines of three doses supplied, and 55 (22.8%) were unwilling to have a vaccination. All vaccine recipients reported good accessibility to vaccination booths. The predictive factors of unwillingness were spinal cord injury type of disability ( OR .36, POR .44, POR .78, POR.24, P Conclusion More than one-fifth of the persons with disabilities aged between 12 and 80 years were unwilling to receive the COVID-19 vaccination despite the accessibility of information and availability of the COVID-19 vaccine centers, mainly due to poor knowledge and mobility issues.
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- 2022
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22. Comparison of the effects of therapeutic exercise with either an educational booklet or vitamin-D3 supplement in the management of chronic low back pain: study protocol for an assessor blinded multicenter randomized clinical trial [version 1; peer review: 1 approved with reservations, 1 not approved]
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Muhammad Shahidul Islam, K. M. Amran Hossain, Md. Sohrab Hossain, Rashida Parvin, Nadia Afrin Urme, Veena Raigangar, Iqbal Kabir Jahid, Md. Feroz Kabir, and Md. Ashrafuzzaman Zahid
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Study Protocol ,Articles ,Chronic Low Back Pain ,Therapeutic exercise ,Vitamin-D3 supplement ,Booklet - Abstract
Background: It is important to know the best intervention approach to replenish serum vitamin D levels along with therapeutic interventions for chronic low back pain (CLBP) patients. From the researcher’s knowledge, no study compared “vitamin D supplement” or “booklet education on sun exposure, nutrition and lifestyle” with therapeutic exercise for CLBP cases. Researchers hypothesize that multidimensional comprehensive management of therapeutic exercise and an education booklet (TEB) on sun exposure, nutrition, and lifestyle might be superior to therapeutic exercise and oral vitamin D supplement (TED) for CLBP patients with vitamin D deficiency. Methods: We planned for an assessor-blinded two-arm multicenter Randomized Clinical Trial (RCT) protocol to compare the efficacy of TEB compared to TED for CLBP patients with vitamin D deficiency at 2 months and 6 months after baseline recruitment in designated centers in Dhaka city. The primary outcome measures will include pain by Brief Pain Inventory (BPI), and serum vitamin D3 level and secondary outcome measures will include disability by Ronald Morris Disability Questionnaire (RMDQ). Discussion: This study will provide evidence for an appropriate prescription for the management of CLBP patients having vitamin D deficiency. Registration: Clinical Trials Registry India ( CTRI/2022/11/047074).
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- 2022
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23. Emergence of SARS-CoV-2 Variants of Concern Induced by Dengue Viral Coinfections
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Hassan M. Al-Emran, Fazlur Rahman, Laxmi Sarkar, Prosanto Kumar Das, Provakar Mondol, Suriya Yesmin, Pipasha Sultana, Toukir Ahammed, Rasel Parvez, Md Shazid Hasan, Shovon Lal Sarkar, M. Shaminur Rahman, Anamica Hossain, Mahmudur Rahman, Ovinu Kibria Islam, Md. Tanvir Islam, Shireen Nigar, Selina Akter, ASM Rubayet Ul Alam, Mohammad Mahfuzur Rahman, Iqbal Kabir Jahid, and Md. Anwar Hossain
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- 2023
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24. Prebiotics, probiotics and postbiotics for sustainable poultry production
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Pravas Chandra Roy, M. Anwar Hossain, Shovon Lal Sarkar, Azraf Anwar, Iqbal Kabir Jahid, and Rine Christopher Reuben
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business.industry ,Production (economics) ,Animal Science and Zoology ,Biology ,business ,Biotechnology - Published
- 2021
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25. Relative expression of proinflammatory molecules in COVID‐19 patients who manifested disease severities
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M. Anwar Hossain, M Touhidul Islam, Selina Akter, Iqbal Kabir Jahid, Habiba Ibnat, Sourav Dutta Dip, Ali Ahasan Setu, Sm Tanjil Shah, and Shireen Nigar
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Adult ,Male ,Chemokine ,proinflammatory molecules ,T cell ,chemokines ,Severity of Illness Index ,Proinflammatory cytokine ,03 medical and health sciences ,0302 clinical medicine ,Immune system ,COVID‐19 ,Virology ,Humans ,Medicine ,Macrophage ,030212 general & internal medicine ,Research Articles ,Bangladesh ,biology ,SARS-CoV-2 ,business.industry ,Monocyte ,COVID-19 ,Middle Aged ,Viral Load ,cytokines ,relative expression ,Infectious Diseases ,medicine.anatomical_structure ,Immunology ,biology.protein ,disease severity ,Female ,030211 gastroenterology & hepatology ,Tumor necrosis factor alpha ,business ,Viral load ,Research Article - Abstract
Aggressive immune response, due to overexpressed proinflammatory molecules, has been characterized in coronavirus disease 2019 (COVID‐19) patients. Some of those mediators have a dual and opposite role on immune systems at play behind differential disease severities. We investigated the expression of some cytokines and chemokines in COVID‐19 patients in Bangladesh. We diagnosed the patients by detecting severe acute respiratory syndrome coronavirus 2 RNA in nasal swab samples by the real‐time RT‐PCR method. Thirty adult patients were preselected based on their disease severities and grouped into mild, moderate, and severe cases. Nine healthy volunteers participated in this study as a control. Relative expression of nine cytokines/chemokine in total leukocytes was semi‐quantified in SYBRgreen‐based real‐time quantitative reverse‐transcriptase polymerase chain reaction. We performed statistical tests on transformed log data using SPSS 24.0. At the onset of symptoms (Day 1), angiotensin‐converting enzyme 2 (ACE2) (p 0.05) were upregulated in all COVID‐19 groups, although the expression levels did not significantly correlate with disease severities. However, expressions of IL‐6, monocyte chemotactic protein‐1, macrophage inflammatory protein‐1α, tumor necrosis factor‐α (TNF‐α), RANTES (regulated upon activation, normal T cell expressed and secreted), and ACE2, on Day 14, were positively correlated with disease severities. Relative viral load at Day 1 showed no significant correlation with cytokine expression but had a significant positive correlation with RANTES and ACE2 expression on Day 14 (p
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- 2021
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26. A rapid and cost‐effective multiplex ARMS‐PCR method for the simultaneous genotyping of the circulating SARS‐CoV‐2 phylogenetic clades
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Md. Iqbal Kabir Jahid, Mohammad Tanvir Islam, Amirul Alam, Tanay Chakrovarty, Hassan M. Al-Emran, Ovinu Kibria Islam, Md. Tawyabur, Najmuj Sakib, Mohammad Anwar Hossain, and Mohammad Shazid Hasan
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Genotype ,Cost-Benefit Analysis ,Biology ,SARS‐CoV‐2 ,law.invention ,ARMS ,03 medical and health sciences ,symbols.namesake ,0302 clinical medicine ,COVID‐19 ,law ,Virology ,Multiplex polymerase chain reaction ,Humans ,Multiplex ,030212 general & internal medicine ,Genotyping ,Phylogeny ,Research Articles ,Polymerase chain reaction ,Genetics ,Sanger sequencing ,clade ,Phylogenetic tree ,SARS-CoV-2 ,COVID-19 ,Reproducibility of Results ,multiplex PCR ,mutations ,Infectious Diseases ,COVID-19 Nucleic Acid Testing ,Mutation ,symbols ,030211 gastroenterology & hepatology ,Primer (molecular biology) ,Multiplex Polymerase Chain Reaction ,Research Article - Abstract
Tracing the globally circulating severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2) phylogenetic clades by high‐throughput sequencing is costly, time‐consuming, and labor‐intensive. We here propose a rapid, simple, and cost‐effective amplification refractory mutation system (ARMS)‐based multiplex reverse‐transcription polymerase chain reaction (PCR) assay to identify six distinct phylogenetic clades: S, L, V, G, GH, and GR. Our multiplex PCR is designed in a mutually exclusive way to identify V–S and G–GH–GR clade variants separately. The pentaplex assay included all five variants and the quadruplex comprised of the triplex variants alongside either V or S clade mutations that created two separate subsets. The procedure was optimized with 0.2–0.6 µM primer concentration, 56–60°C annealing temperature, and 3–5 ng/µl complementary DNA to validate on 24 COVID‐19‐positive samples. Targeted Sanger sequencing further confirmed the presence of the clade‐featured mutations with another set of primers. This multiplex ARMS‐PCR assay is a fast, low‐cost alternative and convenient to discriminate the circulating phylogenetic clades of SARS‐CoV‐2., Highlights Multiplex ARMS‐PCR (amplification refractory mutation system‐polymerase chain reaction) method for genotyping major severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2 clades).Identify the mutated region of circulating phylogenetically SARS‐CoV‐2 clades.PCR conditions were optimized and validated to identify V–S and G–GH–GR clade.
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- 2021
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27. Assessment of novel probiotic strains on growth, hematobiochemical parameters, and production costs of commercial broilers in Bangladesh
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Md. Tanvir Islam, Rakiba Zabin, Nigar Sultana Meghla, SM Tanjil Shah, Iqbal Kabir Jahid, and Pravas Chandra Roy
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040301 veterinary sciences ,Veterinary medicine ,Biology ,Feed conversion ratio ,SF1-1100 ,law.invention ,0403 veterinary science ,Probiotic ,chemistry.chemical_compound ,Animal science ,law ,SF600-1100 ,medicine ,Pediococcus acidilactici, probiotics ,General Veterinary ,medicine.diagnostic_test ,Cholesterol ,business.industry ,0402 animal and dairy science ,Broiler ,04 agricultural and veterinary sciences ,Poultry farming ,040201 dairy & animal science ,cobb 500 broiler ,Animal culture ,Red blood cell ,medicine.anatomical_structure ,serum biochemistry ,chemistry ,probiotics ,Erythrocyte sedimentation rate ,Hemoglobin ,business ,enterococcus faecium ,pediococcus acidilactici ,Research Article - Abstract
Background and Aim: The use of antibiotic growth promoters (AGPs) in the poultry industry has raised concern because of their potential harm to human health. Emerging evidence suggests that probiotics are a safer substitute, although little research has explored this in Bangladesh. We recently isolated local bacterial strains with probiotic properties. We aimed to determine their impact on the growth, hematobiochemical parameters, and production costs of broiler chicks relative to that of a commercial probiotic (CP) and AGP. Materials and Methods: Day-old male broiler chicks (Cobb 500, n=63) were divided equally into three experimental groups (three replicates per group and seven chicks per replicate). First group was fed a basal diet supplemented with the AGP, ciprofloxacin (CTL group), second group was fed a basal diet supplemented with the CP, Protexin® (CP group), and the third group was fed a basal diet supplemented with our isolated bacterial strains (study probiotic [SP] group) for 36 days. Body weight was recorded daily, and relative growth rate (RGR), feed conversion ratio (FCR), and organ weights and carcass yields were calculated at the study's end. Blood obtained on day 36 was used to determine the number of red blood cell (RBC) and white blood cells (WBCs), hemoglobin (Hb) concentration, packed cell volume, erythrocyte sedimentation rate, as well as levels of serum glucose, total and high-density lipoprotein (HDL) cholesterol, and triglycerides (TGs). Total production costs were estimated by summing the variable and fixed costs. Results: Chicks in both the CP and SP groups experienced significant decreases in blood glucose levels and significant increases in BW, RGR, FCR, levels of RBC and WBC, Hb concentration, and packed cell volume compared with those in the CTL group (p0.05) in levels of total cholesterol, TGs, and HDL in the SP and CP groups when compared to the CTL group. In addition, both CP and SP treatments resulted in significant (p
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- 2021
28. Probiotic Potential of Pediococcus acidilactici and Enterococcus faecium Isolated from Indigenous Yogurt and Raw Goat Milk
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Md. Anwar Hossain, Shovon Lal Sarkar, Sharmin Akter Monika, Pravas Chandra Roy, Iqbal Hossain, Iqbal Kabir Jahid, and Santonu Kumar Sanyal
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biology ,medicine.drug_class ,Microorganism ,Antibiotics ,food and beverages ,Pediococcus acidilactici ,Pathogenic bacteria ,biology.organism_classification ,medicine.disease_cause ,Applied Microbiology and Biotechnology ,Microbiology ,Lactic acid ,law.invention ,chemistry.chemical_compound ,Probiotic ,chemistry ,law ,medicine ,Food science ,Bacteria ,Biotechnology ,Enterococcus faecium - Abstract
Probiotics are live microorganisms that, when administered in adequate amounts, confer health benefits to the host. This study was conducted for the isolation of potential lactic acid bacteria (LAB) with probiotic properties from goat milk and yogurt. Several tests were conducted in vitro using the standard procedures for evaluating the inhibitory spectra of LAB against pathogenic bacteria; tolerance to NaCl, bile salt, and phenol; hemolytic, milk coagulation, and bile salt hydrolase activities; gastrointestinal transit tolerance; adhesion properties; and antibiotic susceptibility. Among 40 LAB strains screened according to culture characteristics, five isolates exhibited antagonistic properties. Three were identified as Pediococcus acidilactici, and two were identified as Enterococcus faecium, exploiting 16S rRNA gene sequencing. All the isolates succeeded in the gastrointestinal transit tolerance assay and successively colonized mucosal epithelial cells. Based on the results of these in vitro assays, both P. acidilactici and E. faecium can be considered as potential probiotic candidates.
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- 2020
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29. Characterization and evaluation of lactic acid bacteria from indigenous raw milk for potential probiotic properties
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Rine Christopher Reuben, Shovon Lal Sarkar, Iqbal Kabir Jahid, A. S. M. Rubayet Ul Alam, and Pravas Chandra Roy
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Limosilactobacillus fermentum ,Lactobacillus casei ,Lactobacillus paracasei ,Lactobacillus fermentum ,Enterococcus faecalis ,law.invention ,Probiotic ,Bacteriocins ,Lactobacillales ,law ,Lactobacillus ,Genetics ,Animals ,Humans ,Food science ,Gastric Juice ,biology ,Goats ,Probiotics ,food and beverages ,Raw milk ,biology.organism_classification ,Lacticaseibacillus casei ,Milk ,Cattle ,Female ,Animal Science and Zoology ,Lactobacillus plantarum ,Food Science - Abstract
Raw milk contains wide microbial diversity, composed mainly of lactic acid bacteria (LAB), which are used as probiotics in both human and animal husbandry. We isolated, characterized, and evaluated LAB from indigenous Bangladeshi raw milk to assess probiotic potential, including antagonistic activity (against Escherichia coli O157: H7, Enterococcus faecalis, Salmonella Typhimurium, Salmonella Enteritidis, and Listeria monocytogenes), survivability in simulated gastric juice, tolerance to phenol and bile salts, adhesion to ileum epithelial cells, auto- and co-aggregation, hydrophobicity, α-glucosidase inhibitory activity, and antibiotic susceptibility tests. The 4 most promising LAB strains showed probiotic potential and were identified as Lactobacillus casei, Lactobacillus plantarum (which produced plantaricin EF), Lactobacillus fermentum, and Lactobacillus paracasei. These strains inhibited all pathogens tested at various degrees, and competitively excluded pathogens with viable counts of 3.0 to 6.0 log cfu/mL. Bacteriocin, organic acids, and low-molecular-weight substances were mainly responsible for antimicrobial activity by the LAB strains. All 4 LAB strains were resistant to oxacillin and 3 were resistant to vancomycin and streptomycin, with multiple antibiotic resistance indices >0.2. After further in vivo evaluation, these LAB strains could be considered probiotic candidates with application in the food industry.
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- 2020
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30. Evaluation of RT-PCR assays for detection of SARS-CoV-2 variants of concern
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Sourav Dutta Dip, Shovon Lal Sarkar, Md. Ali Ahasan Setu, Md. Hasan Ali Pramanik, Prosanto Kumar Das, A. S. M. Rubayet Ul Alam, Hassan M. Al-Emran, M. Anwar Hossain, and Iqbal Kabir Jahid
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Multidisciplinary - Abstract
Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) pandemic has been considered with great importance on correct screening procedure. The detection efficiency of recent variants of concern were observed by comparing 5 commercial RT-PCR kits and a SYBR-green method developed and validated in our laboratory. The RNA was extracted from nasopharyngeal samples from suspected COVID-19 patients and RT-PCR assay was performed according to the instruction of the respective manufacturers. The specificity and sensitivity of Maccura kit was 81.8% and 82.5%, A*Star kit was 100% and 75.4%, Da An Gene kit was 100% and 68.4%, Sansure kit was 54.5% and 91.2% and TaqPath kit was 100% and 70.2% respectively. Our in house SYBR-Green method showed a consistent detection result with 90.9% specificity and 91.2% sensitivity. We also found that detection kits targeting more genes showed better accuracy which facilitates less false positive results (
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- 2022
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31. A 30-day follow-up study on the prevalence of SARS-COV-2 genetic markers in wastewater from the residence of COVID-19 patient and comparison with clinical positivity
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Md. Aminul Islam, Md. Arifur Rahman, Md. Jakariya, Newaz Mohammed Bahadur, Foysal Hossen, Sanjoy Kumar Mukharjee, Mohammad Salim Hossain, Atkeeya Tasneem, Md. Atiqul Haque, Francesco Sera, Iqbal Kabir Jahid, Tanvir Ahmed, Mohammad Nayeem Hasan, Md. Tahmidul Islam, Amzad Hossain, Ruhul Amin, Ananda Tiwari, Md Didar-Ul-Alam, Kuldeep Dhama, Prosun Bhattacharya, Firoz Ahmed, Zoonotic Antimicrobial Resistance, Food Hygiene and Environmental Health, and Departments of Faculty of Veterinary Medicine
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11832 Microbiology and virology ,Genetic Markers ,SARS-CoV-2 variants ,Environmental Engineering ,Clinical samples ,SARS-CoV-2 ,COVID-19 ,Wastewater-based epidemiology (WBE) ,Wastewater ,Pollution ,Clinical diagnosis ,3142 Public health care science, environmental and occupational health ,COVID-19 hotspots ,Wastewater samples ,Humans ,RNA, Viral ,Environmental Chemistry ,Waste Management and Disposal ,Follow-Up Studies - Abstract
Wastewater based epidemiology (WBE) is an important tool to fight against COVID-19 as it provides insights into the health status of the targeted population from a small single house to a large municipality in a cost-effective, rapid, and non-invasive way. The implementation of wastewater based surveillance (WBS) could reduce the burden on the public health system, management of pandemics, help to make informed decisions, and protect public health. In this study, a house with COVID-19 patients was targeted for monitoring the prevalence of SARS-CoV-2 genetic markers in wastewa-ter samples (WS) with clinical specimens (CS) for a period of 30 days. RT-qPCR technique was employed to target non-structural (ORF1ab) and structural-nucleocapsid (N) protein genes of SARS-CoV-2, according to a validated experimental protocol. Physiological, environmental, and biological parameters were also measured following the American Public Health Association (APHA) standard protocols. SARS-CoV-2 viral shedding in wastewater peaked when the highest number of COVID-19 cases were clinically diagnosed. Throughout the study period, 7450 to 23,000 gene copies/1000 mL were detected, where we identified 47 % (57/120) positive samples from WS and 35 % (128/360) from CS. When the COVID-19 patient number was the lowest (2), the highest CT value (39.4; i.e., lowest copy number) was identified from WS. On the other hand, when the COVID-19 patients were the highest (6), the lowest CT value (25.2 i.e., highest copy numbers) was obtained from WS. An advance signal of increased SARS-CoV-2 viral load from the COVID-19 patient was found in WS earlier than in the CS. Using customized primer sets in a traditional PCR approach, we confirmed that all SARS-CoV-2 variants identified in both CS and WS were Delta variants (B.1.617.2). To our knowledge, this is the first follow-up study to determine a temporal relationship be-tween COVID-19 patients and their discharge of SARS-CoV-2 RNA genetic markers in wastewater from a single house including all family members for clinical sampling from a developing country (Bangladesh), where a proper sewage system is lacking. The salient findings of the study indicate that monitoring the genetic markers of the SARS-CoV-2 virus in wastewater could identify COVID-19 cases, which reduces the burden on the public health system during COVID-19 pandemics.
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- 2023
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32. Contributors
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Hussein Hasan Abulreesh, Iqbal Ahmad, Sreerup Banerjee, Heena Chandel, Susmita Datta, Surajit Debnath, Vidyut Dey, Huma Jafri, Iqbal Kabir Jahid, Sanjay Kumar, Moumita Majumdar, Tarun Kumar Misra, Oindrilla Mukherjee, Soma Nag, Titas Nath, Ayantika Pal, Faizan Abul Qais, Rine Christopher Reuben, Dijendra N. Roy, Praneet Kumar Sahoo, null Samreen, Shovon Lal Sarkar, Chirantana Sengupta, Saroj Sharma, Shraddha Sharma, Bivash Sinha, Vishvanath Tiwari, Madan L. Verma, and Bo Wang
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- 2022
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33. Predictors of and Factors Associated with Novel Post COVID Symptoms in the Musculoskeletal, Functional, and Cognitive Domains for Vaccinated Delta-Variant Survivors: A Descriptive Survey of a Nationwide Prospective Inception Cohort in Bangladesh
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Sonjit Kumar Chakrovorty, K. M. Amran Hossain, Mohammad Anwar Hossain, Shameem Ahammad, Md. Feroz Kabir, Rubayet Shafin, Manoj Sivan, Mohammed Mamun, Firoj Al Mamun, and Iqbal Kabir Jahid
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History ,Polymers and Plastics ,Business and International Management ,Industrial and Manufacturing Engineering - Published
- 2022
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34. Multi-species biofilms: Friends or foe to the human?
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Rine Christopher Reuben, Shovon Lal Sarkar, and Iqbal Kabir Jahid
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- 2022
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35. Dominant clade‐featured SARS‐CoV‐2 co‐occurring mutations reveal plausible epistasis: An in silico based hypothetical model
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A. S. M. Rubayet Ul Alam, Shafi Mahmud, M. Anwar Hossain, Ovinu Kibria Islam, Hassan M. Al-Emran, Shazid Hasan, Keith A. Crandall, Iqbal Kabir Jahid, and Mir Raihanul Islam
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Translational efficiency ,In silico ,viruses ,Mutant ,Biology ,medicine.disease_cause ,SARS‐CoV‐2 ,COVID‐19 ,Virology ,medicine ,Humans ,Prospective Studies ,Research Articles ,Retrospective Studies ,Genetics ,Mutation ,SARS-CoV-2 ,clades ,RNA ,COVID-19 ,Epistasis, Genetic ,RNA-Dependent RNA Polymerase ,Phenotype ,co‐occurring mutations ,fitness ,Molecular Docking Simulation ,virulence ,infection paradox ,Infectious Diseases ,Viral replication ,Spike Glycoprotein, Coronavirus ,Epistasis ,Research Article - Abstract
Severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2) has evolved into eight fundamental clades with four of these clades (G, GH, GR, and GV) globally prevalent in 2020. To explain plausible epistatic effects of the signature co‐occurring mutations of these circulating clades on viral replication and transmission fitness, we proposed a hypothetical model using in silico approach. Molecular docking and dynamics analyses showed the higher infectiousness of a spike mutant through more favorable binding of G614 with the elastase‐2. RdRp mutation p.P323L significantly increased genome‐wide mutations (p, Highlights Most dominant spike mutation favors elastase‐2 binding.The polymerase mutant (P323L) virus may speed up replication that corresponds to higher mutations.ORF3a viroporin substitution (Q57H) decreases ion permeability.N protein mutation (RG203‐204KR) can increase nucleocapsid stability and help evade immunity.Co‐occurring mutations might modulate viral replication and transmission fitness through epistasis.
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- 2021
36. Author response for 'Novel mono‐ and multi‐strain probiotics supplementation modulates growth, intestinal microflora composition and haemato‐biochemical parameters in broiler chickens'
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null Rine Christopher Reuben, null Shovon Lal Sarkar, null Habiba Ibnat, null Pravas Chandra Roy, and null Iqbal Kabir Jahid
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- 2021
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37. Genomic analysis of SARS-CoV-2 variants of concern identified from the ChAdOx1 nCoV-19 immunized patients from Southwest part of Bangladesh
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Hassan M. Al-Emran, Md. Shazid Hasan, Md. Ali Ahasan Setu, M. Shaminur Rahman, ASM Rubayet Ul Alam, Shovon Lal Sarkar, Md. Tanvir Islam, Mir Raihanul Islam, Mohammad Mahfuzur Rahman, Ovinu Kibria Islam, Iqbal Kabir Jahid, and M. Anwar Hossain
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Bangladesh ,COVID-19 Vaccines ,South African variant ,SARS-CoV-2 ,Public Health, Environmental and Occupational Health ,COVID-19 ,B.1.351 ,Oxford-AstraZeneca ,Infectious and parasitic diseases ,RC109-216 ,General Medicine ,Genomics ,Infectious Diseases ,ChAdOx1 nCoV-19 ,Humans ,Original Article ,Public aspects of medicine ,RA1-1270 ,Phylogeny - Abstract
Background: Bangladesh introduced ChAdOx1 nCoV-19 since February, 2021 and in six months, only a small population (12.8%) received either one or two dose of vaccination like other low-income countries. The COVID-19 infections were continued to roll all over the places although the information on genomic variations of SARS-CoV-2 between both immunized and unimmunized group was unavailable. The objective of this study was to compare the proportion of immune escaping variants between those groups. Methods: A total of 4718 nasopharygeal samples were collected from March 1 until April 15, 2021, of which, 834 (18%) were SARS-CoV-2 positive. The minimum sample size was calculated as 108 who were randomly selected for telephone interview and provided consent. The prevalence of SARS-CoV-2 variants and disease severity among both immunized and unimmunized groups was measured. A total of 63 spike protein sequences and 14 whole-genome sequences were performed from both groups and phylogenetic reconstruction and mutation analysis were compared. Results: A total of 40 respondents (37%, N = 108) received single-dose and 2 (2%) received both doses of ChAdOx1 nCoV-19 vaccine, which significantly reduce dry cough, loss of appetite and difficulties in breathing compared to none. There was no significant difference in hospitalization, duration of hospitalization or reduction of other symptoms like running nose, muscle pain, shortness of breathing or generalized weakness between immunized and unimmunized groups. Spike protein sequence assumed 21 (87.5%) B.1.351, one B.1.526 and two 20B variants in immunized group compared to 27 (69%) B.1.351, 5 (13%) B.1.1.7, 4 (10%) 20B, 2 B.1.526 and one B.1.427 variant in unimmunized group. Whole genome sequence analysis of 14 cases identified seven B.1.351 Beta V2, three B.1.1.7 Alpha V1, one B.1.526 Eta and the rest three 20B variants. Conclusion: Our study observed that ChAdOx1 could not prevent the new infection or severe COVID-19 disease outcome with single dose while the infections were mostly caused by B.1.351 variants in Bangladesh.
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- 2021
38. Multispecies Interactions in Biofilms and Implications to Safety of Drinking Water Distribution System
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Pravas Chandra Roy, Shovon Lal Sarkar, Rine Christopher Reuben, Iqbal Kabir Jahid, and Sang-Do Ha
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Chemistry ,Multispecies biofilms ,Microorganism ,Biofilm ,biochemical phenomena, metabolism, and nutrition ,Applied Microbiology and Biotechnology ,Microbiology ,Distribution system ,Potable water ,Quorum sensing ,Extracellular polymeric substance ,Single species ,Environmental chemistry ,Biotechnology - Abstract
In the aquatic environment, microorganisms are predominantly organized as biofilms. Biofilms are formed by the aggregation of microbial cells and are surrounded by a matrix of extracellular polymeric substances (EPS) secreted by the microbial cells. Biofilms are attached to various surfaces, such as the living tissues, indwelling medical devices, and piping of the industrial potable water system. Biofilms formed from a single species has been extensively studied. However, there is an increased research focus on multispecies biofilms in recent years. It is important to assess the microbial mechanisms underlying the regulation of multispecies biofilm formation to determine the drinking water microbial composition. These mechanisms contribute to the predominance of the best-adapted species in an aquatic environment. This review focuses on the interactions in the multispecies biofilms, such as coaggregation, co-metabolism, cross-species protection, jamming of quorum sensing, lateral gene transfer, synergism, and antagonism. Further, this review explores the dynamics and the factors favoring biofilm formation and pathogen transmission within the drinking water distribution systems. The understanding of the physiology and biodiversity of microbial species in the biofilm may aid in the development of novel biofilm control and drinking water disinfection processes.
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- 2019
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39. Knowledge, Attitudes, Behavioural Practises, and Psychological Impact Relating to COVID-19 Among People Living With Spinal Cord Injury During In-Patient Rehabilitation in Bangladesh
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Mohammad Anwar Hossain, K. M. Amran Hossain, Mohamed Sakel, Md. Feroz Kabir, Karen Saunders, Rafey Faruqui, Mohammad Sohrab Hossain, Zakir Uddin, Manzur Kader, Lori Maria Walton, Md. Obaidul Haque, Rubayet Shafin, Sonjit Kumar Chakrovorty, and Iqbal Kabir Jahid
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knowledge attitudes behavioural practices ,stress ,Neurology ,depression ,Neurology (clinical) ,Neurology. Diseases of the nervous system ,psychological impact ,anxiety ,RC346-429 ,spinal cord injury - Abstract
AimThe aim of this research is to focus on gaining an insight into the knowledge, attitudes, behavioural practises (KAP), and psychological impact relating to COVID-19 among the people living with spinal cord injury receiving in-patient rehabilitation.MethodsA prospective, cross-sectional survey of people with SCI (N = 207), who were in active in-patient rehabilitation from two tertiary SCI Rehabilitation Centres in Bangladesh. Data were collected via face-to-face interviews, after voluntary consent, using a pretested, language validated questionnaire on Knowledge, Attitude and Behavioural practises (KAP) and the Depression, Anxiety, Stress Scale (DASS-21). Ethical approval and trial registration were obtained prospectively.ResultsA total of 207 people with SCI responded, among which 87% were men and 13% were women, with a mean age of 34.18 ± 12.9 years. Within the sample group, people living with tetraplegia comprised 33.8%, and people living with paraplegia comprised 66.2%. Overall, 63.8% of the participants were diagnosed with an SCI categorised as ASIA-A. Overall, the “knowledge score” was 8.59 ± 2.3 out of 12, “depression” was 11.18 ± 8, “anxiety” was 7.72 ± 5.1, and “stress” was 9.32 ± 6.7 from a total of 21 scores each category. The strong correlation was between knowledge, DASS scores, and age (p < 0.05). In addition, there was a strong correlation between knowledge, gender (p < 0.05) and education (p < 0.01). Binary logistic regression found a stronger association of knowledge and DASS scores with gender, young age, illiteracy (p < 0.01), and rural residence (p < 0.05). A positive relationship was found between depression and anxiety scores (p < 0.01) and a moderate positive relationship was found between depression and stress scores (p < 0.01). A positive attitude was reported by the majority of participants (p < 0.05). In terms of behavioural practises, participants reported both self and caregiver had followed health advice with regard to consulting health professionals (65.7%), implementing isolation (63.8%), taking droplet precaution care (87.4%), and hygiene care (90.3%).ConclusionParticipants in this study reported high levels of knowledge, adoption of positive attitudes, and the practise of positive health advisory behaviours related to COVID-19 prevention procedures. However, high levels of depression, anxiety, and stress were also reported. Overall, women and younger participants were more likely to have high KAP, whereas those living in rural areas and with literacy challenges were less likely to report high knowledge scores.
- Published
- 2021
40. Development and validation of cost-effective one-step multiplex RT-PCR assay for detecting the SARS-CoV-2 infection using SYBR Green melting curve analysis
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Md. Hasan Ali Pramanik, Iqbal Kabir Jahid, Hassan M. Al-Emran, Md. Anwar Hossain, Shovon Lal Sarkar, A. S. M. Rubayet Ul Alam, and Prosanto Kumar Das
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Diagnostic methods ,Multidisciplinary ,Coronavirus disease 2019 (COVID-19) ,Computer science ,Reverse Transcriptase Polymerase Chain Reaction ,SARS-CoV-2 ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Cost-Benefit Analysis ,Sample processing ,COVID-19 ,Computational biology ,Diamines ,Real-Time Polymerase Chain Reaction ,Sensitivity and Specificity ,Melting curve analysis ,Real-time polymerase chain reaction ,COVID-19 Testing ,TaqMan ,Quinolines ,Humans ,RNA, Viral ,Multiplex ,Benzothiazoles - Abstract
TaqMan probe-based commercial real-time (RT) PCR kits are expensive but most frequently used in COVID-19 diagnosis. The unprecedented scale of SARS-CoV-2 infections needs to meet the challenge of testing more persons at a reasonable cost. This study developed a simple and cost-effective alternative diagnostic method based on melting curve analysis of SYBR green multiplex assay targeting two virus-specific genes along with a host-specific internal control. A total of 180 randomly selected samples portioning into two subsets based on crude and high-quality RNA extraction were used to compare this assay with a nationwide available commercial kit (Sansure Biotech Inc., (Hunan, China)), so that we could analyze the variation and validity of this in-house developed method. Our customized-designed primers can specifically detect the viral RNA likewise Sansure. We separately optimized SYBR Green RT-PCR reaction of N, E, S, and RdRp genes based on singleplex melting curve analysis at the initial stage. After several rounds of optimization on multiplex assays of different primer combinations, the optimized method finally targeted N and E genes of the SARS-CoV-2 virus, together with the β-actin gene of the host as an internal control. Comparing with the Sansure commercial kit, our proposed assay provided up to 97% specificity and 93% sensitivity. The cost of each sample processing ranged between ~2 and ~6 USD depending on the purification level of extracted RNA template. Overall, this one-step and one-tube method can revolutionize the COVID-19 diagnosis in low-income countries.
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- 2021
41. Relative expression of pro-inflammatory molecules in COVID-19 patients manifested disease severities
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Habiba Ibnat, Shireen Nigar, Md. Anwar Hossain, Iqbal Kabir Jahid, Sourav Dutta Dip, M. Touhid Islam, SM Tanjil Shah, Ali Ahasan Setu, and Selina Akter
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Chemokine ,biology ,Coronavirus disease 2019 (COVID-19) ,business.industry ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Disease ,Immune system ,Immunology ,biology.protein ,Inflammatory molecules ,Medicine ,Tumor necrosis factor alpha ,business ,Viral load - Abstract
Aggressive immune response, due to over-expressed pro-inflammatory molecules, had been characterized in COVID-19 patients. Some of those mediators have a dual and opposite role on immune-systems to play behind differential disease severities. We investigated the expression of some cytokines and chemokines in COVID-19 patients in Bangladesh. We diagnosed the patients by detecting SARS-CoV-2 RNA in nasal swab samples by the real-time RT-PCR method. Thirty adult patients were preselected based on their disease severities and grouped into mild, moderate, and severe cases. Nine healthy volunteers participated in this study as control. Relative expression of nine cytokines/chemokine in total leukocytes was semi-quantified in SYBRgreen-based qRT-PCR. We performed statistical tests on transformed log data using SPSS 24.0. At the onset of symptoms (day-1), ACE2 (P < 0.05) and IL-6 (P > 0.05) were up-regulated in all COVID-19 groups, although expression levels did not significantly correlate with disease severities. However, expression of IL-6, MCP-1, MIP-1α, TNF-α, RANTES, and ACE2, on day-14, were positively correlated with disease severities. Relative viral load at day-1 showed no significant correlation with cytokine expression but had a significant positive correlation with RANTES and ACE2 expression on day-14 (P < 0.05). Male patients had a higher level of IL-6 than female patients on day-1 (P < 0.05). All COVID-19 patients showed up-regulated cytokines and chemokines on the day-14 compared to day-1 except TNF-α. Female patients had higher expression of ACE2 and IL-12 on day-14. Up-regulated cytokines/chemokines at the convalescent stage, especially IL-6, may target anti-cytokine therapy in post-COVID-19 patients’ management.
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- 2021
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42. Coping with COVID-19 Pandemic: A Population-Based Study in Bangladesh
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Tamanna Tasnim, Lori Maria Walton, Md. Shahoriar Ahmed, Iqbal Kabir Jahid, Md. Obaidul Haque, Joty Paul, Shafin Rubayet, Mohammad Anwar Hossain, Rafey Faruqui, Mst. Hosneara Yeasmin, Zakir Uddin, Veena Raigangar, Faruq Ahmed, Md. Feroz Kabir, Shohag Rana, Asma Islam, Md. Shahadat Hossain, K M Amran Hossain, Md. Sohrab Hossain, Sonjit Kumar Chakrovorty, Karen Saunders, and Mohamed Sakel
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Coping (psychology) ,Multivariate analysis ,Coronavirus disease 2019 (COVID-19) ,media_common.quotation_subject ,Pandemic ,Marital status ,Psychological resilience ,Psychology ,Disease cluster ,Mental health ,media_common ,Clinical psychology - Abstract
This study aims to investigate coping strategies used by Bangladeshi citizens during the COVID-19 pandemic.DesignProspective, cross-sectional survey of adults (N=2001) living in Bangladesh.MethodsParticipants were interviewed for socio-demographic data and completed the Bengali translated Brief-COPE Inventory. Statistical data analysis was conducted using SPSS (Version 20).ResultsParticipants (N=2001), aged 18 to 86 years, were recruited from eight administrative divisions within Bangladesh (mean age 31.85±14.2 years). Male to female participant ratio was 53.4% (n=1074) to 46.6% (n=927). Higher scores were reported for approach coping styles (29.83±8.9), with lower scores reported for avoidant coping styles (20.83 ± 6.05). Humor coping scores were reported at 2.68±1.3 and religion coping scores at 5.64±1.8. Both men and women showed similar coping styles. Multivariate analysis found a significant relationship between male gender and both humor and avoidant coping (p religion and approach coping (p approach coping (p ConclusionParticipants in this study coped with the COVID-19 pandemic by utilizing a combination of coping strategies. Factor 1 revealed both avoidant and approach coping strategies and Factor 2 revealed a combination of humor and avoidant coping strategies. Overall, a higher utilization of approach coping strategies was reported, which has previously been associated with better physical and mental health outcomes. Religion was found to be a coping strategy for all participants. Future research may focus on understanding resilience in vulnerable populations, including people with disability or with migrant or refugee status in Bangladesh.
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- 2021
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43. Physiotherapy and Rehabilitation Management of Musculoskeletal and Respiratory impairments in Long COVID cases in Bangladesh v1
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anwar_physiobd not provided, Dr Iqbal Kabir Jahid, K M Amran Hossain, Physiotherapist Md Shahoriar Ahmed, and Rubayet Shafin
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Executive summary: The first confirmed case of COVID 19 in Bangladesh was on 8th March 2020, then it subsequently rises and makes the government worried as well as for mass people of the country. Within 9th March it reaches 100 and exceeded 200 cases within next two days. Almost every country taken therapeutic and nontherapeutic measures to control the devastating situation of SARS-CoV where in Bangladesh there is an ongoing debate whether the measures have been adopted adequately or efficiently. It seems government did not impose any strict rules and the mass people also seem not too serious to maintain just a simple rule of wearing a Musk, which seems fancy and impractical to them. However, the consequences of the impact of SARS CoVwas frustrating, until today confirmed case was 371631, death case 5405, recovered 284833 and in Isolation 81393 (evident from corona.gov.bd).Developed countries investing a lot in research to discover the vaccine that can fight SARS CoV. Health care professionals with adequate training act as frontline fighters for SARS-CoV where all over the globe Rehabilitation professionals act as crucial health care providers for post-COVID patients. For instance, our research has four phases where phase one is completed and phase two is under process. For now, we aimed to complete our phase three and four. Phase Three aim: Identify the Functioning, disability, and other indicators of COVID-19 positive patients after recovery. and Phase four aim: evaluate the impact of physiotherapy and rehabilitation among the recovered COVID-19 patients.
- Published
- 2021
- Full Text
- View/download PDF
44. Metagenomic diagnosis and pathogenic network profile of SARS-CoV-2 in patients co-morbidly affected by type 2 diabetes
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Md. Anwar Hossain, A. S. M. Rubayet Ul Alam, Ajwad Anwar, Iqbal Kabir Jahid, Ovinu Kibria Islam, Hassan M. Al-Emran, M. Shaminur Rahman, and Md. Shazid Hasan
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biology ,business.industry ,Shiga toxin ,Disease ,Type 2 diabetes ,medicine.disease ,Obesity ,law.invention ,Probiotic ,law ,Diabetes mellitus ,Immunology ,medicine ,biology.protein ,Microbiome ,business ,Dysbiosis - Abstract
BackgroundThe mortality of COVID-19 disease is very high among males or elderly or individuals having comorbidities with obesity, cardiovascular diseases, lung infections, hypertension, and/or diabetes. Our study characterizes SARS-CoV-2 infected patients’ metagenomic features with or without type 2 diabetes to identify the microbial interactions associated with its fatal consequences.MethodThis study compared the baseline nasopharyngeal microbiome of SARS-CoV-2 infected diabetic and non-diabetic patients with controls adjusted with age and gender. The mNGS were performed using Ion GeneStudio S5 Series and the data were analyzed by the Vegan-package in R.ResultsAll three groups possessed significant bacterial diversity and dissimilarity indexes (p0.6, pConclusionThe dysbiosis of the bacterial community might be linked with severe consequences of COVID-19 infected diabetic patients, although few probiotic strains inhibited numerous pathogens in the same pathological niches. This study suggested that the promotion of normal-flora and probiotics through dietary changes and reduction of excessive pro-inflammatory states by preventing pathogenic environment might lead to a better outcome for those co-morbid patients.
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- 2021
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45. Antibiofilm effect of nisin alone and combined with food-grade oil components (thymol and eugenol) against Listeria monocytogenes cocktail culture on food and food-contact surfaces
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Md Iqbal Hossain, Md Furkanur Rahaman Mizan, Sazzad Hossen Toushik, Pantu Kumar Roy, Iqbal Kabir Jahid, Si Hong Park, and Sang-Do Ha
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Food Science ,Biotechnology - Published
- 2022
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46. A Delphi-Based Consensus Statement: Recommendation for Physiotherapy Management and Rehabilitation of People Living with Long COVID in Bangladesh
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Md. Shahoriar Ahmed, Md. Rasel, Md. Feroz Kabir, Mohammad Sohrab Hossain, Shohag Rana, Delowar Hossain, Rubayet Shafin, K M Amran Hossain, M. Shahadat Hossain, Sonjit Kumar Chakrovorty, Iqbal Kabir Jahid, Zakir Uddin, Mohammad Anwar Hossain, Veena Raigangar, Lori Maria Walton, and Md. Nazmul Hassan Mollah
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medicine.medical_specialty ,education.field_of_study ,Neck pain ,Rehabilitation ,business.industry ,medicine.medical_treatment ,Population ,Psychological intervention ,Context (language use) ,Guideline ,Clinical trial ,medicine ,Physical therapy ,medicine.symptom ,education ,business ,Neurorehabilitation - Abstract
Background: A Delphi-Based Consensus Statement: Recommendation for Physiotherapy Management and Rehabilitation of people living with Long COVID in Bangladesh Background: Covid-19 is a new and deadly virus with global consequences with special vulnerabilities in Bangladesh. The World Health Organization confirmed 22,451,122,614 cases and 4,627,540 deaths, worldwide (13th September 2021). In the United Kingdom, 1.5% of the estimated population of 970,000, suffers from Long COVID. Physiotherapy plays a vital role both in decreasing the number of deaths during the acute stage and improving function for patients across the spectrum of severity in the acute, sub-acute, and long-term context. Objectives: This Delphi-Based Consensus, provides recommendations for physiotherapy management and rehabilitation of people living with Long COVID. It includes recommendations for physiotherapy management for acute and subacute respiratory complications, a specific prescriptive exercise guideline for fatigue and musculoskeletal dysfunction and for improving psychological outcomes through combination of both counseling and rehabilitation. Methods: A team of 8 national and 6 international experts working in different disciplines were provided with studies on physiotherapy interventions in Long COVID-19 and were asked to provide treatment opinions based on the current literature for musculoskeletal, neurorehabilitation, respiratory, cardiac and psychological health domains. Statements were ranked and presented with individual opinions measured on a 10-point Likert Scale. The mean scores for each intervention were calculated and a manuscript with recommended physiotherapy interventions was prepared based on currently available evidence as presented and agreed upon by expert consensus. Findings: Experts recommended the following interventions based on mean agreement scores: diaphragmatic breathing (Mean = 7.5), thoracic expansion (with shoulder elevation) (Mean =8.5) and expiratory muscle training (Mean=6.3) for respiratory rehabilitation. Mild to moderate graded exercise (Mean= 7.7) was suggested for recovery from fatigue and McKenzie directional preference exercises for low back pain (Mean= 8.6), neck pain (Mean =7.9) and knee pain (Mean =8.3). Additionally, communicative and educative strategies were recommended for the rehabilitation of COVID-19. Conclusion: This consensus is structured according to the expert opinions of medical and rehabilitation professionals and based on current literature to recommend a series of rehabilitation interventions for physiotherapy professionals to manage Long COVID cases. Funding: This research has not been funded by any other external organization nor received any grants from commercial or not-for-profit organizations. Declaration of Interests: None declared. Ethics Approval Statement: Ethical permission was obtained from the Centre for the Rehabilitation of the Paralysed (CRP) ethics committee. The reference number CRP-R&E-0401-337. Trial Registration: Trial registration from the WHO Clinical trial registry platform, the reference number CTRI/2020/10/028179.
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- 2021
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47. Knowledge, Attitudes, and Practices of People living with SCI towards COVID-19 and their Psychological State during In-patient Rehabilitation in Bangladesh
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Rafey Faruqui, Manzur Kader, Mohamed Sakel, Karen Saunders, Zakir Uddin, Md. Feroz Kabir, Md. Obaidul Haque, K M Amran Hossain, Mohammad Sohrab Hossain, Rubayet Shafin, Iqbal Kabir Jahid, Lori Maria Walton, and Mohammad Anwar Hossain
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medicine.medical_specialty ,Rehabilitation ,DASS ,business.industry ,media_common.quotation_subject ,medicine.medical_treatment ,Traumatology ,Logistic regression ,medicine.disease ,Hygiene ,medicine ,Physical therapy ,Anxiety ,medicine.symptom ,business ,Spinal cord injury ,Depression (differential diagnoses) ,media_common - Abstract
Study DesignA prospective cross-sectional survey.ObjectiveThe study aimed to examine the Knowledge, Attitudes, and Practices (KAP) of people living with Spinal cord injury (SCI) towards COVID-19 and their psychological status during in-patient rehabilitation in Bangladesh.SettingThe Centre for the Rehabilitation of the Paralyzed (CRP) and the National Institute of Traumatology and Orthopedic Rehabilitation (NITOR), two tertiary level hospitals in Dhaka, Bangladesh.MethodsFrom July to September 2020, a prospective, cross-sectional survey of SCI subjects, 13-78 years of age, carried out in two SCI rehab centers in Bangladesh. Data has been collected by face to face interview through a pretested, and language validated questionnaire on KAP and Depression, Anxiety, Stress (DASS). Ethical approval and trial registration obtained prospectively. As all the patients were previously living with Spinal cord injury (SCI), therefore, all the patients admitted/ attend SCI rehab centers were considered as SCI positive samples.ResultsA total of 207 people with SCI responded, 87%were male, and 13% were female with mean age34.18±12.9 years. 33.8% was tetraplegic and 66.2% was paraplegic and 63.8% of them were diagnosed ASIA-A, with motor score 45.38±19.5, sensory score 97.2±52, SpO2 95.07±3.3, and Vo2max 35.7±3.7mL/kg/min. 178 people had at least one health issue. Overall knowledge score was 8.59±2.3 out of 12, depression 11.18±8, anxiety 7.72±5.1, and stress was 9.32±6.7 from a total of 21 scores each. There was a correlation between Knowledge and DASS with age (POR 6.6, 6.6, .95, 6.6; POR.418, POR3.81, POR.48, Pr.45, Pr.58, PConclusionsDuring in-patient rehabilitation in Bangladesh, the majority of SCI reported that they had communicated with health professionals and practiced behaviors that would reduce transmission and risk of COVID-19.
- Published
- 2020
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48. Molecular characterization of cellulolytic (endo- and exoglucanase) bacteria from the largest mangrove forest (Sundarbans), Bangladesh
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Satyajit Biswas, A. S. M. Rubayet Ul Alam, Md. Al Saber, Md. Nazmul Hasan, Md. Aminul Islam, Md. Shazid Hasan, Md. Adnan Karim, Ismoth Ara Tripty, and Md. Iqbal Kabir Jahid
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Bacillus (shape) ,biology ,Pseudomonas ,biology.protein ,Fermentation ,Cellulase ,Food science ,biology.organism_classification ,16S ribosomal RNA ,Applied Microbiology and Biotechnology ,Enterobacteriaceae ,Yeast ,Bacteria - Abstract
PurposeCellulase, due to its massive applicability, has been used in various industrial processes such as biofuels (bioethanol, triphasic biomethanation), agricultural and plant waste management, chiral separation, and ligand binding studies. The finding of a novel cellulase-producing bacterium will benefit the industries, which rely on yeast to produce cellulase in fermentation technology, because bacteria can easily be manipulated and fermented cost-effectively.MethodsCellulase enzyme-secreting bacteria were isolated from different regions of the world’s largest mangrove forests, Sundarbans in Bangladesh. Biochemical, morphological, and 16S rRNA identification protocol was followed to precisely characterize the bacterial strains.ResultWe have determined that the strain T2-D2 (Bacillussp.), E1-PT (Pseudomonassp.), and D1-PT (Pseudomonassp.) showed maximum endoglycolytic and strain C1-BT (Bacillussp.), E1-BT (Bacillussp.), and T-4 (E) showed relatively higher exoglycolytic activity during the test. So, it can be easily cultured at a normal temperature (97.7–99.5 °F). On the one hand, T2-D2 (Bacillussp.) and E1-PT (Pseudomonassp.) have shown the highest growth rate at pH 7 as it was neither acidic nor basic.ConclusionIt was concluded that the strain T2-D2 (Bacillussp.) and E1-PT (Pseudomonassp.) would be our target cellulolytic strains wherein the experimental isolates belonged to the Enterobacteriaceae, Psuedomonacea, Bacillacea, and Morganellacea family.
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- 2020
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49. Characterization and evaluation of antimicrobial and probiotic properties of lactic acid bacteria for controlling zoonotic pathogens in poultry
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Iqbal Kabir Jahid, Rine Christopher Reuben, Shovon Lal Sarkar, and Pravas Chandra Roy
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Microbiology (medical) ,biology ,General Medicine ,biology.organism_classification ,Antimicrobial ,law.invention ,Lactic acid ,lcsh:Infectious and parasitic diseases ,Probiotic ,chemistry.chemical_compound ,Infectious Diseases ,chemistry ,law ,lcsh:RC109-216 ,Food science ,Bacteria - Published
- 2020
50. Impact of Post COVID Physiotherapy and Rehabilitation in Bangladesh v1
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anwar_physiobd not provided, Dr Iqbal Kabir Jahid, K M Amran Hossain, and Physiotherapist Md Shahoriar Ahmed
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medicine.medical_specialty ,Rehabilitation ,business.industry ,medicine.medical_treatment ,medicine ,Physical therapy ,business - Abstract
Executive summary: The first confirmed case of COVID 19 in Bangladesh was on 8th March 2020, then it subsequently rises and makes the government worried as well as for mass people of the country. Within 9th March it reaches 100 and exceeded 200 cases within next two days. Almost every country taken therapeutic and nontherapeutic measures to control the devastating situation of SARS-CoV where in Bangladesh there is an ongoing debate whether the measures have been adopted adequately or efficiently. It seems government did not impose any strict rules and the mass people also seem not too serious to maintain just a simple rule of wearing a Musk, which seems fancy and impractical to them. However, the consequences of the impact of SARS CoVwas frustrating, until today confirmed case was 371631, death case 5405, recovered 284833 and in Isolation 81393 (evident from corona.gov.bd).Developed countries investing a lot in research to discover the vaccine that can fight SARS CoV. Health care professionals with adequate training act as frontline fighters for SARS-CoV where all over the globe Rehabilitation professionals act as crucial health care providers for post-COVID patients. For instance, our research has four phases where phase one is completed and phase two is under process. For now, we aimed to complete our phase three and four. Phase Three aim: Identify the Functioning, disability, and other indicators of COVID-19 positive patients after recovery. and Phase four aim: evaluate the impact of physiotherapy and rehabilitation among the recovered COVID-19 patients.
- Published
- 2020
- Full Text
- View/download PDF
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